Citrus Sinensis ID: 044245
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 694 | 2.2.26 [Sep-21-2011] | |||||||
| Q944R7 | 724 | Protein arginine N-methyl | yes | no | 0.976 | 0.936 | 0.627 | 0.0 | |
| A2Y8B9 | 720 | Protein arginine N-methyl | N/A | no | 0.962 | 0.927 | 0.588 | 0.0 | |
| Q5VS72 | 720 | Protein arginine N-methyl | yes | no | 0.962 | 0.927 | 0.586 | 0.0 | |
| Q9NVM4 | 692 | Protein arginine N-methyl | yes | no | 0.865 | 0.868 | 0.306 | 9e-74 | |
| A6QQV6 | 695 | Protein arginine N-methyl | yes | no | 0.865 | 0.864 | 0.294 | 9e-70 | |
| Q5ZIB9 | 689 | Protein arginine N-methyl | yes | no | 0.930 | 0.937 | 0.303 | 2e-69 | |
| A2AV36 | 683 | Protein arginine N-methyl | yes | no | 0.920 | 0.935 | 0.305 | 3e-68 | |
| Q922X9 | 692 | Protein arginine N-methyl | yes | no | 0.935 | 0.937 | 0.290 | 3e-68 | |
| Q99MI9 | 692 | Protein arginine N-methyl | N/A | no | 0.863 | 0.865 | 0.302 | 3e-68 | |
| Q5U4E8 | 693 | Protein arginine N-methyl | yes | no | 0.939 | 0.940 | 0.283 | 3e-67 |
| >sp|Q944R7|ANM16_ARATH Protein arginine N-methyltransferase 1.6 OS=Arabidopsis thaliana GN=PRMT16 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/703 (62%), Positives = 526/703 (74%), Gaps = 25/703 (3%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
S+QR+FQL+ DPLTGNSEW+VIE+N D P +S + LLATTSYLDMLNDS RN AYRLAI+
Sbjct: 37 SSQRVFQLRQDPLTGNSEWIVIEDN-DQPGTSTDGLLATTSYLDMLNDSRRNIAYRLAIE 95
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K +T+ CHVLDIGAGTGLLSMMA RAM ++KGMVTACESYLPMVKLM+KV+H
Sbjct: 96 KTITEPCHVLDIGAGTGLLSMMAVRAMRG-------DSKGMVTACESYLPMVKLMRKVMH 148
Query: 122 VNGMGRNIKVINKRSDELEVGV-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
NGM +NI +INKRSDEL+VG DI SRAD+LVSEILDSELLGEGLIP+LQHAHD LLV+
Sbjct: 149 KNGMTKNINLINKRSDELKVGSEDIASRADVLVSEILDSELLGEGLIPSLQHAHDMLLVD 208
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NP TVP R TTY QLVESTFL L DL NNEAK D + LVP G++S+ +KSQQY+MH
Sbjct: 209 NPKTVPYRATTYCQLVESTFLCNLQDLRNNEAKTSDGVRLVPPGLESLFGIKSQQYSMHV 268
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DAI KEIKLLSEP KIFEFDFWKRP+S+GE ++ I++ G VHA++SWWVLQLD EGTI
Sbjct: 269 DAIEKEIKLLSEPVKIFEFDFWKRPESNGELDVHIEAKTTGSVHAIISWWVLQLDSEGTI 328
Query: 301 FYSTAPRWISTG------NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELK 354
FYSTAPRWI + +WCDHWKQCVWF PG G+SI KGE++ HA HT T++ Y LK
Sbjct: 329 FYSTAPRWIDSNSEIGVRDWCDHWKQCVWFTPGTGVSISKGEKVHLHASHTCTNILYNLK 388
Query: 355 SQIPITDERQH-NLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVAD 413
+T ER H L+ D L LPPER+AIYGD +R S+ A R ALQG+ P C+V D
Sbjct: 389 KTQSLTHERTHFPLSTGDLHLTLPPERVAIYGDSIYRQSLFEATRKALQGKSYPQCLVID 448
Query: 414 DSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473
DS+ L + +S + VLSL PGL + A+Y +AD N FS DR E + GK L
Sbjct: 449 DSLLLPLMALHISNRSRVLSLSPGLQENAARYFEAIADSNGFSKDRFEYFRDGKTNLA-- 506
Query: 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIF 533
K+DLLIGEPYY G + LPWQNLRFWK+R+ LD VLS++ ++MP+KG+L+ CA++
Sbjct: 507 KAYPGKIDLLIGEPYYSGLENGLPWQNLRFWKDRTLLDSVLSEDAVVMPYKGVLRGCAMY 566
Query: 534 CPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTV 593
PD+W SR L +EGFDH +VNT+LG CGDLP+ KD PCLPFF WQCGE K LS FTV
Sbjct: 567 LPDLWKSRCCLGSVEGFDHTLVNTTLGGCGDLPSGKDSPCLPFFIWQCGETKILSKEFTV 626
Query: 594 MEFDFSKPIS-PCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVK 652
MEFDFSKPI+ PC G+VQ+EF +PG+CHG ALW+DWV+D ENS VISTGPD +YWKQGVK
Sbjct: 627 MEFDFSKPITGPCSGEVQIEFIKPGVCHGIALWMDWVMDEENSTVISTGPDDKYWKQGVK 686
Query: 653 LMAKPVAVGFEESGRTDLCSSTLVEASFD-PSNGELNVQHTFS 694
L+ KPV V E SS ++AS D SN EL V HT S
Sbjct: 687 LLGKPVTVRMEGPS-----SSIGIQASLDLSSNSELIVTHTIS 724
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Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA). Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|A2Y8B9|ANM7_ORYSI Protein arginine N-methyltransferase 7 OS=Oryza sativa subsp. indica GN=PRMT7 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/697 (58%), Positives = 513/697 (73%), Gaps = 29/697 (4%)
Query: 5 RMFQLKLDPLTGNSEWVVIEEN---EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
R FQL+L+PLTG+SEW+V+EE + P + LLATTSYLDMLNDS RNRAYR AI+
Sbjct: 29 RAFQLRLNPLTGDSEWLVVEEEEEEDHHPTPPPKQLLATTSYLDMLNDSARNRAYRRAIE 88
Query: 62 KMVTK-SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL 120
VT S VLDIGAGTGLLSMMAARA+ + T G V+ACESYLPM KLM++VL
Sbjct: 89 AAVTDPSSRVLDIGAGTGLLSMMAARALAAVGGETR---GGSVSACESYLPMGKLMRRVL 145
Query: 121 HVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
NGM +KV +KRSDEL+VG D+DS ADILVSEILDSELLGEGLIPTLQ A+D LL +
Sbjct: 146 RANGMENRVKVFHKRSDELKVGDDLDSPADILVSEILDSELLGEGLIPTLQQAYDMLLAK 205
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NP VP R TTYGQLVESTFLWKLHDL+NNEA A D + L P M+ I+ VK QQ+AM C
Sbjct: 206 NPKIVPYRATTYGQLVESTFLWKLHDLHNNEANAADGVWLTPGEMERIVSVKPQQHAMQC 265
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DA+ EI+LLSEPFK+FEFDFWKRPDSH EA ++I++T DG VHA++SWWVLQLD G+I
Sbjct: 266 DALEDEIRLLSEPFKVFEFDFWKRPDSHREANIKIQTTRDGYVHAIISWWVLQLDSAGSI 325
Query: 301 FYSTAPRWISTG----------NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVS 350
FYSTAPRW +WCDHWKQCVWF+ GKG+ + + L A H +TS+S
Sbjct: 326 FYSTAPRWARQSSSEGPQRDMKDWCDHWKQCVWFMQGKGIPATEDQVLSLRARHNQTSIS 385
Query: 351 YELKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCV 410
Y+L I DE + ++K L L PERIA+YGD +WR +++ ++NAL + P CV
Sbjct: 386 YQLN----INDE-ACDRSSKGDHLTLLPERIALYGDKDWRSALINTIKNALTVKSSPTCV 440
Query: 411 VADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470
VADDS+FL + ++ +S T+ V+++ PGL DKGA YLR+VAD N FSID+++++ K +
Sbjct: 441 VADDSMFLALLISSMSPTSKVIAMYPGLRDKGAAYLRSVADANNFSIDQIQVIGKRASSI 500
Query: 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKAC 530
T DD + KKV+LL+GEP+Y G++GMLPWQNLRFW R+ LD +LS++ IMP KGILK C
Sbjct: 501 TADDLKHKKVNLLVGEPFYLGSEGMLPWQNLRFWSVRTLLDSMLSEDAFIMPCKGILKLC 560
Query: 531 AIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNV 590
A+ PD+W SR SL +EGFDH+VVN +LGACG LP + GPCLP++ WQCG KKLS V
Sbjct: 561 AMSLPDLWRSRSSLKDVEGFDHSVVNETLGACGYLPGDQQGPCLPYYVWQCGYTKKLSKV 620
Query: 591 FTVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQG 650
+++M+F+FS+PI C GK ++EF+ G CHGFA+WIDWVLD S+V++TGPD RYWKQG
Sbjct: 621 YSLMDFNFSEPIHSCFGKTKIEFSHDGTCHGFAVWIDWVLDERKSVVLTTGPDNRYWKQG 680
Query: 651 VKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGEL 687
V+L KPV V G+ S VEASFDPS GE+
Sbjct: 681 VQLFGKPVEV---NPGK----SVMHVEASFDPSTGEI 710
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Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5VS72|ANM7_ORYSJ Protein arginine N-methyltransferase 7 OS=Oryza sativa subsp. japonica GN=PRMT7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/697 (58%), Positives = 513/697 (73%), Gaps = 29/697 (4%)
Query: 5 RMFQLKLDPLTGNSEWVVIEEN---EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
R FQL+L+PLTG+SEW+V+EE + P + LLATTSYLDMLNDS RNRAYR AI+
Sbjct: 29 RAFQLRLNPLTGDSEWLVVEEEEEEDHHPTPPPKQLLATTSYLDMLNDSARNRAYRRAIE 88
Query: 62 KMVTK-SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL 120
VT S VLDIGAGTGLLSMMAARA+ + T G V+ACESYLPM KLM++VL
Sbjct: 89 AAVTDPSSRVLDIGAGTGLLSMMAARALAAVGGETR---GGSVSACESYLPMGKLMRRVL 145
Query: 121 HVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
NGM +KV +KRSDEL+V D+DS ADILVSEILDSELLGEGLIPTLQ A+D LL +
Sbjct: 146 RANGMENRVKVFHKRSDELKVRDDLDSPADILVSEILDSELLGEGLIPTLQQAYDMLLAK 205
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NP VP R TTYGQLVESTFLWKLHDL+NNEA A D + L P M+ I+ VK QQ+AM C
Sbjct: 206 NPKIVPYRATTYGQLVESTFLWKLHDLHNNEANAADGVWLTPGEMERIVSVKPQQHAMQC 265
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DA+ EI+LLSEPFK+FEFDFWKRPDSH EA ++I++T DG VHA++SWWVLQLD G+I
Sbjct: 266 DALEDEIRLLSEPFKVFEFDFWKRPDSHREANIKIRTTRDGYVHAIISWWVLQLDSAGSI 325
Query: 301 FYSTAPRWISTG----------NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVS 350
FYSTAPRW +WCDHWKQCVWF+ GKG+ + + L A H +TS+S
Sbjct: 326 FYSTAPRWARQSSSEGPQRDMKDWCDHWKQCVWFMQGKGIPATEDQVLSLRARHNQTSIS 385
Query: 351 YELKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCV 410
Y+L I DE + ++K L L PERIA+YGD +WR +++ ++NAL + P CV
Sbjct: 386 YQLN----INDE-ACDRSSKGDHLTLLPERIALYGDKDWRSALINTIKNALTVKSSPTCV 440
Query: 411 VADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470
VADDS+FL + ++ +S T+ V+++ PGL DKGA YLR+VAD N FSID+++++ K +
Sbjct: 441 VADDSMFLALLISSMSPTSKVIAMYPGLRDKGAAYLRSVADANNFSIDQIQVIGKRASSI 500
Query: 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKAC 530
T DD + KKV+LL+GEP+Y G++GMLPWQNLRFW R+ LD +LS++ IMP KGILK C
Sbjct: 501 TADDLKHKKVNLLVGEPFYLGSEGMLPWQNLRFWSVRTLLDSMLSEDAFIMPCKGILKLC 560
Query: 531 AIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNV 590
A+ PD+W SR SL +EGFDH+VVN +LGACG LP + GPCLP++ WQCG KKLS V
Sbjct: 561 AMSLPDLWRSRSSLKDVEGFDHSVVNETLGACGCLPGDQQGPCLPYYVWQCGYTKKLSKV 620
Query: 591 FTVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQG 650
+++M+F+FS+PI C GK ++EF+ G CHGFA+WIDWVLD S+V++TGPD RYWKQG
Sbjct: 621 YSLMDFNFSEPIHSCFGKTKIEFSHDGTCHGFAVWIDWVLDERKSVVLTTGPDNRYWKQG 680
Query: 651 VKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGEL 687
V+L +KPV V G+ S VEASFDPS GE+
Sbjct: 681 VQLFSKPVEV---NPGK----SVMHVEASFDPSTGEI 710
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9NVM4|ANM7_HUMAN Protein arginine N-methyltransferase 7 OS=Homo sapiens GN=PRMT7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 203/663 (30%), Positives = 311/663 (46%), Gaps = 62/663 (9%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMV 64
++F + +P TG+ EW+ +E+ D + +A +SY DML+D RN Y I V
Sbjct: 2 KIFCSRANPTTGSVEWLEEDEHYDYHQE-----IARSSYADMLHDKDRNVKYYQGIRAAV 56
Query: 65 TK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ VLDIG GTGLLSMMA A A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTAGAD-----------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGV--DIDSRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D+ RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPEGDMPCRANILVTELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVP-------AGMDSI 228
L+ EN VP R T Y QLVES +W + L+ + +L + +VP G S+
Sbjct: 166 LVEENCEAVPHRATVYAQLVESGRMWSWNKLFPIHVQTSLGEQVIVPPVDVESCPGAPSV 225
Query: 229 LHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAE-LQIKSTDDGRVHAVV 287
++ Q + + +LS+ +F DF K+ S + + GR V+
Sbjct: 226 CDIQLNQVS------PADFTVLSDVLPMFSIDFSKQVSSSAACHSRRFEPLTSGRAQVVL 279
Query: 288 SWWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343
SWW +++D EG I + AP W + W DHW QCV+F+P + + +G L A
Sbjct: 280 SWWDIEMDPEGKIKCTMAPFWAHSDPEEMQWRDHWMQCVYFLPQEE-PVVQGSALYLVAH 338
Query: 344 HTETSVSYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNA 400
H + V Y L+ P +ER + D Q L R D + V A+R
Sbjct: 339 HDDYCVWYSLQRTSPEKNERVRQMRPVCDCQAHLLWNRPRFGEINDQDRTDRYVQALRTV 398
Query: 401 LQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRV 460
L + +C+ D L++ L V ++ + LR + N D++
Sbjct: 399 L--KPDSVCLCVSDGSLLSVLAHHLG-VEQVFTVESSAASH--KLLRKIFKANHLE-DKI 452
Query: 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520
I++K + LT +D Q +KV LL+GEP++ +LPW NL FW R+ +D L ++
Sbjct: 453 NIIEKRPELLTNEDLQGRKVSLLLGEPFF--TTSLLPWHNLYFWYVRTAVDQHLGPGAMV 510
Query: 521 MPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQ 580
MP L A + D+W R EGFD +++ + D ++ P + +
Sbjct: 511 MPQAASLHAVVVEFRDLWRIRSPCGDCEGFDVHIMDDMIKRALDFRESREAEPHPLWEYP 570
Query: 581 CGEIKKLSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVI 638
C + LS + ++ FDF +P+ P + VE PG H LW+++ L E +
Sbjct: 571 C---RSLSEPWQILTFDFQQPVPLQPLCAEGTVELRRPGQSHAAVLWMEYHLTPE--CTL 625
Query: 639 STG 641
STG
Sbjct: 626 STG 628
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
| >sp|A6QQV6|ANM7_BOVIN Protein arginine N-methyltransferase 7 OS=Bos taurus GN=PRMT7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 195/663 (29%), Positives = 307/663 (46%), Gaps = 62/663 (9%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMV 64
++F + +P TG+ EW+ +E+ D + +A +SY DML+D RN Y I V
Sbjct: 2 KVFCGRANPTTGSVEWLEEDEHYDYHQE-----IARSSYADMLHDKDRNMKYYQGIRAAV 56
Query: 65 TK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ VLDIG GTGLLSMMA A A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTAGAD-----------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+IL++E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDMPCRANILITELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVP-------AGMDSI 228
L+ N VP R T Y QLVES +W + L+ + + + ++P G S+
Sbjct: 166 LVQANCEAVPHRATVYAQLVESRRMWSWNKLFPIRVQTSRGERVIIPPLELERCPGAPSV 225
Query: 229 LHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAE-LQIKSTDDGRVHAVV 287
++ Q + + +LS+ +F DF K+ S Q + GR V+
Sbjct: 226 CDIQLNQVS------PADFTILSDVLPMFSVDFSKQVSSSAACHSRQFEPLVSGRAQVVL 279
Query: 288 SWWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343
SWW +++D EG I + AP W + W DHW QCV+F+P + + +G L A
Sbjct: 280 SWWDIEMDPEGKIKCTMAPSWAHSDPEELQWRDHWMQCVYFLPQEE-PVVQGLALCLVAY 338
Query: 344 HTETSVSYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNA 400
H + V Y L+ P + R H + D Q L R D + A+R
Sbjct: 339 HDDYCVWYSLQKTSPEKNGRVHPVRPVCDCQAHLLWNRPRFGEINDRNRTDQYIQALRTV 398
Query: 401 LQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRV 460
L + +C+ D L++ L V ++ + ++ + N D++
Sbjct: 399 L--KPDSVCLCVSDGSLLSMLAYHLG-VEQVFTIENSA--VSHRLMKKIFKANHLE-DKI 452
Query: 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520
I++K + LT D + KKV LL+GEP++ +LPW NL FW R+ +D L ++
Sbjct: 453 NIIEKRPELLTPADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTAVDQHLGPGAVV 510
Query: 521 MPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQ 580
MP L + D+W R EGFD +++ + D K+ P + +
Sbjct: 511 MPQAASLHVVVVEFRDLWRIRSPCGDCEGFDVHIMDDMIKRALDFRESKEAEPHPLWEYP 570
Query: 581 CGEIKKLSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVI 638
C + + + T FDF +P+ P + +E G HG LW+++ L ++++ +
Sbjct: 571 CSSLSEPQQILT---FDFRQPVPLQPIHAEGTIELRRCGRSHGAVLWMEYHLTADST--V 625
Query: 639 STG 641
STG
Sbjct: 626 STG 628
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
| >sp|Q5ZIB9|ANM7_CHICK Protein arginine N-methyltransferase 7 OS=Gallus gallus GN=PRMT7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 218/718 (30%), Positives = 327/718 (45%), Gaps = 72/718 (10%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMV 64
+ F + +P TG+ EWV EE+ED + QE +A + Y DML+D RN Y I V
Sbjct: 2 KTFCGRANPTTGSLEWV--EEDEDY-DYHQE--IARSRYADMLHDKDRNMKYYQGIRAAV 56
Query: 65 TK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ VLDIG GTGLLSMMAA A A E + PM K
Sbjct: 57 SRVKGRGEKAIVLDIGTGTGLLSMMAASAGAD-----------FCYAVEVFKPMANAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG G IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +PT +HAH
Sbjct: 106 IVEKNGFGDKIKVINKHSTEVTVGPDGDMQCRANILVTELFDTELIGEGALPTYEHAHKY 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLY--NNEAKALDDIHLVPAGMDSILHVKSQ 234
L+ E VP R T Y QLVES +W + L+ + EA+ + I + P+ M++ V S
Sbjct: 166 LVQEGCEAVPHRATVYVQLVESKRMWSWNKLFPVHVEAEDGEKIIVSPSEMENCPGVPSV 225
Query: 235 QYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEA-ELQIKSTDDGRVHAVVSWWVLQ 293
+ + +LS+ +F DF K S Q+ G+ V+SWW +
Sbjct: 226 CDIQLNQMPSSDFTILSDVVTMFSVDFSKPVRSASTCYRAQLDPVKSGKAQIVLSWWDID 285
Query: 294 LDREGTIFYSTAPRWI---STGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVS 350
+D GTI + AP W+ S W DHW QCV+F+P K + +GE++ A E SV
Sbjct: 286 MDPSGTINCTMAPYWVKPMSAFQWRDHWMQCVYFLP-KEEQVLQGEKVHLTACRDEYSVW 344
Query: 351 YELKSQIPITDERQHNLNAKDFQLALPPERIAIYGD-GEWRLSMVMAMRNALQGRVQPLC 409
Y L+ R+ + + D ++ P R + R + Q +
Sbjct: 345 YTLQKA------REEDESKADARVESPVCRCQAHLLWNRPRFGELNDQNRTRQYIKSLMS 398
Query: 410 VVADDSVFLTICVARLSKTAHVLSLLPGLGDK-GAQYLRTVADP--NCFSI--------- 457
V+ DSV L I SLLP L GA+ + T+ + +C +
Sbjct: 399 VLRTDSVCLCISDG---------SLLPVLAHYLGAEQVFTLENSAVSCSVMKKFFKANHL 449
Query: 458 -DRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSK 516
D+++I++ + LT ++KK+ +L+GEP++ +LPW NL FW R+ + L+
Sbjct: 450 EDKIKIVEARPELLTSSHLEEKKISVLVGEPFF--TTSLLPWHNLYFWYARTAVTEHLAS 507
Query: 517 EVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPF 576
+V ++P L + D+W R EGFD ++ + + K+ P
Sbjct: 508 DVTVLPQSAALHMMIVEFQDLWRIRSPCGTCEGFDVQTMDDMIKNSLNFRESKEAEPHPL 567
Query: 577 FTWQCGEIKKLSNVFTVMEFDFSK--PISPCQGKVQVEFTEPGLCHGFALWIDWVLDSEN 634
+ + C K LSN V+ FDF K P + V G HG LW+++ L ++
Sbjct: 568 WEYPC---KSLSNPQEVLLFDFRKTVPQHCLSTEGSVNLLRKGKSHGAVLWMEYHLTADI 624
Query: 635 SIV-----ISTGPDKRYWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGEL 687
S+ IS W K + E D+ ++ FD GE+
Sbjct: 625 SVSTGLMQISNEKGNCEWNPHCKQAVYFFSSVIESETLADVPTAVTYAIKFDTKTGEI 682
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
| >sp|A2AV36|ANM7_DANRE Protein arginine N-methyltransferase 7 OS=Danio rerio GN=prmt7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 223/731 (30%), Positives = 337/731 (46%), Gaps = 92/731 (12%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
+ F + +P TG +WV EE+E+ + QE +A + Y DML+D RN Y R A+
Sbjct: 2 KTFCGRANPTTGALDWV--EESEEY-DYHQE--IARSCYADMLHDKDRNEKYYEGIRAAV 56
Query: 61 DKMVTKSCH--VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ + VLDIG GTGLLSMMA A A E + PM +
Sbjct: 57 RRVKARGERPVVLDIGTGTGLLSMMAVTAGAD-----------FCYAIEVFKPMAQAASC 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IK+INK S E+ VG D D RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVERNGFSDKIKIINKHSTEVTVGPDGDMQERANILVTELFDTELIGEGALPSYEHAHMH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVP-------AGMDSIL 229
L+ VP R T Y QLVES LWK + + +D L+P AG S+
Sbjct: 166 LVQTGCEAVPHRATIYAQLVESDMLWKWAQMRPID---VDGHRLMPPGAVQECAGAPSVC 222
Query: 230 HVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEA-ELQIKSTDDGRVHAVVS 288
++ Q + DA T +S +F DF K S ++ ++ KS GR V+S
Sbjct: 223 DIQLSQ--VPTDAFTA----ISPVCTMFSVDFSKPVSSAAQSYTVRFKSQTGGRAQVVLS 276
Query: 289 WWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALH 344
WW + +D EG I + AP W W DHW Q V+F+P + ++ +GEEL+ H
Sbjct: 277 WWDIDMDPEGNIVCTMAPSWSYADPHAYPWRDHWMQSVYFLPAEE-NVSEGEELMLMVSH 335
Query: 345 TETSVSYELKSQIPITDERQHNLNAKDFQ--------LALPPERIAIYGDGEWRLSMVMA 396
+ S+ Y L T Q+++ F+ L R D + S V A
Sbjct: 336 DDYSLWYSL------THSEQNDVRVAPFRPCCTCQAHLVWTRPRFGELNDEQRTESYVSA 389
Query: 397 MRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456
+R+ L + +C+ D L + A L + V SL K Q + V N
Sbjct: 390 LRSIL--KPDSVCLSVSDGSLLPV-FAHLLGSKKVFSLESSGMAK--QVIEQVLHTNSLK 444
Query: 457 IDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSK 516
D V++L + L++ D ++ +L+GEPY+ + +LPW +L FW R+ + +L
Sbjct: 445 -DGVQLLGIRAEQLSLADLDGNQISVLMGEPYF--STSLLPWHSLFFWYCRTAVAQLLQP 501
Query: 517 EVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPF 576
+ I+P L A A+ D+W R EGFD + ++ + D + P
Sbjct: 502 DATILPRAATLYAVAVEFQDLWRIRFPCGTCEGFDVSPMDEMIQRSLDFRESWEAEPHPL 561
Query: 577 FTWQCGEIKKLSNVFTVMEFDFSK--PISPCQGKVQVEFTEPGLCHGFALWIDWVLDSEN 634
+ + C + L+ VM FDF++ P P V FT G CHG ALW+++ L +
Sbjct: 562 WEYPC---RALTKPCPVMTFDFTQCVPEQPISSDGAVPFTGRGRCHGVALWMEYQL--TD 616
Query: 635 SIVISTGPDKR-----------YWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPS 683
I +S G K + KQGV A GR DL S +F+P
Sbjct: 617 DISVSMGLTKAVSQEGACEWNPHRKQGVFFFRS--AKETSGDGREDLSYSL----TFEPH 670
Query: 684 NGELNVQHTFS 694
+G++ + + +
Sbjct: 671 SGDIKMDFSIT 681
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
| >sp|Q922X9|ANM7_MOUSE Protein arginine N-methyltransferase 7 OS=Mus musculus GN=Prmt7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 209/720 (29%), Positives = 333/720 (46%), Gaps = 71/720 (9%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMV 64
++F + +P TG+ EW+ +E+ D + +A +SY DML+D RN Y I V
Sbjct: 2 KVFCGRANPTTGSLEWLEEDEHYDYHQE-----IARSSYADMLHDKDRNIKYYQGIRAAV 56
Query: 65 TK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ VLDIG GTGLLSMMA A A E + PM + K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTAGAD-----------FCYAIEVFKPMAEAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+IL++E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVERNGFSDKIKVINKHSTEVTVGPDGDLPCRANILITELFDTELIGEGALPSYEHAHKH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVP-------AGMDSI 228
L+ E+ VP R T Y QLVES +W + L+ + +L + +VP G S+
Sbjct: 166 LVQEDCEAVPHRATVYAQLVESRRMWSWNKLFPVRVRTSLGEQVIVPPSELERCPGAPSV 225
Query: 229 LHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAE-LQIKSTDDGRVHAVV 287
++ Q + + +LS+ +F DF K+ S Q G+ V+
Sbjct: 226 CDIQLNQVS------PADFTVLSDVLPMFSVDFSKQVSSSAACHSRQFVPLASGQAQVVL 279
Query: 288 SWWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343
SWW +++D EG I + AP W T W DHW QCV+F+P + + +G A
Sbjct: 280 SWWDIEMDPEGKIKCTMAPFWAQTDPQELQWRDHWMQCVYFLPQEE-PVVQGSPRCLVAH 338
Query: 344 HTETSVSYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNA 400
H + V Y L+ P ++ + + D Q L R D + A+R
Sbjct: 339 HDDYCVWYSLQRTSPDENDSAYQVRPVCDCQAHLLWNRPRFGEINDQDRTDHYAQALRTV 398
Query: 401 -LQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459
L G V C+ D L++ L V ++ + + ++ + N D+
Sbjct: 399 LLPGSV---CLCVSDGSLLSMLAHHLG-AEQVFTVESSVA--SYRLMKRIFKVNHLE-DK 451
Query: 460 VEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519
+ ++ K + LT D + KKV LL+GEP++ +LPW NL FW R+ +D L+ +
Sbjct: 452 ISVINKRPELLTAADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTSVDQHLAPGAV 509
Query: 520 IMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTW 579
+MP L A + D+W R EGFD +++ + D ++ P + +
Sbjct: 510 VMPQAASLHAVIVEFRDLWRIRSPCGDCEGFDVHIMDDMIKHSLDFRESREAEPHPLWEY 569
Query: 580 QCGEIKKLSNVFTVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSI--- 636
C + K + T +F P P Q K +E T PG HG LW+++ L +++I
Sbjct: 570 PCRSLSKPQEILT-FDFQQPIPQQPMQSKGTMELTRPGKSHGAVLWMEYQLTPDSTISTG 628
Query: 637 VISTGPDK------RYWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQ 690
+I+ DK + KQ V ++ + + +G + S +VE F P G++ ++
Sbjct: 629 LINPAEDKGDCCWNPHCKQAVYFLSTTLDLRVPLNGPRSV--SYVVE--FHPLTGDITME 684
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
| >sp|Q99MI9|ANM7_CRILO Protein arginine N-methyltransferase 7 OS=Cricetulus longicaudatus GN=Prmt7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 201/665 (30%), Positives = 305/665 (45%), Gaps = 66/665 (9%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMV 64
++F + +P TG+ EW+ +E+ D + +A +SY DML+D RN Y I V
Sbjct: 2 KVFCGRANPTTGSLEWLEEDEHYDYHQE-----IARSSYADMLHDKDRNIKYYQGIRAAV 56
Query: 65 TK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ VLDIG GTGLLSMMA A A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTAGAD-----------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDLPCRANILVTELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVP-------AGMDSI 228
L+ EN VP + T Y QLVES +W + L+ + +L + +VP G S+
Sbjct: 166 LVQENCEAVPHKATVYAQLVESRRMWSWNKLFPVHVQTSLGEQVIVPPSELERCPGAPSV 225
Query: 229 LHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAE-LQIKSTDDGRVHAVV 287
++ Q + + LS+ +F DF K+ S Q G+ V+
Sbjct: 226 YDIQLNQVP------STDFTALSDVLPMFSVDFSKQVSSSAACHSKQFVPLASGQAQVVL 279
Query: 288 SWWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343
SWW +++D EG I + AP W T W DHW QCV+F+P + + +G A
Sbjct: 280 SWWDIEMDPEGKITCTMAPFWAQTNPQELQWRDHWMQCVYFLPQEE-PVVQGSPRCLVAH 338
Query: 344 HTETSVSYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNA 400
H + V Y L+ +E + + D Q L R D + A+R
Sbjct: 339 HDDYCVWYSLQRTSADENEEVYQVRPVCDCQAHLLWNRPRFGEINDQDRTDQYAQALRTV 398
Query: 401 LQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQY--LRTVADPNCFSID 458
L LCV + L + V S A Y ++ + N D
Sbjct: 399 LMPGTICLCVSDGSLLSLLAHHLGAEQVFTVES-------SAASYRLMKRIFKANHLE-D 450
Query: 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518
+V I++K + LT D + KKV LL+GEP++ + +LPW NL FW R+ +D L
Sbjct: 451 KVSIIKKRPELLTSADLEGKKVSLLLGEPFFATS--LLPWHNLYFWYARTSVDQHLEPGA 508
Query: 519 IIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFT 578
++MP L A + D+W R EGFD +++ + D ++ P +
Sbjct: 509 VVMPQAASLYAMIVEFRDLWRIRSPCGDCEGFDVHIMDDMIKHSLDFRESREAEPHPLWE 568
Query: 579 WQCGEIKKLSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSI 636
+ C + LS ++ FDF +P+ P + +E PG HG LW+++ L +++
Sbjct: 569 YPC---RSLSEPQQILTFDFQQPVPQKPVHAEGSMELRRPGKSHGAVLWMEYHLTPDST- 624
Query: 637 VISTG 641
+STG
Sbjct: 625 -VSTG 628
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Cricetulus longicaudatus (taxid: 10030) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
| >sp|Q5U4E8|ANM7_RAT Protein arginine N-methyltransferase 7 OS=Rattus norvegicus GN=Prmt7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 203/717 (28%), Positives = 325/717 (45%), Gaps = 65/717 (9%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMV 64
++F + +P TG+ EW+ +E+ D + +A +SY DML+D RN Y I V
Sbjct: 2 KVFCGRANPTTGSLEWLEEDEHYDYHQE-----IARSSYADMLHDKDRNIKYYQGIRAAV 56
Query: 65 TK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ VLDIG GTGLLSMMA A A E + PM + K
Sbjct: 57 SRVKDKGQKALVLDIGTGTGLLSMMAVTAGAD-----------FCYAVEVFKPMAEAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDLPCRANILVTELFDTELIGEGALPSYEHAHKH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVP-------AGMDSI 228
L+ E+ VP R T Y QLVES +W + L+ + L + ++P G S+
Sbjct: 166 LVQEDCEAVPHRATVYAQLVESKRMWSWNKLFPVRVQTGLGEQLIIPPSELERCPGAPSV 225
Query: 229 LHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAE-LQIKSTDDGRVHAVV 287
++ Q + + +LS+ +F DF K+ S Q G+ V+
Sbjct: 226 YDIQLNQVS------PADFTVLSDVLPMFSVDFSKQVSSSAACHSKQFVPLASGQAQVVL 279
Query: 288 SWWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343
SWW +++D EG I + AP W T W DHW QCV+F+P + I +G A
Sbjct: 280 SWWDIEMDPEGKIKCTMAPFWAQTDPQELQWRDHWMQCVYFLPQEE-PIMQGSPRCLAAH 338
Query: 344 HTETSVSYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNA 400
H + V Y L+ P + + + D Q L R D + A+R
Sbjct: 339 HDDYCVWYSLQRTSPDENNSAYQVRPVCDCQAHLLWNRPRFGEINDQDRTDHYARALRTM 398
Query: 401 LQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRV 460
L +C+ D L++ L V ++ + + ++ + N D++
Sbjct: 399 LMP--GSICLCVSDGSLLSVLAHHLG-AEQVFTVESSVA--SYRLMKRIFKVNHLE-DKI 452
Query: 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520
++ K + LT D + KKV LL+GEP++ +LPW NL FW R+ +D L+ ++
Sbjct: 453 TVINKRPELLTSADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTSVDQHLAPGAVV 510
Query: 521 MPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQ 580
MP L A + D+W R EGFD +++ + D ++ P + +
Sbjct: 511 MPQAASLHAVIVEFRDLWRIRSPCGDCEGFDVHIMDDMIKHSLDFRESREAEPQPLWEYP 570
Query: 581 CGEIKKLSNVFTVMEFDFSKPISPCQGKVQ--VEFTEPGLCHGFALWIDWVLDSENSI-- 636
C + LS ++ FDF +PI + + +E PG HG LW+++ L ++++
Sbjct: 571 C---RSLSEPRQILTFDFQQPIPQQPMQSRGVMELRRPGKSHGAVLWMEYQLTPDSTVST 627
Query: 637 -VISTGPDKR--YWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQ 690
+++ DK W K ++ + S D S F P G++ ++
Sbjct: 628 GLMNPAEDKGDCCWNPHCKQAVYFLSATLDPSAPLDGPQSVSYAVEFHPLTGDITME 684
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being recruited by CTCFL at the H19 imprinted control region (ICR) and methylating histone H4 to form H4R3me2s, possibly leading to recruit DNA methyltransferases at these sites. May also play a role in embryonic stem cell (ESC) pluripotency. Also able to mediate the arginine methylation of histone H2A and myelin basic protein (MBP) in vitro; the relevance of such results is however unclear in vivo. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 694 | ||||||
| 359474371 | 724 | PREDICTED: protein arginine N-methyltran | 0.998 | 0.957 | 0.731 | 0.0 | |
| 297741194 | 738 | unnamed protein product [Vitis vinifera] | 0.998 | 0.939 | 0.717 | 0.0 | |
| 224071063 | 699 | predicted protein [Populus trichocarpa] | 0.987 | 0.979 | 0.702 | 0.0 | |
| 255576060 | 697 | protein arginine n-methyltransferase, pu | 0.982 | 0.978 | 0.701 | 0.0 | |
| 449469390 | 738 | PREDICTED: protein arginine N-methyltran | 0.989 | 0.930 | 0.682 | 0.0 | |
| 356514280 | 696 | PREDICTED: protein arginine N-methyltran | 0.976 | 0.974 | 0.673 | 0.0 | |
| 357476863 | 869 | Protein arginine N-methyltransferase [Me | 0.955 | 0.762 | 0.663 | 0.0 | |
| 297804524 | 729 | predicted protein [Arabidopsis lyrata su | 0.985 | 0.938 | 0.623 | 0.0 | |
| 18414696 | 724 | protein arginine N-methyltransferase 7 [ | 0.976 | 0.936 | 0.627 | 0.0 | |
| 300669612 | 720 | RecName: Full=Protein arginine N-methylt | 0.962 | 0.927 | 0.588 | 0.0 |
| >gi|359474371|ref|XP_002266419.2| PREDICTED: protein arginine N-methyltransferase 1.6-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/693 (73%), Positives = 586/693 (84%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
S QR+FQLKLDPLTGNSEWVVI+E + V E+ EPLL+TTSYLDMLNDS RNRA+R AID
Sbjct: 32 SAQRLFQLKLDPLTGNSEWVVIDEEDQVSENPSEPLLSTTSYLDMLNDSRRNRAFREAID 91
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K VTK+C VLDIGAGTGLLSMMAARAMGS DS T+GMVTACESYLPMVKLM+KVLH
Sbjct: 92 KTVTKNCRVLDIGAGTGLLSMMAARAMGSGDSVACPRTEGMVTACESYLPMVKLMRKVLH 151
Query: 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181
+NGMGR I VINKRSDEL +GVDI SRAD+LVSEILDSELLGEGLIPTLQHAHD LLVEN
Sbjct: 152 LNGMGRKINVINKRSDELNIGVDITSRADVLVSEILDSELLGEGLIPTLQHAHDMLLVEN 211
Query: 182 PLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCD 241
TVP R TTYGQLVES FLWKLHDLYNNEAKALD++ LVPAG ++IL +K QQYAMHCD
Sbjct: 212 AKTVPYRATTYGQLVESKFLWKLHDLYNNEAKALDNVCLVPAGQETILSIKQQQYAMHCD 271
Query: 242 AITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIF 301
AI +EIKLLSEPFKIFEFDF KRPDSH E EL IK+ D+G VHAVVSWW+LQLD EGTIF
Sbjct: 272 AIKEEIKLLSEPFKIFEFDFSKRPDSHEETELHIKAIDNGSVHAVVSWWILQLDCEGTIF 331
Query: 302 YSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELKSQIPITD 361
YSTAP+WIS G+WCDHWKQCVWFIPGKG+ + K EE+ HA+HT+ S+SY LK+Q+ T+
Sbjct: 332 YSTAPKWISAGDWCDHWKQCVWFIPGKGIYVSKHEEVHLHAIHTDISISYNLKTQLSRTE 391
Query: 362 ERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDSVFLTIC 421
QH+L A+D QL L PER+AIYGD EWRLSM+ A++N LQG+V LCVV DDS+FL I
Sbjct: 392 IGQHDLFARDSQLILSPERVAIYGDSEWRLSMLTAIKNTLQGKVISLCVVTDDSIFLAIL 451
Query: 422 VARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481
+A LS+T+HV+SL PGL DKG QYL+ VAD N FS+DRVE+LQ K CLT DT+QKKVD
Sbjct: 452 IAHLSRTSHVISLFPGLRDKGTQYLQAVADVNGFSMDRVEVLQNWKTCLTTLDTRQKKVD 511
Query: 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSR 541
LLIGEP+Y+GN+GMLPWQNLRFWKER+ L+ VLS++V+IMP KGIL+ACA+ PD+WNSR
Sbjct: 512 LLIGEPFYYGNEGMLPWQNLRFWKERTMLNSVLSEDVVIMPCKGILRACAMSLPDLWNSR 571
Query: 542 RSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKP 601
R L+KIEG DH+VVN +LGACGDLP ++GPCLP+F WQCGEIK+LS + TVMEFDFSKP
Sbjct: 572 RCLNKIEGLDHSVVNATLGACGDLPEAQEGPCLPYFVWQCGEIKELSEILTVMEFDFSKP 631
Query: 602 ISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVKLMAKPVAVG 661
I+PC GK VEFTE G+CHGF LWIDWV+D+EN V+ TGP RYWKQGVKL++KP++VG
Sbjct: 632 INPCSGKAMVEFTETGICHGFVLWIDWVMDAENCTVLPTGPVHRYWKQGVKLLSKPISVG 691
Query: 662 FEESGRTDLCSSTLVEASFDPSNGELNVQHTFS 694
F S T C ST +EASFDPS+GEL V+HT S
Sbjct: 692 FHGSESTSGCFSTEIEASFDPSSGELIVKHTLS 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741194|emb|CBI31925.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/707 (71%), Positives = 586/707 (82%), Gaps = 14/707 (1%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
S QR+FQLKLDPLTGNSEWVVI+E + V E+ EPLL+TTSYLDMLNDS RNRA+R AID
Sbjct: 32 SAQRLFQLKLDPLTGNSEWVVIDEEDQVSENPSEPLLSTTSYLDMLNDSRRNRAFREAID 91
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K VTK+C VLDIGAGTGLLSMMAARAMGS DS T+GMVTACESYLPMVKLM+KVLH
Sbjct: 92 KTVTKNCRVLDIGAGTGLLSMMAARAMGSGDSVACPRTEGMVTACESYLPMVKLMRKVLH 151
Query: 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181
+NGMGR I VINKRSDEL +GVDI SRAD+LVSEILDSELLGEGLIPTLQHAHD LLVEN
Sbjct: 152 LNGMGRKINVINKRSDELNIGVDITSRADVLVSEILDSELLGEGLIPTLQHAHDMLLVEN 211
Query: 182 PLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCD 241
TVP R TTYGQLVES FLWKLHDLYNNEAKALD++ LVPAG ++IL +K QQYAMHCD
Sbjct: 212 AKTVPYRATTYGQLVESKFLWKLHDLYNNEAKALDNVCLVPAGQETILSIKQQQYAMHCD 271
Query: 242 AITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIF 301
AI +EIKLLSEPFKIFEFDF KRPDSH E EL IK+ D+G VHAVVSWW+LQLD EGTIF
Sbjct: 272 AIKEEIKLLSEPFKIFEFDFSKRPDSHEETELHIKAIDNGSVHAVVSWWILQLDCEGTIF 331
Query: 302 YSTAPRWIS--------------TGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTET 347
YSTAP+WIS G+WCDHWKQCVWFIPGKG+ + K EE+ HA+HT+
Sbjct: 332 YSTAPKWISVPFNINKSQTPFSSAGDWCDHWKQCVWFIPGKGIYVSKHEEVHLHAIHTDI 391
Query: 348 SVSYELKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQP 407
S+SY LK+Q+ T+ QH+L A+D QL L PER+AIYGD EWRLSM+ A++N LQG+V
Sbjct: 392 SISYNLKTQLSRTEIGQHDLFARDSQLILSPERVAIYGDSEWRLSMLTAIKNTLQGKVIS 451
Query: 408 LCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467
LCVV DDS+FL I +A LS+T+HV+SL PGL DKG QYL+ VAD N FS+DRVE+LQ K
Sbjct: 452 LCVVTDDSIFLAILIAHLSRTSHVISLFPGLRDKGTQYLQAVADVNGFSMDRVEVLQNWK 511
Query: 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGIL 527
CLT DT+QKKVDLLIGEP+Y+GN+GMLPWQNLRFWKER+ L+ VLS++V+IMP KGIL
Sbjct: 512 TCLTTLDTRQKKVDLLIGEPFYYGNEGMLPWQNLRFWKERTMLNSVLSEDVVIMPCKGIL 571
Query: 528 KACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKL 587
+ACA+ PD+WNSRR L+KIEG DH+VVN +LGACGDLP ++GPCLP+F WQCGEIK+L
Sbjct: 572 RACAMSLPDLWNSRRCLNKIEGLDHSVVNATLGACGDLPEAQEGPCLPYFVWQCGEIKEL 631
Query: 588 SNVFTVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYW 647
S + TVMEFDFSKPI+PC GK VEFTE G+CHGF LWIDWV+D+EN V+ TGP RYW
Sbjct: 632 SEILTVMEFDFSKPINPCSGKAMVEFTETGICHGFVLWIDWVMDAENCTVLPTGPVHRYW 691
Query: 648 KQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQHTFS 694
KQGVKL++KP++VGF S T C ST +EASFDPS+GEL V+HT S
Sbjct: 692 KQGVKLLSKPISVGFHGSESTSGCFSTEIEASFDPSSGELIVKHTLS 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071063|ref|XP_002303351.1| predicted protein [Populus trichocarpa] gi|222840783|gb|EEE78330.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/703 (70%), Positives = 585/703 (83%), Gaps = 18/703 (2%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIE----ENEDVPESSQEPLLATTSYLDMLNDSYRNRAYR 57
STQR+FQLKLDPLTGNSEWV+IE E E+ +SS LLATTSYLDMLND RNRA+R
Sbjct: 5 STQRVFQLKLDPLTGNSEWVIIEDGNKEEEETFKSSSHALLATTSYLDMLNDDTRNRAFR 64
Query: 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMK 117
AIDK +TK CHVLDIGAGTGLLSMMAARAMG+ D N KGMVTACESYLPMVKLM+
Sbjct: 65 EAIDKTITKPCHVLDIGAGTGLLSMMAARAMGTCDD----NKKGMVTACESYLPMVKLMR 120
Query: 118 KVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
KVL++NGMG+N+K+ NKRSDEL+V +DI SRAD+LVSEILDSELLGEGLIPTLQHAHD L
Sbjct: 121 KVLNLNGMGKNVKIFNKRSDELQVDIDIPSRADVLVSEILDSELLGEGLIPTLQHAHDML 180
Query: 178 LVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYA 237
LV+NPLTVP R TTYGQLVESTFLWKLHDL NNE +A D I LVPAG+D+IL VK++Q+
Sbjct: 181 LVDNPLTVPYRATTYGQLVESTFLWKLHDLSNNEEEASDGIRLVPAGLDTILCVKAKQHP 240
Query: 238 MHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDRE 297
MHCDAI+KEI LLSEPFKIFEFDFWKRPDS G+++L IK+T+DGR+HAVVSWW+LQLD E
Sbjct: 241 MHCDAISKEINLLSEPFKIFEFDFWKRPDSQGDSKLLIKATNDGRIHAVVSWWILQLDSE 300
Query: 298 GTIFYSTAPRWIS------TGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSY 351
GTIFYSTAPRWI+ TGNWCDHWKQCVWFIPG+G+ I KGEE+ HA+H++TSVSY
Sbjct: 301 GTIFYSTAPRWITSPIATHTGNWCDHWKQCVWFIPGEGIPISKGEEVHLHAVHSDTSVSY 360
Query: 352 ELKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVV 411
L +Q T+ R+ + A D L L PERIAIYGD +WR M+ A+ N LQ RV PLCVV
Sbjct: 361 NLATQ--ATEIRECDSIAGDSHLTLSPERIAIYGDRKWRSCMLTALNNLLQARVHPLCVV 418
Query: 412 ADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471
ADDSVFL++ VA LSKT++V++L PGL ++G QYL+ VAD N + DR+E+ QK KK LT
Sbjct: 419 ADDSVFLSLLVAHLSKTSNVIALFPGLRERGVQYLKAVADVNGITADRIEVFQK-KKYLT 477
Query: 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACA 531
++DT+QKKVDLLIGEPYY+GNDGMLPWQN RFWKER+ LD VL+++V++MP K +LKACA
Sbjct: 478 LNDTKQKKVDLLIGEPYYYGNDGMLPWQNFRFWKERTMLDSVLAEDVLVMPCKAMLKACA 537
Query: 532 IFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVF 591
+ PD+W S R LSKIE FDH++VN +LGACGDLPAP +GP LPFF WQCGE K+LS F
Sbjct: 538 MSLPDLWKSHRCLSKIEDFDHSIVNNTLGACGDLPAPLEGPLLPFFIWQCGETKELSETF 597
Query: 592 TVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGV 651
T+MEFDFSK I PC GK QVEFTE G+CHGF LWIDWV+D++NS+V++TGPD+RYWKQGV
Sbjct: 598 TIMEFDFSKSIGPCYGKAQVEFTEQGMCHGFVLWIDWVMDAKNSVVLTTGPDERYWKQGV 657
Query: 652 KLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQHTFS 694
KL+++PVAVG S T C STL+EASFDPS+GEL V+H +S
Sbjct: 658 KLLSQPVAVGGRGSS-TGNCCSTLIEASFDPSSGELAVKHVWS 699
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576060|ref|XP_002528925.1| protein arginine n-methyltransferase, putative [Ricinus communis] gi|223531627|gb|EEF33454.1| protein arginine n-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/699 (70%), Positives = 574/699 (82%), Gaps = 17/699 (2%)
Query: 4 QRMFQLKLDPLTGNSEWVVIEENEDVPE--SSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
++MFQLKLDPLTG SEW++I ENE+ + LLATTSYLDMLNDS RNRA+R AID
Sbjct: 8 KQMFQLKLDPLTGKSEWIIITENEEEETFGNPNRNLLATTSYLDMLNDSARNRAFREAID 67
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K++TK CHVLDIGAGTGLLSMMAARAM S + + +G VTACESYLPMVK+M+KVLH
Sbjct: 68 KVITKPCHVLDIGAGTGLLSMMAARAMRSGEES-----RGTVTACESYLPMVKMMRKVLH 122
Query: 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181
VNGMGR I V NKRSDEL+VGVDI SRAD+LVSEILDSELLGEGLIP+LQHAHD LLV+N
Sbjct: 123 VNGMGRTINVFNKRSDELKVGVDIPSRADVLVSEILDSELLGEGLIPSLQHAHDMLLVDN 182
Query: 182 PLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCD 241
PLTVP R TTYGQLVESTFLWKLHDLY+NEAKA D+I LVP G+D+IL VK QQ M+CD
Sbjct: 183 PLTVPYRATTYGQLVESTFLWKLHDLYDNEAKASDNIRLVPTGLDTILRVKLQQNPMNCD 242
Query: 242 AITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIF 301
AI+KEIKLLSEPFKIFEFDFWKRPDSHGE E+ IK+T+DG VHAV+SWW+LQLD EGTIF
Sbjct: 243 AISKEIKLLSEPFKIFEFDFWKRPDSHGETEVLIKATNDGTVHAVISWWMLQLDCEGTIF 302
Query: 302 YSTAPRW------ISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELKS 355
YSTAP+W I T NWCDHWKQC WF+PGKG+ + KGE+LL HA HT+T+V Y +
Sbjct: 303 YSTAPKWIGSPTNIGTSNWCDHWKQCTWFLPGKGIQVGKGEQLLLHATHTDTNVFYNI-- 360
Query: 356 QIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS 415
+I T+ RQHN A DF L LPPER+AIYGD EWR SM+ A+RNALQ +VQPLC+VADDS
Sbjct: 361 EIQDTEVRQHNFTAGDFHLILPPERLAIYGDSEWRSSMLTALRNALQEKVQPLCIVADDS 420
Query: 416 VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475
+F T+ +A LSKTAHV+SL PGL +KG+QYL+TVAD N F DRV + KCLT+ DT
Sbjct: 421 LFATLALAHLSKTAHVISLFPGLREKGSQYLQTVADANDFKTDRVNVFLN-NKCLTLQDT 479
Query: 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCP 535
QKKVDLLIGEPYY+GNDGMLPWQ LRFWK R+ LD +LS +++IMP K LKACA+ P
Sbjct: 480 NQKKVDLLIGEPYYYGNDGMLPWQYLRFWKTRTMLDSILSNDILIMPCKARLKACAMSLP 539
Query: 536 DIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVME 595
D+WNSR SLSKIEGFDH+VVNT++GACGD+ P +GP +P F WQ GE+K+LS FTVME
Sbjct: 540 DLWNSRCSLSKIEGFDHSVVNTTIGACGDVSPPHEGPLVPVFLWQSGEVKELSERFTVME 599
Query: 596 FDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVKLMA 655
F+FSK ISPC GK+QV+FTEPG+CHGFALWIDWV+D+++S+V+S GPD RYWKQGVKL+A
Sbjct: 600 FEFSKLISPCYGKIQVKFTEPGMCHGFALWIDWVMDAKHSVVLSAGPDHRYWKQGVKLLA 659
Query: 656 KPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQHTFS 694
PV V ES D CS+ ++EASFD SNGEL + H FS
Sbjct: 660 HPVLVAGPESTGGDCCSA-VIEASFDASNGELTINHAFS 697
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469390|ref|XP_004152403.1| PREDICTED: protein arginine N-methyltransferase 1.6-like [Cucumis sativus] gi|449513269|ref|XP_004164280.1| PREDICTED: protein arginine N-methyltransferase 1.6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/699 (68%), Positives = 564/699 (80%), Gaps = 12/699 (1%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEEN-EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAI 60
STQR+FQL+ DPLTGNSEWVVIEE E VPE+SQ+PLLATTSYLDMLNDS RNRA+ AI
Sbjct: 44 STQRLFQLRFDPLTGNSEWVVIEEEAEGVPENSQKPLLATTSYLDMLNDSTRNRAFCEAI 103
Query: 61 DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL 120
DK ++K CHVLDIGAGTGLLSMMAARAM DS + KGMVTACESYLPMVKLM+KVL
Sbjct: 104 DKTISKPCHVLDIGAGTGLLSMMAARAM---DSVIG-DCKGMVTACESYLPMVKLMRKVL 159
Query: 121 HVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
+NGM R +KVINKRSDE + G D SRAD LVSEILDSELLGEGLIPTLQHAHD+LLVE
Sbjct: 160 RLNGMERKVKVINKRSDEFQFGADFTSRADALVSEILDSELLGEGLIPTLQHAHDKLLVE 219
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NPLTVP R T YGQLVEST+LWKLHDL NNEAKA D IHLVP G D I+ VK QQYAMHC
Sbjct: 220 NPLTVPYRATIYGQLVESTYLWKLHDLRNNEAKACDGIHLVPVG-DPIICVKPQQYAMHC 278
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DAI E+KLLSEPF++FEFDFWKRP+SH E E+ +K+TD GRVHAVVSWW LQLDREGTI
Sbjct: 279 DAIANEVKLLSEPFRVFEFDFWKRPESHAENEVHVKATDSGRVHAVVSWWTLQLDREGTI 338
Query: 301 FYSTAPRWIS------TGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELK 354
FYSTAP+WIS G+WCDHWKQCVWFIPG G+SI K E++ A H +T+ SY LK
Sbjct: 339 FYSTAPKWISPPYNAGAGDWCDHWKQCVWFIPGNGVSISKEEKVHLCASHNDTTFSYHLK 398
Query: 355 SQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADD 414
+QIP + +H +NA++F+L LPPERIA+YGD EWRL+M+ A++ ALQGR C++ADD
Sbjct: 399 AQIPGGEILKHGVNAENFKLILPPERIAVYGDREWRLAMLTAIKTALQGRAPSACMIADD 458
Query: 415 SVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474
SVFLT+ VA LSK VLSL PG+ +KG +YL+ V+ N +D +++++K K CLT+ D
Sbjct: 459 SVFLTLMVACLSKKTLVLSLFPGIREKGTKYLQAVSRVNGICMDSIKVIEKRKSCLTIHD 518
Query: 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFC 534
T +KKVDLLI EP+Y+GND LPW NLRFWKER+ LDPVLS +V+IMP KGIL+AC +
Sbjct: 519 TFEKKVDLLISEPFYYGNDNALPWHNLRFWKERTMLDPVLSDDVLIMPSKGILRACFMSL 578
Query: 535 PDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVM 594
PD+W+SRR L IEGFDH+V N +LGACG P ++GP L F+ WQCGE ++LS +FT+M
Sbjct: 579 PDLWSSRRRLGTIEGFDHSVTNDTLGACGKSPEGQEGPFLAFYIWQCGEHEELSEIFTLM 638
Query: 595 EFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVKLM 654
EFDFSKPISPC GK QV+ T+ G+CHG LWIDW++DS+NSIVISTGPDKRYWKQGVKL+
Sbjct: 639 EFDFSKPISPCSGKSQVKVTKAGICHGIVLWIDWLIDSKNSIVISTGPDKRYWKQGVKLL 698
Query: 655 AKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQHTF 693
A PVAVG +SG C S +EASFDPS GEL ++H+F
Sbjct: 699 ADPVAVGPRDSGEGIECCSAAIEASFDPSTGELELRHSF 737
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514280|ref|XP_003525834.1| PREDICTED: protein arginine N-methyltransferase 1.6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/698 (67%), Positives = 550/698 (78%), Gaps = 20/698 (2%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESS----QEPLLATTSYLDMLNDSYRNRAYR 57
STQRMFQLKLDP+TGNSEWVVIE+N+D ES +PLLATTSYLDMLNDS RN A+R
Sbjct: 4 STQRMFQLKLDPITGNSEWVVIEDNDDGDESFAHNFHQPLLATTSYLDMLNDSPRNTAFR 63
Query: 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMK 117
AI K +TK CHVLDIGAGTGLLSMMAARAMG +G VTACESYLPMVKLMK
Sbjct: 64 QAIQKTITKPCHVLDIGAGTGLLSMMAARAMGD---------EGRVTACESYLPMVKLMK 114
Query: 118 KVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
KVL +NGM +KVINKRSDELEVG+DI SRAD LVSEILDSELLGEGLIPTLQHAHD L
Sbjct: 115 KVLRINGMEGRVKVINKRSDELEVGLDIPSRADALVSEILDSELLGEGLIPTLQHAHDNL 174
Query: 178 LVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYA 237
LVEN LTVP R TTYGQLVESTFLW+LHDL++ EA D I L P G+DS+L VK QQYA
Sbjct: 175 LVENALTVPYRATTYGQLVESTFLWQLHDLHSIEATVSDGIQLTPPGLDSVLSVKRQQYA 234
Query: 238 MHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDRE 297
MHC+ I +EIKLLSEPFKIFEFDFWKRP+S GE EL +K+T+DGR+HAVVSWWVLQLDRE
Sbjct: 235 MHCNPIQEEIKLLSEPFKIFEFDFWKRPESSGETELCVKATNDGRIHAVVSWWVLQLDRE 294
Query: 298 GTIFYSTAPRWISTGN------WCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSY 351
GTI+YSTAPRWIS+ WCDHWKQCVWF+PG G+SI KGEE+ HA HTETS+SY
Sbjct: 295 GTIYYSTAPRWISSPTITSPVGWCDHWKQCVWFVPGSGISIFKGEEIHLHATHTETSISY 354
Query: 352 ELKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVV 411
L +Q+P ++ H D QL LPPER+AIYGD WRLSM+ A+++ LQGR PLC+V
Sbjct: 355 NLDTQVPTSEILNHRCMTGDLQLVLPPERVAIYGDKGWRLSMLKAVQSMLQGRDHPLCLV 414
Query: 412 ADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471
ADDSVFL + VA+LS+ +HV+SLLPGL ++G QYL+ A N S + +E+L+K K LT
Sbjct: 415 ADDSVFLPLLVAQLSEASHVMSLLPGLKERGLQYLQAAAHANGLSRNCIEVLEKRVKQLT 474
Query: 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACA 531
M D QKKVDLLI EP+Y G+DGMLPWQNLRFWK+R+ L+ +LS++ +I+P KGIL+ACA
Sbjct: 475 MHDIHQKKVDLLIAEPFYVGHDGMLPWQNLRFWKDRTTLNDILSEDALIIPSKGILRACA 534
Query: 532 IFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVF 591
I PD+W SR LS +EGFDH+VVN +LGAC +LP ++GPCLPFF WQCGE LS F
Sbjct: 535 ISLPDLWKSRCCLSNVEGFDHSVVNATLGACSNLPELEEGPCLPFFVWQCGEFDVLSETF 594
Query: 592 TVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGV 651
VMEFDFSK I CQGK QV+FT+ G+CHGF LWIDWV+D +NS+VISTGPD+RYWKQGV
Sbjct: 595 DVMEFDFSKQICLCQGKSQVKFTKTGVCHGFVLWIDWVMDLQNSVVISTGPDRRYWKQGV 654
Query: 652 KLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNV 689
KL+ P VG + S CS+ L EA F+P GEL +
Sbjct: 655 KLLGTPRTVGPQRSRNVQACSAVL-EACFNPLQGELKI 691
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476863|ref|XP_003608717.1| Protein arginine N-methyltransferase [Medicago truncatula] gi|355509772|gb|AES90914.1| Protein arginine N-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/680 (66%), Positives = 534/680 (78%), Gaps = 17/680 (2%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQ--EPLLATTSYLDMLNDSYRNRAYRLA 59
S+QRMFQLK DPLTGNSEWV+I+E++D ++ Q +PLLATTSYLDMLNDS RN A+R A
Sbjct: 5 SSQRMFQLKFDPLTGNSEWVIIDEDDDDEQTFQFHQPLLATTSYLDMLNDSTRNTAFREA 64
Query: 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119
I+K +T+ CHVLDIGAGTGLLSMMA+RAMG KG VTACESYLPMVKLMKKV
Sbjct: 65 IEKTITEPCHVLDIGAGTGLLSMMASRAMGG---------KGTVTACESYLPMVKLMKKV 115
Query: 120 LHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLV 179
+ +NG+ IKVINKRSDELEVGVD+ S AD+LVSEILDSELLGEGLIPTLQHAHD LLV
Sbjct: 116 MRINGLEGRIKVINKRSDELEVGVDLSSCADVLVSEILDSELLGEGLIPTLQHAHDNLLV 175
Query: 180 ENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMH 239
ENPLTVP R TTYGQLVESTFLW+LHDL++NEA A D I L P G++S+L VK QQYAMH
Sbjct: 176 ENPLTVPYRATTYGQLVESTFLWRLHDLHSNEAGASDGIRLTPPGLESVLSVKRQQYAMH 235
Query: 240 CDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGT 299
D I +E+K LSEPFKIFEFDFWKRP+S+GE EL I +TDDGRVHAVVSWWVLQLDREGT
Sbjct: 236 VDPIGEELKPLSEPFKIFEFDFWKRPESYGETELCINATDDGRVHAVVSWWVLQLDREGT 295
Query: 300 IFYSTAPRWI------STGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYEL 353
I+YSTAPRWI S +WCDHWKQCVWF+PG G+S+ KGEE+ HA H +TS+SY L
Sbjct: 296 IYYSTAPRWIRSPTTTSPVDWCDHWKQCVWFVPGSGISVSKGEEIHLHATHNDTSISYNL 355
Query: 354 KSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVAD 413
+Q+ ++ L DFQL LPPER AIYGD WRLSM+ A+ + LQGR LC+VAD
Sbjct: 356 DTQVSTNEDLHRGLTTGDFQLVLPPERAAIYGDKGWRLSMLKAVESVLQGRRPSLCLVAD 415
Query: 414 DSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473
DSVFL + VA++S+ +HV+S P L + G +YL+ A N S + +E++ KG K LTM
Sbjct: 416 DSVFLPLLVAKISEASHVISSFPRLKENGLRYLQAAACANNISPNSIEVVGKGVKKLTMH 475
Query: 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIF 533
DT QKKVDLLI EP+YFG+D MLPWQNLRFWK+R+ LD +LS++ II+P KGIL+ACAI
Sbjct: 476 DTNQKKVDLLIAEPFYFGHDSMLPWQNLRFWKDRTTLDYILSEDAIIIPSKGILRACAIH 535
Query: 534 CPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTV 593
PD+W SR L+KIEGFDH+ VN +LGACG LP ++GPCLPFF WQ GE LS F V
Sbjct: 536 LPDLWKSRCCLNKIEGFDHSGVNATLGACGHLPKSEEGPCLPFFPWQSGEFDVLSETFDV 595
Query: 594 MEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVKL 653
MEFDF+K I CQGK QV+FT+ G+CHGF LWIDWV+D +NS+VISTGPDKRYWKQG+KL
Sbjct: 596 MEFDFTKQICKCQGKSQVKFTKTGVCHGFVLWIDWVMDLQNSVVISTGPDKRYWKQGIKL 655
Query: 654 MAKPVAVGFEESGRTDLCSS 673
+A P VG + S C S
Sbjct: 656 LATPRTVGPQVSTSVQGCCS 675
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804524|ref|XP_002870146.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315982|gb|EFH46405.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/702 (62%), Positives = 530/702 (75%), Gaps = 18/702 (2%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
S+QR+FQL+ DPLTGNSEW+VIE+N D P +S + LLATTSYLDMLNDS RNRAYRLAI+
Sbjct: 37 SSQRVFQLRQDPLTGNSEWIVIEDN-DQPGTSTDGLLATTSYLDMLNDSRRNRAYRLAIE 95
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K +T+ CHVLDIGAGTGLLSMMA RAM + + ++KGMVTACESYLPMVKLM+KVLH
Sbjct: 96 KTITEPCHVLDIGAGTGLLSMMAVRAMRGREEESG-DSKGMVTACESYLPMVKLMRKVLH 154
Query: 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181
NGM +NI +INKRSDEL+VG DI SRAD+LVSEILDSELLGEGLIP+LQHAHD LLV+N
Sbjct: 155 KNGMTKNINLINKRSDELKVGSDIASRADVLVSEILDSELLGEGLIPSLQHAHDMLLVDN 214
Query: 182 PLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCD 241
P TVP R TTY QLVESTFL +HDL NNEAK D LVP G++S+ +KSQQY+MH D
Sbjct: 215 PKTVPYRATTYCQLVESTFLCNMHDLRNNEAKTYDGFRLVPPGLESLFGIKSQQYSMHVD 274
Query: 242 AITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIF 301
AI K+IKLLSEP KIFEFDFWKRP+S+GE ++ I++ G VHA++SWWVLQLD EGTIF
Sbjct: 275 AIEKDIKLLSEPVKIFEFDFWKRPESNGELDVHIEAITAGSVHAIISWWVLQLDSEGTIF 334
Query: 302 YSTAPRWISTG------NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELKS 355
YSTAPRWI + +WCDHWKQCVWF PG G+SI KGE++ HA HT T++ Y LK
Sbjct: 335 YSTAPRWIDSNSEIGVRDWCDHWKQCVWFTPGAGVSISKGEKVHLHAAHTCTNILYNLKK 394
Query: 356 QIPITDERQH-NLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADD 414
+T E + L+ D L L PER+AIYGD +R S+ A R ALQG+ P C+V DD
Sbjct: 395 TQSLTHEMTYFPLSTGDLHLTLSPERVAIYGDSIYRQSLFEATRKALQGKSYPQCLVIDD 454
Query: 415 SVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474
S+ L + +S + VLSL PGL + A+Y +AD N FS DR E ++GK L
Sbjct: 455 SLLLPLVALHISNRSRVLSLSPGLQENAARYFEVIADSNGFSKDRFEYFREGKANLA--K 512
Query: 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFC 534
K+DLLIGEPYY G + LPWQNLRFWK+R+ LD VLS++ ++MP+KG+L+ CA++
Sbjct: 513 AYPSKIDLLIGEPYYSGLESGLPWQNLRFWKDRTLLDSVLSEDAVVMPYKGVLRGCAMYL 572
Query: 535 PDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVM 594
PD+W SR L +EGFDHA+VNT+LG CGDLP+ KD PCLPFF WQCGE KKLS FTVM
Sbjct: 573 PDLWKSRCCLRNVEGFDHALVNTTLGGCGDLPSGKDSPCLPFFIWQCGETKKLSKEFTVM 632
Query: 595 EFDFSKPI-SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVKL 653
EFDFSKPI PC G+VQ+EF +PG+CHG ALW+DWV+D ENS VISTGPD++YWKQGVKL
Sbjct: 633 EFDFSKPIRGPCSGEVQIEFIKPGVCHGIALWMDWVMDEENSTVISTGPDEKYWKQGVKL 692
Query: 654 MAKPVAVGFEESGRTDLCSSTLVEASFD-PSNGELNVQHTFS 694
+ KPV V + SS ++AS D SN +L + HT S
Sbjct: 693 LGKPVTVRLKGPS-----SSIGIQASLDLSSNSDLIITHTIS 729
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18414696|ref|NP_567508.1| protein arginine N-methyltransferase 7 [Arabidopsis thaliana] gi|152013356|sp|Q944R7.2|ANM16_ARATH RecName: Full=Protein arginine N-methyltransferase 1.6; Short=AtPRMT16; Short=AtPRMT7 gi|332658372|gb|AEE83772.1| protein arginine N-methyltransferase 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/703 (62%), Positives = 526/703 (74%), Gaps = 25/703 (3%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
S+QR+FQL+ DPLTGNSEW+VIE+N D P +S + LLATTSYLDMLNDS RN AYRLAI+
Sbjct: 37 SSQRVFQLRQDPLTGNSEWIVIEDN-DQPGTSTDGLLATTSYLDMLNDSRRNIAYRLAIE 95
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K +T+ CHVLDIGAGTGLLSMMA RAM ++KGMVTACESYLPMVKLM+KV+H
Sbjct: 96 KTITEPCHVLDIGAGTGLLSMMAVRAMRG-------DSKGMVTACESYLPMVKLMRKVMH 148
Query: 122 VNGMGRNIKVINKRSDELEVGV-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
NGM +NI +INKRSDEL+VG DI SRAD+LVSEILDSELLGEGLIP+LQHAHD LLV+
Sbjct: 149 KNGMTKNINLINKRSDELKVGSEDIASRADVLVSEILDSELLGEGLIPSLQHAHDMLLVD 208
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NP TVP R TTY QLVESTFL L DL NNEAK D + LVP G++S+ +KSQQY+MH
Sbjct: 209 NPKTVPYRATTYCQLVESTFLCNLQDLRNNEAKTSDGVRLVPPGLESLFGIKSQQYSMHV 268
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DAI KEIKLLSEP KIFEFDFWKRP+S+GE ++ I++ G VHA++SWWVLQLD EGTI
Sbjct: 269 DAIEKEIKLLSEPVKIFEFDFWKRPESNGELDVHIEAKTTGSVHAIISWWVLQLDSEGTI 328
Query: 301 FYSTAPRWISTG------NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELK 354
FYSTAPRWI + +WCDHWKQCVWF PG G+SI KGE++ HA HT T++ Y LK
Sbjct: 329 FYSTAPRWIDSNSEIGVRDWCDHWKQCVWFTPGTGVSISKGEKVHLHASHTCTNILYNLK 388
Query: 355 SQIPITDERQH-NLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVAD 413
+T ER H L+ D L LPPER+AIYGD +R S+ A R ALQG+ P C+V D
Sbjct: 389 KTQSLTHERTHFPLSTGDLHLTLPPERVAIYGDSIYRQSLFEATRKALQGKSYPQCLVID 448
Query: 414 DSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473
DS+ L + +S + VLSL PGL + A+Y +AD N FS DR E + GK L
Sbjct: 449 DSLLLPLMALHISNRSRVLSLSPGLQENAARYFEAIADSNGFSKDRFEYFRDGKTNLA-- 506
Query: 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIF 533
K+DLLIGEPYY G + LPWQNLRFWK+R+ LD VLS++ ++MP+KG+L+ CA++
Sbjct: 507 KAYPGKIDLLIGEPYYSGLENGLPWQNLRFWKDRTLLDSVLSEDAVVMPYKGVLRGCAMY 566
Query: 534 CPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTV 593
PD+W SR L +EGFDH +VNT+LG CGDLP+ KD PCLPFF WQCGE K LS FTV
Sbjct: 567 LPDLWKSRCCLGSVEGFDHTLVNTTLGGCGDLPSGKDSPCLPFFIWQCGETKILSKEFTV 626
Query: 594 MEFDFSKPIS-PCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVK 652
MEFDFSKPI+ PC G+VQ+EF +PG+CHG ALW+DWV+D ENS VISTGPD +YWKQGVK
Sbjct: 627 MEFDFSKPITGPCSGEVQIEFIKPGVCHGIALWMDWVMDEENSTVISTGPDDKYWKQGVK 686
Query: 653 LMAKPVAVGFEESGRTDLCSSTLVEASFD-PSNGELNVQHTFS 694
L+ KPV V E SS ++AS D SN EL V HT S
Sbjct: 687 LLGKPVTVRMEGPS-----SSIGIQASLDLSSNSELIVTHTIS 724
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|300669612|sp|A2Y8B9.3|ANM7_ORYSI RecName: Full=Protein arginine N-methyltransferase 7 | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/697 (58%), Positives = 513/697 (73%), Gaps = 29/697 (4%)
Query: 5 RMFQLKLDPLTGNSEWVVIEEN---EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
R FQL+L+PLTG+SEW+V+EE + P + LLATTSYLDMLNDS RNRAYR AI+
Sbjct: 29 RAFQLRLNPLTGDSEWLVVEEEEEEDHHPTPPPKQLLATTSYLDMLNDSARNRAYRRAIE 88
Query: 62 KMVTK-SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL 120
VT S VLDIGAGTGLLSMMAARA+ + T G V+ACESYLPM KLM++VL
Sbjct: 89 AAVTDPSSRVLDIGAGTGLLSMMAARALAAVGGETR---GGSVSACESYLPMGKLMRRVL 145
Query: 121 HVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
NGM +KV +KRSDEL+VG D+DS ADILVSEILDSELLGEGLIPTLQ A+D LL +
Sbjct: 146 RANGMENRVKVFHKRSDELKVGDDLDSPADILVSEILDSELLGEGLIPTLQQAYDMLLAK 205
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NP VP R TTYGQLVESTFLWKLHDL+NNEA A D + L P M+ I+ VK QQ+AM C
Sbjct: 206 NPKIVPYRATTYGQLVESTFLWKLHDLHNNEANAADGVWLTPGEMERIVSVKPQQHAMQC 265
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DA+ EI+LLSEPFK+FEFDFWKRPDSH EA ++I++T DG VHA++SWWVLQLD G+I
Sbjct: 266 DALEDEIRLLSEPFKVFEFDFWKRPDSHREANIKIQTTRDGYVHAIISWWVLQLDSAGSI 325
Query: 301 FYSTAPRWISTG----------NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVS 350
FYSTAPRW +WCDHWKQCVWF+ GKG+ + + L A H +TS+S
Sbjct: 326 FYSTAPRWARQSSSEGPQRDMKDWCDHWKQCVWFMQGKGIPATEDQVLSLRARHNQTSIS 385
Query: 351 YELKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCV 410
Y+L I DE + ++K L L PERIA+YGD +WR +++ ++NAL + P CV
Sbjct: 386 YQLN----INDE-ACDRSSKGDHLTLLPERIALYGDKDWRSALINTIKNALTVKSSPTCV 440
Query: 411 VADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470
VADDS+FL + ++ +S T+ V+++ PGL DKGA YLR+VAD N FSID+++++ K +
Sbjct: 441 VADDSMFLALLISSMSPTSKVIAMYPGLRDKGAAYLRSVADANNFSIDQIQVIGKRASSI 500
Query: 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKAC 530
T DD + KKV+LL+GEP+Y G++GMLPWQNLRFW R+ LD +LS++ IMP KGILK C
Sbjct: 501 TADDLKHKKVNLLVGEPFYLGSEGMLPWQNLRFWSVRTLLDSMLSEDAFIMPCKGILKLC 560
Query: 531 AIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNV 590
A+ PD+W SR SL +EGFDH+VVN +LGACG LP + GPCLP++ WQCG KKLS V
Sbjct: 561 AMSLPDLWRSRSSLKDVEGFDHSVVNETLGACGYLPGDQQGPCLPYYVWQCGYTKKLSKV 620
Query: 591 FTVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQG 650
+++M+F+FS+PI C GK ++EF+ G CHGFA+WIDWVLD S+V++TGPD RYWKQG
Sbjct: 621 YSLMDFNFSEPIHSCFGKTKIEFSHDGTCHGFAVWIDWVLDERKSVVLTTGPDNRYWKQG 680
Query: 651 VKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGEL 687
V+L KPV V G+ S VEASFDPS GE+
Sbjct: 681 VQLFGKPVEV---NPGK----SVMHVEASFDPSTGEI 710
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 694 | ||||||
| TAIR|locus:2130824 | 724 | PRMT7 "protein arginine methyl | 0.976 | 0.936 | 0.631 | 7.9e-236 | |
| UNIPROTKB|Q9NVM4 | 692 | PRMT7 "Protein arginine N-meth | 0.874 | 0.877 | 0.310 | 1.1e-71 | |
| UNIPROTKB|F1PA95 | 693 | PRMT7 "Uncharacterized protein | 0.949 | 0.950 | 0.297 | 1.3e-70 | |
| MGI|MGI:2384879 | 692 | Prmt7 "protein arginine N-meth | 0.932 | 0.934 | 0.300 | 1.6e-70 | |
| RGD|1304869 | 693 | Prmt7 "protein arginine methyl | 0.948 | 0.949 | 0.292 | 2.1e-70 | |
| UNIPROTKB|Q99MI9 | 692 | Prmt7 "Protein arginine N-meth | 0.871 | 0.874 | 0.309 | 1.3e-68 | |
| UNIPROTKB|F1MQX7 | 695 | PRMT7 "Protein arginine N-meth | 0.874 | 0.873 | 0.301 | 1.3e-68 | |
| UNIPROTKB|A6QQV6 | 695 | PRMT7 "Protein arginine N-meth | 0.874 | 0.873 | 0.299 | 1.3e-68 | |
| UNIPROTKB|Q5ZIB9 | 689 | PRMT7 "Protein arginine N-meth | 0.865 | 0.872 | 0.310 | 9.2e-68 | |
| UNIPROTKB|F1ND11 | 689 | PRMT7 "Protein arginine N-meth | 0.863 | 0.869 | 0.318 | 2.4e-67 |
| TAIR|locus:2130824 PRMT7 "protein arginine methyltransferase 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2274 (805.5 bits), Expect = 7.9e-236, P = 7.9e-236
Identities = 444/703 (63%), Positives = 528/703 (75%)
Query: 2 STQRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAID 61
S+QR+FQL+ DPLTGNSEW+VIE+N D P +S + LLATTSYLDMLNDS RN AYRLAI+
Sbjct: 37 SSQRVFQLRQDPLTGNSEWIVIEDN-DQPGTSTDGLLATTSYLDMLNDSRRNIAYRLAIE 95
Query: 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121
K +T+ CHVLDIGAGTGLLSMMA RAM DS KGMVTACESYLPMVKLM+KV+H
Sbjct: 96 KTITEPCHVLDIGAGTGLLSMMAVRAM-RGDS------KGMVTACESYLPMVKLMRKVMH 148
Query: 122 VNGMGRNIKVINKRSDELEVGV-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180
NGM +NI +INKRSDEL+VG DI SRAD+LVSEILDSELLGEGLIP+LQHAHD LLV+
Sbjct: 149 KNGMTKNINLINKRSDELKVGSEDIASRADVLVSEILDSELLGEGLIPSLQHAHDMLLVD 208
Query: 181 NPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHC 240
NP TVP R TTY QLVESTFL L DL NNEAK D + LVP G++S+ +KSQQY+MH
Sbjct: 209 NPKTVPYRATTYCQLVESTFLCNLQDLRNNEAKTSDGVRLVPPGLESLFGIKSQQYSMHV 268
Query: 241 DAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTI 300
DAI KEIKLLSEP KIFEFDFWKRP+S+GE ++ I++ G VHA++SWWVLQLD EGTI
Sbjct: 269 DAIEKEIKLLSEPVKIFEFDFWKRPESNGELDVHIEAKTTGSVHAIISWWVLQLDSEGTI 328
Query: 301 FYSTAPRWISTGN------WCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELK 354
FYSTAPRWI + + WCDHWKQCVWF PG G+SI KGE++ HA HT T++ Y LK
Sbjct: 329 FYSTAPRWIDSNSEIGVRDWCDHWKQCVWFTPGTGVSISKGEKVHLHASHTCTNILYNLK 388
Query: 355 SQIPITDERQH-NLNAKDFQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVAD 413
+T ER H L+ D L LPPER+AIYGD +R S+ A R ALQG+ P C+V D
Sbjct: 389 KTQSLTHERTHFPLSTGDLHLTLPPERVAIYGDSIYRQSLFEATRKALQGKSYPQCLVID 448
Query: 414 DSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473
DS+ L + +S + VLSL PGL + A+Y +AD N FS DR E + GK L
Sbjct: 449 DSLLLPLMALHISNRSRVLSLSPGLQENAARYFEAIADSNGFSKDRFEYFRDGKTNLAK- 507
Query: 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIF 533
K+DLLIGEPYY G + LPWQNLRFWK+R+ LD VLS++ ++MP+KG+L+ CA++
Sbjct: 508 -AYPGKIDLLIGEPYYSGLENGLPWQNLRFWKDRTLLDSVLSEDAVVMPYKGVLRGCAMY 566
Query: 534 CPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTV 593
PD+W SR L +EGFDH +VNT+LG CGDLP+ KD PCLPFF WQCGE K LS FTV
Sbjct: 567 LPDLWKSRCCLGSVEGFDHTLVNTTLGGCGDLPSGKDSPCLPFFIWQCGETKILSKEFTV 626
Query: 594 MEFDFSKPIS-PCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDKRYWKQGVK 652
MEFDFSKPI+ PC G+VQ+EF +PG+CHG ALW+DWV+D ENS VISTGPD +YWKQGVK
Sbjct: 627 MEFDFSKPITGPCSGEVQIEFIKPGVCHGIALWMDWVMDEENSTVISTGPDDKYWKQGVK 686
Query: 653 LMAKPVAVGFEESGRTDLCSSTLVEASFD-PSNGELNVQHTFS 694
L+ KPV V E G + SS ++AS D SN EL V HT S
Sbjct: 687 LLGKPVTVRME--GPS---SSIGIQASLDLSSNSELIVTHTIS 724
|
|
| UNIPROTKB|Q9NVM4 PRMT7 "Protein arginine N-methyltransferase 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 204/657 (31%), Positives = 313/657 (47%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KIFCSRANPTTGSVEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNVKYYQGIRAAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ + VLDIG GTGLLSMMA A +D A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGV--DIDSRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D+ RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPEGDMPCRANILVTELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLY--NNEAKALDDIHLVPAGMDSILHVKSQ 234
L+ EN VP R T Y QLVES +W + L+ + + + + + P ++S S
Sbjct: 166 LVEENCEAVPHRATVYAQLVESGRMWSWNKLFPIHVQTSLGEQVIVPPVDVESCPGAPSV 225
Query: 235 QYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQ-IKSTDDGRVHAVVSWWVLQ 293
+ +LS+ +F DF K+ S + + GR V+SWW ++
Sbjct: 226 CDIQLNQVSPADFTVLSDVLPMFSIDFSKQVSSSAACHSRRFEPLTSGRAQVVLSWWDIE 285
Query: 294 LDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSV 349
+D EG I + AP W + W DHW QCV+F+P + + +G L A H + V
Sbjct: 286 MDPEGKIKCTMAPFWAHSDPEEMQWRDHWMQCVYFLPQEE-PVVQGSALYLVAHHDDYCV 344
Query: 350 SYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNALQGRVQ 406
Y L+ P +ER + D Q L R D + V A+R L +
Sbjct: 345 WYSLQRTSPEKNERVRQMRPVCDCQAHLLWNRPRFGEINDQDRTDRYVQALRTVL--KPD 402
Query: 407 PLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466
+C+ D L++ L V ++ + LR + N D++ I++K
Sbjct: 403 SVCLCVSDGSLLSVLAHHLG-VEQVFTVESSAASH--KLLRKIFKANHLE-DKINIIEKR 458
Query: 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526
+ LT +D Q +KV LL+GEP++ +LPW NL FW R+ +D L ++MP
Sbjct: 459 PELLTNEDLQGRKVSLLLGEPFF--TTSLLPWHNLYFWYVRTAVDQHLGPGAMVMPQAAS 516
Query: 527 LKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKK 586
L A + D+W R EGFD +++ + D ++ P + + C +
Sbjct: 517 LHAVVVEFRDLWRIRSPCGDCEGFDVHIMDDMIKRALDFRESREAEPHPLWEYPC---RS 573
Query: 587 LSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
LS + ++ FDF +P+ P + VE PG H LW+++ L E +STG
Sbjct: 574 LSEPWQILTFDFQQPVPLQPLCAEGTVELRRPGQSHAAVLWMEYHLTPE--CTLSTG 628
|
|
| UNIPROTKB|F1PA95 PRMT7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 214/720 (29%), Positives = 337/720 (46%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KVFCGRANPTTGSVEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNIKYYQGIRSAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
+M + VLDIG GTGLLSMMA A +D A E + PM K
Sbjct: 57 SRMKARGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDIDS--RADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IK+INK S E+ VG D D RA+IL++E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKIINKHSTEVTVGPDGDMPCRANILITELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKAL--DDIHLVPAGMDSILHVKSQ 234
L+ EN VP R T Y QLVES +W + L+ + + + + + P ++ S
Sbjct: 166 LVQENCEAVPHRATVYAQLVESRRMWSWNRLFPVHVQTIHGEQVIVPPLELERCPGAPSV 225
Query: 235 QYAMHCDAITK-EIKLLSEPFKIFEFDFWKRPDSHGEAEL-QIKSTDDGRVHAVVSWWVL 292
Y + + ++ + +LS+ +F DF K+ S Q + GR V+SWW +
Sbjct: 226 -YDIQLNQVSSTDFTVLSDVLPMFSVDFSKQVSSSAACHSRQFEPLASGRAQVVLSWWDI 284
Query: 293 QLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETS 348
++D EG I + AP W + W DHW QCV+F+P + + +G L A H +
Sbjct: 285 EMDPEGKIKCTMAPFWAHSDPEELQWRDHWMQCVYFLPQEE-PVVQGSSLCLVAHHDDYC 343
Query: 349 VSYELKSQIPITDERQHNLNAK---DFQLAL--PPERIAIYGDGEWRLSMVMAMRNALQG 403
V Y L+ P ++ A+ D Q L R D + V A+R L
Sbjct: 344 VWYSLQRTRPSAEKNGGVYPARPVCDCQAHLLWNRPRFGEINDQDRTDQYVQALRTML-- 401
Query: 404 RVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEIL 463
+ +C+ D L++ L V ++ + ++ + N D++ I+
Sbjct: 402 KPDSVCLCVSDGSLLSLLAHHLG-AEQVFTIESSAASH--RLMKKIFKANHLE-DKINII 457
Query: 464 QKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523
+K + LT D + KKV LL+GEP++ +LPW NL FW R+ +D L ++MP
Sbjct: 458 EKRPELLTSADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTAVDQHLGPGAVVMPQ 515
Query: 524 KGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGE 583
L A + D+W R EGFD +++ + D K+ P + + C
Sbjct: 516 AASLYAVVVEFRDLWRIRSPCGDCEGFDVHIMDDMIKRALDFRESKEAEPHPLWEYPCRS 575
Query: 584 IKKLSNVFTVMEFDFSK--PISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
+ + ++ T FDF + P P + + + PG HG LW+++ L ++++ STG
Sbjct: 576 LSEPQHILT---FDFRQLVPPHPLRAEGSINLRRPGRSHGAVLWMEYHLTPDSTV--STG 630
Query: 642 PDKRYWKQGVKLMAKP---VAVGFEESG--RTDLCSSTLV--EASFDPSNGELNVQHTFS 694
K +G P AV F + R L S V F P G++ + T +
Sbjct: 631 LLKPAEDKGDYCCWNPHCKQAVYFFTTPDCRASLSGSRTVGYTVEFHPHTGDITMDFTLA 690
|
|
| MGI|MGI:2384879 Prmt7 "protein arginine N-methyltransferase 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 217/722 (30%), Positives = 342/722 (47%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KVFCGRANPTTGSLEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNIKYYQGIRAAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ + VLDIG GTGLLSMMA A +D A E + PM + K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAIEVFKPMAEAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+IL++E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVERNGFSDKIKVINKHSTEVTVGPDGDLPCRANILITELFDTELIGEGALPSYEHAHKH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVPA-------GMDSI 228
L+ E+ VP R T Y QLVES +W + L+ + +L + +VP G S+
Sbjct: 166 LVQEDCEAVPHRATVYAQLVESRRMWSWNKLFPVRVRTSLGEQVIVPPSELERCPGAPSV 225
Query: 229 LHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAEL-QIKSTDDGRVHAVV 287
++ Q + + +LS+ +F DF K+ S Q G+ V+
Sbjct: 226 CDIQLNQVS------PADFTVLSDVLPMFSVDFSKQVSSSAACHSRQFVPLASGQAQVVL 279
Query: 288 SWWVLQLDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343
SWW +++D EG I + AP W T W DHW QCV+F+P + + +G A
Sbjct: 280 SWWDIEMDPEGKIKCTMAPFWAQTDPQELQWRDHWMQCVYFLPQEE-PVVQGSPRCLVAH 338
Query: 344 HTETSVSYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNA 400
H + V Y L+ P ++ + + D Q L R D + A+R
Sbjct: 339 HDDYCVWYSLQRTSPDENDSAYQVRPVCDCQAHLLWNRPRFGEINDQDRTDHYAQALRTV 398
Query: 401 L-QGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459
L G V C+ D L++ L V ++ + + ++ + N D+
Sbjct: 399 LLPGSV---CLCVSDGSLLSMLAHHLG-AEQVFTVESSVASY--RLMKRIFKVNHLE-DK 451
Query: 460 VEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519
+ ++ K + LT D + KKV LL+GEP++ +LPW NL FW R+ +D L+ +
Sbjct: 452 ISVINKRPELLTAADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTSVDQHLAPGAV 509
Query: 520 IMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTW 579
+MP L A + D+W R EGFD +++ + D ++ P + +
Sbjct: 510 VMPQAASLHAVIVEFRDLWRIRSPCGDCEGFDVHIMDDMIKHSLDFRESREAEPHPLWEY 569
Query: 580 QCGEIKKLSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSI- 636
C + K + T FDF +PI P Q K +E T PG HG LW+++ L +++I
Sbjct: 570 PCRSLSKPQEILT---FDFQQPIPQQPMQSKGTMELTRPGKSHGAVLWMEYQLTPDSTIS 626
Query: 637 --VISTGPDKR--YW----KQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELN 688
+I+ DK W KQ V ++ + + +G + S +VE F P G++
Sbjct: 627 TGLINPAEDKGDCCWNPHCKQAVYFLSTTLDLRVPLNGPRSV--SYVVE--FHPLTGDIT 682
Query: 689 VQ 690
++
Sbjct: 683 ME 684
|
|
| RGD|1304869 Prmt7 "protein arginine methyltransferase 7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 208/711 (29%), Positives = 330/711 (46%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KVFCGRANPTTGSLEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNIKYYQGIRAAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ K VLDIG GTGLLSMMA A +D A E + PM + K
Sbjct: 57 SRVKDKGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAVEVFKPMAEAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDLPCRANILVTELFDTELIGEGALPSYEHAHKH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKA-LDDIHLVPAGMDSILHVKSQQ 235
L+ E+ VP R T Y QLVES +W + L+ + L + ++P
Sbjct: 166 LVQEDCEAVPHRATVYAQLVESKRMWSWNKLFPVRVQTGLGEQLIIPPSELERCPGAPSV 225
Query: 236 YAMHCDAITK-EIKLLSEPFKIFEFDFWKRPDSHGEAEL-QIKSTDDGRVHAVVSWWVLQ 293
Y + + ++ + +LS+ +F DF K+ S Q G+ V+SWW ++
Sbjct: 226 YDIQLNQVSPADFTVLSDVLPMFSVDFSKQVSSSAACHSKQFVPLASGQAQVVLSWWDIE 285
Query: 294 LDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSV 349
+D EG I + AP W T W DHW QCV+F+P + I +G A H + V
Sbjct: 286 MDPEGKIKCTMAPFWAQTDPQELQWRDHWMQCVYFLPQEE-PIMQGSPRCLAAHHDDYCV 344
Query: 350 SYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNALQGRVQ 406
Y L+ P + + + D Q L R D + A+R L
Sbjct: 345 WYSLQRTSPDENNSAYQVRPVCDCQAHLLWNRPRFGEINDQDRTDHYARALRTMLMPG-- 402
Query: 407 PLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466
+C+ D L++ L V ++ + + ++ + N D++ ++ K
Sbjct: 403 SICLCVSDGSLLSVLAHHLG-AEQVFTVESSVASY--RLMKRIFKVNHLE-DKITVINKR 458
Query: 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526
+ LT D + KKV LL+GEP++ +LPW NL FW R+ +D L+ ++MP
Sbjct: 459 PELLTSADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTSVDQHLAPGAVVMPQAAS 516
Query: 527 LKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKK 586
L A + D+W R EGFD +++ + D ++ P + + C +
Sbjct: 517 LHAVIVEFRDLWRIRSPCGDCEGFDVHIMDDMIKHSLDFRESREAEPQPLWEYPC---RS 573
Query: 587 LSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSI---VISTG 641
LS ++ FDF +PI P Q + +E PG HG LW+++ L ++++ +++
Sbjct: 574 LSEPRQILTFDFQQPIPQQPMQSRGVMELRRPGKSHGAVLWMEYQLTPDSTVSTGLMNPA 633
Query: 642 PDKR--YWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQ 690
DK W K ++ + S D S F P G++ ++
Sbjct: 634 EDKGDCCWNPHCKQAVYFLSATLDPSAPLDGPQSVSYAVEFHPLTGDITME 684
|
|
| UNIPROTKB|Q99MI9 Prmt7 "Protein arginine N-methyltransferase 7" [Cricetulus longicaudatus (taxid:10030)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 204/659 (30%), Positives = 312/659 (47%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KVFCGRANPTTGSLEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNIKYYQGIRAAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ + VLDIG GTGLLSMMA A +D A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDID--SRADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDLPCRANILVTELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIHLVPAGMDSILHVKSQQ 235
L+ EN VP + T Y QLVES +W + L+ + +L + +VP
Sbjct: 166 LVQENCEAVPHKATVYAQLVESRRMWSWNKLFPVHVQTSLGEQVIVPPSELERCPGAPSV 225
Query: 236 YAMHCDAI-TKEIKLLSEPFKIFEFDFWKRPDSHGEAEL-QIKSTDDGRVHAVVSWWVLQ 293
Y + + + + + LS+ +F DF K+ S Q G+ V+SWW ++
Sbjct: 226 YDIQLNQVPSTDFTALSDVLPMFSVDFSKQVSSSAACHSKQFVPLASGQAQVVLSWWDIE 285
Query: 294 LDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSV 349
+D EG I + AP W T W DHW QCV+F+P + + +G A H + V
Sbjct: 286 MDPEGKITCTMAPFWAQTNPQELQWRDHWMQCVYFLPQEE-PVVQGSPRCLVAHHDDYCV 344
Query: 350 SYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNALQGRVQ 406
Y L+ +E + + D Q L R D + A+R L
Sbjct: 345 WYSLQRTSADENEEVYQVRPVCDCQAHLLWNRPRFGEINDQDRTDQYAQALRTVLMPGTI 404
Query: 407 PLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQY--LRTVADPNCFSIDRVEILQ 464
LCV D L++ L V ++ A Y ++ + N D+V I++
Sbjct: 405 CLCV--SDGSLLSLLAHHLG-AEQVFTV----ESSAASYRLMKRIFKANHLE-DKVSIIK 456
Query: 465 KGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFK 524
K + LT D + KKV LL+GEP++ + +LPW NL FW R+ +D L ++MP
Sbjct: 457 KRPELLTSADLEGKKVSLLLGEPFFATS--LLPWHNLYFWYARTSVDQHLEPGAVVMPQA 514
Query: 525 GILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEI 584
L A + D+W R EGFD +++ + D ++ P + + C
Sbjct: 515 ASLYAMIVEFRDLWRIRSPCGDCEGFDVHIMDDMIKHSLDFRESREAEPHPLWEYPC--- 571
Query: 585 KKLSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
+ LS ++ FDF +P+ P + +E PG HG LW+++ L ++++ STG
Sbjct: 572 RSLSEPQQILTFDFQQPVPQKPVHAEGSMELRRPGKSHGAVLWMEYHLTPDSTV--STG 628
|
|
| UNIPROTKB|F1MQX7 PRMT7 "Protein arginine N-methyltransferase 7" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 198/657 (30%), Positives = 309/657 (47%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KVFCGRANPTTGSVEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNMKYYQGIRAAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ + VLDIG GTGLLSMMA A +D A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDIDS--RADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+IL++E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDMPCRANILITELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKAL--DDIHLVPAGMDSILHVKSQ 234
L+ N VP R T Y QLVES +W + L+ + + + + P ++ S
Sbjct: 166 LVQANCEAVPHRATVYAQLVESRRMWSWNKLFPIRVQTSRGERVIIPPLELERCPGAPSV 225
Query: 235 QYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAEL-QIKSTDDGRVHAVVSWWVLQ 293
+ +LS+ +F DF K+ S Q + GR V+SWW ++
Sbjct: 226 CDIQLNQVSPADFTILSDVLPMFSVDFSKQVSSSAACHSRQFEPLVSGRAQVVLSWWDIE 285
Query: 294 LDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSV 349
+D EG I + AP W + W DHW QCV+F+P + + +G L A H + V
Sbjct: 286 MDPEGKIKCTMAPSWAHSDPEELQWRDHWMQCVYFLPQEE-PVVQGLALCLVAYHDDYCV 344
Query: 350 SYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNALQGRVQ 406
Y L+ P + R H + D Q L R D + A+R L +
Sbjct: 345 WYSLQKTSPEKNGRVHPVRPVCDCQAHLLWNRPRFGEINDRNRTDQYIQALRTVL--KPD 402
Query: 407 PLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466
+C+ D L++ L V ++ + ++ + N D++ I++K
Sbjct: 403 SVCLCVSDGSLLSMLAYHLG-VEQVFTIENSAVSH--RLMKKIFKANHLE-DKINIIEKR 458
Query: 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526
+ LT D + KKV LL+GEP++ +LPW NL FW R+ +D L ++MP
Sbjct: 459 PELLTPADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTAVDQHLGPGAVVMPQAAS 516
Query: 527 LKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKK 586
L + D+W R EGFD +++ + D K+ P + + C +
Sbjct: 517 LHVVVVEFRDLWRIRSPCGDCEGFDVHIMDDMIKRALDFRESKEAEPHPLWEYPC---RS 573
Query: 587 LSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
LS ++ FDF +P+ P + +E G HG LW+++ L +++++ STG
Sbjct: 574 LSEPQQILTFDFRQPVPLQPIHAEGTIELRRCGRSHGAVLWMEYHLTADSTV--STG 628
|
|
| UNIPROTKB|A6QQV6 PRMT7 "Protein arginine N-methyltransferase 7" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 197/657 (29%), Positives = 308/657 (46%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAI 60
++F + +P TG+ EW +EE+E + QE +A +SY DML+D RN Y R A+
Sbjct: 2 KVFCGRANPTTGSVEW--LEEDEHY-DYHQE--IARSSYADMLHDKDRNMKYYQGIRAAV 56
Query: 61 DKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118
++ + VLDIG GTGLLSMMA A +D A E + PM K
Sbjct: 57 SRVKDRGQKALVLDIGTGTGLLSMMAVTA--GAD---------FCYAIEVFKPMADAAVK 105
Query: 119 VLHVNGMGRNIKVINKRSDELEVGVDIDS--RADILVSEILDSELLGEGLIPTLQHAHDR 176
++ NG IKVINK S E+ VG D D RA+IL++E+ D+EL+GEG +P+ +HAH
Sbjct: 106 IVEKNGFSDKIKVINKHSTEVTVGPDGDMPCRANILITELFDTELIGEGALPSYEHAHRH 165
Query: 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKAL--DDIHLVPAGMDSILHVKSQ 234
L+ N VP R T Y QLVES +W + L+ + + + + P ++ S
Sbjct: 166 LVQANCEAVPHRATVYAQLVESRRMWSWNKLFPIRVQTSRGERVIIPPLELERCPGAPSV 225
Query: 235 QYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAEL-QIKSTDDGRVHAVVSWWVLQ 293
+ +LS+ +F DF K+ S Q + GR V+SWW ++
Sbjct: 226 CDIQLNQVSPADFTILSDVLPMFSVDFSKQVSSSAACHSRQFEPLVSGRAQVVLSWWDIE 285
Query: 294 LDREGTIFYSTAPRWISTG----NWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSV 349
+D EG I + AP W + W DHW QCV+F+P + + +G L A H + V
Sbjct: 286 MDPEGKIKCTMAPSWAHSDPEELQWRDHWMQCVYFLPQEE-PVVQGLALCLVAYHDDYCV 344
Query: 350 SYELKSQIPITDERQHNLNAK-DFQLAL--PPERIAIYGDGEWRLSMVMAMRNALQGRVQ 406
Y L+ P + R H + D Q L R D + A+R L +
Sbjct: 345 WYSLQKTSPEKNGRVHPVRPVCDCQAHLLWNRPRFGEINDRNRTDQYIQALRTVL--KPD 402
Query: 407 PLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466
+C+ D L++ L V ++ + ++ + N D++ I++K
Sbjct: 403 SVCLCVSDGSLLSMLAYHLG-VEQVFTIENSAVSH--RLMKKIFKANHLE-DKINIIEKR 458
Query: 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526
+ LT D + KKV LL+GEP++ +LPW NL FW R+ +D L ++MP
Sbjct: 459 PELLTPADLEGKKVSLLLGEPFF--TTSLLPWHNLYFWYVRTAVDQHLGPGAVVMPQAAS 516
Query: 527 LKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKK 586
L + D+W R EGFD +++ + D K+ P + + C + +
Sbjct: 517 LHVVVVEFRDLWRIRSPCGDCEGFDVHIMDDMIKRALDFRESKEAEPHPLWEYPCSSLSE 576
Query: 587 LSNVFTVMEFDFSKPI--SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
+ T FDF +P+ P + +E G HG LW+++ L +++++ STG
Sbjct: 577 PQQILT---FDFRQPVPLQPIHAEGTIELRRCGRSHGAVLWMEYHLTADSTV--STG 628
|
|
| UNIPROTKB|Q5ZIB9 PRMT7 "Protein arginine N-methyltransferase 7" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 203/654 (31%), Positives = 308/654 (47%)
Query: 10 KLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAIDKMVT 65
+ +P TG+ EWV EE+ED + QE +A + Y DML+D RN Y R A+ ++
Sbjct: 7 RANPTTGSLEWV--EEDEDY-DYHQE--IARSRYADMLHDKDRNMKYYQGIRAAVSRVKG 61
Query: 66 KS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123
+ VLDIG GTGLLSMMAA A +D A E + PM K++ N
Sbjct: 62 RGEKAIVLDIGTGTGLLSMMAASA--GAD---------FCYAVEVFKPMANAAVKIVEKN 110
Query: 124 GMGRNIKVINKRSDELEVGVDIDS--RADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181
G G IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +PT +HAH L+ E
Sbjct: 111 GFGDKIKVINKHSTEVTVGPDGDMQCRANILVTELFDTELIGEGALPTYEHAHKYLVQEG 170
Query: 182 PLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLV--PAGMDSILHVKSQQYAMH 239
VP R T Y QLVES +W + L+ +A D ++ P+ M++ V S
Sbjct: 171 CEAVPHRATVYVQLVESKRMWSWNKLFPVHVEAEDGEKIIVSPSEMENCPGVPSVCDIQL 230
Query: 240 CDAITKEIKLLSEPFKIFEFDFWKRPDSHGEA-ELQIKSTDDGRVHAVVSWWVLQLDREG 298
+ + +LS+ +F DF K S Q+ G+ V+SWW + +D G
Sbjct: 231 NQMPSSDFTILSDVVTMFSVDFSKPVRSASTCYRAQLDPVKSGKAQIVLSWWDIDMDPSG 290
Query: 299 TIFYSTAPRWI---STGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELKS 355
TI + AP W+ S W DHW QCV+F+P K + +GE++ A E SV Y L+
Sbjct: 291 TINCTMAPYWVKPMSAFQWRDHWMQCVYFLP-KEEQVLQGEKVHLTACRDEYSVWYTLQK 349
Query: 356 QIPITDERQHNLNAKD------FQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLC 409
DE + + + L R D + ++ + L R +C
Sbjct: 350 ARE-EDESKADARVESPVCRCQAHLLWNRPRFGELNDQNRTRQYIKSLMSVL--RTDSVC 406
Query: 410 VVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469
+ D L + +A V +L ++ N D+++I++ +
Sbjct: 407 LCISDGSLLPV-LAHYLGAEQVFTLENSA--VSCSVMKKFFKANHLE-DKIKIVEARPEL 462
Query: 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKA 529
LT ++KK+ +L+GEP++ +LPW NL FW R+ + L+ +V ++P L
Sbjct: 463 LTSSHLEEKKISVLVGEPFF--TTSLLPWHNLYFWYARTAVTEHLASDVTVLPQSAALHM 520
Query: 530 CAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSN 589
+ D+W R EGFD ++ + + K+ P + + C K LSN
Sbjct: 521 MIVEFQDLWRIRSPCGTCEGFDVQTMDDMIKNSLNFRESKEAEPHPLWEYPC---KSLSN 577
Query: 590 VFTVMEFDFSKPISP-CQG-KVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
V+ FDF K + C + V G HG LW+++ L ++ I +STG
Sbjct: 578 PQEVLLFDFRKTVPQHCLSTEGSVNLLRKGKSHGAVLWMEYHLTAD--ISVSTG 629
|
|
| UNIPROTKB|F1ND11 PRMT7 "Protein arginine N-methyltransferase 7" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 209/656 (31%), Positives = 310/656 (47%)
Query: 10 KLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAY----RLAIDKMVT 65
+ +P TG+ EWV EE+ED + QE +A + Y DML+D RN Y R A+ ++
Sbjct: 7 RANPTTGSLEWV--EEDEDY-DYHQE--IARSRYADMLHDKDRNMKYYQGIRAAVSRVKG 61
Query: 66 KS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123
+ VLDIG GTGLLSMMAA A +D A E + PM K++ N
Sbjct: 62 RGEKAIVLDIGTGTGLLSMMAASA--GAD---------FCYAVEVFKPMANAAVKIVEKN 110
Query: 124 GMGRNIKVINKRSDELEVGVDIDS--RADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181
G G IKVINK S E+ VG D D RA+ILV+E+ D+EL+GEG +PT +HAH L+ E
Sbjct: 111 GFGDKIKVINKHSTEVTVGPDGDMQCRANILVTELFDTELIGEGALPTYEHAHKYLVQEG 170
Query: 182 PLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLV--PAGMDSILHVKSQQYAMH 239
VP R T Y QLVES +W + L+ +A D ++ P+ M++ V S
Sbjct: 171 CEAVPHRATVYVQLVESKRMWSWNKLFPVHVEAEDGEKIIVSPSEMENCPGVPSVCDIQL 230
Query: 240 CDAITKEIKLLSEPFKIFEFDFWKRPDSHGEA-ELQIKSTDDGRVHAVVSWWVLQLDREG 298
+ + +LS+ +F DF K S Q+ G+ V+SWW + +D G
Sbjct: 231 NQMPSSDFTILSDVVTMFSVDFSKPVRSASTCYRAQLDPVKSGKAQIVLSWWDIDMDPSG 290
Query: 299 TIFYSTAPRWI---STGNWCDHWKQCVWFIPGKGMSICKGEELLFHALHTETSVSYELKS 355
TI + AP W+ S W DHW QCV+F+P K + +GE++ A E SV Y L+
Sbjct: 291 TINCTMAPYWVKPMSAFQWRDHWMQCVYFLP-KEEQVLQGEKVHLTACRDEYSVWYTLQK 349
Query: 356 QIPITDERQHNLNAKDFQLALPPERIAIYGDGEW---RLSMVMAMRNALQGRVQPLCVVA 412
R+ + N D ++ P R + W R + Q + V+
Sbjct: 350 A------REEDENKADARVESPVCRCQAHL--LWNRPRFGELNDQNRTRQYTKSLMSVLR 401
Query: 413 DDSVFLTICVARLSKT-AHVLSL--LPGLGDKGAQ--YLRTVADPNCFSIDRVEILQKGK 467
DSV L I L AH L + L + ++ N D+++I++
Sbjct: 402 TDSVCLCISDGSLLPVLAHYLGAEQVFTLENSAVSCSVMKKFFKANHLE-DKIKIVEARP 460
Query: 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGIL 527
+ LT + KK+ +L+GEP++ +LPW NL FW R+ + L+ V ++P L
Sbjct: 461 ELLTSSHLEDKKISVLVGEPFF--TTSLLPWHNLYFWYARTAVTEHLASGVTVLPQSAAL 518
Query: 528 KACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKL 587
+ D+W R EGFD ++ + + K+ P + + C K L
Sbjct: 519 HMMIVEFQDLWRIRSPCGTCEGFDVQTMDDMIKNSLNFRESKEAEPHPLWEYPC---KSL 575
Query: 588 SNVFTVMEFDFSKPISP-CQG-KVQVEFTEPGLCHGFALWIDWVLDSENSIVISTG 641
SN V+ FDF K + C + V G HG LW+++ L ++ I +STG
Sbjct: 576 SNPQEVLLFDFRKTVPQHCLSTEGSVNLLRKGKSHGAVLWMEYHLTAD--ISVSTG 629
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q944R7 | ANM16_ARATH | 2, ., 1, ., 1, ., - | 0.6273 | 0.9769 | 0.9364 | yes | no |
| A2Y8B9 | ANM7_ORYSI | 2, ., 1, ., 1, ., - | 0.5882 | 0.9625 | 0.9277 | N/A | no |
| A2AV36 | ANM7_DANRE | 2, ., 1, ., 1, ., 1, 2, 6 | 0.3050 | 0.9207 | 0.9355 | yes | no |
| Q5VS72 | ANM7_ORYSJ | 2, ., 1, ., 1, ., - | 0.5868 | 0.9625 | 0.9277 | yes | no |
| Q9NVM4 | ANM7_HUMAN | 2, ., 1, ., 1, ., 1, 2, 6 | 0.3061 | 0.8659 | 0.8684 | yes | no |
| Q5ZIB9 | ANM7_CHICK | 2, ., 1, ., 1, ., 1, 2, 6 | 0.3036 | 0.9308 | 0.9375 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 694 | |||
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 4e-10 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 4e-10
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 37 LLATTSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTS 96
LL + +LD+L D R + AI ++ + D+GAG+G+LS++AA A
Sbjct: 5 LLVDSYHLDLLRDVERLAVFTSAIAEVAEDT--FADLGAGSGILSVVAAHAAER------ 56
Query: 97 LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEI 156
V A E +L ++ LHV G N +V+ + + + AD+++ E+
Sbjct: 57 ------VIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-----ENADVVICEM 104
Query: 157 LDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTF 200
LD+ L+ E +P + + L +P +P V V
Sbjct: 105 LDTALIEEKQVPVINAVLE-FLRYDPTIIPQEVRIGANPVRRPP 147
|
Length = 252 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 19/109 (17%)
Query: 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN 128
VLDIG GTG L++ AR + VT + M++L ++ + G
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGAR----------VTGVDLSPEMLELARENAKLAL-GPR 52
Query: 129 IKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177
I + + +D+ D + G+ L+ L L
Sbjct: 53 ITFVQG---DAPDALDLLEGFDA----VFIGGGGGD-LLELLDALASLL 93
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 694 | |||
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 100.0 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.97 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.96 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.94 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.69 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.68 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.56 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.5 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.49 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.45 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.41 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.41 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.39 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.35 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.35 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.35 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.35 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.33 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.3 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.28 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.28 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.27 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.26 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.26 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.23 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.23 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.23 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.22 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.22 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.22 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.21 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.21 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.19 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.18 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.18 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.18 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.17 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.14 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.14 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.13 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.13 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.12 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.12 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.12 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.11 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.11 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.11 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.1 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.09 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.09 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.09 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.09 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.08 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.06 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.05 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.05 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.05 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.05 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.04 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.03 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.03 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.02 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.01 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.01 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.0 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.0 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.0 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.0 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.99 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.97 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.97 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.96 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.95 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.95 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.95 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.94 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.93 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.92 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.92 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.92 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.91 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.91 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.91 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.91 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.91 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.9 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.9 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.89 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.88 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.87 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.87 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.87 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.86 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.85 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.85 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.84 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.84 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.84 | |
| PLN02476 | 278 | O-methyltransferase | 98.84 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.84 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.83 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.83 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.83 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.81 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.8 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.79 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.79 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.79 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.79 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.79 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.78 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.78 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.78 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.78 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.78 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.78 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.78 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.78 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.77 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.76 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.76 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.76 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.75 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.74 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.73 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.72 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.7 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.7 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.7 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.68 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.68 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.68 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.67 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.67 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.67 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.67 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.66 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.66 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.66 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.64 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.64 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.63 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.63 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.63 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.62 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.62 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.61 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.61 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.61 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.59 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.59 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.58 | |
| PLN02366 | 308 | spermidine synthase | 98.57 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.56 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.56 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.55 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.54 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.53 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.53 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.53 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.53 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.52 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.52 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.51 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.51 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.5 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.49 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.47 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.43 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.42 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.42 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.41 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.39 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.35 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.35 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.34 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.32 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.31 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.3 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.3 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.3 | |
| PLN02823 | 336 | spermine synthase | 98.3 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.29 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.29 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.29 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.26 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.24 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.23 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.23 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.22 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.21 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.2 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.2 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.2 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.19 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.19 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.18 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.18 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.17 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.16 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.16 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.15 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.14 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.14 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.12 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.12 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.12 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.11 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.11 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.1 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.09 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.09 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.09 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.09 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.08 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.07 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.07 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.07 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.05 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.04 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.02 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.02 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.01 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.0 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.0 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.99 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.99 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.99 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.98 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.97 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.96 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.96 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.96 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.95 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.94 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.94 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.93 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.92 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.91 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.89 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.89 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.88 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.87 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.86 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.85 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.84 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.84 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.84 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.84 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.83 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.82 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.82 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.81 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.81 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.78 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.77 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.76 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.76 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.76 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 97.73 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.73 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.72 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 97.71 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.71 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.7 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.7 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.7 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 97.7 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.7 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.69 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.69 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.69 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.69 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.68 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.67 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.67 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.66 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.66 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 97.65 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 97.63 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.63 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.63 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.6 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.6 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.6 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.6 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.59 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.59 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.58 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.58 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.58 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.58 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.57 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 97.56 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.55 | |
| PLN02476 | 278 | O-methyltransferase | 97.55 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.53 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.52 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.51 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.51 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.5 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.5 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.49 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.48 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.47 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.47 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.46 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.46 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 97.46 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.45 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.44 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 97.43 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.4 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.4 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.4 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.39 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.39 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 97.36 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.35 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.34 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.33 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.32 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.3 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.29 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.28 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.27 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.26 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.26 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.25 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 97.23 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.23 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.22 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.21 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.21 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.19 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.19 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.18 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.18 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.17 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.16 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.16 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.16 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.13 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.13 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.13 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.12 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.11 | |
| PHA01634 | 156 | hypothetical protein | 97.09 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.09 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.08 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.08 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.08 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.07 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.07 | |
| PLN02366 | 308 | spermidine synthase | 97.04 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.03 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.01 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.99 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.97 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.94 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.94 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 96.92 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.92 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 96.89 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.86 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 96.86 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.82 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.81 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 96.81 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 96.8 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.8 | |
| PLN02823 | 336 | spermine synthase | 96.77 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.77 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.77 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.77 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 96.75 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.74 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.71 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.66 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.65 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.64 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.64 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.6 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.59 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.56 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.51 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.51 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.49 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 96.46 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.42 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.42 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 96.4 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.36 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.35 | |
| PHA01634 | 156 | hypothetical protein | 96.32 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.3 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 96.29 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.21 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.21 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 96.19 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 96.16 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.15 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.15 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 96.13 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.07 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.01 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.99 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.87 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 95.83 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 95.81 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.67 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 95.64 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.63 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.61 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.56 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 95.46 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.43 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 95.26 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.21 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.2 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.12 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.06 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.05 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.01 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 95.01 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.98 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 94.93 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 94.73 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 94.66 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 94.62 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 94.57 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 94.55 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.4 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 94.26 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 94.07 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.04 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.0 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 93.92 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.92 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.9 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 93.89 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 93.86 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 93.85 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.7 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 93.67 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.65 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.62 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 93.59 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.46 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 93.34 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.31 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.24 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 92.86 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 92.85 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 92.85 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.79 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 92.77 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 92.74 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 92.62 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 92.58 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 92.39 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.05 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 91.92 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 91.5 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.31 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 91.31 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 91.15 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 91.13 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 90.98 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 90.95 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 90.83 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 90.69 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 90.67 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 90.55 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 90.29 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 90.07 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.98 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 89.86 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 89.5 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 89.27 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 88.7 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 88.52 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 88.52 |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-80 Score=630.38 Aligned_cols=600 Identities=35% Similarity=0.520 Sum_probs=491.9
Q ss_pred ccccccccCCCCCccceeEeccCCCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccCC--------CEEEEEcC
Q 044245 4 QRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTKS--------CHVLDIGA 75 (694)
Q Consensus 4 ~~~~~~~~~~~~g~~~w~~~~~~~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~~--------~~VLDiG~ 75 (694)
++||++|.||.||+.||..++++|| +++.++++.|.+|++|..||.+|+.+|++.+.+. ..|||||+
T Consensus 1 ~~vF~~r~np~TG~~EWiv~ee~yd-----~~qelArSsy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigt 75 (636)
T KOG1501|consen 1 QRVFQLRQNPLTGNSEWIVIEENYD-----TDQELARSSYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGT 75 (636)
T ss_pred CchhhhhcCCCCCceeEEEeecccc-----hHHHHHHhhHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccC
Confidence 5899999999999999999999999 7999999999999999999999999999877642 46899999
Q ss_pred CCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEc
Q 044245 76 GTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSE 155 (694)
Q Consensus 76 GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse 155 (694)
|||+|||||+++|+ .+|||||.-.+|.++|+++...||++++|++|+++++++..+.. .+.|+++.|
T Consensus 76 GTGLLSmMAvraga-----------D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~--~RadI~v~e 142 (636)
T KOG1501|consen 76 GTGLLSMMAVRAGA-----------DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGS--SRADIAVRE 142 (636)
T ss_pred CccHHHHHHHHhcC-----------CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCc--chhhhhhHh
Confidence 99999999999997 68999999999999999999999999999999999999986431 579999999
Q ss_pred cccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccc
Q 044245 156 ILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQ 235 (694)
Q Consensus 156 ~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 235 (694)
.++..+++|+.++.+.+|.++++.+|.+.+|.++|+|+++|||..||.++++.+.+.+...|+.+.|.+.++..+++..+
T Consensus 143 ~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~ 222 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQ 222 (636)
T ss_pred hhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhccccccccccCCcccCCCccccCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999988877788899999988887776666555
Q ss_pred eeeeeccccccceecCCCeEEEEEEcCCCCCCC--ceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCC---
Q 044245 236 YAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSH--GEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWIS--- 310 (694)
Q Consensus 236 ~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~~--~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~--- 310 (694)
....++..+.+++.||++-.+|.+||....... ..........++|++....+||++.||..+.+.+..+|.|.+
T Consensus 223 d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~ 302 (636)
T KOG1501|consen 223 DSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTI 302 (636)
T ss_pred HHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccchhheeeeeeeeeccCcceEEEecceecCCCh
Confidence 555566777889999999999999998533222 122334566789999999999999999999999999998852
Q ss_pred -CCCccCccceeeeecCC-Ccee-ecCCCEEEEEEEecceEEEEEEeeecCCCcc---ccccccCcCcccccChh--HHh
Q 044245 311 -TGNWCDHWKQCVWFIPG-KGMS-ICKGEELLFHALHTETSVSYELKSQIPITDE---RQHNLNAKDFQLALPPE--RIA 382 (694)
Q Consensus 311 -~~~w~~hW~Q~v~~l~~-~pi~-V~~Gd~l~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~~r~--~i~ 382 (694)
+..|+.||.|+++++++ +..+ ++....+.+-..|+..++|+...-..+-.+. ...+.|.|+.|+.+-+. ++.
T Consensus 303 ~~~~~~~~weq~c~y~~~~~~~~i~~~ss~~~v~~~H~~l~i~~~~h~~~~~~n~r~~~~~~~~~~~~h~a~~~~~s~~g 382 (636)
T KOG1501|consen 303 GNSVFGLLWEQACPYPKEKKGNRIHNVSSLMTVFSYHLWLYIYRTDHYHCHLGNKRFMLPDTLKPLLIHMAFQKIVSNIG 382 (636)
T ss_pred HHHHHHHHHHHhcCCChhhhcCceeeccceEEEeeeeeeeEEeeeeeeccccccccccCcccccchhhhhhhhccchhHh
Confidence 34588999999998863 1233 4444677777889999999887644332222 23466889999988877 788
Q ss_pred hcCChhHHHHHHHHHHHHhcCCCCCcEEEecCCchHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEE
Q 044245 383 IYGDGEWRLSMVMAMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEI 462 (694)
Q Consensus 383 ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~GgiLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~v 462 (694)
.++++.|+..|..++.+... .+.++|-+. .+++.
T Consensus 383 e~~~q~~~~r~~~~l~e~~r---------------------------------------------~if~~~~~~-~Klsn 416 (636)
T KOG1501|consen 383 EMGRQIWPKRIQARLSERER---------------------------------------------VIFNQRLIQ-LKLSN 416 (636)
T ss_pred hhhhhhhhHHHHHHHHHHHH---------------------------------------------HHHHHHHHH-Hhhcc
Confidence 99999998888877663221 111111111 23333
Q ss_pred eecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhhhhhcC
Q 044245 463 LQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRR 542 (694)
Q Consensus 463 i~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l~~~~~ 542 (694)
++...+-++.+ ...|++++||||.. +|+||.+|+|||.+.+++..+.|+.++.|+.+.|.|.|+++++||+++.
T Consensus 417 ~e~vp~i~t~~----ds~~ivl~epf~~t--am~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S 490 (636)
T KOG1501|consen 417 NESVPAIMTSP----DSPDIVLAEPFVKT--AMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIAS 490 (636)
T ss_pred cccchhhhcCC----CCCceeecchhhhh--ccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcc
Confidence 33322223332 24589999999996 8999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCCCCcceeEEEEecCCeeeeEE
Q 044245 543 SLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISPCQGKVQVEFTEPGLCHGF 622 (694)
Q Consensus 543 ~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~~g~ 622 (694)
++++|.|||++-|+++.....++.+-. .+..|+|+|+| ..+++|.+|++|||..+.... +..+.+.+.|.-||+
T Consensus 491 ~~G~~~GFDl~~~Dei~~kA~~~~da~-~~E~~LWEY~~---~~~~d~~eIL~F~~~~~V~~Q--k~~V~i~~~~sS~A~ 564 (636)
T KOG1501|consen 491 DVGTVNGFDLSFFDEISTKARTATDAI-VDEQSLWEYAG---IVKGDAVEILRFPIDGRVSSQ--KCVVNIDNMSSSNAI 564 (636)
T ss_pred cccccccceeeehhHHHHhhchhhhhh-hccchhhhccC---eecCCceeEEEeccCCccccc--eeEEEccCCCccccc
Confidence 999999999999999865443322211 23358999987 689999999999999976432 456889999999999
Q ss_pred EEEEEEEecCCCcEEEecCCC----------CCceeeeEEecCcceeccccCCCCCCcceeEEEEEEEeCCCeeEEEEee
Q 044245 623 ALWIDWVLDSENSIVISTGPD----------KRYWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASFDPSNGELNVQHT 692 (694)
Q Consensus 623 ~~Wfd~~~~~~~~~~lst~P~----------~~hW~Q~v~~l~~p~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (694)
+.||+|.|.+ +.||||.. .+|.||+|||+ +..-.|+ +++++.+.||+++|+|+|+..
T Consensus 565 ~mWME~~~~~---~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~---~t~L~~~-------ksl~~~~~F~~~TGDI~~qF~ 631 (636)
T KOG1501|consen 565 PMWMEWEFGG---INLSTGLLSISSAGVPEWNKGYKQGVYFP---ITALRND-------KSLCLHALFDKSTGDINFQFG 631 (636)
T ss_pred eeeEEeeeCc---eeecccceeecCCCCcccCccccceeEEE---hHHhCCC-------ceEEEEEEEcCCCCceEEEec
Confidence 9999999985 45888875 24669999987 4444555 389999999999999998753
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=475.62 Aligned_cols=274 Identities=18% Similarity=0.216 Sum_probs=239.6
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccE
Q 044245 382 AIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRV 460 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i 460 (694)
+||+|.+|+++||.||.+|...|+||+||||||| ||||||||||| |++|||||+ +.+| +.++++++.||++ ++|
T Consensus 37 eML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~--S~ia-~~a~~iv~~N~~~-~ii 111 (346)
T KOG1499|consen 37 EMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEA--SSIA-DFARKIVKDNGLE-DVI 111 (346)
T ss_pred HHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEec--hHHH-HHHHHHHHhcCcc-ceE
Confidence 7999999999999999999999999999999999 99999999997 999999999 8887 6889999999998 999
Q ss_pred EEeecccccccccccCCccccEEEccc--cccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhhh
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIW 538 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~--~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l~ 538 (694)
+||+|++|++++ |.+||||||||| ||+++|+||+ ++| ||||+ ||+|||.|+|++|++++++++++.+.
T Consensus 112 ~vi~gkvEdi~L---P~eKVDiIvSEWMGy~Ll~EsMld-sVl---~ARdk---wL~~~G~i~P~~a~l~l~~i~d~~~~ 181 (346)
T KOG1499|consen 112 TVIKGKVEDIEL---PVEKVDIIVSEWMGYFLLYESMLD-SVL---YARDK---WLKEGGLIYPDRATLYLAAIEDDSYK 181 (346)
T ss_pred EEeecceEEEec---CccceeEEeehhhhHHHHHhhhhh-hhh---hhhhh---ccCCCceEccccceEEEEeccCchhh
Confidence 999999999965 469999999996 7899999999 999 99998 79999999999999999999999998
Q ss_pred hhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC---CCcceeEEEEec
Q 044245 539 NSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI---SPCQGKVQVEFT 614 (694)
Q Consensus 539 ~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~---~~~~~~~~~~~~ 614 (694)
..+.. |.+|||||||++....... +....++ +.+++++|+.+.++|+++.. ..+++.++++++
T Consensus 182 ~~~i~fW~~Vygfdms~~~~~~~~e---~lv~vv~----------~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~ 248 (346)
T KOG1499|consen 182 DDKIGFWDDVYGFDMSCIKKIAIKE---PLVDVVD----------PEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVT 248 (346)
T ss_pred hhhcCccccccccchhhhhhhhhcc---cceeccC----------hhHhcccceeeEEeeeeeeeccceeeccceEEEEc
Confidence 87654 8999999999999864211 1100011 24799999999999999974 247888999999
Q ss_pred CCeeeeEEEEEEEEEecCCC---cEEEecCCC--CCceeeeEEecCcceeccccCCCCCC----------cceeEEEEEE
Q 044245 615 EPGLCHGFALWIDWVLDSEN---SIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRTD----------LCSSTLVEAS 679 (694)
Q Consensus 615 ~~g~~~g~~~Wfd~~~~~~~---~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~~----------~~~~~~~~~~ 679 (694)
++|.+|||++|||+.|+... ++.+||||. .|||||+|++|++|+.|+.|+.+.|. .+..+.++..
T Consensus 249 r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~ 328 (346)
T KOG1499|consen 249 RNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLN 328 (346)
T ss_pred cCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEe
Confidence 99999999999999998644 589999998 57999999999999999999998883 4444555555
Q ss_pred EeCC
Q 044245 680 FDPS 683 (694)
Q Consensus 680 ~~~~ 683 (694)
|.+.
T Consensus 329 ~~~~ 332 (346)
T KOG1499|consen 329 FKGQ 332 (346)
T ss_pred cCCc
Confidence 5555
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=387.53 Aligned_cols=279 Identities=18% Similarity=0.238 Sum_probs=230.5
Q ss_pred hhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 378 PERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 378 r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
-..-.|+.|.+||.+|++||..|...|.|++|||+|+| ||||||||+|| |+||||||+ ++|| ++|+++++.|++.
T Consensus 150 ~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA--S~MA-qyA~~Lv~~N~~~ 225 (517)
T KOG1500|consen 150 SQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA--SEMA-QYARKLVASNNLA 225 (517)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh--hHHH-HHHHHHHhcCCcc
Confidence 34568999999999999999999999999999999999 99999999997 999999999 8887 5899999999998
Q ss_pred cccEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccC
Q 044245 457 IDRVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFC 534 (694)
Q Consensus 457 ~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~ 534 (694)
|||+||.|++|+|++ |||||||||||+ .+..|.||. +-+ .+| +||||.|.|+|..++++++|+++
T Consensus 226 -~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLE-sYl---~Ar----k~l~P~GkMfPT~gdiHlAPFsD 292 (517)
T KOG1500|consen 226 -DRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLE-SYL---HAR----KWLKPNGKMFPTVGDIHLAPFSD 292 (517)
T ss_pred -ceEEEccCccccccC----chhccEEEeccchhhhhhHHHHH-HHH---HHH----hhcCCCCcccCcccceeecccch
Confidence 999999999999986 699999999984 344467777 322 344 48999999999999999999999
Q ss_pred hhhhhhcCC----C--Ccccccccccchhh-hhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC----C
Q 044245 535 PDIWNSRRS----L--SKIEGFDHAVVNTS-LGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI----S 603 (694)
Q Consensus 535 ~~l~~~~~~----~--~~v~G~d~s~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~----~ 603 (694)
+.|+-+... | +++||.|++++... .+..+..|.....+ -++|-.+...+.+||.... .
T Consensus 293 E~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD-----------~RilmA~sv~h~~dF~~~kEedlh 361 (517)
T KOG1500|consen 293 EQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFD-----------IRILMAKSVFHVIDFLNMKEEDLH 361 (517)
T ss_pred HHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccc-----------cceeeccchHhhhhhhhcccchhe
Confidence 998776532 4 59999999987663 45555555533222 1466677777889998865 2
Q ss_pred CcceeEEEEecCCeeeeEEEEEEEEEecCCC-cEEEecCCCC--CceeeeEEecCcceeccccCCCCCCcceeEEEEEEE
Q 044245 604 PCQGKVQVEFTEPGLCHGFALWIDWVLDSEN-SIVISTGPDK--RYWKQGVKLMAKPVAVGFEESGRTDLCSSTLVEASF 680 (694)
Q Consensus 604 ~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~-~~~lst~P~~--~hW~Q~v~~l~~p~~v~~g~~~~~~~~~~~~~~~~~ 680 (694)
.+...+++++...|.|||+++|||+.|+++. +++++|+|.. |||.|..++|..|+-|+.|+.+.| ++.+.+.
T Consensus 362 ~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltG----r~~LiA~- 436 (517)
T KOG1500|consen 362 EIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTG----RLLLIAN- 436 (517)
T ss_pred eecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeee----eEEEEEc-
Confidence 3566778889999999999999999999877 5899999984 699999999999999999999999 5555443
Q ss_pred eCCCeeEEE
Q 044245 681 DPSNGELNV 689 (694)
Q Consensus 681 ~~~~~~~~~ 689 (694)
.-++.+|++
T Consensus 437 ~~QSY~i~i 445 (517)
T KOG1500|consen 437 SRQSYDITI 445 (517)
T ss_pred cccceeEEE
Confidence 334444433
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=358.40 Aligned_cols=278 Identities=28% Similarity=0.385 Sum_probs=232.4
Q ss_pred cccccccchHHHhhCCHHHHHHHHHHHHh--hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH
Q 044245 34 QEPLLATTSYLDMLNDSYRNRAYRLAIDK--MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP 111 (694)
Q Consensus 34 ~~~~l~~~~~~~ml~D~~r~~~y~~ai~~--~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~ 111 (694)
+..+.-...|..||+|..|+.+|+.+|.+ .+.++++|||+|||||+||+++|++|+ .+|+|+|.| .
T Consensus 26 f~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA-----------~~V~aVe~S-~ 93 (346)
T KOG1499|consen 26 FDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGA-----------RKVYAVEAS-S 93 (346)
T ss_pred hhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCc-----------ceEEEEech-H
Confidence 34444556688999999999999999975 578899999999999999999999997 799999985 6
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 112 MVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 112 ~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+++.|++.++.|++++.|+++++.++++.+| .+++|+|||||||++++.|.++..++.|++++|+|||.++|+++++
T Consensus 94 ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l 170 (346)
T KOG1499|consen 94 IADFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATL 170 (346)
T ss_pred HHHHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceE
Confidence 7799999999999999999999999998754 2899999999999999999999999999999999999999999999
Q ss_pred EEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCC--CCc
Q 044245 192 YGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPD--SHG 269 (694)
Q Consensus 192 ~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~--~~~ 269 (694)
|+++++......- .+ + ....++||++++. .+.. .+.++ ++ ...+..++++|+.+.++|+.+... ...
T Consensus 171 ~l~~i~d~~~~~~-~i-~-fW~~Vygfdms~~--~~~~----~~e~l-v~-vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F 239 (346)
T KOG1499|consen 171 YLAAIEDDSYKDD-KI-G-FWDDVYGFDMSCI--KKIA----IKEPL-VD-VVDPEQLLTEPCLIKEFDLYTVKIEDLSF 239 (346)
T ss_pred EEEeccCchhhhh-hc-C-ccccccccchhhh--hhhh----hcccc-ee-ccChhHhcccceeeEEeeeeeeeccceee
Confidence 9999998865431 01 1 1345778998874 1110 01111 12 344678999999999999987543 346
Q ss_pred eeeEEEEEccCCceeEEEEEEEEeecCC---CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 270 EAELQIKSTDDGRVHAVVSWWVLQLDRE---GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 270 ~~~~~~~~~~~G~~~g~~~Wf~~~l~~~---~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
+.++++.++++|.+|||++|||+.|... ..+.+||+|.. +. +||+|+||+++ +|+.|++|+.|.+++.
T Consensus 240 ~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~--p~---THWKQtVfyl~-~p~~v~~ge~i~g~it 310 (346)
T KOG1499|consen 240 TSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSS--PY---THWKQTVFYLE-NPLTVKEGEDITGTIT 310 (346)
T ss_pred ccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCCC--CC---ceeeeEEEEec-CccceecCceEEEEEE
Confidence 6789999999999999999999999753 36899999973 33 49999999995 7999999999999975
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=379.70 Aligned_cols=293 Identities=27% Similarity=0.374 Sum_probs=221.3
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhcc----------CCCEEEEEcCCCCHHHHHHHHHcCCCCCCcc
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVT----------KSCHVLDIGAGTGLLSMMAARAMGSSDSTTS 96 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~----------~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~ 96 (694)
...|+||+.+.|.+.+|..+.+|..|++.|.+||.+++. ++.+|||||||+|.|+++++++++...
T Consensus 137 Lq~PLqPl~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---- 212 (448)
T PF05185_consen 137 LQAPLQPLMDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---- 212 (448)
T ss_dssp EE----TTTS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC----
T ss_pred ccCCCCCchhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC----
Confidence 457999999999999999999999999999999988653 147899999999999999999873110
Q ss_pred CCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHh
Q 044245 97 LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDR 176 (694)
Q Consensus 97 ~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~ 176 (694)
.+.+|||||.|+.+...+++.++.|+++++|+++++|++++.. ++++|+||||+||+++.+| +.+..+++++|
T Consensus 213 --~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~pE~Lda~~r 285 (448)
T PF05185_consen 213 --GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSPECLDAADR 285 (448)
T ss_dssp --CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHHHHHHHGGG
T ss_pred --CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCHHHHHHHHh
Confidence 1479999999999998888888999999999999999999864 5799999999999999888 55566889999
Q ss_pred ccCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCC-eE
Q 044245 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEP-FK 255 (694)
Q Consensus 177 ~L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p-~~ 255 (694)
+|+|||++||+++++|++|++++.+|....... ...+ ++. ++.+. ..+...|+++ ..
T Consensus 286 fLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~----~~~~-------~e~---------pyvv~--~~~~~~Ls~~~~~ 343 (448)
T PF05185_consen 286 FLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWW----NPSS-------FET---------PYVVH--LSPFELLSDPPQP 343 (448)
T ss_dssp GEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHH----GHHH-------HTS---------SEEE----GGGGBCSCCEEE
T ss_pred hcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhc----chhh-------cCC---------cEEEE--ccchhhhcCCceE
Confidence 999999999999999999999999987421110 0000 111 11111 1246788888 89
Q ss_pred EEEEEcCCCC-----CCCceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCCCCCccCccceeeeecCCCce
Q 044245 256 IFEFDFWKRP-----DSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGM 330 (694)
Q Consensus 256 ~~~fdf~~~~-----~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi 330 (694)
+++|++.+.. ...+...++|++.++|++|||++||+++|+++ |.|||+|.. ...+.++||+|++|+|+ +|+
T Consensus 344 ~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~--V~LSt~P~~-~~s~~~tsW~q~~fpL~-~Pl 419 (448)
T PF05185_consen 344 VFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGD--VVLSTSPSS-AHSPPMTSWFQIFFPLE-EPL 419 (448)
T ss_dssp EEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECS--EEEESSTTS----TT--TTEEEEEEEE-EEE
T ss_pred EEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCC--eeeecCCCc-CCCCCCCeEeEEEEEec-CcE
Confidence 9999998654 33566789999999999999999999999986 999999974 12234679999999995 799
Q ss_pred eecCCCEEEEEEE--ecceEEEEEEeee
Q 044245 331 SICKGEELLFHAL--HTETSVSYELKSQ 356 (694)
Q Consensus 331 ~V~~Gd~l~~~~~--~d~~~~~~~~~~~ 356 (694)
.|++||+|.+++. +|+.+|||+|..+
T Consensus 420 ~V~~g~~I~~~i~R~~~~~~vWYEW~v~ 447 (448)
T PF05185_consen 420 YVKAGDEISVHIWRKTDDRKVWYEWSVE 447 (448)
T ss_dssp EE-TT-EEEEEEEEECCSTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEEcCCCcEEEEEEEe
Confidence 9999999999874 6899999999754
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=338.87 Aligned_cols=262 Identities=19% Similarity=0.298 Sum_probs=193.3
Q ss_pred ccChhHHh-hcCChhHHHHHHHHHHHHhcCC--------CCCcEEEecCC-chHHHHHHHcC----CCceEEEcCCCcCh
Q 044245 375 ALPPERIA-IYGDGEWRLSMVMAMRNALQGR--------VQPLCVVADDS-VFLTICVARLS----KTAHVLSLLPGLGD 440 (694)
Q Consensus 375 ~~~r~~i~-ml~D~~r~~~y~~Ai~~~~~~~--------~~~~vldig~G-giLsl~aA~~g----~a~~V~ave~~~~~ 440 (694)
.+.-...+ +-+|.+|.+.|++||.+++..+ ++++|+|||+| |+|+++|++|| +|++|||||. ++
T Consensus 147 nL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk--n~ 224 (448)
T PF05185_consen 147 NLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK--NP 224 (448)
T ss_dssp ---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES--ST
T ss_pred hhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC--CH
Confidence 34444455 4599999999999999886543 35789999999 99999999985 4799999999 78
Q ss_pred hHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCc
Q 044245 441 KGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518 (694)
Q Consensus 441 ~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g 518 (694)
.|..++++.++.||++ ++|+||++++++++. ++||||||||++ |..+| ++| +.| .+|++ ||||||
T Consensus 225 ~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~p-E~L---da~~r---fLkp~G 291 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWG-DKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSP-ECL---DAADR---FLKPDG 291 (448)
T ss_dssp HHHHHHHHHHHHTTTT-TTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHH-HHH---HHGGG---GEEEEE
T ss_pred hHHHHHHHHHHhcCCC-CeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCH-HHH---HHHHh---hcCCCC
Confidence 8877777888999998 999999999998886 589999999974 44444 666 555 66655 899999
Q ss_pred eEEcceEEEEEEEccChhhhhhcCCCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCc-eeEEEEe
Q 044245 519 IIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNV-FTVMEFD 597 (694)
Q Consensus 519 ~i~P~~a~l~~~~v~~~~l~~~~~~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~-~~l~~~d 597 (694)
++||+++++|++||+++.+|.+...+.+..+|+...+-. . .+...|+++ ..+++|+
T Consensus 292 i~IP~~~t~ylaPiss~~l~~~~~~~~~~~~~e~pyvv~----------------------~-~~~~~Ls~~~~~~~~F~ 348 (448)
T PF05185_consen 292 IMIPSSYTSYLAPISSPKLYQEVRNWWNPSSFETPYVVH----------------------L-SPFELLSDPPQPVFTFD 348 (448)
T ss_dssp EEESSEEEEEEEEEE-HHHHHHHHHHHGHHHHTSSEEE-------------------------GGGGBCSCCEEEEEETT
T ss_pred EEeCcchhhEEEEeeCHHHHHHHHhhcchhhcCCcEEEE----------------------c-cchhhhcCCceEEEEec
Confidence 999999999999999999998744322222222211110 0 123568888 8899998
Q ss_pred CCCCC------CCcceeEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCCC------CceeeeEEecCcceeccccCC
Q 044245 598 FSKPI------SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDK------RYWKQGVKLMAKPVAVGFEES 665 (694)
Q Consensus 598 ~~~~~------~~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~~------~hW~Q~v~~l~~p~~v~~g~~ 665 (694)
+.+.. ......++++++++|++|||+.|||+.|.++ +.|||+|.. +||+|++|+|++|+.|++|+
T Consensus 349 hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~--V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~- 425 (448)
T PF05185_consen 349 HPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGD--VVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGD- 425 (448)
T ss_dssp TCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECS--EEEESSTTS---TT--TTEEEEEEEEEEEEE-TT--
T ss_pred cCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCC--eeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCC-
Confidence 88753 2345678899999999999999999999866 789999975 69999999999999999999
Q ss_pred CCCCcceeEEEEEEEeCCC
Q 044245 666 GRTDLCSSTLVEASFDPSN 684 (694)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~ 684 (694)
.|.+++.-..+.
T Consensus 426 -------~I~~~i~R~~~~ 437 (448)
T PF05185_consen 426 -------EISVHIWRKTDD 437 (448)
T ss_dssp -------EEEEEEEEECCS
T ss_pred -------EEEEEEEEEcCC
Confidence 455555544443
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=294.22 Aligned_cols=267 Identities=23% Similarity=0.367 Sum_probs=221.0
Q ss_pred HHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 44 LDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 44 ~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
.+|+.|..|+..|.+||... -+.+++|||+|||+|+|++++|++|+ .+|||+|. .+|+++|++.++
T Consensus 153 QNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA-----------~~vYAvEA-S~MAqyA~~Lv~ 220 (517)
T KOG1500|consen 153 QNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA-----------KKVYAVEA-SEMAQYARKLVA 220 (517)
T ss_pred HHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCc-----------ceEEEEeh-hHHHHHHHHHHh
Confidence 47999999999999999753 45689999999999999999999998 79999998 589999999999
Q ss_pred HcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchhh
Q 044245 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFL 201 (694)
Q Consensus 122 ~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~l 201 (694)
.|++.+||++|.|++++++ +|+++|+||||+||+.+.+|.+++..++++ ++|+|.|.++|..+.++.+|...+.|
T Consensus 221 ~N~~~~rItVI~GKiEdie----LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~L 295 (517)
T KOG1500|consen 221 SNNLADRITVIPGKIEDIE----LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQL 295 (517)
T ss_pred cCCccceEEEccCcccccc----CchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHH
Confidence 9999999999999999985 578999999999999999999999999997 69999999999999999999999877
Q ss_pred hhhc----ccCcccccccCCeeeccC---CccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCCCC---cee
Q 044245 202 WKLH----DLYNNEAKALDDIHLVPA---GMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSH---GEA 271 (694)
Q Consensus 202 ~~~~----~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~~---~~~ 271 (694)
+-.+ ..+. -.+.+|+|++++ +.+++++ .| .+|.+ +.+.|-.+.....+||....+.+ ...
T Consensus 296 y~E~~nkAnFWy--Qq~fyGVdLt~L~g~a~~eYFr-----QP-vVDtF--D~RilmA~sv~h~~dF~~~kEedlh~i~i 365 (517)
T KOG1500|consen 296 YVEQFNKANFWY--QQNFYGVDLTPLYGSAHQEYFR-----QP-VVDTF--DIRILMAKSVFHVIDFLNMKEEDLHEIDI 365 (517)
T ss_pred HHHHHhhhhhhh--hhccccccchhhhhhhhhhhhc-----cc-ccccc--ccceeeccchHhhhhhhhcccchheeecc
Confidence 5421 1111 134678998875 2223321 11 13333 35777778788899998766553 346
Q ss_pred eEEEEEccCCceeEEEEEEEEeecCC-CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 272 ELQIKSTDDGRVHAVVSWWVLQLDRE-GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 272 ~~~~~~~~~G~~~g~~~Wf~~~l~~~-~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
.++|.+...|.+||+++|||+-|++. -.+.++|+|.. +. +||.|....|+ .|+.|++|++|++++.
T Consensus 366 PlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~a--pl---tHwyqvrCll~-~Pi~v~aGq~ltGr~~ 432 (517)
T KOG1500|consen 366 PLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTA--PL---THWYQVRCLLS-QPIFVKAGQTLTGRLL 432 (517)
T ss_pred cceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCC--Cc---ccceeeeeecc-CchhhhcCCeeeeeEE
Confidence 68899999999999999999999874 24688999973 33 49999999886 8999999999999874
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=271.93 Aligned_cols=292 Identities=20% Similarity=0.259 Sum_probs=235.4
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccC---------CCEEEEEcCCCCHHHHHHHHHcCCCCCCccC
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTK---------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSL 97 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~---------~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~ 97 (694)
...|+||..+.+.+.+|..+..|.+++..|.+||.+++.. ..+++-+|+|.|.|.-...|+.....
T Consensus 319 Lq~PLQPLsdNLe~~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~----- 393 (649)
T KOG0822|consen 319 LQAPLQPLSDNLENQTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD----- 393 (649)
T ss_pred hhCCCchhhhhhhhhhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc-----
Confidence 5679999999999999999999999999999999987542 24688999999988666655543111
Q ss_pred CCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhc
Q 044245 98 NTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRL 177 (694)
Q Consensus 98 ~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~ 177 (694)
.+.++||+|.||+++...+. .+...+.++|++|.+|++.+..+ .++.|++|||++|++..+|-..+ .++-..++
T Consensus 394 -RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~VSELLGSFGDNELSPE-CLDG~q~f 467 (649)
T KOG0822|consen 394 -RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---REQADIIVSELLGSFGDNELSPE-CLDGAQKF 467 (649)
T ss_pred -CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc---hhhccchHHHhhccccCccCCHH-HHHHHHhh
Confidence 25789999999999988875 66678889999999999998743 27899999999999998875544 55666789
Q ss_pred cCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEE
Q 044245 178 LVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIF 257 (694)
Q Consensus 178 L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~ 257 (694)
|+|+|+.||...|.|++|+.++.||+.-.-.. .. ..|+..+ .+ ...++..|++|+.+|
T Consensus 468 LkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~----~~-------~~fe~~Y---------VV--~l~~~~~La~~q~vf 525 (649)
T KOG0822|consen 468 LKPDGISIPSSYTSYIAPIMSPKLYQEVKATN----DP-------NAFEAPY---------VV--LLHNYCILAEPQPVF 525 (649)
T ss_pred cCCCceEccchhhhhhcccccHHHHHHHHhcC----Cc-------cccccce---------EE--EecceeecCCCCcee
Confidence 99999999999999999999999997421111 00 1122221 11 123578999999999
Q ss_pred EEEcCCC---CCCCceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCCCCCccCccceeeeecCCCceeecC
Q 044245 258 EFDFWKR---PDSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICK 334 (694)
Q Consensus 258 ~fdf~~~---~~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~ 334 (694)
+|..... -++.+...++|++.++|.+|||++|||.+|+.+ |.||+.|... ++ -+.+|.+.+|+++ +|+.|..
T Consensus 526 tF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~LYkd--I~LSI~P~T~-TP-~MfSWFPi~fPlk-~Pi~v~e 600 (649)
T KOG0822|consen 526 TFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAVLYKD--IFLSIEPNTH-TP-GMFSWFPIFFPLK-QPITVRE 600 (649)
T ss_pred EEecCCcccccccccceeEEEecCCCceEeecchhhhhhhhhe--eeEeeccCCC-CC-Cceeeeeeeeecc-CceEeCC
Confidence 9988654 234567889999999999999999999999997 9999999753 22 2569999999994 8999999
Q ss_pred CCEEEEEE--EecceEEEEEEeee
Q 044245 335 GEELLFHA--LHTETSVSYELKSQ 356 (694)
Q Consensus 335 Gd~l~~~~--~~d~~~~~~~~~~~ 356 (694)
|++|+++. ++|+..|||+|..+
T Consensus 601 ~~~lsv~~wR~~d~~kVWYEW~v~ 624 (649)
T KOG0822|consen 601 GSTLSVHFWRCVDSTKVWYEWSVE 624 (649)
T ss_pred CCeEEEEEEEEeCCceeEEEEEee
Confidence 99999997 58999999999877
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-30 Score=264.92 Aligned_cols=265 Identities=16% Similarity=0.209 Sum_probs=202.6
Q ss_pred cCcccccChhHH-hhcCChhHHHHHHHHHHHHhcCCCC------CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChh
Q 044245 370 KDFQLALPPERI-AIYGDGEWRLSMVMAMRNALQGRVQ------PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDK 441 (694)
Q Consensus 370 ~~~h~~~~r~~i-~ml~D~~r~~~y~~Ai~~~~~~~~~------~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~ 441 (694)
++.|..+.|++. .||||..||.+|+.+|++.+...+. ..|||+|+| |+|||||+++| |.+|+|+|.. .+|
T Consensus 24 yd~~qelArSsy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~Evf-kPM 101 (636)
T KOG1501|consen 24 YDTDQELARSSYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVF-KPM 101 (636)
T ss_pred cchHHHHHHhhHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhc-CCeEEeehhh-chH
Confidence 567888888887 5999999999999999999876543 368999999 99999999997 9999999994 777
Q ss_pred HHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccccccCC--ccccCcchhhHHHHHhhcccccCCCce
Q 044245 442 GAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGN--DGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 442 ~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~--e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
+ .+|++|+..||++ |+|+||.+++++++... ..++||+|.|-|.... ||.|| ...+|++++++||+.
T Consensus 102 ~-d~arkI~~kng~S-dkI~vInkrStev~vg~--~~RadI~v~e~fdtEligeGalp-------s~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 102 V-DLARKIMHKNGMS-DKINVINKRSTEVKVGG--SSRADIAVREDFDTELIGEGALP-------SLQHAHDMLLVDNCK 170 (636)
T ss_pred H-HHHHHHHhcCCCc-cceeeeccccceeeecC--cchhhhhhHhhhhhhhhccccch-------hHHHHHHHhcccCCe
Confidence 6 5889999999999 99999999999998753 4679999999887633 67888 778888999999999
Q ss_pred EEcceEEEEEEEccChhhhhhc--CC--CCcccccccccchhhhhhcCCCCCCCC---CCCCCccccccccccccCCcee
Q 044245 520 IMPFKGILKACAIFCPDIWNSR--RS--LSKIEGFDHAVVNTSLGACGDLPAPKD---GPCLPFFTWQCGEIKKLSNVFT 592 (694)
Q Consensus 520 i~P~~a~l~~~~v~~~~l~~~~--~~--~~~v~G~d~s~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~ls~~~~ 592 (694)
.+|++|++|+++||+.-||+.+ .+ .++--|..+-+ .-++.++..++... .+..| .++++||++..
T Consensus 171 ~VP~ratvY~qlVES~~l~~~ndl~~~~~~ts~gv~~~p--~~lesc~G~~sv~d~ql~~~~~------~ef~~Ls~~~~ 242 (636)
T KOG1501|consen 171 TVPYRATVYCQLVESTFLCNLNDLRNNEAKTSDGVRLVP--PGLESCFGIKSVQDSQLVDAIE------KEFKLLSSEGT 242 (636)
T ss_pred eccccceEEEEEehhhhhhhhhccccccccccCCcccCC--CccccCCCchhHHHHHHhhcch------hhheeecCcce
Confidence 9999999999999999887653 11 23333432221 00111111111100 00001 24689999999
Q ss_pred EEEEeCCCCC---CCcceeEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCC-----------CCceeeeEEecC
Q 044245 593 VMEFDFSKPI---SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPD-----------KRYWKQGVKLMA 655 (694)
Q Consensus 593 l~~~d~~~~~---~~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~-----------~~hW~Q~v~~l~ 655 (694)
+|.+||.... .++..........+|++..+.+|||+.+|+.+..-+..+|. ..||.|++++++
T Consensus 243 ~F~~df~~~~~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~ 319 (636)
T KOG1501|consen 243 IFYSDFPRWIDSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPK 319 (636)
T ss_pred eEEeecchhhhcchhhhhhcCcccccccchhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCCh
Confidence 9999998643 12222223446789999999999999999988767777885 239999999998
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=237.77 Aligned_cols=313 Identities=19% Similarity=0.212 Sum_probs=217.2
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccC-----------------------------------CCEEE
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTK-----------------------------------SCHVL 71 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~-----------------------------------~~~VL 71 (694)
...|+||+.+.|.+.+|.-+.+|..+++.|.+||.+++.. ..+|+
T Consensus 626 LQ~PLQPLsDNLES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVIm 705 (1072)
T PTZ00357 626 LQLPLQPLSHHLSSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLV 705 (1072)
T ss_pred hcccCCchhhccchhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEE
Confidence 6779999999999999999999999999999999987621 03689
Q ss_pred EEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-HHcCC-------CCcEEEEecccccccccc
Q 044245 72 DIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-HVNGM-------GRNIKVINKRSDELEVGV 143 (694)
Q Consensus 72 DiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-~~ngl-------~~~I~vi~~~~~~l~~~~ 143 (694)
-+|+|.|.|--.+.++..... -+.+|+|||+|++.+...+.+. +...+ .++|++|.+|++++..+.
T Consensus 706 VVGAGRGPLVdraLrAak~~g------vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe 779 (1072)
T PTZ00357 706 LLGCGRGPLIDECLHAVSALG------VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAA 779 (1072)
T ss_pred EEcCCccHHHHHHHHHHHHcC------CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccc
Confidence 999999988554444432100 1468999999977655544443 33455 346999999999986431
Q ss_pred -----CC---CCCccEEEEccccccccCCChHHHHHHHHHhccCC----CC-------eEEcCceEEEEEEecchhhhhh
Q 044245 144 -----DI---DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE----NP-------LTVPCRVTTYGQLVESTFLWKL 204 (694)
Q Consensus 144 -----~l---~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p----~G-------~iiP~~~~~~~~~ve~~~l~~~ 204 (694)
.+ -+++|+||||++|+|..+|-..+. ++.+.++|++ +| +.||++.+.|++|+.++.||..
T Consensus 780 ~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPEC-LDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~ 858 (1072)
T PTZ00357 780 ENGSLTLPADFGLCDLIVSELLGSLGDNELSPEC-LEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAA 858 (1072)
T ss_pred ccccccccccccccceehHhhhcccccccCCHHH-HHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHH
Confidence 01 148999999999999988865554 4445567764 55 5899999999999999999863
Q ss_pred cccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCC-------------------
Q 044245 205 HDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRP------------------- 265 (694)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~------------------- 265 (694)
+.. ....|+.+.+++-... .-.....++.+.. ..+..|++|+.+|+|......
T Consensus 859 --V~~---~~~~gltvP~p~c~~~-haa~fet~YVV~L--~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i 930 (1072)
T PTZ00357 859 --VTE---AAVKGLTVPPPGCHDH-HAALNHTLLVTNL--SRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPV 930 (1072)
T ss_pred --HHH---hhhcccccCCcccccc-chhhcccceEEEe--cceeecCCCcceeEEECCCccccccccccccccccccccc
Confidence 100 0112222221100000 0000011111111 134678899999999985422
Q ss_pred CCCceeeEEEEEccCCceeEEEEEEEEeecCCCc---EEecCCCCCCCCCCccCccceeeeecC--CCceeecCCC----
Q 044245 266 DSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGT---IFYSTAPRWISTGNWCDHWKQCVWFIP--GKGMSICKGE---- 336 (694)
Q Consensus 266 ~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~---i~lST~P~~~~~~~w~~hW~Q~v~~l~--~~pi~V~~Gd---- 336 (694)
.+.+...++|++..+|++|||++||+..|+.+.+ +.|||.|... + +-+-+|++.+|||. +++..+++|+
T Consensus 931 ~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~Th-T-pgMfSWFPIFFPLeP~~~~e~~~~gq~~~~ 1008 (1072)
T PTZ00357 931 SLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVER-T-EDMYSWFPCVFALEPAQQAELQDVGQAAAE 1008 (1072)
T ss_pred ccceeEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCC-C-CCccceeeeEEecCccccceEeeccccccc
Confidence 2345678999999999999999999999999854 7799999742 2 23569999999994 1445566676
Q ss_pred -----EEEEEEE----ecceEEEEEEeee
Q 044245 337 -----ELLFHAL----HTETSVSYELKSQ 356 (694)
Q Consensus 337 -----~l~~~~~----~d~~~~~~~~~~~ 356 (694)
.|.+... -++.+|||+|+..
T Consensus 1009 ~~~~~~i~~~l~Rr~~~~e~rVwYew~v~ 1037 (1072)
T PTZ00357 1009 ESRMVAIRVQLDRRTSLAEQRVWYEWSVT 1037 (1072)
T ss_pred cccceeEEEeeeeccccccceEEEEEEEe
Confidence 5666653 3799999999876
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=147.82 Aligned_cols=143 Identities=29% Similarity=0.425 Sum_probs=129.9
Q ss_pred cccccchHHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHH
Q 044245 36 PLLATTSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKL 115 (694)
Q Consensus 36 ~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~ 115 (694)
.++..++|.++|.|..|...|..+|.+... ..+.|+|+|||+||+.||++. .+|+|+|.+|..+++
T Consensus 4 rl~V~~yh~~LL~D~eRlavF~~ai~~va~--d~~~DLGaGsGiLs~~Aa~~A------------~rViAiE~dPk~a~~ 69 (252)
T COG4076 4 RLLVDSYHLDLLRDVERLAVFTSAIAEVAE--DTFADLGAGSGILSVVAAHAA------------ERVIAIEKDPKRARL 69 (252)
T ss_pred eEeechhHhhhhhhHHHHHHHHHHHHHHhh--hceeeccCCcchHHHHHHhhh------------ceEEEEecCcHHHHH
Confidence 356678899999999999999999998654 789999999999999999984 599999999999999
Q ss_pred HHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEE
Q 044245 116 MKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQL 195 (694)
Q Consensus 116 A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ 195 (694)
|++|++.+|+. +++++.+|..+..+ ++.|+|+||+++..++.|...+.+...+. +|+.++.++|+.+..-++|
T Consensus 70 a~eN~~v~g~~-n~evv~gDA~~y~f-----e~ADvvicEmlDTaLi~E~qVpV~n~vle-FLr~d~tiiPq~v~~~a~p 142 (252)
T COG4076 70 AEENLHVPGDV-NWEVVVGDARDYDF-----ENADVVICEMLDTALIEEKQVPVINAVLE-FLRYDPTIIPQEVRIGANP 142 (252)
T ss_pred hhhcCCCCCCc-ceEEEecccccccc-----cccceeHHHHhhHHhhcccccHHHHHHHH-HhhcCCccccHHHhhccCc
Confidence 99999999985 89999999999875 68999999999999999999998888777 9999999999999999999
Q ss_pred ecch
Q 044245 196 VEST 199 (694)
Q Consensus 196 ve~~ 199 (694)
|+-+
T Consensus 143 v~~~ 146 (252)
T COG4076 143 VRRP 146 (252)
T ss_pred cccC
Confidence 9755
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=145.69 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=117.4
Q ss_pred cccccChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHh
Q 044245 372 FQLALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVA 450 (694)
Q Consensus 372 ~h~~~~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~ 450 (694)
+.+.++..+..+|.|.+|...|+.||.+... ..+.|+|+| |+|||+||++ |++|||+|. .+..+.+|++++
T Consensus 3 ~rl~V~~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~--dPk~a~~a~eN~ 74 (252)
T COG4076 3 FRLLVDSYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA--AERVIAIEK--DPKRARLAEENL 74 (252)
T ss_pred eeEeechhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh--hceEEEEec--CcHHHHHhhhcC
Confidence 3456677778999999999999999999885 368999999 9999999998 899999999 777778999999
Q ss_pred ccCCcccccEEEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEE
Q 044245 451 DPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKAC 530 (694)
Q Consensus 451 ~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~ 530 (694)
+-||+ ++++|+.++..+.+. +++|+||+|...+ .++...... ..+..++ ||+.++.|+|..++.-+.
T Consensus 75 ~v~g~--~n~evv~gDA~~y~f-----e~ADvvicEmlDT---aLi~E~qVp--V~n~vle-FLr~d~tiiPq~v~~~a~ 141 (252)
T COG4076 75 HVPGD--VNWEVVVGDARDYDF-----ENADVVICEMLDT---ALIEEKQVP--VINAVLE-FLRYDPTIIPQEVRIGAN 141 (252)
T ss_pred CCCCC--cceEEEecccccccc-----cccceeHHHHhhH---HhhcccccH--HHHHHHH-HhhcCCccccHHHhhccC
Confidence 99999 689999998877764 7899999998766 244423222 3344443 899999999999999999
Q ss_pred EccC
Q 044245 531 AIFC 534 (694)
Q Consensus 531 ~v~~ 534 (694)
||+-
T Consensus 142 pv~~ 145 (252)
T COG4076 142 PVRR 145 (252)
T ss_pred cccc
Confidence 9874
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=153.06 Aligned_cols=243 Identities=18% Similarity=0.245 Sum_probs=165.7
Q ss_pred CChhHHHHHHHHHHHHhcCCC-------CCcEEEecCC-chH---HHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 385 GDGEWRLSMVMAMRNALQGRV-------QPLCVVADDS-VFL---TICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~~-------~~~vldig~G-giL---sl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
.|.+.-..|.+||.+++..+. ..+++++|+| |=| +|-||+.- ..-++||||- .+-|.-.++. .+-
T Consensus 340 kD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEK--NPNAivtL~~-~n~ 416 (649)
T KOG0822|consen 340 KDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEK--NPNAIVTLQN-RNF 416 (649)
T ss_pred ccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEec--Ccchhhhhhh-hch
Confidence 588888999999999876541 1367889999 755 67777752 1234599999 7766544433 444
Q ss_pred CCcccccEEEeecccccccccccCCccccEEEccccccCCcc-ccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEE
Q 044245 453 NCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDG-MLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACA 531 (694)
Q Consensus 453 N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~-~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~ 531 (694)
-+.. ++||+|.++-.+...+ -+++||||||..-..-.+ +-| +=| |-..++|||+|+-||++-+=|++|
T Consensus 417 ~~W~-~~Vtii~~DMR~w~ap---~eq~DI~VSELLGSFGDNELSP-ECL------DG~q~fLkpdgIsIP~sYtSyi~P 485 (649)
T KOG0822|consen 417 ECWD-NRVTIISSDMRKWNAP---REQADIIVSELLGSFGDNELSP-ECL------DGAQKFLKPDGISIPSSYTSYIAP 485 (649)
T ss_pred hhhc-CeeEEEeccccccCCc---hhhccchHHHhhccccCccCCH-HHH------HHHHhhcCCCceEccchhhhhhcc
Confidence 5566 8999999876655421 289999999963221011 112 112 222357999999999999999999
Q ss_pred ccChhhhhhcCCCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCC---C-CCcce
Q 044245 532 IFCPDIWNSRRSLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKP---I-SPCQG 607 (694)
Q Consensus 532 v~~~~l~~~~~~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~---~-~~~~~ 607 (694)
+.+..||+.-.....---||... =.+- .++-.|++++.+++|-=-.. . .....
T Consensus 486 ImS~~l~q~v~a~~~~~~fe~~Y----------------------VV~l-~~~~~La~~q~vftF~HPN~~~nv~N~R~~ 542 (649)
T KOG0822|consen 486 IMSPKLYQEVKATNDPNAFEAPY----------------------VVLL-HNYCILAEPQPVFTFEHPNFDFNVDNSRSK 542 (649)
T ss_pred cccHHHHHHHHhcCCccccccce----------------------EEEe-cceeecCCCCceeEEecCCcccccccccce
Confidence 99999998743322221222111 0000 12345888888887743332 2 22333
Q ss_pred eEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCCC-----CceeeeEEecCcceeccccCCC
Q 044245 608 KVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDK-----RYWKQGVKLMAKPVAVGFEESG 666 (694)
Q Consensus 608 ~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~~-----~hW~Q~v~~l~~p~~v~~g~~~ 666 (694)
..+++++++|.+|||+.+||..+=.+ +.||+-|.. ..|-..+|.+++|+.|.+|+.+
T Consensus 543 s~eF~~~~~~~lHGFaGYFd~~LYkd--I~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~l 604 (649)
T KOG0822|consen 543 SVEFKVKSNGVLHGFAGYFDAVLYKD--IFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTL 604 (649)
T ss_pred eEEEecCCCceEeecchhhhhhhhhe--eeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeE
Confidence 56788999999999999999988655 579999962 2899999999999999999954
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=141.07 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=123.8
Q ss_pred CCccceeEeccCCCCCCCccccccccch-----HH---HhhCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHH
Q 044245 15 TGNSEWVVIEENEDVPESSQEPLLATTS-----YL---DMLNDSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAA 85 (694)
Q Consensus 15 ~g~~~w~~~~~~~~~p~~~~~~~l~~~~-----~~---~ml~D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa 85 (694)
+-...+..+..+||.+..+|..++.++. |+ +|--+..-..++....+++ +.+|.+|||||||.|.+++.+|
T Consensus 12 ~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 12 SKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred cccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 3445678888899999999987776532 32 2223344445555566664 7899999999999999999999
Q ss_pred HHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE-ccccccccCC
Q 044245 86 RAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS-EILDSELLGE 164 (694)
Q Consensus 86 ~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs-e~~~~~l~~e 164 (694)
+... .+|+|++.|+++.+.+++.++..|++++|+++-.|.+++. ++||-||| +.+. .++.
T Consensus 92 ~~y~-----------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfE--hvg~ 152 (283)
T COG2230 92 EEYG-----------VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFE--HVGK 152 (283)
T ss_pred HHcC-----------CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceeeehhhHH--HhCc
Confidence 9964 5999999999999999999999999999999999988764 67999998 2222 2234
Q ss_pred ChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 165 GLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 165 ~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
.-.+.++....++|+|||+++-+..+..
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 4577788888889999999986665544
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=123.22 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
|+.+|||||||+|.+++.+++..+ ..+|+|+|.|+.|++.|++++...+..++|+++++++ .... +.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP--DF 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT--TT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc--cc
Confidence 578999999999999999999433 3689999999999999999998888889999999999 2221 33
Q ss_pred CCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|++.. ....++.......+++.+.+.|+|||+++-.
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 46899999965 1222322223445667777899999998743
|
... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=142.43 Aligned_cols=111 Identities=25% Similarity=0.352 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
++...++|.+...++++|||+|||||+|++.|++.|+ .+|+|+|+++.+++.|++|++.||+++++.+.
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA-----------~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~ 216 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA-----------KKVVAIDIDPLAVEAARENAELNGVEDRIEVS 216 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB-----------SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC-----------CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 6677888999889999999999999999999999997 79999999999999999999999999888763
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
...+. ..++||+|++|++..- +-.+...+.++|+|||.++..
T Consensus 217 --~~~~~-----~~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 --LSEDL-----VEGKFDLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp --CTSCT-----CCS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred --Eeccc-----ccccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 22221 2379999999977643 345666677899999998864
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=134.65 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+..-.+++.+.+.++.+|||+|||||+|++.+++.|+ .+|+|+|++|.+++.|+.|++.|+.+..++.-
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-----------~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-----------KKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-----------ceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 6667888999999999999999999999999999998 78999999999999999999999997433322
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+..+.. ..++||+||+|++.. .+..+...+.++|+|||+++-..
T Consensus 218 ~~~~~~~~----~~~~~DvIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 218 GFLLLEVP----ENGPFDVIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccchhhc----ccCcccEEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 22222211 125899999987652 34466677778999999988664
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-11 Score=134.04 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.+. +|+|+|.++.|++.+++ .++..+++++++++......+ ..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~------------~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~-~~ 100 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG------------QVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLN-IS 100 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC------------EEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccC-CC
Confidence 467999999999999999998864 89999999999987654 234345899999998643221 11
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|+++..-+++ .......++..+.++|+|||+++.
T Consensus 101 ~~~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 101 DGSVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred CCCEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2689999997544333 223356677777889999999864
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-13 Score=136.81 Aligned_cols=153 Identities=24% Similarity=0.305 Sum_probs=103.4
Q ss_pred eeEeccCCCCCCCccccccccc-----hHHHhhCCHH---HHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCC
Q 044245 20 WVVIEENEDVPESSQEPLLATT-----SYLDMLNDSY---RNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGS 90 (694)
Q Consensus 20 w~~~~~~~~~p~~~~~~~l~~~-----~~~~ml~D~~---r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~ 90 (694)
...+..+||.++++|..++... .|+.--.+.. -.+++...+.++ +.+|.+|||||||.|.+++.+|+..+
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g- 85 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG- 85 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-
Confidence 3445667999888888777653 2332222211 123334444443 77899999999999999999999943
Q ss_pred CCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE-ccccccccCCChHHH
Q 044245 91 SDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS-EILDSELLGEGLIPT 169 (694)
Q Consensus 91 ~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs-e~~~~~l~~e~~l~~ 169 (694)
.+|+++..|++..+.|++.++..|++++|++...|..+++ .+||.||| +.+. .++....+.
T Consensus 86 ----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~E--hvg~~~~~~ 147 (273)
T PF02353_consen 86 ----------CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFDRIVSIEMFE--HVGRKNYPA 147 (273)
T ss_dssp -----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-SEEEEESEGG--GTCGGGHHH
T ss_pred ----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCCEEEEEechh--hcChhHHHH
Confidence 5999999999999999999999999999999999987754 58999998 2222 223445778
Q ss_pred HHHHHHhccCCCCeEEcCceEE
Q 044245 170 LQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 170 l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+...+.++|+|||+++-+..+.
T Consensus 148 ~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 148 FFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp HHHHHHHHSETTEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEeccc
Confidence 8888899999999998765544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-12 Score=125.59 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=92.0
Q ss_pred HHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 54 RAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 54 ~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
..+++++... +.+|.+|||||||||-+++.+++..+ .++|+++|+|+.|++.|++.+...+..+ |++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g----------~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~f 105 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG----------TGEVVGLDISESMLEVAREKLKKKGVQN-VEF 105 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC----------CceEEEEECCHHHHHHHHHHhhccCccc-eEE
Confidence 3455554443 23689999999999999999999875 4799999999999999999999888875 999
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++|+++|++++ ..||++.+. +++-+-.-.+..+....|.|+|||+++
T Consensus 106 v~~dAe~LPf~D---~sFD~vt~~---fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 106 VVGDAENLPFPD---NSFDAVTIS---FGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred EEechhhCCCCC---CccCEEEee---ehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999999999865 689999863 333333346667777778999999554
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.5e-12 Score=121.85 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=85.8
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++.+|||||||+|.+++.++++.. ..+|+++|.++.|++.|+++++.++++ ++++++++..++..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~----------~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~- 109 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARP----------ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ- 109 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCC----------CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-
Confidence 345589999999999999999998654 469999999999999999999999997 49999999988652
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|+++.+. .++.+.....++|+|||+++.-
T Consensus 110 ---~~~fDlV~~~~~~-------~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 ---EEKFDVVTSRAVA-------SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ---CCCccEEEEcccc-------CHHHHHHHHHHhcCCCeEEEEE
Confidence 4689999986321 3567777778899999998743
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=120.99 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.++++++.+++. +|+++++++.++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~----------~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~---- 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP----------ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH---- 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC----------CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc----
Confidence 488999999999999999988764 468999999999999999999999986 69999999988631
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|+++.+. .++.+.....++|+|||.++..
T Consensus 107 ~~~fD~I~s~~~~-------~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 EEQFDVITSRALA-------SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cCCccEEEehhhh-------CHHHHHHHHHHhcCCCCEEEEE
Confidence 3689999996421 2455666677899999999843
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-12 Score=120.63 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.++ ..+|+++|+|+.+++.|+++++.|++++ ++++..|..+-. .
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----------~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~----~ 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----------DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL----P 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----------CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC----C
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----------CCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc----c
Confidence 678999999999999999999886 3479999999999999999999999986 999999976532 1
Q ss_pred CCCccEEEEccccccccCCC--hHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEG--LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~--~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|+++|.......++ .+..+.....++|+|||.++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 37999999998632221111 35566666778999999875
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-10 Score=130.65 Aligned_cols=89 Identities=8% Similarity=-0.032 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
++.|.+.. +++.|||+|+| |.+|+.||+.| |++|+++|. ++.+.+.++++++.||++.++++++++++.+.-.
T Consensus 530 R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~--s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 530 RRMIGQMA---KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDM--SNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred HHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeC--CHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH
Confidence 45566554 46789999999 99999999985 899999999 7888889999999999953589999997654311
Q ss_pred cccCCccccEEEcc-cccc
Q 044245 473 DDTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~~ 490 (694)
.+ .++.|+||+. |||.
T Consensus 604 -~~-~~~fDlIilDPP~f~ 620 (702)
T PRK11783 604 -EA-REQFDLIFIDPPTFS 620 (702)
T ss_pred -Hc-CCCcCEEEECCCCCC
Confidence 12 4689999998 5665
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=124.61 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
...+|||+|||+|.+++++|++.. +.+|++||+.+.|++.|+++++.|+++++|+++++|+.++.....
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~----------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~- 112 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTE----------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV- 112 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCC----------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-
Confidence 378999999999999999999854 369999999999999999999999999999999999998763221
Q ss_pred CCCccEEEEccccccccCC---------------ChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGE---------------GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e---------------~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+||+|||||..+-.-.. ..++.+.....++|+|||.+.
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 2369999999966532111 135567777888999999764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=115.61 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=86.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++... +..+++++|.|+.|++.|+++++.++++ +++++++|+.+++. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~---------~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN---------PGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--E 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST---------TTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--C
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC---------CCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--c
Confidence 3578999999999999999995422 1368999999999999999999999998 99999999999652 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
++++||+|++...- .+......++..+.++|+++|+++-....
T Consensus 70 ~~~~~D~I~~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LEEKFDIIISNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SSTTEEEEEEESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCeeEEEEcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 23689999986322 22334556777778899999998755444
|
... |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=127.56 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=159.9
Q ss_pred CChhHHHHHHHHHHHHhcCC---------------------------------CCCcEEEecCC-chH---HHHHHHc-C
Q 044245 385 GDGEWRLSMVMAMRNALQGR---------------------------------VQPLCVVADDS-VFL---TICVARL-S 426 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~---------------------------------~~~~vldig~G-giL---sl~aA~~-g 426 (694)
.|.+.-+.|++||.+++... ...+|+++|+| |=| +|-|++. |
T Consensus 647 KDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~g 726 (1072)
T PTZ00357 647 RDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALG 726 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcC
Confidence 58888899999999887321 00368999999 744 4566653 3
Q ss_pred CCceEEEcCCCcChhHHHHH-HHHhccCCcc------cccEEEeecccccccccc------cC--CccccEEEccccccC
Q 044245 427 KTAHVLSLLPGLGDKGAQYL-RTVADPNCFS------IDRVEILQKGKKCLTMDD------TQ--QKKVDLLIGEPYYFG 491 (694)
Q Consensus 427 ~a~~V~ave~~~~~~~~~~~-~~i~~~N~l~------~~~i~vi~~~~~~~~~~~------l~--~~~vDvivsE~~~~~ 491 (694)
-.-+|||||- ++-+..++ .+..+.+... +++|+||.++..++..+. ++ .+|+||||||..-.+
T Consensus 727 vkVrIyAVEK--NPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSF 804 (1072)
T PTZ00357 727 VRLRIFAIEK--NLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSL 804 (1072)
T ss_pred CcEEEEEEec--CcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccc
Confidence 2347899999 53322222 2222333442 257999999877664321 11 248999999963211
Q ss_pred Ccc-ccCcchhhHHHHHhhcccccC-----------CCceEEcceEEEEEEEccChhhhhhcCCCCcccccccccchhhh
Q 044245 492 NDG-MLPWQNLRFWKERSKLDPVLS-----------KEVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSL 559 (694)
Q Consensus 492 ~e~-~l~w~~l~f~~~r~~~~~~L~-----------p~g~i~P~~a~l~~~~v~~~~l~~~~~~~~~v~G~d~s~~~~~~ 559 (694)
=.+ +-| +=| .- ..++|| |.|+.||..-+=|++|+.+..||..-... ...|+-..+..
T Consensus 805 GDNELSP-ECL---DG---aQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~-~~~gltvP~p~--- 873 (1072)
T PTZ00357 805 GDNELSP-ECL---EA---FHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA-AVKGLTVPPPG--- 873 (1072)
T ss_pred ccccCCH-HHH---HH---HHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh-hhcccccCCcc---
Confidence 011 122 222 11 112344 45679999999999999999998763210 01111111000
Q ss_pred hhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC--------------------CCcceeEEEEecCCeee
Q 044245 560 GACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI--------------------SPCQGKVQVEFTEPGLC 619 (694)
Q Consensus 560 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~--------------------~~~~~~~~~~~~~~g~~ 619 (694)
+.+.... ....+|=... ..+-.|++|+.+++|.-.+.. +.....+.+++..+|+|
T Consensus 874 --c~~~haa--~fet~YVV~L-~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vl 948 (1072)
T PTZ00357 874 --CHDHHAA--LNHTLLVTNL-SRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRC 948 (1072)
T ss_pred --ccccchh--hcccceEEEe-cceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcce
Confidence 0000000 0000000000 012346677777777653321 11123466788999999
Q ss_pred eEEEEEEEEEecCCCc---EEEecCCCC-C----ceeeeEEecC---cceeccccCCCCCCcceeEEEEEEEeCC
Q 044245 620 HGFALWIDWVLDSENS---IVISTGPDK-R----YWKQGVKLMA---KPVAVGFEESGRTDLCSSTLVEASFDPS 683 (694)
Q Consensus 620 ~g~~~Wfd~~~~~~~~---~~lst~P~~-~----hW~Q~v~~l~---~p~~v~~g~~~~~~~~~~~~~~~~~~~~ 683 (694)
|||+.||+..|=.+.+ +.+||.|.. + .|=...|.|+ ++..++.|+.. .....-+.++++|+-.
T Consensus 949 HGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~-~~~~~~~~i~~~l~Rr 1022 (1072)
T PTZ00357 949 CGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAA-AEESRMVAIRVQLDRR 1022 (1072)
T ss_pred eeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccc-cccccceeEEEeeeec
Confidence 9999999999876643 789999972 2 7999999998 66666666411 0012345667776644
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=125.16 Aligned_cols=105 Identities=23% Similarity=0.242 Sum_probs=74.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||||.++..+++..+ +.++|+++|.|+.|++.|++.++..+.. +|+++++|.+++++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~---------~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVG---------PNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPD 114 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS------------EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-T
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCC---------CccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCC
Confidence 45689999999999999999988754 2469999999999999999999988876 9999999999998754
Q ss_pred CCCCCccEEEEccccccccC-CChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.||+|++ ++.+. -.-.+..+....|+|+|||+++
T Consensus 115 ---~sfD~v~~----~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 115 ---NSFDAVTC----SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp ---T-EEEEEE----ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred ---CceeEEEH----HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 78999997 33332 1225556667778999999885
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=122.04 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=86.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.+|.+|||||||-|+|+..+|+.|+ +|+|+|.+++++++|+..+..+|+. |+.....++++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga------------~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-- 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA------------SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-- 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC------------eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc--
Confidence 3689999999999999999999996 9999999999999999999999984 88888888887632
Q ss_pred CCCCccEEEE-ccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 145 IDSRADILVS-EILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 145 l~~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
.++||+|+| |.+. +=.....+.....++++|||.++-....
T Consensus 122 -~~~FDvV~cmEVlE----Hv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 122 -GGQFDVVTCMEVLE----HVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -CCCccEEEEhhHHH----ccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 279999998 3222 2223455777778899999999866555
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=125.33 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+....+++.+...++.+|||+|||+|.+++.+++.|+ .+|+|+|+++.|++.|+++++.|++.+++.++
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~-----------~~V~avDid~~al~~a~~n~~~n~~~~~~~~~ 214 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGA-----------AKVVGIDIDPLAVESARKNAELNQVSDRLQVK 214 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHHcCCCcceEEE
Confidence 4555666777677889999999999999999998875 68999999999999999999999998888887
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++.... ..++||+|+++++.. .+..+...+.++|+|||.++-.
T Consensus 215 ~~~~~~~-----~~~~fDlVvan~~~~------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 215 LIYLEQP-----IEGKADVIVANILAE------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ecccccc-----cCCCceEEEEecCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence 7663221 236899999975432 2445666667899999998753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=125.10 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhhc---------cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 49 DSYRNRAYRLAIDKMV---------TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 49 D~~r~~~y~~ai~~~~---------~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
+..|.+...+.+.+.+ .++.+|||||||+|.++..+++.|. +|+|+|.++.|++.|+++
T Consensus 105 N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~------------~V~GID~s~~~i~~Ar~~ 172 (322)
T PLN02396 105 NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA------------TVTGVDAVDKNVKIARLH 172 (322)
T ss_pred ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC------------EEEEEeCCHHHHHHHHHH
Confidence 3345555555554432 2457999999999999999998764 899999999999999988
Q ss_pred HHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 120 LHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 120 ~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++.++...+|++++++.+++... .++||+|++.-+-.++ .-...++..+.++|+|||.++-.
T Consensus 173 ~~~~~~~~~i~~~~~dae~l~~~---~~~FD~Vi~~~vLeHv---~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 173 ADMDPVTSTIEYLCTTAEKLADE---GRKFDAVLSLEVIEHV---ANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred HHhcCcccceeEEecCHHHhhhc---cCCCCEEEEhhHHHhc---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 87777666899999998887532 3689999983211111 12456777788899999998744
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=111.41 Aligned_cols=108 Identities=25% Similarity=0.237 Sum_probs=90.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+++|||||||.+++.+++.++ .++|||+|.++++++..++|+++.|. ++++++.+++-+...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p----------~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~-- 98 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGP----------SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP-- 98 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCC----------CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc--
Confidence 67899999999999999999997775 68999999999999999999999996 599999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
+++ ++|.|+-. +-+-++.++++.-..|+|||+++-+..++-
T Consensus 99 ~~~-~~daiFIG-------Gg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 99 DLP-SPDAIFIG-------GGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCC-CCCEEEEC-------CCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 333 79999852 224577778877779999999998866654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-11 Score=122.45 Aligned_cols=123 Identities=14% Similarity=0.216 Sum_probs=91.2
Q ss_pred hhCCHHHHHHHHHHH----HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 46 MLNDSYRNRAYRLAI----DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 46 ml~D~~r~~~y~~ai----~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
..+...|...+.+-+ .....++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|+++++
T Consensus 20 ~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~------------~v~~vD~s~~~l~~a~~~~~ 87 (255)
T PRK11036 20 TTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGH------------QVILCDLSAEMIQRAKQAAE 87 (255)
T ss_pred CCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHH
Confidence 334455555444333 33334568999999999999999999864 89999999999999999999
Q ss_pred HcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 122 VNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 122 ~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..|+.+++++++++..++.. ..+++||+|++..+-.++ +. ...++..+.++|+|||+++
T Consensus 88 ~~g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~--~~-~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 88 AKGVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWV--AD-PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred hcCCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhh--CC-HHHHHHHHHHHcCCCeEEE
Confidence 99988899999999987642 224689999984322211 11 3456667778999999985
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=119.21 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH--HcCCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH--VNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~--~ngl~~~I~vi~~~~~~l~~ 141 (694)
+.++.+|||+|||+|.++..+++..+ +..+|+|+|.|+.|++.|+++.. ..+..++|++++++.+++++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~---------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~ 141 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVG---------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF 141 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC
Confidence 45688999999999999999888743 13599999999999999987654 22333589999999998875
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+. +.||+|++...-. +-.....++..+.+.|+|||+++
T Consensus 142 ~~---~sfD~V~~~~~l~---~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 142 DD---CYFDAITMGYGLR---NVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred CC---CCEeEEEEecccc---cCCCHHHHHHHHHHHcCcCcEEE
Confidence 32 6899998742211 11235566777778999999975
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=108.49 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=84.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
|.+|||+|||+|.+++.+++.+. .+++++|+|+.+++.|++++..+++.++++++.+|..++.. ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~-----------~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGA-----------ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCT-----------CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCC-----------CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hccC
Confidence 56899999999999999999983 59999999999999999999999998899999999988751 1123
Q ss_pred CCccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++||+|++++....... ......+.....++|+|||.++
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 78999999987643211 1234566777778999999874
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-11 Score=116.80 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++.|. +|+|+|.|+.|++.|+++++.+++. +|+++..+..++..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~------------~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~--- 92 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF------------DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTF--- 92 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC------------EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCc---
Confidence 3568999999999999999999864 8999999999999999999998885 68888888876543
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
+++||+|++...-++ +.....+.++..+.++|+|||.+
T Consensus 93 -~~~fD~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 93 -DGEYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred -CCCcCEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEE
Confidence 367999998644322 23345667888888899999985
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=123.61 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=84.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++... .+|+|+|+|+.|++.|+++++.+++.++|+++.+|..+++++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g-----------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~-- 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG-----------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE-- 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--
Confidence 4578999999999999999998743 599999999999999999999999988999999999887653
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++.....++ . ....++..+.++|+|||+++-
T Consensus 184 -~~~FD~V~s~~~~~h~--~-d~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 184 -DGQFDLVWSMESGEHM--P-DKRKFVQELARVAAPGGRIII 221 (340)
T ss_pred -CCCccEEEECCchhcc--C-CHHHHHHHHHHHcCCCcEEEE
Confidence 2689999984222111 1 245566677789999998864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=120.34 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=87.2
Q ss_pred HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc
Q 044245 61 DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE 140 (694)
Q Consensus 61 ~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~ 140 (694)
.+.+.++.+|||||||+|.++..+++... .+..+|+++|.|+.|++.|++++..++...+|++++++..+++
T Consensus 51 ~~~~~~~~~vLDlGcGtG~~~~~l~~~~~--------~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 51 ERFVQPGTQVYDLGCSLGAATLSVRRNIH--------HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred HHhCCCCCEEEEEcccCCHHHHHHHHhcC--------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 33456789999999999999988887421 0246999999999999999999998888879999999988765
Q ss_pred cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
. +.+|+|++...-+++ .......++..+.+.|+|||.++-.
T Consensus 123 ~-----~~~D~vv~~~~l~~l-~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 I-----ENASMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred C-----CCCCEEehhhHHHhC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 358999985433332 2233456777778899999998754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=119.52 Aligned_cols=107 Identities=26% Similarity=0.338 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+....+++.+.+.++.+|||+|||+|.+++.+++.|+ .+|+|+|+|+.+++.|+++++.|++.+++.+.
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~-----------~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~ 174 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGA-----------KKVLAVDIDPQAVEAARENAELNGVELNVYLP 174 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHHcCCCceEEEc
Confidence 4445666666677899999999999999999888876 57999999999999999999999986566553
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++ .+||+|++++.. ..+..+.....++|+|||.++-.
T Consensus 175 ~~~-----------~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 175 QGD-----------LKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCC-----------CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 321 269999987533 12445566667799999999853
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=115.28 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=82.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.++.|++.|+++.+.+++ ++++++.++..+++.+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~- 111 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVG---------PEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFD- 111 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCC-
Confidence 44678999999999999999988743 136999999999999999999988887 4899999999876542
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++...- -+-.....++....++|+|||+++
T Consensus 112 --~~~fD~V~~~~~l---~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 112 --DNSFDYVTIGFGL---RNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --CCCccEEEEeccc---ccCCCHHHHHHHHHHHcCcCeEEE
Confidence 2689999874221 111224456666677999999886
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=112.17 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=84.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++... +..+|+++|.++.|++.|+++++.+++.+++.++.++..+...
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~---------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-- 106 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG---------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF-- 106 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh--
Confidence 56789999999999999999988643 1368999999999999999999999976789999999876421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||.|++.. +...+..++....+.|+|||+++-
T Consensus 107 ~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 107 TINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred hcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 2336899999742 122355666666779999999884
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-10 Score=101.51 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=83.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ ..+|+++|.|+.+++.|+++++.+++. +++++.++..+.. .
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~--~ 83 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVP----------NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL--E 83 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----------CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC--h
Confidence 34578999999999999999999864 368999999999999999999988886 7899988866422 1
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
...++||+|++... ....+.+.+...++|+|||.++-..
T Consensus 84 ~~~~~~D~v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGS------GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCc------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 22368999997421 1234567777788999999988654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=114.33 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.|. +|+|+|.|+.|++.++++++.+++. +++...+..... +
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~------------~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~----~ 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY------------DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA----L 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc----c
Confidence 467999999999999999999864 8999999999999999999888874 677667765443 2
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+.+++ .....+.+...+.++|+|||+++
T Consensus 92 ~~~fD~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred cCCCCEEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 3579999986543222 23356677788888999999854
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-10 Score=111.32 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=78.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... +.++|+++|.++.+++.|+++++.+++.++++++.+|..+...
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~---------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-- 138 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIE---------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-- 138 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--
Confidence 45678999999999999999888753 1368999999999999999999999988789999999876432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+||+|++.... + .+...+.+.|+|||+++
T Consensus 139 -~~~~fD~Ii~~~~~-----~----~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 139 -KHAPFDAIIVTAAA-----S----TIPSALVRQLKDGGVLV 170 (205)
T ss_pred -cCCCccEEEEccCc-----c----hhhHHHHHhcCcCcEEE
Confidence 12589999985221 1 22234556899999885
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=112.27 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=78.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ +.++|+++|.++.+++.|+++++.+++. +|+++.+|..+...+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~---------~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~- 142 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG---------KSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEE- 142 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCc-
Confidence 56789999999999999999988754 2369999999999999999999999885 899999998754321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+||+|++.. .. +. +...+.+.|+|||+++
T Consensus 143 --~~~fD~I~~~~----~~-~~----~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 143 --NAPYDRIYVTA----AG-PD----IPKPLIEQLKDGGIMV 173 (212)
T ss_pred --CCCcCEEEECC----Cc-cc----chHHHHHhhCCCcEEE
Confidence 26899998742 11 22 2234556899999875
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-10 Score=122.30 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEeccccccccccC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG--RNIKVINKRSDELEVGVD 144 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~--~~I~vi~~~~~~l~~~~~ 144 (694)
+.+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.|+++++.|+.+ ++++++.+|..+-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P----------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---- 294 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP----------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---- 294 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----
Confidence 46999999999999999999875 469999999999999999999999864 37898888764321
Q ss_pred CCCCccEEEEccccccc--cCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSEL--LGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l--~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+++||+|+|++..+.. +.+.....++....++|+|||.++
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELY 337 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEE
Confidence 12589999999866432 222344556666678999999765
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=108.34 Aligned_cols=101 Identities=26% Similarity=0.284 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.+++.+++.++ ..+|+++|.|+.+++.|+++++.+++. +++++.++...
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~----------~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~----- 92 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFP----------SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI----- 92 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-----
Confidence 45678999999999999999998864 469999999999999999999999885 79999988642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++++||+|++.... +.++.+.....+.|+|||+++-
T Consensus 93 ~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 93 ELPGKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred hcCcCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEE
Confidence 123689999974211 2345566666779999999865
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=114.95 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-----cEEEEecccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-----NIKVINKRSDELEV 141 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-----~I~vi~~~~~~l~~ 141 (694)
|.+|||+|||+|+||..+||.|+ .|+|+|.++.|++.|++..+.+...+ ++++.+.+.+++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga------------~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA------------QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCC------------eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-
Confidence 47899999999999999999997 99999999999999999966554433 3667777766653
Q ss_pred ccCCCCCccEEEEcccccccc-CCChHHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELL-GEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~-~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||.|+|- ..+ +-..++.+....-++|+|+|+++-.
T Consensus 157 -----~~fDaVvcs----evleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 157 -----GKFDAVVCS----EVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred -----cccceeeeH----HHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 579999982 121 1112667777777899999987643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.7e-10 Score=115.59 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++..+ ..+|+|+|+|+.+++.|+++++.+++.++|+++++|..+.. +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~----------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-~--- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-P--- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-C---
Confidence 357999999999999999998864 36999999999999999999999999889999999975421 1
Q ss_pred CCCccEEEEcccccc----------ccCCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSE----------LLGEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~----------l~~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|++++...- ..+|. ....+.....++|+|||+++-.
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 247999999874321 00111 1244556667799999998744
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-10 Score=117.67 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=79.1
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|||||||||.+++.+++.++ ..+|+|+|+|+.+++.|++|++.||+ .++.++.+++.+ .+.++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----------~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-----~~~~~ 176 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----------DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-----PLRGK 176 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----------CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-----ccCCc
Confidence 799999999999999999986 46999999999999999999999999 677777776554 23469
Q ss_pred ccEEEEcccccccc----------CCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 149 ADILVSEILDSELL----------GEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 149 ~DlIvse~~~~~l~----------~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
||+|||||.+---- +|. ....+.....++|+|||.++-.
T Consensus 177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 99999998442110 111 2335556666788998776544
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=111.61 Aligned_cols=100 Identities=22% Similarity=0.268 Sum_probs=78.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... +.++|+++|.++.+++.|+++++.+++. +++++.+|..+...
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~---------~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~-- 142 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG---------RDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE-- 142 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc--
Confidence 56789999999999999999998864 1357999999999999999999999984 89999999876421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++.... +.+...+.+.|+|||+++
T Consensus 143 -~~~~fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 143 -PLAPYDRIYVTAAG---------PKIPEALIDQLKEGGILV 174 (215)
T ss_pred -ccCCCCEEEEcCCc---------ccccHHHHHhcCcCcEEE
Confidence 12589999975211 122334556899999876
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=116.03 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=84.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|..++.+++... +..+|+++|.++.|++.|+++.+.+++. +++++.+++++++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g---------~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~- 143 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG---------PTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVA- 143 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---------CCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCC-
Confidence 56789999999999999888877643 1358999999999999999999988885 899999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++.||+|+++...... .-.+.++....++|+|||+++-.
T Consensus 144 --~~~fD~Vi~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 144 --DNSVDVIISNCVINLS---PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred --CCceeEEEEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 2589999987433221 12445566667799999998753
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-10 Score=117.18 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|..++.+++.|. +|+|+|.|+.|++.++++++.+++ ++++...|..+.. +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~------------~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~----~ 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF------------DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS----I 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc----c
Confidence 456999999999999999999864 899999999999999999999888 6888888876643 2
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+..++ .....+.++..+.++|+|||.++
T Consensus 182 ~~~fD~I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 182 QEEYDFILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred cCCccEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 4789999996544332 33356677778888999999854
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=101.22 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=75.3
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCc
Q 044245 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRA 149 (694)
Q Consensus 70 VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~ 149 (694)
|||+|||+|..+..+++...+. +..+++++|+|+.|++.+++..+..+. +++++++|..++.. ..++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~-------~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~---~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAG-------PSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF---SDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------------SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH---HSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhc-------ccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc---cCCCe
Confidence 7999999999999999886200 126999999999999999999988776 79999999998764 23699
Q ss_pred cEEEEccccccccCCChHHHHHHHHHhccCCCC
Q 044245 150 DILVSEILDSELLGEGLIPTLQHAHDRLLVENP 182 (694)
Q Consensus 150 DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G 182 (694)
|+|++.......+....+..+++...++|+|||
T Consensus 69 D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999993221122455567778888888999987
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-10 Score=108.87 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.++||+|||.|..++++|+.|. .|+|+|.|+.+++.+++.++..+++ |+....|..+..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~------------~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~---- 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF------------DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF---- 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-------------EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-----
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc----
Confidence 578999999999999999999985 8999999999999999999999985 8888888877653
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++++|+|+|..+..++ .....+.+...++..++|||.++
T Consensus 92 ~~~yD~I~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 92 PEEYDFIVSTVVFMFL-QRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEE
T ss_pred cCCcCEEEEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEE
Confidence 4689999986555444 45567888888889999999765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=119.07 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 044245 50 SYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNI 129 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I 129 (694)
+..++...+.+...+.++.+|||+|||+|.+++.+++..+ ..+|+|+|+|+.|++.|+++++.++. ++
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p----------~a~VtAVDiS~~ALe~AreNa~~~g~--rV 302 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP----------DAFVRASDISPPALETARKNAADLGA--RV 302 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCC--cE
Confidence 3345555665555556678999999999999999988753 36899999999999999999998875 79
Q ss_pred EEEeccccccccccCCCCCccEEEEccccccc------------------c-CCC---hHHHHHHHHHhccCCCCeEE
Q 044245 130 KVINKRSDELEVGVDIDSRADILVSEILDSEL------------------L-GEG---LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 130 ~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l------------------~-~e~---~l~~l~~~~~~~L~p~G~ii 185 (694)
+++++|+.+...+ ..++||+|+|||..... . +++ .+..+.....++|+|||.++
T Consensus 303 ~fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 303 EFAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred EEEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998654321 12579999999854210 0 111 22345555567899999864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-10 Score=98.45 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=71.9
Q ss_pred EEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCcc
Q 044245 71 LDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRAD 150 (694)
Q Consensus 71 LDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~D 150 (694)
||+|||+|..+..+++.+. .+|+++|.++++++.++++.... ++.++.++.++++++. +.||
T Consensus 1 LdiG~G~G~~~~~l~~~~~-----------~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~---~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG-----------ASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPD---NSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT-----------CEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-T---T-EE
T ss_pred CEecCcCCHHHHHHHhccC-----------CEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcccc---cccc
Confidence 8999999999999999832 69999999999999999876543 4568999999987643 7899
Q ss_pred EEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 151 ILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 151 lIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|++.-.-.++ .....++..+.|+|+|||+++
T Consensus 63 ~v~~~~~~~~~---~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 63 VVFSNSVLHHL---EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp EEEEESHGGGS---SHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccceeec---cCHHHHHHHHHHHcCcCeEEe
Confidence 99985433333 445666677788999999886
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=112.20 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=84.9
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
..+.++.+|||||||+|.++..+++.... +..+|+++|.|+.|++.|+++++..+...+++++++++.+++.
T Consensus 49 ~~~~~~~~iLDlGcG~G~~~~~l~~~~~~--------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 120 (239)
T TIGR00740 49 RFVTPDSNVYDLGCSRGAATLSARRNINQ--------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI 120 (239)
T ss_pred HhCCCCCEEEEecCCCCHHHHHHHHhcCC--------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence 34457789999999999999999887420 2368999999999999999999877766689999999988753
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+|+|++...-+++ .......++..+.+.|+|||.++-.
T Consensus 121 -----~~~d~v~~~~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 -----KNASMVILNFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -----CCCCEEeeecchhhC-CHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 358988874322222 2222345667777899999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=107.29 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=80.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|+++++.++. +++++.+|..+..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK------------CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC------------EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 3467899999999999999998764 899999999999999999998886 5888988876532
Q ss_pred CCCCccEEEEccccccccC------------------CChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLG------------------EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~------------------e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++++.....-. ...+..++....++|+|||+++-
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 258999999875432211 00245567777789999998754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=109.16 Aligned_cols=108 Identities=19% Similarity=0.075 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc-cccccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS-DELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~-~~l~~~~~ 144 (694)
++.+|||||||+|.++..+++..+ ..+|+|+|.|+.|++.|+++++.++++ +++++++++ +.+... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----------~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~-~ 107 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----------DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDM-F 107 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----------CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHH-c
Confidence 468999999999999999988764 358999999999999999999999884 799999998 655410 1
Q ss_pred CCCCccEEEEcccccccc--C---CChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELL--G---EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~--~---e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++.||+|++........ . ....+.++..+.++|+|||.++
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 136799999853221110 0 0124566777788999999986
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-10 Score=120.92 Aligned_cols=145 Identities=22% Similarity=0.226 Sum_probs=99.6
Q ss_pred eEeccCCCCCCCccccccccc-----hHHHhhC--CHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCC
Q 044245 21 VVIEENEDVPESSQEPLLATT-----SYLDMLN--DSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSD 92 (694)
Q Consensus 21 ~~~~~~~~~p~~~~~~~l~~~-----~~~~ml~--D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~ 92 (694)
..+..+||.+.++|..++... .|+.--. +..-..++...+.+. +.++.+|||||||+|.++..+++..+
T Consensus 114 ~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--- 190 (383)
T PRK11705 114 IVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--- 190 (383)
T ss_pred HhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---
Confidence 455677999998888766652 2332111 111122333333443 56789999999999999999998753
Q ss_pred CCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHH
Q 044245 93 STTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQH 172 (694)
Q Consensus 93 ~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~ 172 (694)
.+|+|+|.|+.+++.|+++++ ++ ++++...+..++ +++||.|++..+-. .++....+.++.
T Consensus 191 --------~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l------~~~fD~Ivs~~~~e-hvg~~~~~~~l~ 251 (383)
T PRK11705 191 --------VSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL------NGQFDRIVSVGMFE-HVGPKNYRTYFE 251 (383)
T ss_pred --------CEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc------CCCCCEEEEeCchh-hCChHHHHHHHH
Confidence 589999999999999998874 44 477877776654 36899999843221 122333566777
Q ss_pred HHHhccCCCCeEEcC
Q 044245 173 AHDRLLVENPLTVPC 187 (694)
Q Consensus 173 ~~~~~L~p~G~iiP~ 187 (694)
.+.++|+|||+++-.
T Consensus 252 ~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 252 VVRRCLKPDGLFLLH 266 (383)
T ss_pred HHHHHcCCCcEEEEE
Confidence 788899999998754
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=106.70 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.++..++ .+|+++|.++.+++.|++|++.+++. +++++++|..+... ..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-----------~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~--~~ 118 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-----------AGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLA--QP 118 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHh--hc
Confidence 578999999999999997665565 59999999999999999999999985 79999999876421 12
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHh--ccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDR--LLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~--~L~p~G~ii 185 (694)
.++||+|+++|... .+..+.+++.+.. +|.|+++++
T Consensus 119 ~~~fDlV~~DPPy~----~g~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 119 GTPHNVVFVDPPFR----KGLLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred CCCceEEEECCCCC----CChHHHHHHHHHHCCCcCCCcEEE
Confidence 24699999998742 3445555544432 356665554
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-10 Score=117.61 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
|+---++|++.. ++++.|||+||| ||||+.||++| |++|+|++- .+.|.+.++++++.||++ +++++.. ..
T Consensus 148 T~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~Di--Dp~Av~~a~~N~~~N~~~-~~~~v~~--~~ 219 (295)
T PF06325_consen 148 TRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDI--DPLAVEAARENAELNGVE-DRIEVSL--SE 219 (295)
T ss_dssp HHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEES--SCHHHHHHHHHHHHTT-T-TCEEESC--TS
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecC--CHHHHHHHHHHHHHcCCC-eeEEEEE--ec
Confidence 334456677765 467899999999 99999999997 999999998 788889999999999998 8888841 11
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+...+++|+||+.... ..|. -....+.++|+|||.++-+
T Consensus 220 -----~~~~~~~dlvvANI~~---------~vL~--~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 220 -----DLVEGKFDLVVANILA---------DVLL--ELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -----CTCCS-EEEEEEES-H---------HHHH--HHHHHCHHHEEEEEEEEEE
T ss_pred -----ccccccCCEEEECCCH---------HHHH--HHHHHHHHhhCCCCEEEEc
Confidence 1223889999998632 2221 2223344579999987764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=114.66 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=82.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++.+++.++|+++++|+.+.. + ++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-~---~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-P---GR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-C---CC
Confidence 6899999999999999998864 36899999999999999999999999888999999975521 1 24
Q ss_pred CccEEEEccccccc----------cCCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 148 RADILVSEILDSEL----------LGEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 148 ~~DlIvse~~~~~l----------~~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+||+|++++..... .+|. ....+.....++|+|||.++-.
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 79999998743210 0111 2345566667799999998743
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=112.02 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=82.0
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||+|||+|.+++.+++..+ ..+|+|+|+|+.+++.|+++++.+++.++++++.+|+.+.. ...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----AGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC----cCC
Confidence 6899999999999999999864 36899999999999999999999999878999999976521 113
Q ss_pred CccEEEEcccccc----------ccCCC------------hHHHHHHHHHhccCCCCeEEcC
Q 044245 148 RADILVSEILDSE----------LLGEG------------LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 148 ~~DlIvse~~~~~----------l~~e~------------~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+||+|++++...- ..+|. .+..+.....++|+|||.++-.
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 7999999874321 11121 2345566666799999987643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=108.06 Aligned_cols=105 Identities=23% Similarity=0.202 Sum_probs=80.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. .+|+++|.|+.+++.|+++++.+++ +++++++|+.+..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~-----------~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~--- 97 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGA-----------GSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAV--- 97 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhc---
Confidence 55678999999999999999998754 5899999999999999999998887 5889998876532
Q ss_pred CCCCCccEEEEccccccccC----------------CC--hHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLG----------------EG--LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~----------------e~--~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++++....... ++ .+..+.....++|+|||+++
T Consensus 98 -~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 98 -EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred -cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 1258999999864321100 00 13445555667999999988
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=111.40 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=83.5
Q ss_pred HHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
....++... +.++.+|||||||+|..+..+++... .+|+++|.++.|++.|+++... .++|.++.
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~-----------~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~ 105 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG-----------AHVHGVDICEKMVNIAKLRNSD---KNKIEFEA 105 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC-----------CEEEEEECCHHHHHHHHHHcCc---CCceEEEE
Confidence 345555554 56789999999999999988887543 5999999999999999987643 35899999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++..+.+++ +++||+|++...-.+ +.......++..+.++|+|||.++-
T Consensus 106 ~D~~~~~~~---~~~FD~V~s~~~l~h-~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 106 NDILKKDFP---ENTFDMIYSRDAILH-LSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCcccCCCC---CCCeEEEEEhhhHHh-CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 998766542 268999998421111 1111355677777789999999874
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=108.10 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=77.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++..+ .++|+|+|.++.|++.+.++++.. .+|.++.+|..+.....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~----------~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE----------EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhh
Confidence 56789999999999999999998753 258999999999999887776643 47889999986521111
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++++||+|+++.-. ......++....++|+|||.++-
T Consensus 137 ~l~~~~D~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 137 HVVEKVDVIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hccccCCEEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEE
Confidence 234679999976321 11123445666779999998764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=114.95 Aligned_cols=102 Identities=25% Similarity=0.242 Sum_probs=79.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.|+++++.|++. .+++..|..+ ..+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p----------~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~-----~~~ 259 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP----------KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS-----DIK 259 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc-----ccC
Confidence 45899999999999999999875 358999999999999999999999985 4566666543 134
Q ss_pred CCccEEEEccccccccCC--ChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGE--GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e--~~l~~l~~~~~~~L~p~G~ii 185 (694)
++||+|+|++..+..... .....++....++|+|||.++
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 789999999865432222 234566777778999999875
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=108.47 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=81.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
++|||||||+|.++..+++..+ ..+|+++|.|+.+++.|+++++..|+.++++++..|..+.+. ++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----CC
Confidence 4799999999999999998863 358999999999999999999999999999999998865432 35
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+||+|++.-+-... ...+.++..+.++|+|||.++-
T Consensus 67 ~fD~I~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 67 TYDLVFGFEVIHHI---KDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCEeehHHHHHhC---CCHHHHHHHHHHHcCCCCEEEE
Confidence 89999974222211 1256677778889999999884
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=105.42 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-cC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-VD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~~ 144 (694)
++.+|||++||+|.+++.++++|+ .+|+++|.++.+++.+++|++.+++.++++++++|..+.... ..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-----------~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~ 117 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-----------KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK 117 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-----------CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence 588999999999999999999987 689999999999999999999999987899999998553210 01
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHH--HhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAH--DRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~--~~~L~p~G~iiP 186 (694)
....+|+|+.+|.... ...+.+...+ ..+|+++|.++-
T Consensus 118 ~~~~~dvv~~DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 118 KPTFDNVIYLDPPFFN----GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred cCCCceEEEECcCCCC----CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 1124899999886642 2333333322 347888887663
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=112.62 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=79.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++++|||||||+|.++..+++.|+ .+|+|+|.|+.|+..++...+..+...+|.++.+++++++.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~-----------~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA-----------KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--- 186 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-----------CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---
Confidence 3578999999999999999999886 57999999999987665544443434589999999988753
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|+|..+ +.+-.....++..+.+.|+|||.++-.
T Consensus 187 -~~~FD~V~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 -LKAFDTVFSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred -cCCcCEEEECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 468999998422 212223455666777899999998754
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=111.02 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=89.2
Q ss_pred HHHHHHHhh---ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDKM---VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~~---~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
.|.+++... ..++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++...++..+++++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p----------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v 121 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP----------DTRQTAVEINPQVIAVARNHFELPENGERFEV 121 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEE
Confidence 455555332 23468999999999999999988764 46899999999999999998876665569999
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcC
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+.+|..+... ..+++||+|+.+.+......+. ....+.....+.|+|||+++-+
T Consensus 122 ~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 122 IEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9999876531 2346899999986543222221 2245666677799999998753
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=111.48 Aligned_cols=112 Identities=12% Similarity=-0.000 Sum_probs=80.5
Q ss_pred HHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 58 LAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 58 ~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
+.+.+. ..++++|||||||+|.++..+++.|+ .+|+|+|.|+.|+..++...+..+...++.++..+.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-----------~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i 180 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-----------KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI 180 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-----------CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH
Confidence 344442 45689999999999999998888876 589999999999877654433323334788888888
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++++. ..+||+|+|.-+- .+-.....++..+++.|+|||.++-.
T Consensus 181 e~lp~----~~~FD~V~s~gvL---~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 181 EQLHE----LYAFDTVFSMGVL---YHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHCCC----CCCcCEEEEcchh---hccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 87753 2479999985322 22223445666777899999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-09 Score=103.04 Aligned_cols=105 Identities=25% Similarity=0.244 Sum_probs=79.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++..+ ..+|+++|.|+.|++.|+++++.+++. +++++.++..+.. .
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~----------~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~--~ 104 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCP----------KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECL--A 104 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHH--h
Confidence 34678999999999999999987753 369999999999999999999999985 7999999876521 1
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.+...+|.++.+. ...++.++....++|+|||.++-..
T Consensus 105 ~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 105 QLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred hCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2223567766531 1234566666677899999987553
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=109.71 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||.|.+++.+++..+ ..+++-+|.|..+++.||+|++.|+++.. .++..+..+ ...
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p----------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~-----~v~ 222 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP----------QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYE-----PVE 222 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC----------CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccc-----ccc
Confidence 45999999999999999999985 57999999999999999999999999743 666666544 223
Q ss_pred CCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeE
Q 044245 147 SRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~i 184 (694)
++||+|||||.-+.... ...-..++....++|++||.+
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEE
Confidence 58999999996643221 112236666677899999965
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-09 Score=116.82 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=87.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++++|||+|||+|.+++.++..++ .+|+++|.|+.+++.|++|++.||+. ++++++++|+.++....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga-----------~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGC-----------SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH
Confidence 4589999999999999998877654 69999999999999999999999996 58999999987753100
Q ss_pred -CCCCCccEEEEccccccccCCC-------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 -DIDSRADILVSEILDSELLGEG-------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~l~~e~-------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||+|++++.... .... .+..+.....++|+|||.++-++++-+
T Consensus 288 ~~~~~~fDlVilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred HhcCCCCCEEEECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 01257999999987532 1111 123344455679999999987665544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=125.56 Aligned_cols=117 Identities=18% Similarity=0.115 Sum_probs=89.2
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~ 135 (694)
++.+.+.. ++++|||+|||||.+++.+++.|+ .+|+++|.|+.+++.|++|++.||+. ++++++++|
T Consensus 530 R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga-----------~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D 597 (702)
T PRK11783 530 RRMIGQMA-KGKDFLNLFAYTGTASVHAALGGA-----------KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQAD 597 (702)
T ss_pred HHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCC-----------CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEcc
Confidence 34454433 588999999999999999999876 58999999999999999999999997 689999999
Q ss_pred ccccccccCCCCCccEEEEccccccccC--------CChHHHHHHHHHhccCCCCeEEcC
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLG--------EGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~--------e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+... .+.++||+||+++.....-. ......+.....++|+|||.++-.
T Consensus 598 ~~~~l~--~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 598 CLAWLK--EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHH--HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 876421 12468999999986532110 112334555566799999988754
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=100.24 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|+.|+|+|||||.|++.++-.|+ .+|+|+|+++++++.+++|+.+ +.++|.++.+|.+++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-----------~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~----- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-----------SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR----- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-----------cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----
Confidence 578999999999999999999997 7999999999999999999998 4458999999998864
Q ss_pred CCCccEEEEcc-ccccccCCChHHHHHHHHH
Q 044245 146 DSRADILVSEI-LDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 146 ~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~ 175 (694)
.++|.++.|| +|.-.-+ .-.+.+..+++
T Consensus 107 -~~~dtvimNPPFG~~~rh-aDr~Fl~~Ale 135 (198)
T COG2263 107 -GKFDTVIMNPPFGSQRRH-ADRPFLLKALE 135 (198)
T ss_pred -CccceEEECCCCcccccc-CCHHHHHHHHH
Confidence 6899999887 3433212 23455555554
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-09 Score=105.01 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
...+|||||||+|.++..+++..+ ..+|+|+|.++.|++.|+++++.+++. +|+++++++.++......
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p----------~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~ 84 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP----------DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP 84 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC----------CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC
Confidence 457999999999999999998865 468999999999999999999999986 899999999875411111
Q ss_pred CCCccEEEEcccccccc-----CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL-----GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~-----~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.+|.|+.+..+...- ..-..+.++..+.++|+|||.++-
T Consensus 85 ~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 85 DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 24799998864322110 011235677777889999999753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.3e-09 Score=112.98 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=85.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||||.+++.++..++ +|+|+|.|+.|++.|++|++.+|+.+ +.++.+|..+++..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~------------~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~- 245 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA------------KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS- 245 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC------------eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc-
Confidence 56788999999999999998888764 89999999999999999999999975 89999999887642
Q ss_pred CCCCCccEEEEccccccccC---C---ChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLG---E---GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~---e---~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++++....-.. + .....++....+.|+|||+++
T Consensus 246 --~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 246 --SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred --cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 368999999975432111 1 224566777778999999764
|
This family is found exclusively in the Archaea. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=108.54 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=77.3
Q ss_pred HHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 57 RLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
...+... ..++.+|||||||+|.++..+++..+ ..+|+|+|.|+.|++.|++. +++++.++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p----------~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d 80 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWP----------GAVIEALDSSPEMVAAARER--------GVDARTGD 80 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHhc--------CCcEEEcC
Confidence 3444443 34678999999999999999998853 35899999999999998752 47788899
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++.. .++||+|++...-.++ . ....++..+.+.|+|||.++-
T Consensus 81 ~~~~~~----~~~fD~v~~~~~l~~~-~--d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 81 VRDWKP----KPDTDVVVSNAALQWV-P--EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hhhCCC----CCCceEEEEehhhhhC-C--CHHHHHHHHHHhCCCCcEEEE
Confidence 877631 2589999996433322 1 245566666779999998763
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-09 Score=106.00 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=90.0
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
+...+.+. .+.++|||||||+|..++.++++.+ +.++|+++|.++++++.|+++++.+|+.++|+++.++
T Consensus 59 ~L~~l~~~-~~~~~vLEiGt~~G~s~l~la~~~~---------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd 128 (234)
T PLN02781 59 FLSMLVKI-MNAKNTLEIGVFTGYSLLTTALALP---------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD 128 (234)
T ss_pred HHHHHHHH-hCCCEEEEecCcccHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc
Confidence 34444443 3478999999999998888887743 2479999999999999999999999999999999999
Q ss_pred ccccccc--c-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 136 SDELEVG--V-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 136 ~~~l~~~--~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
..+.... . ...++||+|+.+.- ......+.....++|+|||.++-+..-..+.
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~ 184 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGF 184 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCe
Confidence 8764210 0 01358999997521 1223445555567999999998765544443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-09 Score=106.76 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||+|.+++.+++..+ ..+|+++|.|+.+++.|++|++.|+ ++++++|+.+... ....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----------~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~-~~~~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----------GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP-TALR 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc-hhcC
Confidence 35899999999999999988754 2589999999999999999999876 3678888765321 1123
Q ss_pred CCccEEEEccccccc-----c------CC---------C---hHHHHHHHHHhccCCCCeEEcC
Q 044245 147 SRADILVSEILDSEL-----L------GE---------G---LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 147 ~~~DlIvse~~~~~l-----~------~e---------~---~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||+|++|+...-. + +| + .+..+.....++|+|||+++-.
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 579999999864310 0 01 1 2345666667899999988743
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=102.21 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=80.4
Q ss_pred HHHHHHHhhccCC--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 55 AYRLAIDKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 55 ~y~~ai~~~~~~~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
+|...+...+..+ .++||+|||.|.++..+|.++. +++++|.++.+++.|++++. +.+ +|+++
T Consensus 30 K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd------------~LlavDis~~Al~~Ar~Rl~--~~~-~V~~~ 94 (201)
T PF05401_consen 30 KYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD------------RLLAVDISPRALARARERLA--GLP-HVEWI 94 (201)
T ss_dssp HHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE------------EEEEEES-HHHHHHHHHHTT--T-S-SEEEE
T ss_pred HHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC------------ceEEEeCCHHHHHHHHHhcC--CCC-CeEEE
Confidence 4554454444443 6899999999999999999874 99999999999999998875 444 89999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
..+..+.. .+++||+||.-=+.+++-....+..+...+...|+|||.+|-..+
T Consensus 95 ~~dvp~~~----P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 95 QADVPEFW----PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECcCCCCC----CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99987753 237999886543555553334566666667779999999987543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=106.67 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=78.9
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
-+.+|.+|||.|+|||.++..++++.+ +.++|+..|..++.++.|+++++.+|+.++|++.++|+.+-.++
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~---------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVG---------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHT---------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhC---------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 378999999999999999999999876 46899999999999999999999999999999999998754433
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhcc-CCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLL-VENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L-~p~G~ii 185 (694)
.++...+|.|+.++... ...+....+.| ++||+++
T Consensus 108 ~~~~~~~DavfLDlp~P--------w~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 108 EELESDFDAVFLDLPDP--------WEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TT-TTSEEEEEEESSSG--------GGGHHHHHHHE-EEEEEEE
T ss_pred ccccCcccEEEEeCCCH--------HHHHHHHHHHHhcCCceEE
Confidence 34456899999886552 22223334467 7888764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.9e-09 Score=102.32 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc-c-c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-G-V 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-~-~ 143 (694)
++.++||+|||||.+|+.++..-+ .+.|+|+|.|+.++.+|.+|++.+++.++|.+++-+++.-.. + .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~----------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~ 217 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP----------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP 217 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC----------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc
Confidence 456899999999999999887665 579999999999999999999999999999999765443211 1 1
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.+.++.|+++||+.+
T Consensus 218 l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 218 LLEGKIDLLVSNPPY 232 (328)
T ss_pred cccCceeEEecCCCc
Confidence 344799999999854
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=101.06 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=84.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc--EEEEeccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN--IKVINKRSDELEVG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~--I~vi~~~~~~l~~~ 142 (694)
.++.+|||++||||-+++.+.+....+. .....+|+.+|+|++|+..+++++++.++.+. +.++++|+++++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~----~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQF----GDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcccc----CCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 3568999999999999999998864110 01236899999999999999999988888665 99999999999986
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ ..+|+.... .++-+-..++..+....|.|+|||++.
T Consensus 175 d---~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 175 D---DSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred C---CcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 5 589987652 222232234444445556999999876
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-09 Score=116.28 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++..+ ..+|+|+|.|+.|++.|+++...++. ++.++.+|..+++. .-.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P----------~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~-~fe 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE----------DKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSS-SFE 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCcc-ccC
Confidence 578999999999999888887754 46999999999999999988766553 68889999877641 011
Q ss_pred CCCccEEEEcccccccc----------CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL----------GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~----------~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++..+.+.++ ....+..++..+.+.|+|||.++-
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 36899999865332221 112344566667789999999875
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=104.87 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=73.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||||.++..+++..+ +.++|+++|.++.+++.|+++++..++. +|+++.+|...-..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg---------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~-- 137 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG---------PVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP-- 137 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS---------TTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG--
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC---------ccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc--
Confidence 77899999999999999999999865 2468999999999999999999999986 89999999654321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+||.|++. ... +.... .+-..|++||+++
T Consensus 138 -~~apfD~I~v~----~a~-~~ip~----~l~~qL~~gGrLV 169 (209)
T PF01135_consen 138 -EEAPFDRIIVT----AAV-PEIPE----ALLEQLKPGGRLV 169 (209)
T ss_dssp -GG-SEEEEEES----SBB-SS--H----HHHHTEEEEEEEE
T ss_pred -cCCCcCEEEEe----ecc-chHHH----HHHHhcCCCcEEE
Confidence 12589999974 111 22222 3445789999876
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=101.23 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=75.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. +|+++|.++.+++.|+++++.+++. +++++.++..+...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~------------~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 140 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR------------RVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP-- 140 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC------------EEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC--
Confidence 45678999999999999998888753 8999999999999999999999886 69999998754211
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++... .+.+...+.+.|+|||+++
T Consensus 141 -~~~~fD~I~~~~~---------~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 141 -AYAPFDRILVTAA---------APEIPRALLEQLKEGGILV 172 (212)
T ss_pred -cCCCcCEEEEccC---------chhhhHHHHHhcCCCcEEE
Confidence 1268999997421 1222334556899999876
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.9e-10 Score=97.20 Aligned_cols=99 Identities=22% Similarity=0.186 Sum_probs=60.2
Q ss_pred EEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCcc
Q 044245 71 LDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRAD 150 (694)
Q Consensus 71 LDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~D 150 (694)
||||||+|.++..+++... ..+++++|+|+.|++.|+++....+.. +...+.....+... ....++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~----------~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----------DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFD-YDPPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----------EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----S
T ss_pred CEeCccChHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhh-cccccccc
Confidence 7999999999999998853 469999999999999999888887654 44444444333321 11225899
Q ss_pred EEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 151 ILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 151 lIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
+|++.-+-+++ ..+..++..+.++|+|||++
T Consensus 69 ~V~~~~vl~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence 99985333333 34556677778899999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-09 Score=116.30 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=80.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++.+++.++|+++++|+.+.. ..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p----------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~~ 204 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP----------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----EK 204 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC----------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----cC
Confidence 46899999999999999887753 36999999999999999999999999889999999975421 12
Q ss_pred CCccEEEEcccccc-------------------ccC-CC---hHHHHHHHHHhccCCCCeEEc
Q 044245 147 SRADILVSEILDSE-------------------LLG-EG---LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 147 ~~~DlIvse~~~~~-------------------l~~-e~---~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|+||+.... +.+ +. .+..+.....++|+|||.++-
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 58999999874321 111 11 123455566679999998764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=115.65 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... .+|+|+|+|+.|++.|+++.. +...+++++.+|..+.+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~- 329 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD-----------VHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYP- 329 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCC-
Confidence 34678999999999999998888643 589999999999999998765 4556899999998876542
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|+|.-. +.+-.-.+.++..+.++|+|||.++-.
T Consensus 330 --~~~fD~I~s~~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 330 --DNSFDVIYSRDT---ILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred --CCCEEEEEECCc---ccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 258999998422 112223556777778899999998743
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=101.86 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=86.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||.|+|||.+++.+|++-+ +.++|+..|..++.++.|++|++..++.++|++..+|..+...
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg---------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-- 160 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVG---------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-- 160 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhC---------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--
Confidence 67899999999999999999999765 3589999999999999999999999999889999999888653
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.||.|+.++.+ ....++.....|+|||.++
T Consensus 161 --~~~vDav~LDmp~--------PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 161 --EEDVDAVFLDLPD--------PWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred --ccccCEEEEcCCC--------hHHHHHHHHHHhCCCcEEE
Confidence 2489999987655 4455556667999998764
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=103.42 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+|||+|||+|.++..+++..+ ..+|+++|.++.+++.|+++++.+++. ++++++++..+.. .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~----------~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~----~ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP----------DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPL----P 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccC----c
Confidence 456999999999999999998754 358999999999999999999999986 7999999986621 1
Q ss_pred CCCccEEEEccccccc-----cC------CC------------hHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSEL-----LG------EG------------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l-----~~------e~------------~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++++..... +. |. ....+.....++|+|||.++-
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 3689999998754321 00 10 012455566779999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=105.91 Aligned_cols=96 Identities=21% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|+++.. .+.++.+|.++++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~--- 100 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS------------QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA--- 100 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC------------eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC---
Confidence 357999999999999998887653 89999999999999987532 245788888877643
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|+++..- ........++..+.++|+|||.++
T Consensus 101 ~~~fD~V~s~~~l---~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 101 TATFDLAWSNLAV---QWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred CCcEEEEEECchh---hhcCCHHHHHHHHHHHcCCCeEEE
Confidence 2589999986322 122235566667778999999887
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-09 Score=100.64 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=77.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc-cccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE-LEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~-l~~~ 142 (694)
+.++.+|||||||||..+..+|+... +|+++|..+..++.|+++.+..|+. ||.++++|... ++
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~------------~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~-- 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG------------RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP-- 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC------------eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC--
Confidence 57789999999999999999999974 9999999999999999999999997 59999999654 22
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE-cCc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV-PCR 188 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii-P~~ 188 (694)
...+||.|+..- . .+...+.+ -..|++||+++ |-.
T Consensus 135 --~~aPyD~I~Vta----a-a~~vP~~L----l~QL~~gGrlv~PvG 170 (209)
T COG2518 135 --EEAPYDRIIVTA----A-APEVPEAL----LDQLKPGGRLVIPVG 170 (209)
T ss_pred --CCCCcCEEEEee----c-cCCCCHHH----HHhcccCCEEEEEEc
Confidence 125899998631 1 12223333 34689999876 443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=104.08 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=76.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..+|+++|.|+.|++.|+++. .++.++.+|..++..
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-- 90 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP----------AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-- 90 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--
Confidence 34678999999999999999998753 369999999999999998753 268888888876532
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ . -...++..+.+.|+|||.++-
T Consensus 91 --~~~fD~v~~~~~l~~~--~-d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 91 --PQALDLIFANASLQWL--P-DHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred --CCCccEEEEccChhhC--C-CHHHHHHHHHHhcCCCcEEEE
Confidence 2589999986433222 1 244566667779999998765
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=99.01 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=80.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~l~~~~ 143 (694)
.++++|||+|||+|.+++.+++.+ .+|+++|.++.+++.++++++.+++.++ +.++.+|+.+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF--- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---
Confidence 467899999999999999999885 4999999999999999999999988644 888888875532
Q ss_pred CCCCCccEEEEccccccc---------------cC---CChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSEL---------------LG---EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l---------------~~---e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++++..... .+ ...++.+...+.++|+|||.++.
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 12479999987543210 00 11234566666789999997763
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-09 Score=102.52 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=77.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||+|||+|.+++.+++..... +..+|+++|+++.+++.|+++.. ++.++++|..... .+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~-------~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~----~~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA-------KPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE----FD 112 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC-------CCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc----cc
Confidence 6799999999999999998864210 13589999999999999997642 5788998887643 23
Q ss_pred CCccEEEEccccccccC-------CC--hHHHHHHHHHhccCCCCeEEcCce
Q 044245 147 SRADILVSEILDSELLG-------EG--LIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~-------e~--~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
++||+||+||...-+-. .+ ....++....+++++|+.|+|...
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 68999999996652211 11 233455555568888888888754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=102.30 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCCHH-HHHHH-HHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-cCCCCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGLL-SMMAA-RAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-NGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~l-sl~aa-~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+++|+|||||.|.+ ++.++ ++.+ .++++++|.++.+++.|++.++. .++.++|++..+|..++..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p----------~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP----------TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-
Confidence 578999999997744 44444 3433 57999999999999999999965 8898899999999887531
Q ss_pred cCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcCce
Q 044245 143 VDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
. .++||+|++. .+++ ......++..+.+.|+|||.++-..+
T Consensus 192 -~-l~~FDlVF~~----ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 -S-LKEYDVVFLA----ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -c-cCCcCEEEEe----cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 1 3689999985 2222 23455677777789999999987653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-08 Score=105.79 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=76.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..++|+++|.++.+++.|+++++.+|.. ++.++.+|..+....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~---------~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~- 146 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVG---------EKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE- 146 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-
Confidence 56789999999999999999998764 1247999999999999999999999984 799999987654321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++. .. .+.+...+.+.|+|||+++
T Consensus 147 --~~~fD~Ii~~----~g-----~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 147 --FAPYDVIFVT----VG-----VDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred --cCCccEEEEC----Cc-----hHHhHHHHHHhcCCCCEEE
Confidence 1579999974 11 2222334456899999865
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=100.27 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=71.9
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+.+.....++.+|||||||||.++..+++.+. .+|+|+|.|++|++.|++. ...++++.
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~-----------~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~ 101 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVFK-----------YYVVALDYAENMLKMNLVA---------DDKVVGSF 101 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcC-----------CEEEEECCCHHHHHHHHhc---------cceEEech
Confidence 334444344578999999999999999988842 4899999999999998753 12467888
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENP 182 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G 182 (694)
+++++++ ++||+|++.. .+-+-.-.+..+....+.|+|.+
T Consensus 102 ~~lp~~d---~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 102 EALPFRD---KSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhCCCCC---CCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 8876533 6899999842 12122235566777778999843
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=100.68 Aligned_cols=102 Identities=23% Similarity=0.187 Sum_probs=75.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+|+|.|+.|++.|+++...++..+++.+..+++.++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~------------~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA------------IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---- 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----
Confidence 4578999999999999999988753 899999999999999999988887678999999987653
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++||+|++.-+-.+ +.+..+..++..+.+++++++.+.
T Consensus 118 --~~fD~ii~~~~l~~-~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 118 --GEFDIVVCMDVLIH-YPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred --CCcCEEEEhhHHHh-CCHHHHHHHHHHHHHHhCCCEEEE
Confidence 58999987311111 112223444555555666655443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=101.32 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=82.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.++ ...+++++|.++.+++.+++++..+++..+++++.++..++..+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~---------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 118 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG---------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP-- 118 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC---------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC--
Confidence 3568999999999999999998873 13699999999999999999988777777899999998876532
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.. .+..-.....++..+.++|+|||.++
T Consensus 119 -~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 119 -DNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred -CCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEE
Confidence 36899998732 12122235566677778999999876
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=102.64 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=87.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc---
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--- 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--- 142 (694)
+.++|||||||+|..++++|+..+ +.++|+++|.+++.++.|+++++.+|+.++|+++.++..+....
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~---------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~ 188 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLP---------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ 188 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 468999999999999999998754 24689999999999999999999999999999999998764210
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
....++||+|+.+.- .+..+.+.+...++|+|||.++-+..-..+.
T Consensus 189 ~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 189 NGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred cccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence 011358999997532 2223444445556999999998776544433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.9e-09 Score=101.51 Aligned_cols=107 Identities=25% Similarity=0.290 Sum_probs=75.0
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++.|.+.+.++.+|+|+.||.|.+++.+|+.+. ..+|+|+|.||.+++.++++++.|++.++|.++++|.
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~----------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~ 161 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK----------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA 161 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcC----------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH
Confidence 344555678899999999999999999999543 3589999999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
.++.. ...+|-|+.++.... . .++.+...++++||++
T Consensus 162 ~~~~~----~~~~drvim~lp~~~------~-~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 162 REFLP----EGKFDRVIMNLPESS------L-EFLDAALSLLKEGGII 198 (200)
T ss_dssp GG-------TT-EEEEEE--TSSG------G-GGHHHHHHHEEEEEEE
T ss_pred HHhcC----ccccCEEEECChHHH------H-HHHHHHHHHhcCCcEE
Confidence 88753 368999998765432 2 2333444577887765
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=100.41 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+|||+|||+|.+++.+++... ..+|+++|+|+.|++.|+++. . +++++++|+.++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~----------~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~---- 123 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK----------PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES---- 123 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc----
Confidence 357999999999999998887642 258999999999999998752 2 68899999887642
Q ss_pred CCCccEEEEccccccccCCChHHHHHHH----------HHhccCCCCeEEcCceEEEEEEecchhhh
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHA----------HDRLLVENPLTVPCRVTTYGQLVESTFLW 202 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~----------~~~~L~p~G~iiP~~~~~~~~~ve~~~l~ 202 (694)
.++||+|++++....+-.+.....+... +.+++++.+.++-.++..+.+ +++..++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y 189 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYY 189 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eeccccc
Confidence 3589999999866543222222211110 245666666655444433333 5665554
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=105.66 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.+. +|+|+|.|+.|++.|+++++.|++ ++++++.+|..++.. ..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~------------~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~--~~ 237 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM------------QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT--AQ 237 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC------------EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH--hc
Confidence 468999999999999999999764 899999999999999999999999 489999999987642 12
Q ss_pred CCCccEEEEcccc
Q 044245 146 DSRADILVSEILD 158 (694)
Q Consensus 146 ~~~~DlIvse~~~ 158 (694)
.++||+|+.++.-
T Consensus 238 ~~~~D~Vv~dPPr 250 (315)
T PRK03522 238 GEVPDLVLVNPPR 250 (315)
T ss_pred CCCCeEEEECCCC
Confidence 3579999999774
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=98.83 Aligned_cols=106 Identities=25% Similarity=0.294 Sum_probs=79.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ +..+|+++|.++.+++.|+++.. ....+++++.++..+++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~---------~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~- 84 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVG---------PEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFP- 84 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC---------CCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCC-
Confidence 45678999999999999999988763 13689999999999999988733 3345799999988776532
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ .....+...+.++|+|||.++-
T Consensus 85 --~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 85 --DGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred --CCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEE
Confidence 3689999985322111 2245566677789999998863
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-08 Score=101.73 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=83.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... +.++|+|+|.++.+++.++++++.+|+. +|++++.|...+..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~---------~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-- 136 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMK---------NEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-- 136 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcC---------CCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh--
Confidence 45789999999999999999888754 2368999999999999999999999986 79999999876542
Q ss_pred CCCCCccEEEEcccccc--ccC----------CC-------hHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSE--LLG----------EG-------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~----------e~-------~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||.|+.++.-++ .+. +. ....++....++|+|||+++=
T Consensus 137 -~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 137 -AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred -hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1246999999874332 111 00 112355555579999999983
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=99.05 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=76.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc-cc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-GV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-~~ 143 (694)
-++.+|||+.||||.+++.|..+|+ .+|+.||.|+.++..+++|++..+..++++++.+|....-. ..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-----------~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-----------KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-----------CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc
Confidence 3689999999999999999999998 79999999999999999999999998889999999654321 00
Q ss_pred CCCCCccEEEEccccccccCCCh-HHHHHHHHH--hccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGL-IPTLQHAHD--RLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~--~~L~p~G~ii 185 (694)
...++||+|+.+|.+.. .. .+.++..+. .+|+++|.++
T Consensus 110 ~~~~~fDiIflDPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 110 KKGEKFDIIFLDPPYAK----GLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp HCTS-EEEEEE--STTS----CHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred ccCCCceEEEECCCccc----chHHHHHHHHHHHCCCCCCCEEEE
Confidence 12478999999987742 32 354554443 6788888765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=100.23 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.++ ..+++++|.++.+++.+++... +++.++.++..+...+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~----------~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~--- 95 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP----------QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLE--- 95 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC----------CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCC---
Confidence 457999999999999999999875 3579999999999998886543 3788999998877542
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...... ......++..+.++|+|||.++-
T Consensus 96 ~~~fD~vi~~~~l~~---~~~~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 96 DSSFDLIVSNLALQW---CDDLSQALSELARVLKPGGLLAF 133 (240)
T ss_pred CCceeEEEEhhhhhh---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 368999998633221 12355677777889999998873
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-08 Score=97.85 Aligned_cols=103 Identities=17% Similarity=0.004 Sum_probs=76.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEE
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--------------GRNIK 130 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--------------~~~I~ 130 (694)
.++.+|||+|||.|.-+.++|++|. +|+|+|+|+.+++.+.+ ++++ ..+|+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~------------~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH------------RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC------------eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceE
Confidence 4678999999999999999999985 89999999999997633 2222 23689
Q ss_pred EEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 131 VINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.+|..++.. ...++||.|+-..... .+.....+.+...+.++|+|||.++
T Consensus 98 ~~~~D~~~~~~--~~~~~fD~i~D~~~~~-~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 98 IFCGDFFALTA--ADLGPVDAVYDRAALI-ALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred EEEccCCCCCc--ccCCCcCEEEechhhc-cCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999988753 1225799887532222 2334445567778888999999754
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=104.47 Aligned_cols=107 Identities=12% Similarity=0.045 Sum_probs=81.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..++++.+ ..+++++|. +.+++.++++++..|+.++|+++.+|..+...
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFP----------ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCC----------CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC---
Confidence 4568999999999999999999975 468999997 89999999999999999999999999876432
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+|+|+..-+-+ ...+.....++..+.+.|+|||+++-..
T Consensus 214 --~~~D~v~~~~~lh-~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 214 --PEADAVLFCRILY-SANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred --CCCCEEEeEhhhh-cCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2479876521111 1122333456666677999999986443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-08 Score=94.12 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|.+|||+-+|||.+++.|+.+|+ .+++.||.|..++..+++|++..++..+.+++..|...... .+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-----------~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~--~~ 109 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-----------ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK--QL 109 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-----------ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH--hc
Confidence 589999999999999999999998 79999999999999999999999988899999999874421 22
Q ss_pred CC--CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 146 DS--RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 146 ~~--~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
.. .||+|+.+|.+..-+.+.....+.-....+|+|+|.++-...
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 23 499999998775222211111122123478999998875443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=97.37 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=71.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEeccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--MGRNIKVINKRSDELE 140 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l~~~I~vi~~~~~~l~ 140 (694)
...++.+|||||||+|+.|+.+++... ..+|++.|.++ .++.++.|++.|+ ...++.+..-++.+-.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~----------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~ 110 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG----------AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL 110 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-----------SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H
T ss_pred hhcCCceEEEECCccchhHHHHHhccC----------CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc
Confidence 355689999999999999999999932 26999999988 9999999999998 6678888888876521
Q ss_pred cccC-CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCe
Q 044245 141 VGVD-IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183 (694)
Q Consensus 141 ~~~~-l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ 183 (694)
.... .+.+||+|++. ..++.+...+.+...++++|+++|.
T Consensus 111 ~~~~~~~~~~D~Ilas---Dv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 111 DSDLLEPHSFDVILAS---DVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHS-SSBSEEEEE---S--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred cccccccccCCEEEEe---cccchHHHHHHHHHHHHHHhCCCCE
Confidence 0011 12589999872 3344567788899999999999887
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-08 Score=100.60 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=79.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++ ++...++.++.+|..+..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~----------~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~---- 171 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP----------DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPL---- 171 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcC----
Confidence 3568999999999999999999874 3689999999999999999988 444568999999875421
Q ss_pred CCCCccEEEEccccccc-----c------CC---------C---hHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSEL-----L------GE---------G---LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l-----~------~e---------~---~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++||+|++++..... + +| . ....+.....++|+|||.++-
T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 13689999998754211 0 11 1 123344555679999998864
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=97.94 Aligned_cols=102 Identities=25% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.++ ...+++++|.++.+++.++++.. ...+++++.++..++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~---------~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~--- 103 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAP---------DRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE--- 103 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcC---------CCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC---
Confidence 578999999999999999998875 12589999999999999988765 345799999998886532
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.. .+-+......+++.+.++|+|||+++
T Consensus 104 ~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 104 DNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred CCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEE
Confidence 35899998742 12222335567777778999999887
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=94.65 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=85.6
Q ss_pred cCCC-EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 65 TKSC-HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~-~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
.+.. +|||+|||.|.+...+++.|- ..+.+++|.|+.++++|+.+++++++++.|++.+.|+..-.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf----------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~--- 131 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGF----------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD--- 131 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcC----------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---
Confidence 3444 999999999999999999986 35699999999999999999999999988999999887643
Q ss_pred CCCCCccEEEEcc-cccc-ccCCC---hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 144 DIDSRADILVSEI-LDSE-LLGEG---LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 144 ~l~~~~DlIvse~-~~~~-l~~e~---~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+++||+|+--- ++.. |-++. -+.......+++|+|||+++-.++.
T Consensus 132 ~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 132 FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 3557899886421 1111 11122 2234556778899999999866554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=105.32 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=76.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.+++.+++... ..+|+++|.|+.|++.|+++... .+++++.++..++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----------~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~-- 175 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----------AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFP-- 175 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCC--
Confidence 3568999999999999998887643 25899999999999999987542 3678899999887642
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+.||+|++...-. .-...+.++..+.++|+|||+++
T Consensus 176 -~~sFDvVIs~~~L~---~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 176 -TDYADRYVSAGSIE---YWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred -CCceeEEEEcChhh---hCCCHHHHHHHHHHhcCCCcEEE
Confidence 25899999842211 11123456667778999999975
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=104.52 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
-+++++... +++.|||+||| ||||+.|++.| |++|++++- .+.|.+.++++++.|+.+ ..+++-.....
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~Di--Dp~AV~aa~eNa~~N~v~-~~~~~~~~~~~---- 222 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDI--DPQAVEAARENARLNGVE-LLVQAKGFLLL---- 222 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC-CceEEEecC--CHHHHHHHHHHHHHcCCc-hhhhcccccch----
Confidence 456666654 78899999999 99999999997 999999999 889999999999999997 43333322211
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
.....+++|+||+-. |. +.|.- .+-+ +.+.|+|||.++=+
T Consensus 223 ~~~~~~~~DvIVANI--------LA-~vl~~-La~~-~~~~lkpgg~lIlS 262 (300)
T COG2264 223 EVPENGPFDVIVANI--------LA-EVLVE-LAPD-IKRLLKPGGRLILS 262 (300)
T ss_pred hhcccCcccEEEehh--------hH-HHHHH-HHHH-HHHHcCCCceEEEE
Confidence 112236899999975 22 22210 2222 23469999877644
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=97.99 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=87.7
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
..+...+.+. .+.++||+||||+|.-++++|++.+ +.++|+++|.++..++.|+++++..|+.++|+++.
T Consensus 34 g~lL~~l~~~-~~~k~vLEIGt~~GySal~la~~l~---------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 34 GQLLQMLVRL-TRPKRVLEIGTFTGYSALWLAEALP---------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp HHHHHHHHHH-HT-SEEEEESTTTSHHHHHHHHTST---------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred HHHHHHHHHh-cCCceEEEeccccccHHHHHHHhhc---------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 3444444443 3568999999999999999998865 34799999999999999999999999999999999
Q ss_pred cccccccc--ccC-CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 134 KRSDELEV--GVD-IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 134 ~~~~~l~~--~~~-l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
++..+.-. ..+ ..++||+|+.+-- ............++|+|||.++-+..-
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred eccHhhHHHHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 99876421 011 1357999997521 222333344445699999998865443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.5e-08 Score=96.11 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
.-.|...+.+.. ..++||+||++.|.-++++|...+ .++++++||.++++++.|+++.++.|+.++|+++
T Consensus 47 ~g~~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~---------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~ 116 (219)
T COG4122 47 TGALLRLLARLS-GPKRILEIGTAIGYSALWMALALP---------DDGRLTTIERDEERAEIARENLAEAGVDDRIELL 116 (219)
T ss_pred HHHHHHHHHHhc-CCceEEEeecccCHHHHHHHhhCC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE
Confidence 345555555533 578999999999999999998875 3579999999999999999999999999999999
Q ss_pred e-ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEE
Q 044245 133 N-KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYG 193 (694)
Q Consensus 133 ~-~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~ 193 (694)
. ++..+.-.. ...+.||+|+.+- .....+.+++..-++|+|||.++-+.+-..+
T Consensus 117 ~~gdal~~l~~-~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 117 LGGDALDVLSR-LLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred ecCcHHHHHHh-ccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 9 476554321 2457999999641 1223455566666689999999977765554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-08 Score=103.11 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
+.+...|.+.+.++.+|||+|||+|..+..++++..+ ..+|+++|+|+.|++.|++++....-..+|..++
T Consensus 51 ~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~---------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~ 121 (301)
T TIGR03438 51 ERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQ---------PARYVPIDISADALKESAAALAADYPQLEVHGIC 121 (301)
T ss_pred HHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhcc---------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEE
Confidence 4445556666777889999999999999999988631 2589999999999999998877643223688899
Q ss_pred cccccc-ccccCCCCCc---cEEEEcccccc--ccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 134 KRSDEL-EVGVDIDSRA---DILVSEILDSE--LLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 134 ~~~~~l-~~~~~l~~~~---DlIvse~~~~~--l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+|+.+. .. +.++ +.+++ .+++. .+.+.....++..+.+.|+|||.++-
T Consensus 122 gD~~~~~~~----~~~~~~~~~~~~-~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 122 ADFTQPLAL----PPEPAAGRRLGF-FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred Ecccchhhh----hcccccCCeEEE-EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 998763 22 1222 33222 12221 11222344566667779999999874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=118.97 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC---------------CcEEE
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG---------------RNIKV 131 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~---------------~~I~v 131 (694)
+.+|||+|||+|.+++.+++.++ ..+|+|+|+|+.+++.|++|++.|+++ ++|++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~----------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f 188 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL----------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEF 188 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEE
Confidence 56899999999999999999874 368999999999999999999988653 57999
Q ss_pred EeccccccccccCCCCCccEEEEccc
Q 044245 132 INKRSDELEVGVDIDSRADILVSEIL 157 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~ 157 (694)
+++|+.+... ....+||+||||+.
T Consensus 189 ~~sDl~~~~~--~~~~~fDlIVSNPP 212 (1082)
T PLN02672 189 YESDLLGYCR--DNNIELDRIVGCIP 212 (1082)
T ss_pred EECchhhhcc--ccCCceEEEEECCC
Confidence 9999876431 11236999999985
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-08 Score=97.49 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=70.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-- 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-- 141 (694)
+.++.+|||||||+|.++..+++..+ +.++|+|+|.++ | +++. +|+++++|+.+...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~---------~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIG---------DKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC---------CCceEEEEeccc-c----------cCCC-CcEEEecCCCChHHHH
Confidence 56788999999999999999998864 236999999987 2 2333 58999999887531
Q ss_pred ---ccCCCCCccEEEEccccccccCCCh---------HHHHHHHHHhccCCCCeEEc
Q 044245 142 ---GVDIDSRADILVSEILDSELLGEGL---------IPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 142 ---~~~l~~~~DlIvse~~~~~l~~e~~---------l~~l~~~~~~~L~p~G~iiP 186 (694)
.....+++|+|+|++.-.. .+... ...++....++|+|||.++-
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~-~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCcc-CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0011368999999753222 11111 13456667789999998864
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-08 Score=105.56 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=86.2
Q ss_pred HhhCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 45 DMLNDSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
-..|+..+...|..+.... ..++.+|||+|||+|.+++.++..+. +|+|+|.|+.+++.|+++++.|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~------------~v~~vE~~~~av~~a~~N~~~~ 278 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT------------QLTGIEIESEAIACAQQSAQML 278 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC------------eEEEEECCHHHHHHHHHHHHHc
Confidence 4456666555554444332 23568999999999999999997653 8999999999999999999999
Q ss_pred CCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 124 GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 124 gl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
+++ +++++.+++.++.. ...++||+|+.+|... +..+.+.+.+. -++|++++
T Consensus 279 ~~~-~~~~~~~d~~~~~~--~~~~~~D~vi~DPPr~-----G~~~~~l~~l~-~~~p~~iv 330 (374)
T TIGR02085 279 GLD-NLSFAALDSAKFAT--AQMSAPELVLVNPPRR-----GIGKELCDYLS-QMAPKFIL 330 (374)
T ss_pred CCC-cEEEEECCHHHHHH--hcCCCCCEEEECCCCC-----CCcHHHHHHHH-hcCCCeEE
Confidence 986 89999999876532 1224699999998863 33444444444 25665544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-08 Score=99.72 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=74.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++... +.++|||||+++.|.+.+.+.++.. .+|..+.+|.+......
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG---------~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG---------PEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC---------CCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhh
Confidence 56789999999999999999999864 2468999999988765555444322 36888888876421001
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.+.+|+|+++.. ..+....+....+++|+|||.++-
T Consensus 198 ~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 198 MLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred cccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 12357999998752 122333455556779999999875
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-08 Score=104.01 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+..+||||||+|..++.+|+..+ ...++|+|+++.|++.|.+.+..+|+. +|.++++|+..+.. .-.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P----------~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~-~~~ 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP----------NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLE-LLP 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC----------CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhh-hCC
Confidence 357999999999999999999875 468999999999999999999999996 79999999876531 111
Q ss_pred CCCccEEEEccccccccCCC---hHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEG---LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~---~l~~l~~~~~~~L~p~G~iiP 186 (694)
++.+|.|+....+...-... ..+.++....++|+|||.+.-
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 36899998753221110010 235677788889999998753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=96.14 Aligned_cols=120 Identities=21% Similarity=0.124 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 49 DSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 49 D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
|..|.+...+.+... ...+.+|||+|||+|.++..+++.+. +++++|.++.+++.+++++..++..
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~------------~v~~iD~s~~~~~~a~~~~~~~~~~ 93 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA------------NVTGIDASEENIEVAKLHAKKDPLL 93 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC------------eEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 555555555555542 12478999999999999998888764 7999999999999999998887764
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++++...+..++... .+++||+|++.-. +-.......++..+.+.|+|||.++.
T Consensus 94 -~~~~~~~d~~~~~~~--~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 94 -KIEYRCTSVEDLAEK--GAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred -ceEEEeCCHHHhhcC--CCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 688888888776532 2368999988421 11222355677777789999998763
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-08 Score=108.03 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=83.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... +.++|+|+|+++.+++.++++++.+|+. +|+++++|..++..
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~---------~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK---------NTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE-- 315 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--
Confidence 45678999999999999999998752 1369999999999999999999999996 59999999887531
Q ss_pred CCCCCccEEEEccccc--cccC--C--------Ch-------HHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDS--ELLG--E--------GL-------IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~--e--------~~-------l~~l~~~~~~~L~p~G~ii 185 (694)
.++++||+|++++.-+ +.+. . .. ...++....++|+|||+++
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 2336899999986422 1111 0 00 1234555667999999987
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-08 Score=100.56 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC--CCcEEEEecccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM--GRNIKVINKRSDELEV 141 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl--~~~I~vi~~~~~~l~~ 141 (694)
..++||+||||+|.++..+++... ..+|++||+++.+++.|++..... +. ..+++++.+|......
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~----------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS----------VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC----------CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 468999999999999999887632 268999999999999999987642 22 4589999999877532
Q ss_pred ccCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 142 GVDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
...++||+|+++..+.....+. .-..+....++.|+|||+++-+...
T Consensus 146 --~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 146 --ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred --hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 1246899999986543321111 1245666677899999999855443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=105.44 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=68.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.+++.+++.+. +|+|+|.|+.|++.|+++++.|++. +++++.+|+.+.....
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~------------~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAA------------EVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQ 361 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCC------------EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhh
Confidence 34678999999999999999998864 8999999999999999999999986 7999999987642100
Q ss_pred -CCCCCccEEEEccccc
Q 044245 144 -DIDSRADILVSEILDS 159 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~ 159 (694)
...++||+|++++...
T Consensus 362 ~~~~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 362 PWALGGFDKVLLDPPRA 378 (443)
T ss_pred hhhcCCCCEEEECcCCc
Confidence 1125799999998764
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-08 Score=94.12 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=69.8
Q ss_pred HHHHHHHhh---ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDKM---VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~~---~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
.+.+.+.+. ..++.+|||||||+|.++..+++.+. +|+++|+++.+++. .++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~~~g~D~~~~~~~~-----------~~~~~ 64 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF------------EVTGVDISPQMIEK-----------RNVVF 64 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS------------EEEEEESSHHHHHH-----------TTSEE
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC------------EEEEEECCHHHHhh-----------hhhhh
Confidence 344445443 35689999999999999999988764 99999999999877 12222
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..-+..... ..+++||+|++.-+-.++. -...++..+.++|+|||.++
T Consensus 65 ~~~~~~~~~---~~~~~fD~i~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 65 DNFDAQDPP---FPDGSFDLIICNDVLEHLP---DPEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp EEEECHTHH---CHSSSEEEEEEESSGGGSS---HHHHHHHHHHHCEEEEEEEE
T ss_pred hhhhhhhhh---ccccchhhHhhHHHHhhcc---cHHHHHHHHHHhcCCCCEEE
Confidence 222222222 1236899999853332222 36677778888999999876
|
... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.9e-08 Score=106.25 Aligned_cols=119 Identities=20% Similarity=0.126 Sum_probs=87.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|..++.+++... +.++|+|+|.++.+++.++++++.+|+. +|+++++|..++....
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~---------~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMG---------DQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK 319 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhC---------CCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc
Confidence 45689999999999999999988753 2369999999999999999999999996 6999999988764100
Q ss_pred -CCCCCccEEEEcccccc--ccC--CC---------------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 -DIDSRADILVSEILDSE--LLG--EG---------------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~--l~~--e~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||.|+++..-++ .+. .. ....++....++|+|||+++=..++++
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12358999998764322 221 11 023455555679999999975555544
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=91.56 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++++ .+|+++|.++.|++.++++... .++++++++|+.++..+.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~------------~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA------------ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC------------CeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccc
Confidence 3567899999999999999999885 4899999999999999988753 248999999998876422
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.++|.|++++..
T Consensus 76 ---~~~d~vi~n~Py 87 (169)
T smart00650 76 ---LQPYKVVGNLPY 87 (169)
T ss_pred ---cCCCEEEECCCc
Confidence 369999998765
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=99.93 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEecccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----GRNIKVINKRSDELEV 141 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----~~~I~vi~~~~~~l~~ 141 (694)
++.+|||||||+|.+++.+++.|. +|+|+|+|+.|++.|+++.+..+. ..++++...|..++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~------------~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA------------IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--
Confidence 468999999999999999999864 899999999999999999876522 23678888776553
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.-.-.+ +.+.....+...+.+ +.+++.++
T Consensus 210 ----~~~fD~Vv~~~vL~H-~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 210 ----SGKYDTVTCLDVLIH-YPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ----CCCcCEEEEcCEEEe-cCHHHHHHHHHHHHh-hcCCEEEE
Confidence 368999997422111 122222334444433 45666555
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-08 Score=103.85 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=95.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~ 135 (694)
++.+.+.+. |++|||+-|=||.+|+.||+.|+ .+|+.||.|...++.|++|.+.||++ +++.++++|
T Consensus 209 R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA-----------~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D 276 (393)
T COG1092 209 RRALGELAA-GKRVLNLFSYTGGFSVHAALGGA-----------SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD 276 (393)
T ss_pred HHHHhhhcc-CCeEEEecccCcHHHHHHHhcCC-----------CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh
Confidence 445666666 99999999999999999999997 79999999999999999999999985 579999999
Q ss_pred ccccccc-cCCCCCccEEEEccccccccCCC------hHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 136 SDELEVG-VDIDSRADILVSEILDSELLGEG------LIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 136 ~~~l~~~-~~l~~~~DlIvse~~~~~l~~e~------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
..++--. ....++||+||.+|....--... ....+.....++|+|||+++-..++-...
T Consensus 277 vf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 277 VFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred HHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 7665311 11224899999998654221111 12244555567999999999877765543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=104.83 Aligned_cols=116 Identities=15% Similarity=0.136 Sum_probs=86.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|..++.+++... +.++|+|+|.++.+++.+++++++.|+. +|+++.+|..++..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~---------~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~-- 302 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK---------DQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE-- 302 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--
Confidence 45788999999999999999888753 2369999999999999999999999986 69999999887641
Q ss_pred CCCCCccEEEEcccccc--ccCC--C---------------hHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 DIDSRADILVSEILDSE--LLGE--G---------------LIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~e--~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
...++||.|+++..-++ .+.. + ....++....++|+|||.++=..+++
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 22468999998764432 2110 0 01234445557999999987666553
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-08 Score=94.17 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=73.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+||| |.+++.+|+.+...+|+++|. ++.+.+++++.++.+|++ +|+++++..+++.. .+++|+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~--s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~~----~~~fD~ 112 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLES--NHKKVAFLREVKAELGLN--NVEIVNGRAEDFQH----EEQFDV 112 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeC--cHHHHHHHHHHHHHhCCC--CeEEEecchhhccc----cCCccE
Confidence 357899999999 999999888765678999999 666666788888889985 59999998877632 468999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|++..+ . -++ . + + ....++|+|||.++-
T Consensus 113 I~s~~~-~----~~~-~-~---~--~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 113 ITSRAL-A----SLN-V-L---L--ELTLNLLKVGGYFLA 140 (181)
T ss_pred EEehhh-h----CHH-H-H---H--HHHHHhcCCCCEEEE
Confidence 999751 1 111 1 1 1 122346999998883
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=95.92 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=62.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++....+..+++.++.++...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~------------~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------ 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA------------KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES------ 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh------
Confidence 4578999999999999999998864 7999999999999999999888886789999888432
Q ss_pred CCCCccEEEEc
Q 044245 145 IDSRADILVSE 155 (694)
Q Consensus 145 l~~~~DlIvse 155 (694)
..+.||+|++.
T Consensus 124 ~~~~fD~v~~~ 134 (230)
T PRK07580 124 LLGRFDTVVCL 134 (230)
T ss_pred ccCCcCEEEEc
Confidence 13679999873
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=104.80 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=75.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV- 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~- 143 (694)
.++.+|||+|||+|.+++.+++.+ .+|+|+|.|+.|++.|+++++.|++. +++++.+|..+.....
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~------------~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~ 357 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA------------KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQP 357 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC------------CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHH
Confidence 456899999999999999999875 38999999999999999999999985 8999999987642100
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
....+||+|+.++...+ ..+.++..+.+ ++|++++
T Consensus 358 ~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~iv 392 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIV 392 (431)
T ss_pred hcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEE
Confidence 11246999999876532 23444444442 5666544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=104.93 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=86.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||+|..++.+++... +.++|+|+|.|+.+++.++++++.+|+. +|+++.+|..++..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~---------~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~-- 315 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ---------NRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP-- 315 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC---------CCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--
Confidence 35688999999999999998887643 1368999999999999999999999986 79999999887641
Q ss_pred CCCCCccEEEEccccc--cccC----------CCh-------HHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLG----------EGL-------IPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~----------e~~-------l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
+++||.|+.++.-+ +.+. +.. ...++....++|+|||+++=..+++.
T Consensus 316 --~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 316 --EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred --CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 25799999875422 2211 001 12355566679999999987655554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=94.54 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=78.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+++|.++.+++.|++++..++. ++.++..+..++.. .
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~--~ 110 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA------------DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA--E 110 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC------------eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh--h
Confidence 3578999999999999999888764 899999999999999998887766 57788777776531 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++..+ +.+-.-...++..+.++|+|||.++.
T Consensus 111 ~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 111 HPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred cCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEEE
Confidence 2368999987421 11222355667777889999998873
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=98.67 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++..+.. ....|+|+|+|+.|++.|+++. .++.++.++..+++++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~-------~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~--- 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI-------TTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFA--- 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc-------cCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCc---
Confidence 35789999999999999888775310 0137999999999999987642 2578888998887653
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.||+|++.. ... ....+.+.|+|||+++
T Consensus 149 ~~sfD~I~~~~------~~~----~~~e~~rvLkpgG~li 178 (272)
T PRK11088 149 DQSLDAIIRIY------APC----KAEELARVVKPGGIVI 178 (272)
T ss_pred CCceeEEEEec------CCC----CHHHHHhhccCCCEEE
Confidence 26899999731 111 2345567999999987
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=94.07 Aligned_cols=102 Identities=17% Similarity=0.008 Sum_probs=75.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEE
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--------------GRNIK 130 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--------------~~~I~ 130 (694)
.++.+|||+|||.|.-++++|+.|. +|+|+|+|+.+++.+.+ ++++ ..+|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~------------~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH------------EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC------------eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceE
Confidence 4578999999999999999999885 89999999999987642 3333 25799
Q ss_pred EEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 131 VINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
++.+|+.++... ...+||.|+-..+-. .+.....+.+...+.++|+|||+.
T Consensus 101 ~~~~D~~~l~~~--~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 101 IYCGDFFALTAA--DLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred EEECcccCCCcc--cCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeE
Confidence 999999887531 124789988543222 223444566777888899999863
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=104.55 Aligned_cols=116 Identities=15% Similarity=0.030 Sum_probs=85.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++.+. ..+|+|+|.++.+++.++++++.+|+. ++++.+|..++...
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~----------~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~- 308 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP----------QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQW- 308 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC----------CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhh-
Confidence 45789999999999999999998864 259999999999999999999999984 78999998765310
Q ss_pred CCCCCccEEEEcccccc--ccC----------CC-------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDSE--LLG----------EG-------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~----------e~-------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
..+++||.|++++.-+. .+. +. ....++....++|+|||+++=..++++
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 01357999998874331 111 00 112455555679999999984444333
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-07 Score=98.74 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=84.2
Q ss_pred HHHHHHh----hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-----HHcCC-
Q 044245 56 YRLAIDK----MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-----HVNGM- 125 (694)
Q Consensus 56 y~~ai~~----~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-----~~ngl- 125 (694)
|.+.+.. ......+||+||||+|.....+.+... ..+|++||+++.|++.|++.- ....+
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~----------v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~ 205 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET----------VLHVDLVDLDGSMINMARNVPELVSLNKSAFF 205 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC----------CCeEEEEeCCHHHHHHHHhccccchhccccCC
Confidence 5555543 234468999999999998888887643 369999999999999999621 11222
Q ss_pred CCcEEEEeccccccccccCCCCCccEEEEccccccc--cCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 126 GRNIKVINKRSDELEVGVDIDSRADILVSEILDSEL--LGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 126 ~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l--~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+++++.+|..++.. ...++||+|++++.+... ...-.-..+...+++.|+|||+++-+.
T Consensus 206 DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 206 DNRVNVHVCDAKEFLS--SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCceEEEECcHHHHHH--hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 3599999999887532 234689999998654321 111122456677788999999986553
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=99.25 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEe-cccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVIN-KRSDELEVGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~-~~~~~l~~~~ 143 (694)
++.+|||||||+|.+..+++.+.. ..+++|+|+++.+++.|+++++.| ++.++|+++. .+..++..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~----------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i 183 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY----------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGI 183 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC----------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcc
Confidence 357899999999977666665432 368999999999999999999999 8999999864 3333322111
Q ss_pred -CCCCCccEEEEccccc
Q 044245 144 -DIDSRADILVSEILDS 159 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~ 159 (694)
...++||+|+|||..+
T Consensus 184 ~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 184 IHKNERFDATLCNPPFH 200 (321)
T ss_pred cccCCceEEEEeCCCCc
Confidence 1136899999999764
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.9e-08 Score=85.53 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
|++.||||||| |.+++.+|+.....+|+++|. ++.+.+++++.+..++.. ++|+++++.. ..... . .+++|+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~i~~~~~d~-~~~~~-~-~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDI--SPEMLEIARERAAEEGLS-DRITFVQGDA-EFDPD-F-LEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHHHHHTTTT-TTEEEEESCC-HGGTT-T-SSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHHHhcCCC-CCeEEEECcc-ccCcc-c-CCCCCEE
Confidence 46789999999 999999998212467999999 777778888888778887 8999999976 22222 2 4679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-. +.+ ..+++.+... -.-+++.++|+|||+++
T Consensus 75 ~~~~-~~~-~~~~~~~~~~--~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 75 ICSG-FTL-HFLLPLDERR--RVLERIRRLLKPGGRLV 108 (112)
T ss_dssp EECS-GSG-GGCCHHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred EECC-Ccc-ccccchhHHH--HHHHHHHHhcCCCcEEE
Confidence 9987 321 1233311110 11122345799999875
|
... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=98.86 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=80.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++++|||+-|=||.+|+.|++.|+ .+|+.||.|..+++.|++|++.||++ ++++++..|..+.-...
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA-----------~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGA-----------KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTE-----------SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 4589999999999999999998886 78999999999999999999999986 68999999976632111
Q ss_pred CCCCCccEEEEccccccccCCC----hHHHHHHHHHhccCCCCeEEcCce
Q 044245 144 DIDSRADILVSEILDSELLGEG----LIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~----~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
...++||+||.+|.... -+.- ....+.....++|+|||.++-+.+
T Consensus 191 ~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred hcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 12368999999987542 2211 233455555579999999875544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=91.42 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=57.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..+++|+|+|+.|++.|+++. + +++++.++..+ +.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~----------~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~-~~-- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP----------FKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD-PF-- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC-CC--
Confidence 45678999999999999999888732 258999999999999998753 2 46777888766 32
Q ss_pred CCCCCccEEEEccc
Q 044245 144 DIDSRADILVSEIL 157 (694)
Q Consensus 144 ~l~~~~DlIvse~~ 157 (694)
.+++||+|++..+
T Consensus 102 -~~~sfD~V~~~~v 114 (204)
T TIGR03587 102 -KDNFFDLVLTKGV 114 (204)
T ss_pred -CCCCEEEEEECCh
Confidence 2368999998543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=80.00 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=76.5
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+++|+|||+|.++..+++.. ..+++++|.++.+.+.+++....++ ..+++++.++..+... ...++
T Consensus 1 ~ildig~G~G~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGP-----------GARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcc--ccCCc
Confidence 48999999999998888732 3699999999999999986544443 3589999999887642 12368
Q ss_pred ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 149 ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 149 ~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+|+|+++...... ......+.....+.|+++|.++..
T Consensus 67 ~d~i~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999986543321 334556666667789999998754
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=89.37 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=72.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE-EEeccccccccccCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK-VINKRSDELEVGVDID 146 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~-vi~~~~~~l~~~~~l~ 146 (694)
.-||+||||||.-=- |.-+-+..+|+++|.|++|-+.|.+.++.+.-. ++. ++.++.+++.- --+
T Consensus 78 ~~vLEvgcGtG~Nfk-----------fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~--l~d 143 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFK-----------FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQ--LAD 143 (252)
T ss_pred cceEEecccCCCCcc-----------cccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcc--ccc
Confidence 457999999995421 222224579999999999999999999988554 676 89999998861 123
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++|.||+-+.-+. .++... .+...+++|+|||+++
T Consensus 144 ~s~DtVV~TlvLCS--ve~~~k-~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCS--VEDPVK-QLNEVRRLLRPGGRII 179 (252)
T ss_pred CCeeeEEEEEEEec--cCCHHH-HHHHHHHhcCCCcEEE
Confidence 78999998432221 244444 4555677999999876
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-07 Score=102.94 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=85.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... .++|+|+|.++.+++.++++++.+|+..+++++.++.......
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~----------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~- 304 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP----------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW- 304 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC----------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-
Confidence 45689999999999999999998753 3699999999999999999999999874455577776543210
Q ss_pred CCCCCccEEEEccccc--cccCC--C---------------hHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLGE--G---------------LIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~e--~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||.|+++..-+ +.+.. . ....++....++|+|||+++=..+++.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 0135799999875422 23221 1 012455555679999999986666555
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-07 Score=96.52 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCCH----HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH----HcC-------------
Q 044245 66 KSCHVLDIGAGTGL----LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH----VNG------------- 124 (694)
Q Consensus 66 ~~~~VLDiG~GtG~----lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~----~ng------------- 124 (694)
++.+|||+|||||- +++.+++.++.. .....+|+|+|+|+.|++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~-----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKA-----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhc-----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 34699999999995 677777765410 0013589999999999999997531 011
Q ss_pred ---------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 125 ---------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 125 ---------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+.++|++...|..+...+ .++||+|+|..+-.++ .......++..+.+.|+|||.++-.
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~~~---~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAESPP---LGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCCCc---cCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 224788888888775431 3689999984222111 1223445777777899999998754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=98.87 Aligned_cols=107 Identities=20% Similarity=0.176 Sum_probs=84.7
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
.-+.+.+.+|.+|+|+-||-|.+++.+|++|+ .+|+|+|+||.+++++++|++.|++.++|..+++|..
T Consensus 180 ~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~-----------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~r 248 (341)
T COG2520 180 ARVAELVKEGETVLDMFAGVGPFSIPIAKKGR-----------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR 248 (341)
T ss_pred HHHHhhhcCCCEEEEccCCcccchhhhhhcCC-----------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHH
Confidence 33555677799999999999999999999987 4599999999999999999999999988999999999
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++... .+.+|-|+.+.+.+ ..+ +....-..+++||++.
T Consensus 249 ev~~~---~~~aDrIim~~p~~------a~~-fl~~A~~~~k~~g~iH 286 (341)
T COG2520 249 EVAPE---LGVADRIIMGLPKS------AHE-FLPLALELLKDGGIIH 286 (341)
T ss_pred Hhhhc---cccCCEEEeCCCCc------chh-hHHHHHHHhhcCcEEE
Confidence 98642 16799999765442 122 2233334677787763
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=93.92 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc--c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--V 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--~ 143 (694)
+.++||+||+++|.-++++|++.+ +.++|+++|.+++.++.|+++++..|+.++|+++.++..+.... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence 357999999999999999998754 34799999999999999999999999999999999998764211 0
Q ss_pred --CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 144 --DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 144 --~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
...++||+|+.+-- .+.....+ +...++|+|||.++-+..-..+.
T Consensus 150 ~~~~~~~fD~iFiDad-----K~~Y~~y~-~~~l~ll~~GGviv~DNvl~~G~ 196 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD-----KDNYINYH-KRLIDLVKVGGVIGYDNTLWNGS 196 (247)
T ss_pred ccccCCcccEEEecCC-----HHHhHHHH-HHHHHhcCCCeEEEEcCCCCCCc
Confidence 01358999997521 12234444 44446999999998776655544
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=97.24 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=68.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++..++..++++++++|+.+...
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~------------~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK------------KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-- 99 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC------------cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence 55788999999999999999998764 8999999999999999999887766799999999987543
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.++|.|++++.++
T Consensus 100 ---~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 ---PYFDVCVANVPYQ 112 (294)
T ss_pred ---cccCEEEecCCcc
Confidence 3689999987664
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=94.13 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+.+.|||+|+| |+++||+|+--...+|.+||- .+.+.+.|++.++.|+++ ++|+|+++++.++.... ...++|+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEi--q~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~-~~~~fD~I 119 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEI--QEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKAL-VFASFDLI 119 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEe--CHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcc-cccccCEE
Confidence 35689999999 999999998622589999999 788888999999999998 99999999888776532 23468999
Q ss_pred Ecc-ccccC
Q 044245 484 IGE-PYYFG 491 (694)
Q Consensus 484 vsE-~~~~~ 491 (694)
||- |||.-
T Consensus 120 i~NPPyf~~ 128 (248)
T COG4123 120 ICNPPYFKQ 128 (248)
T ss_pred EeCCCCCCC
Confidence 999 57764
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.3e-07 Score=94.63 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=90.8
Q ss_pred HHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CCC-C
Q 044245 55 AYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GMG-R 127 (694)
Q Consensus 55 ~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl~-~ 127 (694)
.|.+.+... ....++||+||||.|.++..+++... ..+|+.||+++.+++.|++..... ++. .
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~----------v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dp 145 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSS----------VEQIDICEIDKMVIDVSKKFFPDLAVGFDDP 145 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCC----------CCeEEEEECCHHHHHHHHHhhhhhccccCCC
Confidence 455655542 24568999999999999999988732 358999999999999999987542 333 4
Q ss_pred cEEEEeccccccccccCC-CCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 128 NIKVINKRSDELEVGVDI-DSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l-~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
|++++.+|..+.-. .. .++||+|+++..+....... .-+.+.+..++.|+|||+++-+....+..
T Consensus 146 Rv~vi~~Da~~~l~--~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 146 RVNLHIGDGVEFLK--NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred ceEEEEChHHHHHh--hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 89999999766431 12 35899999976543221111 13356667778999999998777665543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=90.69 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 044245 51 YRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNI 129 (694)
Q Consensus 51 ~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I 129 (694)
.|++..++.+.+. +.....|.|+|||+|..+-.++++.+ ...|+|+|.|++|++.|++. +. ++
T Consensus 14 eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP----------~A~i~GiDsS~~Mla~Aa~r-----lp-~~ 77 (257)
T COG4106 14 ERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWP----------DAVITGIDSSPAMLAKAAQR-----LP-DA 77 (257)
T ss_pred hccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCC----------CCeEeeccCCHHHHHHHHHh-----CC-CC
Confidence 3455556666664 34468999999999999999999986 57999999999999998653 33 68
Q ss_pred EEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 130 KVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 130 ~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
++..+|..++.. ....|++++|-.-..+- +.. .++..+-..|.|||.+
T Consensus 78 ~f~~aDl~~w~p----~~~~dllfaNAvlqWlp--dH~-~ll~rL~~~L~Pgg~L 125 (257)
T COG4106 78 TFEEADLRTWKP----EQPTDLLFANAVLQWLP--DHP-ELLPRLVSQLAPGGVL 125 (257)
T ss_pred ceecccHhhcCC----CCccchhhhhhhhhhcc--ccH-HHHHHHHHhhCCCceE
Confidence 899999998863 25799999975443331 122 2333333478999976
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-07 Score=91.38 Aligned_cols=103 Identities=17% Similarity=0.048 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+|++|||||||.|..+..++++|+ ..|+|+|.+.......+...+..|...++..+.-.+++++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-----------~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~---- 179 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-----------KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN---- 179 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-----------CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----
Confidence 489999999999999999999998 78999999887765555444444544455555555666652
Q ss_pred CCCccEEEEccccccccC-CChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+.||+|+|- ++++ ....-..+..++..|++||.+|-.
T Consensus 180 ~~~FDtVF~M----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 180 LGAFDTVFSM----GVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCCcCEEEEe----eehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3689999983 2333 222334455566789999988744
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=91.39 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |++++.+|+.+...+|+++|- ++.|.+.+++.++.|+++ + ++++.++.-+ .++.++.|+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi--~~~a~~~a~~n~~~n~~~-~-v~~~~~d~~~----~~~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDI--NPDALELAKRNAERNGLE-N-VEVVQSDLFE----ALPDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEES--BHHHHHHHHHHHHHTTCT-T-EEEEESSTTT----TCCTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHHHhcCcc-c-cccccccccc----cccccceeEE
Confidence 45689999999 999999999863448999999 888889999999999997 5 9999875321 2335899999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
||-|
T Consensus 103 v~NP 106 (170)
T PF05175_consen 103 VSNP 106 (170)
T ss_dssp EE--
T ss_pred EEcc
Confidence 9996
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.5e-07 Score=97.21 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhhcc-CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 48 NDSYRNRAYRLAIDKMVT-KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~~~-~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
|-......|..+.. .+. .+.+|||++||+|.+++.+++.. .+|+++|.++.|++.|++|++.|++.
T Consensus 188 N~~~~e~l~~~v~~-~~~~~~~~vLDl~~G~G~~sl~la~~~------------~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 188 NAAVNEKMLEWALD-ATKGSKGDLLELYCGNGNFTLALARNF------------RRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred CHHHHHHHHHHHHH-HhhcCCCeEEEEeccccHHHHHHHhhC------------CEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 44443334433333 332 23579999999999999888864 48999999999999999999999996
Q ss_pred CcEEEEeccccccccc-cC-----------C-CCCccEEEEccccc
Q 044245 127 RNIKVINKRSDELEVG-VD-----------I-DSRADILVSEILDS 159 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~-~~-----------l-~~~~DlIvse~~~~ 159 (694)
+++++.+|..+.... .. . ..+||+|+.+|...
T Consensus 255 -~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 255 -NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred -cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC
Confidence 899999998764210 00 0 12589999998863
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-07 Score=103.66 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=81.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-----HcCCC-CcEEEEeccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-----VNGMG-RNIKVINKRSDE 138 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-----~ngl~-~~I~vi~~~~~~ 138 (694)
.+.++|||||||+|.++..+++... ..+|+++|+|+++++.|+++.. .+.++ ++++++.+|..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~----------v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD----------VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----------cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 4568999999999999999887642 2599999999999999998421 11233 489999999887
Q ss_pred cccccCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 139 LEVGVDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
... ..+++||+|++++.+..... ...-..+.+..++.|+|||+++-+...
T Consensus 366 ~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 366 WLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred HHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 532 23468999999865432111 112234666677899999999876543
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-07 Score=98.36 Aligned_cols=100 Identities=27% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||++||+|.+++.+++..+ ..+|+++|.|+.+++.+++|++.|++. +++++++|...+.. . .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~----------~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~--~-~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG----------VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLH--E-E 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHh--h-c
Confidence 46899999999999999988653 258999999999999999999999996 67899999876532 1 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||+|+.+++|. . .+.+..++. .++++|++.-.
T Consensus 124 ~~fD~V~lDP~Gs---~---~~~l~~al~-~~~~~gilyvS 157 (382)
T PRK04338 124 RKFDVVDIDPFGS---P---APFLDSAIR-SVKRGGLLCVT 157 (382)
T ss_pred CCCCEEEECCCCC---c---HHHHHHHHH-HhcCCCEEEEE
Confidence 5799999998642 1 233333344 57888887654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=88.89 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++..|+.....+|+++|. ++.+.+.+++.++.|+++ + |++++++.+++.. .++.|+|
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~--s~~~l~~A~~~~~~~~l~-~-i~~~~~d~~~~~~----~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDS--LGKKIAFLREVAAELGLK-N-VTVVHGRAEEFGQ----EEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeC--cHHHHHHHHHHHHHcCCC-C-EEEEeccHhhCCC----CCCccEE
Confidence 36789999999 999998877533679999999 776677889999999996 5 9999998876543 3689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
++..+ .++.. |+.. ..++|+|||.++.
T Consensus 117 ~~~~~-------~~~~~--~l~~---~~~~LkpGG~lv~ 143 (187)
T PRK00107 117 TSRAV-------ASLSD--LVEL---CLPLLKPGGRFLA 143 (187)
T ss_pred EEccc-------cCHHH--HHHH---HHHhcCCCeEEEE
Confidence 98642 11111 1122 2236999998773
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-07 Score=83.33 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
...|||||||||..+-++++... +.....+.|+||.+++..++.++.|+. ++.++..|...-- .+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~---------~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l----~~ 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG---------PQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGL----RN 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC---------CCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhh----cc
Confidence 57899999999999999988765 356789999999999999999999987 5888888865422 23
Q ss_pred CCccEEEEccc
Q 044245 147 SRADILVSEIL 157 (694)
Q Consensus 147 ~~~DlIvse~~ 157 (694)
+++|+++.++.
T Consensus 109 ~~VDvLvfNPP 119 (209)
T KOG3191|consen 109 ESVDVLVFNPP 119 (209)
T ss_pred CCccEEEECCC
Confidence 79999998874
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=88.00 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=68.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.|+.+ +. .++++++++..+....
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~---------~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVG---------GKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhC---------CCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHH
Confidence 56789999999999999999888764 23589999999854 12 3578888887653210
Q ss_pred ----cCCCCCccEEEEcccccc-cc-CCC------hHHHHHHHHHhccCCCCeEEc
Q 044245 143 ----VDIDSRADILVSEILDSE-LL-GEG------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ----~~l~~~~DlIvse~~~~~-l~-~e~------~l~~l~~~~~~~L~p~G~iiP 186 (694)
....+++|+|+++....+ .. ... ..+.++....++|+|||+++-
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 001257999998642110 00 001 124555666779999998774
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-07 Score=93.83 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=64.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.++.|++.++++++. . ++++++++|..++..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~------------~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-- 89 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAK------------KVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-- 89 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCC------------EEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc--
Confidence 45688999999999999999999853 899999999999999987754 2 489999999987653
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.++|.|++++.++
T Consensus 90 ---~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 ---PEFNKVVSNLPYQ 102 (258)
T ss_pred ---hhceEEEEcCCcc
Confidence 3589999997653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=83.91 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
|.+|||+|+| |.+++.+++.| +.+|+++|- ++.+.+++++.+..+++. ++++++.++..++. ..+..+++|+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi--~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~-~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDI--DPEAVELARRNLPRNGLD-DRVEVIVGDARDLP-EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEES--SHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEE--CHHHHHHHHHHHHHccCC-ceEEEEECchhhch-hhccCceeEEEE
Confidence 3479999999 99999999997 899999999 888888999999999998 89999999877665 124468999999
Q ss_pred ccccccCCcc---ccCcchhhHHHHHhhcccccCCCceE
Q 044245 485 GEPYYFGNDG---MLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 485 sE~~~~~~e~---~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
+-|-|..... ... . +. ...-.+..++|+|||.+
T Consensus 76 ~npP~~~~~~~~~~~~-~-~~-~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALR-R-LY-SRFLEAAARLLKPGGVL 111 (117)
T ss_dssp E--STTSBTT----GG-C-HH-HHHHHHHHHHEEEEEEE
T ss_pred ECCCCccccccchhhH-H-HH-HHHHHHHHHHcCCCeEE
Confidence 9965442111 111 1 11 01112224579999965
|
... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-07 Score=90.63 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++...... +..+|+|+|.|+.|++.|++....++ +++...+...+.. .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g------~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~---~ 126 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG------LRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA---E 126 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC------CCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc---c
Confidence 467999999999999988886532000 12589999999999999988765443 4455555555442 2
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLV 179 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~ 179 (694)
+++||+|++...-.++ .+..+..++....++++
T Consensus 127 ~~~fD~V~~~~~lhh~-~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 127 GERFDVVTSNHFLHHL-DDAEVVRLLADSAALAR 159 (232)
T ss_pred CCCccEEEECCeeecC-ChHHHHHHHHHHHHhcC
Confidence 3689999996433222 22224455566666776
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-07 Score=96.06 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+++.+.. .+++.|||+||| |+|++.+++.| +++|++++. ++.+.+.+++.++.|+++ ++++++.+....
T Consensus 150 l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDi--d~~al~~a~~n~~~n~~~-~~~~~~~~~~~~--- 220 (288)
T TIGR00406 150 LEWLEDLD--LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDI--DPLAVESARKNAELNQVS-DRLQVKLIYLEQ--- 220 (288)
T ss_pred HHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHHcCCC-cceEEEeccccc---
Confidence 34555443 257899999999 99999999996 899999999 787888899999999997 888887764211
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
...+++|+||+.... +.+.- +.. .+.+.|+|||.++
T Consensus 221 --~~~~~fDlVvan~~~---------~~l~~-ll~-~~~~~LkpgG~li 256 (288)
T TIGR00406 221 --PIEGKADVIVANILA---------EVIKE-LYP-QFSRLVKPGGWLI 256 (288)
T ss_pred --ccCCCceEEEEecCH---------HHHHH-HHH-HHHHHcCCCcEEE
Confidence 124689999987521 11210 111 2234799999875
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=94.76 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-C-
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV-D- 144 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~-~- 144 (694)
+.+|||+|||+|.+++.+++.. .+|+|+|.+++|++.|++|++.|++. +++++.++..++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~------------~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~ 264 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF------------RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGV 264 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC------------CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhc
Confidence 3579999999999999988875 38999999999999999999999996 7999999987743210 0
Q ss_pred --C---------CCCccEEEEccccccccCCChHHHHHHHH
Q 044245 145 --I---------DSRADILVSEILDSELLGEGLIPTLQHAH 174 (694)
Q Consensus 145 --l---------~~~~DlIvse~~~~~l~~e~~l~~l~~~~ 174 (694)
+ ..++|+|+.+|.-. ++.+.+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l 300 (353)
T TIGR02143 265 REFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLV 300 (353)
T ss_pred cccccccccccccCCCCEEEECCCCC-----CCcHHHHHHH
Confidence 0 12489999998753 3344444444
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=85.83 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=75.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++..|||--||+|.+.+.++..+..... .......+++|+|+++.+++.|++|++..|+.+.|.+.+.|..+++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~-- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPP-LNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL-- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTST-TTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG--
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCccc-ccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc--
Confidence 456889999999999999999988862100 00000224899999999999999999999999999999999999873
Q ss_pred CCCCCccEEEEccccccccCC-----ChHHHHHHHHHhccCC
Q 044245 144 DIDSRADILVSEILDSELLGE-----GLIPTLQHAHDRLLVE 180 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e-----~~l~~l~~~~~~~L~p 180 (694)
..+.+|.||+|+....-++. .....+...+.+.|++
T Consensus 103 -~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 103 -PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred -ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 23689999999866433331 2233455666667776
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=90.65 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~~ 142 (694)
.+++||+||||+|.++..+++... ..+|+++|+++.+++.|++.....+ + ..+++++.+|..+...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~----------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~- 140 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS----------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA- 140 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC----------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH-
Confidence 357999999999999888887652 2589999999999999999875432 2 2478888888765421
Q ss_pred cCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 143 VDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+++||+|+++........+. ....+.+.+++.|+|||+++-....
T Consensus 141 -~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 141 -DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred -hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 1246899999976532211122 1345566677899999999876443
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=86.07 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=77.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC--Ccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ--QKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~--~~~vD 481 (694)
+++.|||+++| |.+++.|++.| |++|+++|. ++.+.++++++++.|+++ ++++++++++.+.-. .+. ....|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~--~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~-~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEED--DRKANQTLKENLALLKSG-EQAEVVRNSALRALK-FLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeC--CHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHH-HhhccCCCce
Confidence 57899999999 99999999996 899999999 778888899999999997 789999998744311 121 12479
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|+.-|.|.. ...+ ..+.. ... ..||+++|.++
T Consensus 124 vv~~DPPy~~--~~~~-~~l~~-l~~---~~~l~~~~iiv 156 (189)
T TIGR00095 124 VIYLDPPFFN--GALQ-ALLEL-CEN---NWILEDTVLIV 156 (189)
T ss_pred EEEECcCCCC--CcHH-HHHHH-HHH---CCCCCCCeEEE
Confidence 9999987762 3332 22211 111 24788888655
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-07 Score=91.93 Aligned_cols=126 Identities=18% Similarity=0.106 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 48 NDSYRNRAYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+...+++.|..++.+. +.+|.+|||-++|-|..++.++++|+ .+|+.+|.+++.+++|+-|-=..
T Consensus 112 hrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-----------~~VitvEkdp~VLeLa~lNPwSr 180 (287)
T COG2521 112 HRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA-----------IHVITVEKDPNVLELAKLNPWSR 180 (287)
T ss_pred ecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCC-----------cEEEEEeeCCCeEEeeccCCCCc
Confidence 3344566778888774 34689999999999999999999997 79999999999999887542222
Q ss_pred CC-CCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 124 GM-GRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 124 gl-~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++ +.+|+++.||+.++-- +--++.||+|+.++.-..+-+|-.-..+-..+.|.|+|||.++
T Consensus 181 ~l~~~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 181 ELFEIAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred cccccccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 22 2368999999887642 1123679999999977666676666677777888999999987
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-06 Score=94.89 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 48 NDSYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
|-..--..|..++.-+ ..++.+|||+-||.|.+++.+|+.. .+|+|+|+++++++.|++|++.||+.
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~------------~~V~gvEi~~~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV------------KKVHGVEISPEAVEAAQENAAANGID 341 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC------------CEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 4444333444444443 3356899999999999999999775 49999999999999999999999997
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHH
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~ 175 (694)
|++++.++.+++........++|.||.+|.-.++ -+.+.+.+.
T Consensus 342 -N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~ 384 (432)
T COG2265 342 -NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLA 384 (432)
T ss_pred -cEEEEeCCHHHHhhhccccCCCCEEEECCCCCCC-----CHHHHHHHH
Confidence 5999999999876422223578999999877543 444555444
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=86.06 Aligned_cols=77 Identities=23% Similarity=0.198 Sum_probs=56.8
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
.+.+.+.++.+|||||||+|.++..+++... ..++++|.++.|++.|++ + +++++.++..+
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~-----------~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~ 66 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQ-----------VRGYGIEIDQDGVLACVA----R----GVNVIQGDLDE 66 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccC-----------CcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhh
Confidence 3444566788999999999999988876643 478999999999988764 2 36677788765
Q ss_pred -cccccCCCCCccEEEEcc
Q 044245 139 -LEVGVDIDSRADILVSEI 156 (694)
Q Consensus 139 -l~~~~~l~~~~DlIvse~ 156 (694)
+.. ..+++||+|++..
T Consensus 67 ~l~~--~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 67 GLEA--FPDKSFDYVILSQ 83 (194)
T ss_pred cccc--cCCCCcCEEEEhh
Confidence 221 1136899999863
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=91.80 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=62.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+|+|.++.|++.++++... ++++++++|..++..+.
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~------------~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA------------KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC------------cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 45678999999999999999999864 899999999999999876532 48999999998876421
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
. ..+.||+|+.+
T Consensus 104 -~--~~~~vv~NlPY 115 (272)
T PRK00274 104 -L--QPLKVVANLPY 115 (272)
T ss_pred -c--CcceEEEeCCc
Confidence 1 15899998765
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=89.95 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |+|++.+++.| +.+|++++. ++.+.+.+++.++.|++. +++++..+. .++|+|
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDi--s~~~l~~A~~n~~~~~~~-~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDI--DPQAVEAARENAELNGVE-LNVYLPQGD-----------LKADVI 183 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHHcCCC-ceEEEccCC-----------CCcCEE
Confidence 57899999999 99999999986 788999999 787778889999999996 677765541 168999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-.. . +.+.- +. ..+.+.|+|||.++
T Consensus 184 vani~--------~-~~~~~-l~-~~~~~~LkpgG~li 210 (250)
T PRK00517 184 VANIL--------A-NPLLE-LA-PDLARLLKPGGRLI 210 (250)
T ss_pred EEcCc--------H-HHHHH-HH-HHHHHhcCCCcEEE
Confidence 87541 1 11110 11 12234699999877
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=86.69 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=75.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+.++.|||+||| |+||--.|+.| ..|++++. ++.+-++|+.-+..||+. |+-.+..+|++... +++.||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~--se~~I~~Ak~ha~e~gv~---i~y~~~~~edl~~~---~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDA--SEKPIEVAKLHALESGVN---IDYRQATVEDLASA---GGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecC--ChHHHHHHHHhhhhcccc---ccchhhhHHHHHhc---CCCccE
Confidence 578899999999 99999999997 68999999 666667888888888884 66677777777642 379999
Q ss_pred EEc-cccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 483 LIG-EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 483 ivs-E~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|+| |. + |-+-.-++ +.|+. .+++||||.++=+...
T Consensus 128 V~cmEV--l--EHv~dp~~----~~~~c-~~lvkP~G~lf~STin 163 (243)
T COG2227 128 VTCMEV--L--EHVPDPES----FLRAC-AKLVKPGGILFLSTIN 163 (243)
T ss_pred EEEhhH--H--HccCCHHH----HHHHH-HHHcCCCcEEEEeccc
Confidence 999 53 1 11111011 23332 2369999999877665
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=88.34 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=78.9
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+-..+.+|+.||||||| |-|++.||+.= -.+|+++.- |+-..+.+++-++.-|++ ++|+|+-.+-.+++
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTl--S~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~~--- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTL--SEEQLAYAEKRIAARGLE-DNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeC--CHHHHHHHHHHHHHcCCC-cccEEEeccccccc---
Confidence 45555666789999999999 99999999872 268999988 666667788888889998 89999776544443
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+++|-|||=.+|... |.=.|..+ +.+ ..++|+|||+++=+
T Consensus 136 ---e~fDrIvSvgmfEhv-g~~~~~~f---f~~--~~~~L~~~G~~llh 175 (283)
T COG2230 136 ---EPFDRIVSVGMFEHV-GKENYDDF---FKK--VYALLKPGGRMLLH 175 (283)
T ss_pred ---cccceeeehhhHHHh-CcccHHHH---HHH--HHhhcCCCceEEEE
Confidence 569999996655421 22112211 222 23479999988644
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=84.09 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=60.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++.+|||+|+| |.+++.++..| |.+|+++|. ++.+.+.++++++.||++ +++++.+++.+.-. .. .++.|+|
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~--~~~a~~~a~~Nl~~~~~~--~v~~~~~D~~~~l~-~~-~~~fDlV 125 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEM--DRAVAQQLIKNLATLKAG--NARVVNTNALSFLA-QP-GTPHNVV 125 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHHHHHhCCC--cEEEEEchHHHHHh-hc-CCCceEE
Confidence 56789999999 99999765555 789999999 788888899999999984 79999987654321 11 2468999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++.|
T Consensus 126 ~~DP 129 (199)
T PRK10909 126 FVDP 129 (199)
T ss_pred EECC
Confidence 9995
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=84.76 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=73.5
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..|||+|+| |.+++.+|+. |+..+|+++|. ++.+.+.+++.++.||+. ++++++.++..+.- ..+ ..
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~--~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l-~~~-~~ 110 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDK--DEKAINLTRRNAEKFGVL-NNIVLIKGEAPEIL-FTI-NE 110 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC-CCeEEEEechhhhH-hhc-CC
Confidence 344577899999999 9999999875 43579999999 777777889899999976 78999988765431 112 25
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++|.|++.... ..+. ..| . ...+.|+|||+++
T Consensus 111 ~~D~V~~~~~~----~~~~-~~l---~---~~~~~LkpgG~lv 142 (198)
T PRK00377 111 KFDRIFIGGGS----EKLK-EII---S---ASWEIIKKGGRIV 142 (198)
T ss_pred CCCEEEECCCc----ccHH-HHH---H---HHHHHcCCCcEEE
Confidence 79999985411 1111 222 1 1123589999877
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=85.11 Aligned_cols=108 Identities=15% Similarity=-0.046 Sum_probs=78.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-------HHcC----CCCcEEEEe
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-------HVNG----MGRNIKVIN 133 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-------~~ng----l~~~I~vi~ 133 (694)
.++.+||+.|||.|.-..++|+.|. +|+|+|.|+.+++.+.+.. +.+. -..+|++++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~------------~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV------------KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC------------cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE
Confidence 3568999999999999999999985 8999999999998875521 0000 124799999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|..++.......++||+|.--..- +.+...+.+.....+.++|+|||.++
T Consensus 110 gD~f~l~~~~~~~~~fD~VyDra~~-~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIWYDRGAY-IALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred ccCcCCCccccccCCcCeeeeehhH-hcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 9999885322223589997642111 23355566677777788999999864
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=82.62 Aligned_cols=77 Identities=22% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.|...+.+|.+|||+|||.|.|...+.+.- ..+.+|+|++++.+..+.+ +| +.++++|++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----------~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-----------QVDGYGVEIDPDNVAACVA----RG----VSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHH----cC----CCEEECCHH
Confidence 4677788999999999999998887777643 3689999999987655543 45 458999987
Q ss_pred ccccccCCCCCccEEEE
Q 044245 138 ELEVGVDIDSRADILVS 154 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvs 154 (694)
+-- ..-.++.||.||.
T Consensus 66 ~gL-~~f~d~sFD~VIl 81 (193)
T PF07021_consen 66 EGL-ADFPDQSFDYVIL 81 (193)
T ss_pred HhH-hhCCCCCccEEeh
Confidence 622 1122368998875
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=89.06 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+|..||||||| |-+++.+|+. | + +|+++.- |+...+++++-++..|++ ++|+|...+-.+++ .+.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~-~v~gitl--S~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~~~~------~~f 128 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG-C-HVTGITL--SEEQAEYARERIREAGLE-DRVEVRLQDYRDLP------GKF 128 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES---HHHHHHHHHHHHCSTSS-STEEEEES-GGG---------S-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-c-EEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEEeeccccC------CCC
Confidence 4578899999999 8888888887 6 4 7999988 676677888889999998 99999887644432 489
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|.|||=..+. .|-+ .++.-++ .+..++|+|||+++=
T Consensus 129 D~IvSi~~~E---hvg~-~~~~~~f--~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 129 DRIVSIEMFE---HVGR-KNYPAFF--RKISRLLKPGGRLVL 164 (273)
T ss_dssp SEEEEESEGG---GTCG-GGHHHHH--HHHHHHSETTEEEEE
T ss_pred CEEEEEechh---hcCh-hHHHHHH--HHHHHhcCCCcEEEE
Confidence 9999954333 3333 3332112 233458999998653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.2e-06 Score=88.63 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=84.6
Q ss_pred HHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CC
Q 044245 55 AYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GR 127 (694)
Q Consensus 55 ~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~ 127 (694)
.|.+.+... ....++||.||+|.|.++..+.+... ..+|++||+++.+++.|++....++ + ..
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~----------~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKT----------VEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCC----------CCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 355555432 12357999999999999998888643 3589999999999999999876432 2 35
Q ss_pred cEEEEeccccccccccCCCCCccEEEEccccccccC--C-ChHHHHHH-HHHhccCCCCeEEcC
Q 044245 128 NIKVINKRSDELEVGVDIDSRADILVSEILDSELLG--E-GLIPTLQH-AHDRLLVENPLTVPC 187 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~--e-~~l~~l~~-~~~~~L~p~G~iiP~ 187 (694)
+++++.+|....-. ...++||+|+.+..+....+ . -.-..+.. ..++.|+|||+++-+
T Consensus 158 rv~v~~~Da~~~L~--~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 158 RLELIINDARAELE--KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ceEEEEChhHHHHh--hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999877542 23468999999864421101 0 11223444 667899999998654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=84.72 Aligned_cols=111 Identities=5% Similarity=-0.069 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|.+.+...++..|||+||| |.++.++|+.| .+|++++. ++.+.+.+++.++.+|++ +++........
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~--s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~-- 89 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDH--NPASIASVLDMKARENLP---LRTDAYDINAA-- 89 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEEC--CHHHHHHHHHHHHHhCCC---ceeEeccchhc--
Confidence 4455566655566789999999 99999999986 48999999 676667777777778774 45444432222
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.+ ++++|+|++...+.. ++-..+.- +. ..+.++|+|||.++
T Consensus 90 -~~-~~~fD~I~~~~~~~~----~~~~~~~~-~l-~~~~~~LkpgG~ll 130 (195)
T TIGR00477 90 -AL-NEDYDFIFSTVVFMF----LQAGRVPE-II-ANMQAHTRPGGYNL 130 (195)
T ss_pred -cc-cCCCCEEEEeccccc----CCHHHHHH-HH-HHHHHHhCCCcEEE
Confidence 23 357999999864331 11011110 11 22234799999744
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=82.21 Aligned_cols=77 Identities=23% Similarity=0.162 Sum_probs=58.0
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|+|+.||.|.-++.+|+.+. +|+|||+++..++.|+.|++..|..++|+++++|+.++........
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~------------~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~ 68 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD------------RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNK 68 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----
T ss_pred CEEEEeccCcCHHHHHHHHhCC------------eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccc
Confidence 3799999999999999999975 9999999999999999999999999999999999988642111111
Q ss_pred CccEEEEcc
Q 044245 148 RADILVSEI 156 (694)
Q Consensus 148 ~~DlIvse~ 156 (694)
.+|+|+..|
T Consensus 69 ~~D~vFlSP 77 (163)
T PF09445_consen 69 IFDVVFLSP 77 (163)
T ss_dssp --SEEEE--
T ss_pred cccEEEECC
Confidence 289998765
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-06 Score=90.26 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||+.||+|..++.+++.++ +..+|+++|+|+.+++.+++|++.|++. +++++++|...+.. ...+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~---------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~--~~~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIE---------GVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLR--YRNR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHH--HhCC
Confidence 5899999999999999999832 1268999999999999999999999986 79999999887642 1235
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+||+|..+++++ ...+++..-+.++++|.+.-
T Consensus 114 ~fDvIdlDPfGs-------~~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 114 KFHVIDIDPFGT-------PAPFVDSAIQASAERGLLLV 145 (374)
T ss_pred CCCEEEeCCCCC-------cHHHHHHHHHhcccCCEEEE
Confidence 799999988652 11233333346778887653
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=81.52 Aligned_cols=102 Identities=26% Similarity=0.324 Sum_probs=82.5
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+++|||+|.|.-++.+|-..+ ..+++.+|.+..-+...+..++.-|++ +++++++++++. ...++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p----------~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~----~~~~~ 115 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP----------DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEP----EYRES 115 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T----------TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHT----TTTT-
T ss_pred eEEecCCCCCChhHHHHHhCC----------CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeeccc----ccCCC
Confidence 899999999999999998875 578999999999999999999999997 899999999981 23478
Q ss_pred ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 149 ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 149 ~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
||+|++--+.. ++.+......+|++||.++...+.-+
T Consensus 116 fd~v~aRAv~~-------l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 116 FDVVTARAVAP-------LDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp EEEEEEESSSS-------HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred ccEEEeehhcC-------HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 99999965542 67778888889999999887766543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.2e-06 Score=81.88 Aligned_cols=108 Identities=7% Similarity=-0.028 Sum_probs=72.0
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.....+++.|||+||| |.+++..|+.| .+|+++|. ++.+.+.+++.++.+++. +|+++.....++. +
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~--S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~---~ 92 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDK--NPMSIANLERIKAAENLD--NLHTAVVDLNNLT---F 92 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeC--CHHHHHHHHHHHHHcCCC--cceEEecChhhCC---c
Confidence 3344444466789999999 99999999985 48999999 777777788888888885 4777766544432 2
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++++|+|++-..+. .++-+.+. ..-.++.++|+|||.+
T Consensus 93 -~~~fD~I~~~~~~~----~~~~~~~~--~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 93 -DGEYDFILSTVVLM----FLEAKTIP--GLIANMQRCTKPGGYN 130 (197)
T ss_pred -CCCcCEEEEecchh----hCCHHHHH--HHHHHHHHHcCCCcEE
Confidence 35799999875322 12201111 1122334579999974
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.1e-06 Score=88.35 Aligned_cols=101 Identities=17% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+++..||||||| |.++...|+.| .+|+++|. ++.+.+.+++.++.+++. ++|+++.+..+++.. ..++.|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~--s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~---~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG--ATVTGVDA--VDKNVKIARLHADMDPVT-STIEYLCTTAEKLAD---EGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeC--CHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhh---ccCCCCE
Confidence 456789999999 99999888885 48999999 666666777666666665 689999998776643 2468999
Q ss_pred EEcc-ccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGE-PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE-~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++- .+.. +-+ .-.| -..+.++|||||.++
T Consensus 202 Vi~~~vLeH----v~d--~~~~---L~~l~r~LkPGG~li 232 (322)
T PLN02396 202 VLSLEVIEH----VAN--PAEF---CKSLSALTIPNGATV 232 (322)
T ss_pred EEEhhHHHh----cCC--HHHH---HHHHHHHcCCCcEEE
Confidence 9983 2111 111 1111 112334799999776
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=85.08 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=64.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
..++|+|||+|..+..+|... .+|+|+|.|+.|++.|++.-...-..-..+....+..++..+ ++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~------------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~---e~ 99 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY------------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG---EE 99 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh------------hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC---Cc
Confidence 489999999998888888875 489999999999999887543222211233333333333322 47
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCC-eE
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENP-LT 184 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G-~i 184 (694)
++|+|++.- .++=-.++.+.....|+|+++| ++
T Consensus 100 SVDlI~~Aq----a~HWFdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 100 SVDLITAAQ----AVHWFDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ceeeehhhh----hHHhhchHHHHHHHHHHcCCCCCEE
Confidence 999998731 1111126677777788999877 44
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-06 Score=79.07 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=76.2
Q ss_pred CCCcEEEecCC-chHHHHHH-HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVA-RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA-~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++..|||+||| |.++...+ +.+...+|+.+|- ++.+.+.+++.++.+++. ++++++++.+++... ++ +++|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~--s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~~-~~-~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDI--SEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQE-LE-EKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEES--SHHHHHHHHHHHHHTTST--TEEEEESBTTCGCGC-SS-TTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEEC--cHHHHHHhhccccccccc--ccceEEeehhccccc-cC-CCeeE
Confidence 46789999999 98888888 5543578999999 777778889999999994 899999988876532 33 78999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|++-..+.. +-. .. ..-.++.++|+++|+++-....
T Consensus 77 I~~~~~l~~---~~~---~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHH---FPD---PE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGG---TSH---HH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhh---ccC---HH--HHHHHHHHHcCCCcEEEEEECC
Confidence 999853321 111 10 1111233469999987755444
|
... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-06 Score=80.85 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|++|||+|+|+|+.++.++++|+ ..|++.|+.+...+.++.|+++||. .|.++..+.-. .
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA-----------~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g------~ 139 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA-----------AEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG------S 139 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh-----------HHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC------C
Confidence 379999999999999999999998 7899999999999999999999997 48887766543 2
Q ss_pred CCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~ii 185 (694)
+..+|+++. .-++++. .-..++...+++...|..++
T Consensus 140 ~~~~Dl~La----gDlfy~~~~a~~l~~~~~~l~~~g~~vl 176 (218)
T COG3897 140 PPAFDLLLA----GDLFYNHTEADRLIPWKDRLAEAGAAVL 176 (218)
T ss_pred CcceeEEEe----eceecCchHHHHHHHHHHHHHhCCCEEE
Confidence 368999876 2233333 33445554444444444443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-06 Score=83.63 Aligned_cols=79 Identities=24% Similarity=0.212 Sum_probs=68.2
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.++++..||++|-|||.|+..+..+|+ +|+|||+++.|+...++..+....+.+.+++.+|....++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k------------kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK------------KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC------------eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 477889999999999999999999986 9999999999999998888755556899999999877653
Q ss_pred cCCCCCccEEEEcccc
Q 044245 143 VDIDSRADILVSEILD 158 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~ 158 (694)
..||++|+++.+
T Consensus 122 ----P~fd~cVsNlPy 133 (315)
T KOG0820|consen 122 ----PRFDGCVSNLPY 133 (315)
T ss_pred ----cccceeeccCCc
Confidence 379999998654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-06 Score=91.26 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=67.5
Q ss_pred HhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC
Q 044245 45 DMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG 124 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng 124 (694)
-..|-..-...|..++..+-..+..|||+.||+|.+|+.+|+.+. +|+|+|.++.+++.|++|++.|+
T Consensus 175 fQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~------------~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 175 FQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK------------KVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp --SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS------------EEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC------------eEEEeeCCHHHHHHHHHHHHHcC
Confidence 344555544555555554322234899999999999999998864 99999999999999999999999
Q ss_pred CCCcEEEEeccccccccc------------cCC-CCCccEEEEccccccc
Q 044245 125 MGRNIKVINKRSDELEVG------------VDI-DSRADILVSEILDSEL 161 (694)
Q Consensus 125 l~~~I~vi~~~~~~l~~~------------~~l-~~~~DlIvse~~~~~l 161 (694)
+. +++++.++.+++... ..+ ..++|+|+.+|.-.++
T Consensus 243 i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 243 ID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred CC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 96 899999887654210 001 1368999998877544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-06 Score=78.34 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+|--.....--...|+.|+|+||| |+|++-|+-.| |++|+++|. .+.+.+++++++.+ +. ++|+++..+++++
T Consensus 32 a~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdi--D~~a~ei~r~N~~~--l~-g~v~f~~~dv~~~ 105 (198)
T COG2263 32 AYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDI--DPEALEIARANAEE--LL-GDVEFVVADVSDF 105 (198)
T ss_pred HHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEec--CHHHHHHHHHHHHh--hC-CceEEEEcchhhc
Confidence 333333333344578899999999 99999999997 999999999 67777888888887 43 7899999877766
Q ss_pred cccccCCccccEEEccc
Q 044245 471 TMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~ 487 (694)
. .++|++|..|
T Consensus 106 ~------~~~dtvimNP 116 (198)
T COG2263 106 R------GKFDTVIMNP 116 (198)
T ss_pred C------CccceEEECC
Confidence 4 5688888885
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=72.97 Aligned_cols=103 Identities=16% Similarity=0.034 Sum_probs=69.9
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+|+| |.++..+++..+..+|+++|. ++.+.+.+++.++.+++. +++++.+...+... .. .+++|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~-~~~~D~ 91 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIER--NPEALRLIERNARRFGVS--NIVIVEGDAPEALE-DS-LPEPDR 91 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcC--CHHHHHHHHHHHHHhCCC--ceEEEeccccccCh-hh-cCCCCE
Confidence 346789999999 988888888633589999999 777777888888888884 68888776543211 12 368999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
|++..-. .... + +.+. ..++|+|||.++-.
T Consensus 92 v~~~~~~----~~~~-~-----~l~~-~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 92 VFIGGSG----GLLQ-E-----ILEA-IWRRLRPGGRIVLN 121 (124)
T ss_pred EEECCcc----hhHH-H-----HHHH-HHHHcCCCCEEEEE
Confidence 9986410 1111 1 1111 23479999987643
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-06 Score=80.53 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=58.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.|++. +|+++.+.... .+ +++.|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~----~~-~~~~D~ 100 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIER--NPDALRLIKENRQRFGCG--NIDIIPGEAPI----EL-PGKADA 100 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC--CeEEEecCchh----hc-CcCCCE
Confidence 356789999999 999999888754579999999 777777888888888884 69999876431 22 357999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++..
T Consensus 101 v~~~~ 105 (187)
T PRK08287 101 IFIGG 105 (187)
T ss_pred EEECC
Confidence 99753
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=78.56 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc---c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV---G 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~---~ 142 (694)
..+++||||.=||.-++..|.+-+ +.++|+++|+++...+.+.+..+..|..++|+++++...+.-. .
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp---------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP---------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC---------CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence 478999999999999999999876 4689999999999999999999999999999999999765321 1
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
....+.||.++.+--- ........+.+ +++++||+++-+..-..+ +|..+
T Consensus 144 ~~~~~tfDfaFvDadK-----~nY~~y~e~~l-~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 144 DGESGTFDFAFVDADK-----DNYSNYYERLL-RLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred cCCCCceeEEEEccch-----HHHHHHHHHHH-hhcccccEEEEeccccCC-cccCc
Confidence 1123679999864211 22333444454 499999999998887777 55544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=79.93 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=61.2
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
+.....++..|||+||| |.++..+|+. +...+|+++|. ++.+.+.+++.++.+++. ++++++.++..+.-. .
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~--~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~---~ 139 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEI--VKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLE---K 139 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCc---c
Confidence 33344467789999999 9888777764 32458999999 666666788888899987 789999987653221 1
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
..+.|+|++..
T Consensus 140 ~~~fD~Ii~~~ 150 (205)
T PRK13944 140 HAPFDAIIVTA 150 (205)
T ss_pred CCCccEEEEcc
Confidence 35799998874
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=82.06 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...+++++.+.....+++.|||+||| |.++...++. |...+|+++|. ++.+.+.+++.++.+++ ++++++.++.
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~--~~v~~~~~d~ 105 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF--SENMLSVGRQKVKDAGL--HNVELVHGNA 105 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHhcCC--CceEEEEech
Confidence 44455666666655567899999999 8877777664 43469999999 66666677877777787 4799999887
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++. ++.+++|+|++-..+. . ++ .... ..+. ..+.|+|||.++
T Consensus 106 ~~~~---~~~~~fD~V~~~~~l~---~-~~-~~~~--~l~~-~~~~Lk~gG~l~ 148 (231)
T TIGR02752 106 MELP---FDDNSFDYVTIGFGLR---N-VP-DYMQ--VLRE-MYRVVKPGGKVV 148 (231)
T ss_pred hcCC---CCCCCccEEEEecccc---c-CC-CHHH--HHHH-HHHHcCcCeEEE
Confidence 6653 2346899998753111 1 11 1111 1111 234699999875
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=7e-06 Score=81.16 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=75.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
..+||||||.|...+.+|+..+ ...++|+|+....+..|.+.+...++. |+.++++++..+....--++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P----------d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~ 87 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP----------DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPG 87 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST----------TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTT
T ss_pred CeEEEecCCCCHHHHHHHHHCC----------CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCC
Confidence 4899999999999999999875 679999999999999999999999996 99999999887431111136
Q ss_pred CccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeE
Q 044245 148 RADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~i 184 (694)
.+|-|.....+-..-. .-.-+.++..+.+.|+|||.+
T Consensus 88 ~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 88 SVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp SEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred chheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 7887765433321110 112346777788899999976
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.4e-06 Score=82.69 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=66.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++..|||||+|.|.|+..+++.++ +|+|+|+++.++...++... ..++++++++|+....++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~------------~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA------------RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC------------eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh
Confidence 55689999999999999999999986 89999999999999887764 3468999999998876532
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.. +++.||+|+.++
T Consensus 93 l~--~~~~vVaNlPY~ 106 (259)
T COG0030 93 LA--QPYKVVANLPYN 106 (259)
T ss_pred hc--CCCEEEEcCCCc
Confidence 11 689999997764
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.2e-06 Score=84.33 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=61.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.++.+++.++++... ..+++++++|..++..+
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~------------~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK------------KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC------------cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 35678999999999999999999875 799999999999999876643 35899999999887642
Q ss_pred CCCCCcc---EEEEcccc
Q 044245 144 DIDSRAD---ILVSEILD 158 (694)
Q Consensus 144 ~l~~~~D---lIvse~~~ 158 (694)
.+| +|++++..
T Consensus 91 ----~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ----DFPKQLKVVSNLPY 104 (253)
T ss_pred ----HcCCcceEEEcCCh
Confidence 355 89987653
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-06 Score=80.81 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=47.2
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
.+.+.+....+.-+|||||-+|.+++.+|+... ...|.|||+++..++.|+++++
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~----------~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFG----------PRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhc----------cceeeEeeccHHHHHHHHHhcc
Confidence 445555566789999999999999999999886 4689999999999999999875
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.1e-06 Score=81.03 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+|.+|+|+-+| |..++.+|+.+++++|+|+|- ++.|.+++++.++.|+++ ++|++++++..++.. ..+.|-|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~--Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~----~~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDL--NPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP----EGKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES---HHHHHHHHHHHHHTT-T-TTEEEEES-GGG-------TT-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecC--CHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC----ccccCEE
Confidence 57799999999 999999999666899999999 899999999999999998 999999998776643 3678988
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
|.-
T Consensus 174 im~ 176 (200)
T PF02475_consen 174 IMN 176 (200)
T ss_dssp EE-
T ss_pred EEC
Confidence 875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-06 Score=85.70 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.++||+|||||+.+-.+-... .+.+++|+|.+|++.|.+. |+=+. +.+++...+.. ..-++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a------------~~ltGvDiS~nMl~kA~eK----g~YD~--L~~Aea~~Fl~-~~~~e 187 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMA------------DRLTGVDISENMLAKAHEK----GLYDT--LYVAEAVLFLE-DLTQE 187 (287)
T ss_pred ceeeecccCcCcccHhHHHHH------------hhccCCchhHHHHHHHHhc----cchHH--HHHHHHHHHhh-hccCC
Confidence 799999999999998876654 4899999999999988763 32221 22233222211 12347
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++|+|++. ..+.+-+.++.+.-....+|+|||.+..+
T Consensus 188 r~DLi~Aa---DVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 188 RFDLIVAA---DVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred cccchhhh---hHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 99999873 33334455777777778899999988644
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=83.01 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=72.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++...|+.| .+|+++|. ++.+.+.|++.++.+|+. ++++++.+..+++.. ...++.|+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~--s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~--~~~~~fD~V 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDL--SAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQ--HLETPVDLI 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC--CEEEEEEC--CHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhh--hcCCCCCEE
Confidence 35689999999 99999999985 68999999 676667788888888887 799999998776642 224689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..+. .++ +-. .+-..+.++|||||.++
T Consensus 117 ~~~~vl~----~~~-~~~---~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 117 LFHAVLE----WVA-DPK---SVLQTLWSVLRPGGALS 146 (255)
T ss_pred EehhHHH----hhC-CHH---HHHHHHHHHcCCCeEEE
Confidence 9753111 111 111 11122345799999873
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=80.44 Aligned_cols=80 Identities=10% Similarity=-0.057 Sum_probs=60.0
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..|||+||| |.++...|+..+ ..+|+++|. ++.+.+.+++.++.+|+ ++|+++.++..+... ...
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~--~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~---~~~ 145 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIER--IPELAEKAERRLRKLGL--DNVIVIVGDGTQGWE---PLA 145 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHCCC--CCeEEEECCcccCCc---ccC
Confidence 334567899999999 999888888642 246999999 66666788888999998 479999887553321 135
Q ss_pred cccEEEccc
Q 044245 479 KVDLLIGEP 487 (694)
Q Consensus 479 ~vDvivsE~ 487 (694)
+.|+|+...
T Consensus 146 ~fD~Ii~~~ 154 (215)
T TIGR00080 146 PYDRIYVTA 154 (215)
T ss_pred CCCEEEEcC
Confidence 799998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=85.79 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-cccEEEeecccccccccccCCccccEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-IDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+..|||+||| |.+++.+++.+...+|+++|. +++|.+.+++.++.|+.+ .++++++.++.- + .+.++++|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~--S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~--~~~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDE--SPMAVASSRLNVETNMPEALDRCEFMINNAL--S--GVEPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccCceEEEEEcccc--c--cCCCCCEEEE
Confidence 3579999999 999999998754579999999 888888899999999864 137888876532 1 2234689999
Q ss_pred Eccc-cccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 484 IGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 484 vsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
||-| |...+ .+. ..+..-+.+++ .+.|+|||.+
T Consensus 303 lsNPPfh~~~--~~~-~~ia~~l~~~a-~~~LkpGG~L 336 (378)
T PRK15001 303 LCNPPFHQQH--ALT-DNVAWEMFHHA-RRCLKINGEL 336 (378)
T ss_pred EECcCcccCc--cCC-HHHHHHHHHHH-HHhcccCCEE
Confidence 9985 43321 122 22211122222 2469999953
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=84.20 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=71.1
Q ss_pred ChhHHHHHH-HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHH---HHHHHhccCCcccccE
Q 044245 386 DGEWRLSMV-MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQ---YLRTVADPNCFSIDRV 460 (694)
Q Consensus 386 D~~r~~~y~-~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~---~~~~i~~~N~l~~~~i 460 (694)
|.+...-.. .++...+...+++.||||||| |.+++.+++.| +++|+++++ ++.+.. .+++.+. -. .++
T Consensus 101 ~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDp--S~~ml~q~~~~~~~~~---~~-~~v 173 (314)
T TIGR00452 101 DSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDP--TVLFLCQFEAVRKLLD---ND-KRA 173 (314)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcC--CHHHHHHHHHHHHHhc---cC-CCe
Confidence 555544333 234445555678999999999 99888888886 889999999 553221 1222221 12 467
Q ss_pred EEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.++....+++.. ....|+|+|...... ++ +-.. ..+ .+.+.|+|||.++
T Consensus 174 ~~~~~~ie~lp~----~~~FD~V~s~gvL~H----~~-dp~~--~L~-el~r~LkpGG~Lv 222 (314)
T TIGR00452 174 ILEPLGIEQLHE----LYAFDTVFSMGVLYH----RK-SPLE--HLK-QLKHQLVIKGELV 222 (314)
T ss_pred EEEECCHHHCCC----CCCcCEEEEcchhhc----cC-CHHH--HHH-HHHHhcCCCCEEE
Confidence 888776666542 247999999752211 11 1111 111 2234699999765
|
Known examples to date are restricted to the proteobacteria. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=76.42 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=79.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
-....+...+|.+++||||| |-++.-+|++|-..||||+|. .+.+.+.++++.++.|. ++++|+++.+-+.-. +
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~--~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~-~ 99 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIER--DEEALELIERNAARFGV--DNLEVVEGDAPEALP-D 99 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEec--CHHHHHHHHHHHHHhCC--CcEEEEeccchHhhc-C
Confidence 34455666788999999999 999999998877889999999 77778889999999996 699999997654422 2
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcce
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+ .++|.|+-.+= +=++ ..|. .+ ...|+|||+++=+.
T Consensus 100 ~--~~~daiFIGGg-----~~i~-~ile--~~----~~~l~~ggrlV~na 135 (187)
T COG2242 100 L--PSPDAIFIGGG-----GNIE-EILE--AA----WERLKPGGRLVANA 135 (187)
T ss_pred C--CCCCEEEECCC-----CCHH-HHHH--HH----HHHcCcCCeEEEEe
Confidence 2 26898887751 1222 2221 11 11489999876443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.4e-06 Score=83.32 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=76.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-------cC----CCCcEEEE
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-------NG----MGRNIKVI 132 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-------ng----l~~~I~vi 132 (694)
..++.+||+.|||.|.-.+++|+.|. +|+|+|+|+.+++.+.+.... .+ -.++|+++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~------------~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH------------DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE------------EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC------------eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 45567999999999999999999984 999999999999887432211 01 12478999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++|..++.. ...++||+|.=-..- +.+...+.+.....+.++|+|||.++
T Consensus 103 ~gDfF~l~~--~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 103 CGDFFELPP--EDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp ES-TTTGGG--SCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred EcccccCCh--hhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 999988764 223589999853222 23356667777778888999999843
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=81.15 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.+.++.....+..|+|+||| |.|++.+|+.....+|+-+|. +.+|-+.++++++.|+++ +. +|+.+.. -.
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDv--n~~Av~~ar~Nl~~N~~~-~~-~v~~s~~---~~- 219 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDV--NARAVESARKNLAANGVE-NT-EVWASNL---YE- 219 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEec--CHHHHHHHHHhHHHcCCC-cc-EEEEecc---cc-
Confidence 345566555555589999999 999999999865789999999 888889999999999997 44 6665531 11
Q ss_pred ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 474 ~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
.. .++.|.|||-|=|- +|.--...+---+.+.+. +.|++||.+
T Consensus 220 ~v-~~kfd~IisNPPfh--~G~~v~~~~~~~~i~~A~-~~L~~gGeL 262 (300)
T COG2813 220 PV-EGKFDLIISNPPFH--AGKAVVHSLAQEIIAAAA-RHLKPGGEL 262 (300)
T ss_pred cc-cccccEEEeCCCcc--CCcchhHHHHHHHHHHHH-HhhccCCEE
Confidence 12 24899999996222 332221111001223332 359999954
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.6e-06 Score=86.51 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=79.9
Q ss_pred HHHhhCCHHHHHHHHHHHHhhcc--CCCEEEEEcCCCCH-HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 43 YLDMLNDSYRNRAYRLAIDKMVT--KSCHVLDIGAGTGL-LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~~~--~~~~VLDiG~GtG~-lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
+..-+|+.++...+...+.+... ++.+|||||||-|. |..+ .+++. .+++|+|++...++.|+++
T Consensus 37 ~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw-~~~~i-----------~~~vg~Dis~~si~ea~~R 104 (331)
T PF03291_consen 37 HLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKW-QKAKI-----------KHYVGIDISEESIEEARER 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHH-HHTT------------SEEEEEES-HHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHH-HhcCC-----------CEEEEEeCCHHHHHHHHHH
Confidence 45556666655554444443222 67999999999765 5555 44543 6999999999999999998
Q ss_pred HHH---------cCCCCcEEEEeccccccccccC-C--CCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 120 LHV---------NGMGRNIKVINKRSDELEVGVD-I--DSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 120 ~~~---------ngl~~~I~vi~~~~~~l~~~~~-l--~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+. ....-...++.+|...-.+... . ..+||+|-+.. +-+..-.|.....++..+...|+|||.+|
T Consensus 105 y~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 105 YKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp HHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 832 1112246677777654332111 1 24899998743 11112224456667788888999999986
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.8e-06 Score=88.73 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=77.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc--CCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT--QQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l--~~~~vD 481 (694)
+++.|||+|+| |.+++.||..| |.+|+++|. ++.+.++++++++.||++.++|+++.+++.+.-. .+ ..++.|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~--s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~-~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDT--SQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR-TYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEEC--CHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHH-HHHhcCCCCC
Confidence 57889999999 88898888764 899999999 7888889999999999952489999997755421 11 135799
Q ss_pred EEEcc-ccccCCccccCcchhh-H-HHHHhhcccccCCCceEEcce
Q 044245 482 LLIGE-PYYFGNDGMLPWQNLR-F-WKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 482 vivsE-~~~~~~e~~l~w~~l~-f-~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+||.. |||.....-+. ..++ | -+.+.+ .++|+|||.++=..
T Consensus 296 lVilDPP~f~~~k~~l~-~~~~~y~~l~~~a-~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLM-GACRGYKDINMLA-IQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHH-HHHHHHHHHHHHH-HHHcCCCeEEEEEe
Confidence 99999 56543111111 1110 0 011111 24799999876444
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-06 Score=76.81 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+|++++|+|||+|.|+..++-.++ ..|.|+|+++++++.+.+|+....+ ++.+++.+..++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~-----------e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~--- 111 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN-----------ESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK--- 111 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC-----------ceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc---
Confidence 589999999999999977666554 6899999999999999999988777 579999999887652
Q ss_pred CCCccEEEEcc
Q 044245 146 DSRADILVSEI 156 (694)
Q Consensus 146 ~~~~DlIvse~ 156 (694)
.+.||..|-|+
T Consensus 112 ~g~fDtaviNp 122 (185)
T KOG3420|consen 112 GGIFDTAVINP 122 (185)
T ss_pred CCeEeeEEecC
Confidence 27899888776
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=78.57 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=59.6
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||||+| |.++.++|+..+. .+|+++|. ++...+.+++.++.+|+ ++|+++.++..+... ...+
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~--~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~---~~~~ 145 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIER--IPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYE---ENAP 145 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHHHHcCC--CCeEEEECCcccCCC---cCCC
Confidence 33467899999999 9998877776323 59999999 67666788888888888 479999987553321 2357
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|++..
T Consensus 146 fD~I~~~~ 153 (212)
T PRK13942 146 YDRIYVTA 153 (212)
T ss_pred cCEEEECC
Confidence 89998764
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=80.64 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=78.4
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
|......++|+.|++.|+| |.|++..|++ |+..+|+++|. .+...+.|+++++.-|+. |+|++..+++.+...
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~--r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~-- 160 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI--REDFAKTARENLSEFGLG-DRVTLKLGDVREGID-- 160 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEe--cHHHHHHHHHHHHHhccc-cceEEEecccccccc--
Confidence 4444555689999999999 9999999985 54689999999 555667889999988997 889998886655443
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++.+|.|+-.. --||.+|. +....|+|||.+
T Consensus 161 --~~~vDav~LDm-------p~PW~~le------~~~~~Lkpgg~~ 191 (256)
T COG2519 161 --EEDVDAVFLDL-------PDPWNVLE------HVSDALKPGGVV 191 (256)
T ss_pred --ccccCEEEEcC-------CChHHHHH------HHHHHhCCCcEE
Confidence 35899998873 25687662 223358999643
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=80.95 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHH
Q 044245 55 AYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKL 115 (694)
Q Consensus 55 ~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~ 115 (694)
.+..++... ..++.+|||+|||||.++..+++.|+ .+|+|+|.++.|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-----------~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-----------KEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-----------CEEEEEeCCHHHHHH
Confidence 334555543 24678999999999999999999976 699999999987755
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=84.64 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=67.9
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+...+..++++.||||||| |.++..+|+.| +++|+++++ ++.+..-++.+.+..+.. .+|+++.+..+++..
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~--S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDP--SQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLPA--- 186 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcC--CHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCCC---
Confidence 3444545678899999999 99999899986 889999999 554321112222222223 579999987776643
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++.|+|+|-..... .. +-.. ..+ .+.+.|+|||.++
T Consensus 187 -~~~FD~V~s~~vl~H----~~-dp~~--~L~-~l~~~LkpGG~lv 223 (322)
T PRK15068 187 -LKAFDTVFSMGVLYH----RR-SPLD--HLK-QLKDQLVPGGELV 223 (322)
T ss_pred -cCCcCEEEECChhhc----cC-CHHH--HHH-HHHHhcCCCcEEE
Confidence 467999998531111 11 1111 111 2234699999776
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.6e-06 Score=79.07 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=60.7
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC--cccccEEEeecc-cccccccccC
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC--FSIDRVEILQKG-KKCLTMDDTQ 476 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--l~~~~i~vi~~~-~~~~~~~~l~ 476 (694)
...++++.||+||+| |+.+|.+|+..++.+|++-+. .+ +.+.++.+++.|+ .. .+|++..=. .+++....+.
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~--~~-~l~~l~~Ni~~N~~~~~-~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDY--NE-VLELLRRNIELNGSLLD-GRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE---S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEecc--ch-hhHHHHHHHHhcccccc-ccccCcEEEecCcccccccc
Confidence 445678999999999 999999999934889999887 55 5677899999998 54 677775422 1222222234
Q ss_pred CccccEEEc-cccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 477 QKKVDLLIG-EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 477 ~~~vDvivs-E~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
+.++|+||+ +..|. +...+ -..+.++++|+|++.
T Consensus 117 ~~~~D~IlasDv~Y~--~~~~~-------~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 117 PHSFDVILASDVLYD--EELFE-------PLVRTLKRLLKPNGK 151 (173)
T ss_dssp -SSBSEEEEES--S---GGGHH-------HHHHHHHHHBTT-TT
T ss_pred cccCCEEEEecccch--HHHHH-------HHHHHHHHHhCCCCE
Confidence 568998887 55444 13333 122233457898886
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=83.05 Aligned_cols=104 Identities=16% Similarity=0.081 Sum_probs=71.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++..|||+|+| |++++.+++. |...+|++++. ++.+.+.+++..+.+++ ++++++.+..+++.. +.+.+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~--s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~---~~~~fD 148 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDM--TPEMLAKARANARKAGY--TNVEFRLGEIEALPV---ADNSVD 148 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECC--CHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCC---CCCcee
Confidence 367899999999 9888877775 42348999999 66666778888888888 478999987766543 346799
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
+|++...+. ..+ +.-. ..+. .-+.|||||+++=
T Consensus 149 ~Vi~~~v~~----~~~-d~~~--~l~~-~~r~LkpGG~l~i 181 (272)
T PRK11873 149 VIISNCVIN----LSP-DKER--VFKE-AFRVLKPGGRFAI 181 (272)
T ss_pred EEEEcCccc----CCC-CHHH--HHHH-HHHHcCCCcEEEE
Confidence 999885322 122 1111 1122 2347999998764
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-05 Score=77.55 Aligned_cols=97 Identities=25% Similarity=0.319 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+++|||+|.|.-|+.+|-..+ ..+|+-+|.+..-+...++..+.-|++ |+++++++++++.. +
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p----------~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~--~-- 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP----------DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQ--E-- 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc----------CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhccc--c--
Confidence 58999999999999999886654 567999999999999999999999996 89999999999762 1
Q ss_pred CC-ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SR-ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~-~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+ ||+|+|--+.+ +..+......++++||.++
T Consensus 133 ~~~~D~vtsRAva~-------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 133 KKQYDVVTSRAVAS-------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cccCcEEEeehccc-------hHHHHHHHHHhcccCCcch
Confidence 23 99999865542 6667777778999988765
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=80.44 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=60.1
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
+.|||+||| |.+++.+|+.....+|+++|. ++.+.++++++++.|++. ++|++++++..+ .++.+++|+|||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDi--s~~al~~a~~n~~~~~~~-~~v~~~~~d~~~----~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDI--SPDALAVAEENAEKNQLE-HRVEFIQSNLFE----PLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECchhc----cCcCCCccEEEE
Confidence 579999999 999988888743369999999 777788899999999997 789999986432 233347999999
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
.|
T Consensus 189 NP 190 (284)
T TIGR00536 189 NP 190 (284)
T ss_pred CC
Confidence 84
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-05 Score=82.49 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=66.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |..++.+|+.| .+|+++|. ++.+.+.+++.++.+++. ++++..+.+.. .+ .+++|+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~--s~~ai~~~~~~~~~~~l~---v~~~~~D~~~~---~~-~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDI--NQQSLENLQEIAEKENLN---IRTGLYDINSA---SI-QEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHHcCCc---eEEEEechhcc---cc-cCCccEE
Confidence 45689999999 99999999986 58999999 777777788888888873 66665543332 23 4789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++...+. .++-+.+.- +. ..+.+.|+|||.+
T Consensus 189 ~~~~vl~----~l~~~~~~~-~l-~~~~~~LkpgG~~ 219 (287)
T PRK12335 189 LSTVVLM----FLNRERIPA-II-KNMQEHTNPGGYN 219 (287)
T ss_pred EEcchhh----hCCHHHHHH-HH-HHHHHhcCCCcEE
Confidence 9986332 122011110 11 1223469999973
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-05 Score=76.91 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=54.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
++.+.....++.+|||+|+| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.+++. +|+++.+++++
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~--s~~~~~~a~~n~~~~~~~--~v~~~~~d~~~ 101 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIER--DEEVVNLIRRNCDRFGVK--NVEVIEGSAPE 101 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC--CeEEEECchHH
Confidence 34455544567899999999 999988887643579999999 777777888888889884 69999887654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-05 Score=81.47 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=83.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-cccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK-RSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~-~~~~l~~~ 142 (694)
+.+|..|||=-||||.+.+.|.-.|+ +++|+|++..|++-|+.|.+..+++ ...++.. |++.++++
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~------------~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA------------RVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLR 261 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc------------eEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCC
Confidence 66799999999999999999998886 9999999999999999999999876 5656666 89888753
Q ss_pred cCCCCCccEEEEcccccccc---CC---ChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELL---GE---GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~---~e---~~l~~l~~~~~~~L~p~G~ii 185 (694)
. .++|.|++++.+--.. .+ ..+..+++.....|++||.++
T Consensus 262 ~---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 262 D---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred C---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 2 2599999998553211 12 234456666677999999764
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=80.26 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.+++.+|+.....+|+++|- ++.+.++|++.++.||+. ++|+++.++..+ .++.++.|+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDi--s~~al~~A~~n~~~~~~~-~~i~~~~~D~~~----~~~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDI--SPDALAVAEINIERHGLE-DRVTLIQSDLFA----ALPGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECchhh----ccCCCCccEE
Confidence 34689999999 999988888643468999999 788888999999999997 899999986422 2334579999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
|+-|
T Consensus 194 v~NP 197 (284)
T TIGR03533 194 VSNP 197 (284)
T ss_pred EECC
Confidence 9984
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.6e-05 Score=79.64 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=87.3
Q ss_pred HHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCc------------------------------cCCCcc
Q 044245 54 RAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTT------------------------------SLNTKG 101 (694)
Q Consensus 54 ~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~------------------------------~~~~~~ 101 (694)
+....||... -.++...+|--||||.+.+.+|..++. .... ...+..
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~n-iAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAAN-IAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccc-cCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 3444454432 234578999999999999999987740 0000 000111
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCC-hH----HHHHHHHHh
Q 044245 102 MVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEG-LI----PTLQHAHDR 176 (694)
Q Consensus 102 ~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~-~l----~~l~~~~~~ 176 (694)
.++|+|+++.+++.|+.|+++.|+.+.|++.+++...+..+ . +.+|+|||||.+-.-+++. .+ +.+...+++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--L-EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--C-CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998642 1 6899999999876666544 22 334444445
Q ss_pred ccCCCCe
Q 044245 177 LLVENPL 183 (694)
Q Consensus 177 ~L~p~G~ 183 (694)
.++.-+.
T Consensus 333 ~~~~ws~ 339 (381)
T COG0116 333 LLAGWSR 339 (381)
T ss_pred HhcCCce
Confidence 5544333
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.6e-05 Score=75.94 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=82.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|++-|+|+|.+|.+++|+-+ |.++++..|....-++.|++-.+..|+++++++++.|+....+..
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~---------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVA---------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhC---------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 67899999999999999999999987 568999999999999999999999999999999999988766533
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCe
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ 183 (694)
...++|.|+.++... -..+-++.. .|+.+|.
T Consensus 174 -ks~~aDaVFLDlPaP-------w~AiPha~~-~lk~~g~ 204 (314)
T KOG2915|consen 174 -KSLKADAVFLDLPAP-------WEAIPHAAK-ILKDEGG 204 (314)
T ss_pred -cccccceEEEcCCCh-------hhhhhhhHH-HhhhcCc
Confidence 246899999875542 223334444 5666553
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=75.46 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..+++.|||+|+| |.+++.+++.| + +|+++|. ++.+.+.+++.++.|+. +++++.++..+. + ..+.|
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~----~-~~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K-CILTTDI--NPFAVKELRENAKLNNV---GLDVVMTDLFKG----V-RGKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C-EEEEEEC--CHHHHHHHHHHHHHcCC---ceEEEEcccccc----c-CCccc
Confidence 3456789999999 99999999986 5 9999999 77777788888888886 378887764332 1 35899
Q ss_pred EEEccccc
Q 044245 482 LLIGEPYY 489 (694)
Q Consensus 482 vivsE~~~ 489 (694)
+|++-|-|
T Consensus 85 ~Vi~n~p~ 92 (179)
T TIGR00537 85 VILFNPPY 92 (179)
T ss_pred EEEECCCC
Confidence 99998533
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4e-05 Score=77.66 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=59.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++..+|+.| +++|+++|- ++.+.+++++.++.|++ +++++.++..+. ++.++.|+|
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~--s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~----~~~~~fD~V 105 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDI--SRRAVRSARLNALLAGV---DVDVRRGDWARA----VEFRPFDVV 105 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHHhCC---eeEEEECchhhh----ccCCCeeEE
Confidence 56789999999 99999999985 789999999 67666778888888887 378887754432 234689999
Q ss_pred Ecc-cccc
Q 044245 484 IGE-PYYF 490 (694)
Q Consensus 484 vsE-~~~~ 490 (694)
|+. ||..
T Consensus 106 i~npPy~~ 113 (223)
T PRK14967 106 VSNPPYVP 113 (223)
T ss_pred EECCCCCC
Confidence 998 4543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=76.68 Aligned_cols=110 Identities=6% Similarity=-0.021 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
.+..+.++....+...+||+||| |==|++.|+.| -.|+|++. ++.+.+.++++++.++++ |+....+.++..
T Consensus 18 ~hs~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~--s~~al~~l~~~a~~~~l~---i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 18 THSEVLEAVPLLKPGKALDLGCGEGRNALYLASQG--FDVTAVDI--SPVALEKLQRLAEEEGLD---IRTRVADLNDFD 90 (192)
T ss_dssp --HHHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEES--SHHHHHHHHHHHHHTT-T---EEEEE-BGCCBS
T ss_pred CcHHHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEEC--CHHHHHHHHHHHhhcCce---eEEEEecchhcc
Confidence 34445666666677789999999 99999999997 57999999 777766778888888884 777666544333
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
+ +++.|+|+|...+. .|+-+.+. -.-+++...++|||.
T Consensus 91 ---~-~~~yD~I~st~v~~----fL~~~~~~--~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 91 ---F-PEEYDFIVSTVVFM----FLQRELRP--QIIENMKAATKPGGY 128 (192)
T ss_dssp -----TTTEEEEEEESSGG----GS-GGGHH--HHHHHHHHTEEEEEE
T ss_pred ---c-cCCcCEEEEEEEec----cCCHHHHH--HHHHHHHhhcCCcEE
Confidence 3 46899999974332 23312211 112233446899995
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=5e-05 Score=84.71 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=85.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||++||.|.=+..+|.... +.+.|+|+|+++.-++.+++++++.|+. +|.+.+.|...+..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~---------~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~-- 178 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMN---------NQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGA-- 178 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhh--
Confidence 46789999999999999888888764 2469999999999999999999999996 78999888876531
Q ss_pred CCCCCccEEEEccccc--cccCCC--h---------------HHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLGEG--L---------------IPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~e~--~---------------l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
..++.||.|+.+..=+ +.+... . ...++....++|+|||+++=..+|+.
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 2346899999765322 222111 0 01344444568999999875555544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.9e-05 Score=74.74 Aligned_cols=111 Identities=16% Similarity=0.052 Sum_probs=69.6
Q ss_pred HHHHHHhh-ccC--CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 56 YRLAIDKM-VTK--SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 56 y~~ai~~~-~~~--~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
-.+|++-. +.. ..-+||||||||+-+-.+...|. ..+++|+|+.|++.|.+.- ++ -.++
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh------------~wiGvDiSpsML~~a~~~e----~e--gdli 98 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH------------QWIGVDISPSMLEQAVERE----LE--GDLI 98 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc------------eEEeecCCHHHHHHHHHhh----hh--cCee
Confidence 34555543 333 57899999999999888887764 8999999999999998621 11 1245
Q ss_pred eccccc-cccccCCCCCccEEEEccccccccC-----CC---hHHHHHHHHHhccCCCCeEEcC
Q 044245 133 NKRSDE-LEVGVDIDSRADILVSEILDSELLG-----EG---LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 133 ~~~~~~-l~~~~~l~~~~DlIvse~~~~~l~~-----e~---~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+|+-+ +++ .++.||-+||=---..+.+ +. -+..+...+...|++|++.+-+
T Consensus 99 l~DMG~Glpf---rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 99 LCDMGEGLPF---RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecCCCCCC---CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 566543 333 3578997766210011222 11 1224455566788888876643
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.95 E-value=6e-05 Score=78.45 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEeccccccccc--
Q 044245 67 SCHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINKRSDELEVG-- 142 (694)
Q Consensus 67 ~~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~~~~~l~~~-- 142 (694)
..++||||||.. +.++..++... .+++|.|+++..++.|+++++.| ++.++|+++.......-+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-----------W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-----------WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-------------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-----------CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh
Confidence 357999999965 66788777654 79999999999999999999999 9999999987654332111
Q ss_pred cCCCCCccEEEEcccccc
Q 044245 143 VDIDSRADILVSEILDSE 160 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~ 160 (694)
....++||+.+|+|..+.
T Consensus 172 ~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp TT--S-EEEEEE-----S
T ss_pred hcccceeeEEecCCcccc
Confidence 112368999999986643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=83.95 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=76.9
Q ss_pred HHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 53 NRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 53 ~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
.+.....|... +..++.+||+.||||.+++.+|+.. .+|+++|+++.+++.|+++++.||++ |.+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~------------~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~ 434 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV------------KRVIGVEISPDAVEDAEKNAQINGIS-NAT 434 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc------------cceeeeecChhhcchhhhcchhcCcc-cee
Confidence 45555556543 5567899999999999999999875 59999999999999999999999998 899
Q ss_pred EEeccccccccccCCCC---Ccc-EEEEccccccccCCChHHHHHHHHHhc
Q 044245 131 VINKRSDELEVGVDIDS---RAD-ILVSEILDSELLGEGLIPTLQHAHDRL 177 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~---~~D-lIvse~~~~~l~~e~~l~~l~~~~~~~ 177 (694)
++.|..+++-. ..+.. .-+ +.|.++.- .|+-..++.+++++
T Consensus 435 Fi~gqaE~~~~-sl~~~~~~~~~~v~iiDPpR-----~Glh~~~ik~l~~~ 479 (534)
T KOG2187|consen 435 FIVGQAEDLFP-SLLTPCCDSETLVAIIDPPR-----KGLHMKVIKALRAY 479 (534)
T ss_pred eeecchhhccc-hhcccCCCCCceEEEECCCc-----ccccHHHHHHHHhc
Confidence 99997777532 11111 234 55555543 23344555565544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=79.88 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=85.3
Q ss_pred HHHHHHHh----hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC---CC
Q 044245 55 AYRLAIDK----MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM---GR 127 (694)
Q Consensus 55 ~y~~ai~~----~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl---~~ 127 (694)
.|.+++.. ...+.++||-||-|.|..+..+.+... ..+|++||+++.+++.|++....... ..
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~----------~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~ 130 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPP----------VESITVVEIDPEVVELARKYFPEFSEGLDDP 130 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-----------SEEEEEES-HHHHHHHHHHTHHHHTTGGST
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCC----------cceEEEEecChHHHHHHHHhchhhccccCCC
Confidence 35555543 123578999999999999888887653 36899999999999999998765322 35
Q ss_pred cEEEEeccccccccccCCCC-CccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCc
Q 044245 128 NIKVINKRSDELEVGVDIDS-RADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~-~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
|++++.+|...+-. ...+ +||+|+.+..+....... .-..+.+..++.|+|||+++-+.
T Consensus 131 r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 131 RVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp TEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99999999877542 2235 899999987663222222 23456677778999999988665
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.3e-05 Score=80.39 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
+.|||+||| |.+++.+|+.....+|+++|- ++.+.++|++.++.||+. ++|++++++..+ .++.++.|+||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDi--s~~al~~A~~n~~~~~l~-~~i~~~~~D~~~----~l~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDI--SPDALAVAEINIERHGLE-DRVTLIESDLFA----ALPGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC-CcEEEEECchhh----hCCCCCccEEEE
Confidence 579999999 999888887643578999999 788888999999999997 899999986432 233457999999
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
-|
T Consensus 208 NP 209 (307)
T PRK11805 208 NP 209 (307)
T ss_pred CC
Confidence 84
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=7e-05 Score=80.81 Aligned_cols=102 Identities=16% Similarity=0.005 Sum_probs=70.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.||||||| |.++..+|+.. ..+|++++. ++.+.+.+++.++.+|+. ++|+++.++.+++.. +.+..|+|
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~--s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~---~~~~FD~V 190 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITL--SPVQAARANALAAAQGLS-DKVSFQVADALNQPF---EDGQFDLV 190 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCC---CCCCccEE
Confidence 56789999999 88888777753 258999999 676667778888889987 889999987766543 34689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-.... -+-+ .-. +.+ .+.+.|||||.++
T Consensus 191 ~s~~~~~---h~~d--~~~--~l~-e~~rvLkpGG~lv 220 (340)
T PLN02244 191 WSMESGE---HMPD--KRK--FVQ-ELARVAAPGGRII 220 (340)
T ss_pred EECCchh---ccCC--HHH--HHH-HHHHHcCCCcEEE
Confidence 9832111 1111 111 112 2234799999654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.4e-05 Score=75.73 Aligned_cols=106 Identities=19% Similarity=0.098 Sum_probs=80.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC-
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID- 146 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~- 146 (694)
..+||||||.|...+..|+..+ ...++|||+....+..|.+.+.+.++. |+.+++.|+.++..- -.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP----------~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~-~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP----------EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDY-LIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC----------CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHh-cCCC
Confidence 5899999999999999999876 578999999999999999999999997 899999998876521 122
Q ss_pred CCccEEEEccccccccCC-----ChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGE-----GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e-----~~l~~l~~~~~~~L~p~G~ii 185 (694)
+..|-|..+..+-..-.. -..+.++....+.|+|||.+.
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 367766654332211111 134567788888999999875
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.5e-05 Score=77.76 Aligned_cols=113 Identities=7% Similarity=0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-ch--HHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VF--LTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-gi--Lsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
|-..+.+.. +.+.||++|+| |. |+|.++. +++.+|+++|. ++.+.++|++.++.||++ ++|+++.+...+
T Consensus 59 ~L~~l~~~~---~~~~vLEiGt~~G~s~l~la~~~-~~~g~v~tiD~--d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~ 131 (234)
T PLN02781 59 FLSMLVKIM---NAKNTLEIGVFTGYSLLTTALAL-PEDGRITAIDI--DKEAYEVGLEFIKKAGVD-HKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHh---CCCEEEEecCcccHHHHHHHHhC-CCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEccHHH
Confidence 444444444 46789999998 65 4444443 33679999999 777778899999999998 999999998765
Q ss_pred cccccc----CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcce
Q 044245 470 LTMDDT----QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 470 ~~~~~l----~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
.- ..+ +.++.|+|+...--.. .. . |.... .++|+|||.++=+-
T Consensus 132 ~L-~~l~~~~~~~~fD~VfiDa~k~~---y~-----~--~~~~~-~~ll~~GG~ii~dn 178 (234)
T PLN02781 132 AL-DQLLNNDPKPEFDFAFVDADKPN---YV-----H--FHEQL-LKLVKVGGIIAFDN 178 (234)
T ss_pred HH-HHHHhCCCCCCCCEEEECCCHHH---HH-----H--HHHHH-HHhcCCCeEEEEEc
Confidence 41 111 1357899987631000 00 0 22221 24699999877443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=71.14 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=65.5
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--------C-CC
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--------M-GR 127 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--------l-~~ 127 (694)
.+++...+.+|...||+|+|||.|+.++++..++. ...++|||.-++.++++++++...- + ..
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~--------g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGAT--------GGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCC--------CccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 44555568899999999999999999999765422 2345999999999999999987543 1 13
Q ss_pred cEEEEeccccccccccCCCCCccEEEE
Q 044245 128 NIKVINKRSDELEVGVDIDSRADILVS 154 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~~~DlIvs 154 (694)
+..++.+|.+..... ..+||.|.+
T Consensus 145 ~l~ivvGDgr~g~~e---~a~YDaIhv 168 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAE---QAPYDAIHV 168 (237)
T ss_pred ceEEEeCCccccCCc---cCCcceEEE
Confidence 677788887765432 268999976
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=75.69 Aligned_cols=89 Identities=7% Similarity=-0.049 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhc--cCCcccccEEEeeccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVAD--PNCFSIDRVEILQKGK 467 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~--~N~l~~~~i~vi~~~~ 467 (694)
.+++.+.+.....++..|||+||| |.++...++. |...+|+++|. ++.+.+.|++-.. .++.. ++|+++.+..
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~--S~~ml~~A~~r~~~~~~~~~-~~i~~~~~d~ 136 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDF--SSEQLAVAASRQELKAKSCY-KNIEWIEGDA 136 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHhhhhhhccC-CCeEEEEccc
Confidence 345544444444567799999999 8888777764 42359999999 6655555543322 22233 5799999987
Q ss_pred ccccccccCCccccEEEcc
Q 044245 468 KCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE 486 (694)
+++.. +.+.+|+|++-
T Consensus 137 ~~lp~---~~~sfD~V~~~ 152 (261)
T PLN02233 137 TDLPF---DDCYFDAITMG 152 (261)
T ss_pred ccCCC---CCCCEeEEEEe
Confidence 76653 34679999874
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-05 Score=74.38 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=63.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-------HcCC-CCcEEEEecc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-------VNGM-GRNIKVINKR 135 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-------~ngl-~~~I~vi~~~ 135 (694)
+.++.+.+|||||.|...+.+|-... ..+.+|||+.+...+.|+...+ ..|. ..+++++++|
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~----------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTG----------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcC----------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 66789999999999988777775543 3579999999999888876543 2333 3478899988
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+.+.....-...|+|+++ +..+.+.....+...+. -|++|.++|
T Consensus 110 fl~~~~~~~~~s~AdvVf~N---n~~F~~~l~~~L~~~~~-~lk~G~~II 155 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVN---NTCFDPDLNLALAELLL-ELKPGARII 155 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE-----TTT-HHHHHHHHHHHT-TS-TT-EEE
T ss_pred ccccHhHhhhhcCCCEEEEe---ccccCHHHHHHHHHHHh-cCCCCCEEE
Confidence 76643211111468999986 44444455555554443 578888876
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.4e-05 Score=78.76 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=91.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEeccccccccccC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM-GRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl-~~~I~vi~~~~~~l~~~~~ 144 (694)
++||-||-|.|..+..+.+... ..+++.||+++..++.|++....- +. ..|++++.+|..++-. +
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~----------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~--~ 145 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP----------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR--D 145 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC----------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH--h
Confidence 6999999999999999999874 469999999999999999987532 22 3699999999877642 2
Q ss_pred CCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCceEEEEEE
Q 044245 145 IDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCRVTTYGQL 195 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ 195 (694)
.+++||+|+.+..+.....+.. -..+.+..++.|+++|+++-+....+...
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 3358999999876653222333 24577788889999999999877777776
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.3e-05 Score=78.47 Aligned_cols=113 Identities=14% Similarity=0.012 Sum_probs=74.3
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CC----CCcEEEEeccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GM----GRNIKVINKRS 136 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl----~~~I~vi~~~~ 136 (694)
....++..|+|+|||-|.-.+---++|. ++++++|+....++.|+++.+.. +. .-.+.++.+|.
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI-----------~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGI-----------GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcc-----------cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 3445688999999998866666667776 78999999999999998877532 11 12478898887
Q ss_pred cccccccCC---CCCccEEEEcccccccc-CCChHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDI---DSRADILVSEILDSELL-GEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l---~~~~DlIvse~~~~~l~-~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..-.+...+ ..+||+|-|..--++.+ .|.....++.-..+.|+|||.+|
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 654332222 23599998743222111 12233344444456999999986
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=66.91 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCCH-HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 66 KSCHVLDIGAGTGL-LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~-lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
++.+|||||||+|. ++..+++.|. .|+|+|+|+.+++.|+++ .+.++.+|..+-.. .
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~------------~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~--~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF------------DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL--E 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC------------EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH--H
Confidence 35789999999996 8999988874 999999999988877653 25678888876543 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHH
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~ 175 (694)
+-+.+|+|.+- -....+.+.+++..+
T Consensus 74 ~y~~a~liysi-----rpp~el~~~~~~la~ 99 (134)
T PRK04148 74 IYKNAKLIYSI-----RPPRDLQPFILELAK 99 (134)
T ss_pred HHhcCCEEEEe-----CCCHHHHHHHHHHHH
Confidence 33679999861 223344555555444
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=72.37 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=73.1
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
.+.+...++..||+||+| |..+-..|+.+ .+|+++|. .+..++.|++..+..|+. +|+|++++-. ..--+
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr--~~~L~~~A~~~L~~lg~~--nV~v~~gDG~---~G~~~ 135 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIER--IEELAEQARRNLETLGYE--NVTVRHGDGS---KGWPE 135 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEE--cHHHHHHHHHHHHHcCCC--ceEEEECCcc---cCCCC
Confidence 344555678899999999 99999999984 59999999 666566788899999995 4999988532 11111
Q ss_pred CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE-Ecce
Q 044245 477 QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII-MPFK 524 (694)
Q Consensus 477 ~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i-~P~~ 524 (694)
....|.|+..--. ..+| ..| .. .|+|||+| +|-.
T Consensus 136 ~aPyD~I~Vtaaa----~~vP-~~L---l~------QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAA----PEVP-EAL---LD------QLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeecc----CCCC-HHH---HH------hcccCCEEEEEEc
Confidence 2568999887421 2355 323 22 48999954 4544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=74.71 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+..+|+|||+|+|.++..++++.+ ..+++.+|. |..++.+++ .+||+++.+|..+ .+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P----------~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~-----~~ 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYP----------NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD-----PL 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHST----------TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT-----CC
T ss_pred CccEEEeccCcchHHHHHHHHHCC----------CCcceeecc-Hhhhhcccc-------ccccccccccHHh-----hh
Confidence 347899999999999999999986 579999998 888888877 5799999999873 34
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCC--CeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN--PLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~--G~iiP 186 (694)
|. +|+++.--+-+.. .+.....++..+.+.|+|| |+++-
T Consensus 157 P~-~D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp SS-ESEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred cc-ccceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 56 9998763222111 1223334566666789988 88763
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.2e-05 Score=79.30 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=63.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+++|.+||.|..+..++++.+ +.++|+|+|.++.|++.|++.++. .+++++++++..++..
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~---------~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~-- 82 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLG---------PKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKE-- 82 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCC---------CCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHH--
Confidence 35678999999999999999999864 247999999999999999987754 4689999999888642
Q ss_pred CCC---CCccEEEEc
Q 044245 144 DID---SRADILVSE 155 (694)
Q Consensus 144 ~l~---~~~DlIvse 155 (694)
.++ .++|.|+.+
T Consensus 83 ~l~~~~~~vDgIl~D 97 (296)
T PRK00050 83 VLAEGLGKVDGILLD 97 (296)
T ss_pred HHHcCCCccCEEEEC
Confidence 111 268998875
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.8e-05 Score=75.07 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=62.2
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-cccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-DDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~~l~~~ 478 (694)
....++..|||+||| |.+++.+|+..+..+||++|. ++.+.+.+.+.++. . .+|+++.++.++... ..+ .+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~--~~~ml~~l~~~a~~--~--~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEF--APRPMRELLEVAEE--R--KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEEC--CHHHHHHHHHHhhh--c--CCcEEEECCCCCcchhhhc-cc
Confidence 344577899999999 888888887632468999999 55433333333332 2 357778776553210 123 35
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++|+|+++. -.+|..- .+-....+.|||||.++
T Consensus 141 ~~D~i~~d~-------~~p~~~~---~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 141 KVDVIYQDV-------AQPNQAE---IAIDNAEFFLKDGGYLL 173 (226)
T ss_pred cCCEEEECC-------CChhHHH---HHHHHHHHhcCCCcEEE
Confidence 699999874 1344321 11112234699999643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=76.15 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCC-CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQGR-VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~-~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.|.+++....... ..+.||+||+| |.++.++++.-...+|+++|- .+...+++++....++.. ++++++.++..+
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEi--dp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEI--NPQVIAVARNHFELPENG-ERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHcCCCCCC-CceEEEECCHHH
Confidence 3566554433211 34689999999 888887766533578999999 676667778777666655 789999887654
Q ss_pred ccccccCCccccEEEccccccCCccccCcch-hhHHHHHhhcccccCCCceEE
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQN-LRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~-l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.-. .. +++.|+|+...|... ++.++-. ..|+-. ..+.|+|||+++
T Consensus 129 ~l~-~~-~~~yD~I~~D~~~~~--~~~~~l~t~efl~~---~~~~L~pgGvlv 174 (262)
T PRK04457 129 YIA-VH-RHSTDVILVDGFDGE--GIIDALCTQPFFDD---CRNALSSDGIFV 174 (262)
T ss_pred HHH-hC-CCCCCEEEEeCCCCC--CCccccCcHHHHHH---HHHhcCCCcEEE
Confidence 322 22 367999998865332 3322100 122221 123599999764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=74.95 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-c
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-D 473 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~ 473 (694)
|.......+|++|++.|+| |-|++..|++ |...+||+.|- .+.-.+.|++.++.+|+. ++|++.++++.+-.. .
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~--~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF--REDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES--SHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--ST
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc--CHHHHHHHHHHHHHcCCC-CCceeEecceecccccc
Confidence 5555566789999999999 9999999986 33569999999 555567889999999998 899999998743222 1
Q ss_pred ccCCccccEEEccccccCCccccCcchhhHHHHHhhccccc-CCCceE
Q 044245 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVL-SKEVII 520 (694)
Q Consensus 474 ~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L-~p~g~i 520 (694)
++ ...+|.|+-.. --||.+|. .+.. .| +|||++
T Consensus 109 ~~-~~~~DavfLDl-------p~Pw~~i~--~~~~----~L~~~gG~i 142 (247)
T PF08704_consen 109 EL-ESDFDAVFLDL-------PDPWEAIP--HAKR----ALKKPGGRI 142 (247)
T ss_dssp T--TTSEEEEEEES-------SSGGGGHH--HHHH----HE-EEEEEE
T ss_pred cc-cCcccEEEEeC-------CCHHHHHH--HHHH----HHhcCCceE
Confidence 22 36789998863 25688774 2322 37 788854
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=83.04 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..|||+||| |.+++.+|+.-...+|+++|- ++.+.++|+++++.|++. ++|++++++.-+ .++.+++|+||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDi--s~~al~~A~~N~~~~~l~-~~v~~~~~D~~~----~~~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDI--SLDAIEVAKSNAIKYEVT-DRIQIIHSNWFE----NIEKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHHHHHcCCc-cceeeeecchhh----hCcCCCccEEE
Confidence 4579999999 988887665422569999999 788888999999999997 899999886421 22346899999
Q ss_pred ccc
Q 044245 485 GEP 487 (694)
Q Consensus 485 sE~ 487 (694)
|.|
T Consensus 212 sNP 214 (506)
T PRK01544 212 SNP 214 (506)
T ss_pred ECC
Confidence 984
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.5e-05 Score=76.27 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=75.8
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-cCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-VDIDS 147 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~~l~~ 147 (694)
++|+||||.|.....+.+-.+ ++.-+|+|||.|+.+++..+++...+. .++.....|...-... .--++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~--------n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~ 143 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP--------NNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEG 143 (264)
T ss_pred hheeeccCCCcccchhhhcCC--------CCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcC
Confidence 799999999998888887654 223789999999999999988776543 2444333333322110 11236
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEE
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYG 193 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~ 193 (694)
.+|+|+.=..-+ .++.+-.+..+..+.++|+|||.++-+-.-.|.
T Consensus 144 svD~it~IFvLS-Ai~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 144 SVDIITLIFVLS-AIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred ccceEEEEEEEe-ccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 789887621111 234445556677778899999999877666553
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.5e-05 Score=70.19 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=51.9
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
++||||||.|..++.+++.++ ..+|+++|.++.+.+.++++++.|+++ ++++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----------~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----------EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----------CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999999875 358999999999999999999999986 68888866554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=75.40 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=78.0
Q ss_pred CChhHHHHHHHH-HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhH-HHHHHHHhccCCcccccEE
Q 044245 385 GDGEWRLSMVMA-MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKG-AQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 385 ~D~~r~~~y~~A-i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~-~~~~~~i~~~N~l~~~~i~ 461 (694)
-|+++...+.-. +...+..++|++||||||| |.-++-+++.| |+.|+++|++..-.+ .+++++++. .+ .++.
T Consensus 94 IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg---~~-~~~~ 168 (315)
T PF08003_consen 94 IDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLG---QD-PPVF 168 (315)
T ss_pred ecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhC---CC-ccEE
Confidence 355554433332 5555556789999999999 99999999996 999999999522121 123344442 22 3456
Q ss_pred EeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE------cceEEEEEEE
Q 044245 462 ILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM------PFKGILKACA 531 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~------P~~a~l~~~~ 531 (694)
.+.-.+|++.. .++.|+|+|=+..+. -.-|-..|. ..++ .|+|||.++ +......++|
T Consensus 169 ~lplgvE~Lp~----~~~FDtVF~MGVLYH--rr~Pl~~L~--~Lk~----~L~~gGeLvLETlvi~g~~~~~L~P 232 (315)
T PF08003_consen 169 ELPLGVEDLPN----LGAFDTVFSMGVLYH--RRSPLDHLK--QLKD----SLRPGGELVLETLVIDGDENTVLVP 232 (315)
T ss_pred EcCcchhhccc----cCCcCEEEEeeehhc--cCCHHHHHH--HHHH----hhCCCCEEEEEEeeecCCCceEEcc
Confidence 66545555543 367999998752221 112211221 3333 489999665 5555544444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=81.90 Aligned_cols=91 Identities=19% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.+.+.....++..|||+||| |.+++.+|+. +++|+++|. ++.+.+.|++.++.||+ ++|+++.++.++.-.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~--~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEV--VPESVEKAQQNAELNGI--ANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEc--CHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHH
Confidence 3334444443456789999999 9999999986 579999999 77777888999999998 479999998765421
Q ss_pred c-ccCCccccEEEcccccc
Q 044245 473 D-DTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 473 ~-~l~~~~vDvivsE~~~~ 490 (694)
. .....+.|+||..|-..
T Consensus 355 ~~~~~~~~~D~vi~dPPr~ 373 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK 373 (431)
T ss_pred HHHhcCCCCCEEEECcCCC
Confidence 1 01134689999987433
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=78.00 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=54.6
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
..|||+||| |.++..+++.+...+|+++|. ++.+.+.+++.++.|++. . +++.++..+ .+ .++.|+|||
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDi--s~~Al~~A~~nl~~n~l~-~--~~~~~D~~~----~~-~~~fDlIvs 267 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDV--SAAALESSRATLAANGLE-G--EVFASNVFS----DI-KGRFDMIIS 267 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-C--EEEEccccc----cc-CCCccEEEE
Confidence 369999999 999999888753468999999 777778889999999985 3 455543221 22 468999999
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
-|
T Consensus 268 NP 269 (342)
T PRK09489 268 NP 269 (342)
T ss_pred CC
Confidence 85
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00018 Score=78.39 Aligned_cols=89 Identities=18% Similarity=0.046 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
|+...+++.+... ++..|||+||| |.+++..|+.....+|+++|. ++.+.+.++++++.|+. +|++++++..
T Consensus 238 TE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDi--S~~ALe~AreNa~~~g~---rV~fi~gDl~ 310 (423)
T PRK14966 238 TEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDI--SPPALETARKNAADLGA---RVEFAHGSWF 310 (423)
T ss_pred HHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCC---cEEEEEcchh
Confidence 4445555544432 45689999999 999887776533679999999 78888889998888764 6899998653
Q ss_pred cccccccCCccccEEEccc
Q 044245 469 CLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~ 487 (694)
+.... ...++|+|||-|
T Consensus 311 e~~l~--~~~~FDLIVSNP 327 (423)
T PRK14966 311 DTDMP--SEGKWDIIVSNP 327 (423)
T ss_pred ccccc--cCCCccEEEECC
Confidence 32111 135799999985
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.1e-05 Score=76.15 Aligned_cols=113 Identities=13% Similarity=-0.003 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+++.+.+.....++..|||++|| |-++...++. |...+|++++. ++-+.+.+++-++..+. .+|++++++.+++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~--s~~ML~~a~~k~~~~~~--~~i~~v~~da~~l 110 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI--SPGMLEVARKKLKREGL--QNIEFVQGDAEDL 110 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES---HHHHHHHHHHHHHTT----SEEEEE-BTTB-
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC--CHHHHHHHHHHHHhhCC--CCeeEEEcCHHHh
Confidence 34444444445577899999999 9998877775 43359999999 66666677777777777 4899999998888
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
..+ .+.+|+|.+=- .. -.+-+.. . ..++ ..|.|||||++
T Consensus 111 p~~---d~sfD~v~~~f--gl-rn~~d~~--~--~l~E-~~RVLkPGG~l 149 (233)
T PF01209_consen 111 PFP---DNSFDAVTCSF--GL-RNFPDRE--R--ALRE-MYRVLKPGGRL 149 (233)
T ss_dssp -S----TT-EEEEEEES---G-GG-SSHH--H--HHHH-HHHHEEEEEEE
T ss_pred cCC---CCceeEEEHHh--hH-HhhCCHH--H--HHHH-HHHHcCCCeEE
Confidence 653 47899998642 11 1122211 0 1122 23479999976
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.9e-05 Score=78.95 Aligned_cols=82 Identities=6% Similarity=0.022 Sum_probs=62.3
Q ss_pred CCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEee-ccccccccccc-CCccc
Q 044245 406 QPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQ-KGKKCLTMDDT-QQKKV 480 (694)
Q Consensus 406 ~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~-~~~~~~~~~~l-~~~~v 480 (694)
+..|||||+| | |.+|++++.. ..+|+|+|- ++.|.+.|+++++.| +++ ++|+++. ....++-...+ +.++.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDI--d~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDI--DPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCC-CCEEEEEeC--CHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCce
Confidence 4689999999 5 7788888875 368999999 888889999999999 898 8999964 32223322111 24689
Q ss_pred cEEEcc-ccccC
Q 044245 481 DLLIGE-PYYFG 491 (694)
Q Consensus 481 DvivsE-~~~~~ 491 (694)
|+|||- |||..
T Consensus 191 DlivcNPPf~~s 202 (321)
T PRK11727 191 DATLCNPPFHAS 202 (321)
T ss_pred EEEEeCCCCcCc
Confidence 999999 68775
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=74.26 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=67.4
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
+.||||||| |.++..+|+..+..+|++++. ++.+.+.+++.++.+|++ ++|+++.++.++.. + +++.|+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~---~-~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP---F-PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCC-cceEEEecccccCC---C-CCCCCEeeh
Confidence 368999999 877766666533468999998 676667788888888998 89999987654331 2 357999998
Q ss_pred cccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 486 EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 486 E~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
--.+. .+-.|..+ . .++.++|+|||.++
T Consensus 74 ~~~l~---~~~~~~~~----l-~~~~~~LkpgG~l~ 101 (224)
T smart00828 74 FEVIH---HIKDKMDL----F-SNISRHLKDGGHLV 101 (224)
T ss_pred HHHHH---hCCCHHHH----H-HHHHHHcCCCCEEE
Confidence 53221 11222211 1 22334799999877
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=71.91 Aligned_cols=78 Identities=18% Similarity=0.057 Sum_probs=58.8
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..|||+||| |.++..+++.++ ..+|+++|. ++.+.+.+++.+..+++. ++++++.+..+++.. +...+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~---~~~~~ 122 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDF--SEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPF---PDNSF 122 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHHhhcccccc-cCeEEEecccccCCC---CCCCc
Confidence 3456789999999 988888888753 379999999 666656777777777776 689999887665432 24679
Q ss_pred cEEEcc
Q 044245 481 DLLIGE 486 (694)
Q Consensus 481 DvivsE 486 (694)
|+|++-
T Consensus 123 D~I~~~ 128 (239)
T PRK00216 123 DAVTIA 128 (239)
T ss_pred cEEEEe
Confidence 999863
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00025 Score=71.13 Aligned_cols=78 Identities=9% Similarity=-0.063 Sum_probs=57.8
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
....++..|||+|+| |.++.+.|+.+ .+|+++|. ++.+.+.+++.++.+++. +|+++.+...+.- ...++
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~--~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~---~~~~~ 144 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVER--IKTLQWEAKRRLKQLGLH--NVSVRHGDGWKGW---PAYAP 144 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeC--CHHHHHHHHHHHHHCCCC--ceEEEECCcccCC---CcCCC
Confidence 334467789999999 99888888874 48999999 566666778888888885 5999988653211 11257
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|++..
T Consensus 145 fD~I~~~~ 152 (212)
T PRK00312 145 FDRILVTA 152 (212)
T ss_pred cCEEEEcc
Confidence 99998864
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=70.70 Aligned_cols=104 Identities=20% Similarity=0.143 Sum_probs=69.1
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc-cccccCCCCC
Q 044245 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE-LEVGVDIDSR 148 (694)
Q Consensus 70 VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~-l~~~~~l~~~ 148 (694)
|.||||--|.|++.+.+.|. ..+|+|+|+++.-++.|+++++.+|+.++|++..+|-.+ +.. .+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----------~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~----~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----------APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP----GED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----------EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G----GG-
T ss_pred CceeccchhHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC----CCC
Confidence 68999999999999999986 468999999999999999999999999999999999544 321 123
Q ss_pred ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 149 ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 149 ~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
+|.||-.-||..+ +..++......+ +....+-.||....
T Consensus 67 ~d~ivIAGMGG~l-----I~~ILe~~~~~~-------~~~~~lILqP~~~~ 105 (205)
T PF04816_consen 67 VDTIVIAGMGGEL-----IIEILEAGPEKL-------SSAKRLILQPNTHA 105 (205)
T ss_dssp --EEEEEEE-HHH-----HHHHHHHTGGGG-------TT--EEEEEESS-H
T ss_pred CCEEEEecCCHHH-----HHHHHHhhHHHh-------ccCCeEEEeCCCCh
Confidence 8888876666322 333333322222 33445666777654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=78.96 Aligned_cols=108 Identities=6% Similarity=-0.083 Sum_probs=77.7
Q ss_pred cccChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 374 LALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 374 ~~~~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
+.+++...-+.|+..+..-|..+... ....+++.|||++|| |.+++.+|..| ++|+++|. ++.|.+.++++++.
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~-l~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~--~~~av~~a~~N~~~ 277 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQW-VREIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEI--ESEAIACAQQSAQM 277 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHH-HHhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEEC--CHHHHHHHHHHHHH
Confidence 34444455566666665555544432 222356789999999 99999999763 68999999 78888889999999
Q ss_pred CCcccccEEEeecccccccccccCCccccEEEcccccc
Q 044245 453 NCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 453 N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~ 490 (694)
|+++ +++++.+++++.... . .++.|+||..|=+.
T Consensus 278 ~~~~--~~~~~~~d~~~~~~~-~-~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 278 LGLD--NLSFAALDSAKFATA-Q-MSAPELVLVNPPRR 311 (374)
T ss_pred cCCC--cEEEEECCHHHHHHh-c-CCCCCEEEECCCCC
Confidence 9984 799999987665321 1 24589999996444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=72.67 Aligned_cols=104 Identities=26% Similarity=0.282 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..++||||+|.|-.+..++.... +|+|.|.|+.|....++ .|+ +++..+. +. +.+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~------------~v~aTE~S~~Mr~rL~~----kg~----~vl~~~~--w~---~~~ 149 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK------------EVYATEASPPMRWRLSK----KGF----TVLDIDD--WQ---QTD 149 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc------------eEEeecCCHHHHHHHHh----CCC----eEEehhh--hh---ccC
Confidence 46899999999999999988874 89999999999655543 455 3332221 21 123
Q ss_pred CCccEEEE-ccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 147 SRADILVS-EILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 147 ~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
.+||+|.| |+++ .-...-.++..+++.|+|+|+++-..+--|-.-||..
T Consensus 150 ~~fDvIscLNvLD----Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~ 199 (265)
T PF05219_consen 150 FKFDVISCLNVLD----RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFG 199 (265)
T ss_pred CceEEEeehhhhh----ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcC
Confidence 58999987 3333 2223446777777799999998876665555556654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.6e-05 Score=75.39 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=61.7
Q ss_pred ccChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC
Q 044245 375 ALPPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN 453 (694)
Q Consensus 375 ~~~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N 453 (694)
.+.+.|+..+.|..|++.=. -..-...+.|+.|||+||| ||||--.||.| +.|.++++ ++.+.+.|++=.+.+
T Consensus 61 ~mn~~Rl~fi~d~~~~~v~~--~~p~~k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~--s~~~V~vA~~h~~~d 134 (282)
T KOG1270|consen 61 SMNQTRLPFIRDDLRNRVNN--HAPGSKPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDA--SDDMVEVANEHKKMD 134 (282)
T ss_pred hccchhhhHHHHHHHhcccc--cCCCccccCCceEEEeccCccccchhhHhhC--CeeEeecc--cHHHHHHHHHhhhcC
Confidence 45566666666666654200 0000012235779999999 99999999997 69999999 676666765543333
Q ss_pred Ccccc----cEEEeecccccccccccCCccccEEEc
Q 044245 454 CFSID----RVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 454 ~l~~~----~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
-..+. ||+.....+|+.+ ++.|+||+
T Consensus 135 P~~~~~~~y~l~~~~~~~E~~~------~~fDaVvc 164 (282)
T KOG1270|consen 135 PVLEGAIAYRLEYEDTDVEGLT------GKFDAVVC 164 (282)
T ss_pred chhccccceeeehhhcchhhcc------cccceeee
Confidence 32212 3555555544443 55998887
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=72.88 Aligned_cols=105 Identities=8% Similarity=0.045 Sum_probs=66.0
Q ss_pred CCcEEEecCC-chHHHHHHHcC---CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 406 QPLCVVADDS-VFLTICVARLS---KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g---~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
+..|||+|+| |.|++.+|+.- +..+|+++|- .+.+.++|+++ + .++.+++++..... + .+++|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEI--D~~Al~~Ar~n-----~--~~~~~~~~D~~~~~---~-~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVEL--NHTYYKLGKRI-----V--PEATWINADALTTE---F-DTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEEC--CHHHHHHHHhh-----c--cCCEEEEcchhccc---c-cCCcc
Confidence 5689999999 99999888741 1458999999 77776666543 2 24778887654322 2 36899
Q ss_pred EEEcc-ccccCCcc--ccCc--chhhHHHHHhhcccccCCCceEEcce
Q 044245 482 LLIGE-PYYFGNDG--MLPW--QNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 482 vivsE-~~~~~~e~--~l~w--~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+|||- ||+-.-.. .-.. ..+.+...+.+. +++++|+.|+|..
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~-~Ll~~G~~ILP~~ 163 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERAS-QIARQGTFIIPQM 163 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHH-HHcCCCEEEeCcc
Confidence 99999 57632100 0000 012222333333 3889999988874
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.7e-05 Score=73.87 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 391 LSMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 391 ~~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
+.-+.||.+-+.. .+|++|||+=+| |.|++-|..-| |++|+.||. ++.+.++++++++.-+++ ++++++.+++
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~--~~~a~~~i~~N~~~l~~~-~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEK--NRKAIKIIKKNLEKLGLE-DKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES---HHHHHHHHHHHHHHT-G-GGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEEC--CHHHHHHHHHHHHHhCCC-cceeeeccCH
Confidence 3445555555443 478999999999 99999999986 999999999 788888999999999997 8899998864
Q ss_pred cccccccc--CCccccEEEccc-cccCCccc-cCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDT--QQKKVDLLIGEP-YYFGNDGM-LPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l--~~~~vDvivsE~-~~~~~e~~-l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
...-. .+ ..++.|+|...| |... . ++ ..|.. ... ..||+++|.|+
T Consensus 102 ~~~l~-~~~~~~~~fDiIflDPPY~~~---~~~~-~~l~~-l~~---~~~l~~~~~ii 150 (183)
T PF03602_consen 102 FKFLL-KLAKKGEKFDIIFLDPPYAKG---LYYE-ELLEL-LAE---NNLLNEDGLII 150 (183)
T ss_dssp HHHHH-HHHHCTS-EEEEEE--STTSC---HHHH-HHHHH-HHH---TTSEEEEEEEE
T ss_pred HHHHH-hhcccCCCceEEEECCCcccc---hHHH-HHHHH-HHH---CCCCCCCEEEE
Confidence 32211 11 357899999995 5442 2 12 23321 122 24788887655
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00031 Score=72.23 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=58.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.++.|||+||| |.+++.+|+.....+|+++|. ++.+.+.+++.++.+++. +++++.++..+. ++.++.|+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~----~~~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDI--SPEALAVARKNAARLGLD--NVTFLQSDWFEP----LPGGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--eEEEEECchhcc----CcCCceeEE
Confidence 34589999999 888877777633569999999 777777888889889984 799999875431 234789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
|+-|
T Consensus 159 i~np 162 (251)
T TIGR03534 159 VSNP 162 (251)
T ss_pred EECC
Confidence 9985
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=72.74 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc-ccccccccCCccccEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK-KCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~-~~~~~~~l~~~~vDvi 483 (694)
+.+|||+||| |.++...|+.....+|+++|. ++.+.+.+++.++.|++. +++++.+.. +.+.. .++++.+|.|
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~--s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~~-~~~~~~~D~V 115 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEV--HEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLLD-MFPDGSLDRI 115 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEe--chHHHHHHHHHHHHcCCC--CEEEEecCHHHHHHH-HcCccccceE
Confidence 4689999999 877766665432468999999 666666777778888884 699999987 55531 1334679999
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
++-
T Consensus 116 ~~~ 118 (202)
T PRK00121 116 YLN 118 (202)
T ss_pred EEE
Confidence 873
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00062 Score=69.74 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+||||.||.|.--+-+....+.. ..+|.-.|.|+..++..++.++.+|+++.+++.++|..+..--..+.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~--------~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPER--------PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCC--------CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccC
Confidence 4789999999998877777766521 25899999999999999999999999987799999987653212234
Q ss_pred CCccEEEE-ccccccccCC-ChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVS-EILDSELLGE-GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvs-e~~~~~l~~e-~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++++++. -+++ ++.+ .++...+.-+...+.|||.+|
T Consensus 208 p~P~l~iVsGL~E--lF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 208 PAPTLAIVSGLYE--LFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred CCCCEEEEecchh--hCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 56787765 2222 2233 234555556667899999987
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00028 Score=75.79 Aligned_cols=85 Identities=16% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
++.+.....++..|||+||| |.+.+-||..| .+|+++|. ++.+.+.++++++.+|+. + ++++.++.+++..
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di--~~~~~~~a~~nl~~~g~~-~-i~~~~~D~~~l~~-- 244 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDI--DWKMVAGARINLEHYGIE-D-FFVKRGDATKLPL-- 244 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcC--CHHHHHHHHHHHHHhCCC-C-CeEEecchhcCCc--
Confidence 44433334467899999999 87778888874 58999999 666666778889999997 5 8899987776543
Q ss_pred cCCccccEEEccccc
Q 044245 475 TQQKKVDLLIGEPYY 489 (694)
Q Consensus 475 l~~~~vDvivsE~~~ 489 (694)
..+++|+||+.|=|
T Consensus 245 -~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 245 -SSESVDAIATDPPY 258 (329)
T ss_pred -ccCCCCEEEECCCC
Confidence 24689999999533
|
This family is found exclusively in the Archaea. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=74.05 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++..|||||+|+|.++..+++.+. +|+++|.++.+++..++... ...+++++++|..++....
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~------------~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGK------------RVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSS------------EEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccC------------cceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 34789999999999999999999974 99999999999999887654 3358999999999887544
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.+..+...|++++..
T Consensus 93 ~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY 107 (262)
T ss_dssp HCSSSEEEEEEEETG
T ss_pred hhcCCceEEEEEecc
Confidence 334467789988654
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=66.40 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc--ccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE--VGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~--~~~ 143 (694)
.|..||++|.|||.++....++|- +...++++|.|++......+.. +.++++++|..++. ++.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv---------~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV---------RPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC---------CccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh
Confidence 477999999999999999999986 3568999999999987776532 35778999998876 433
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.....||.|||.+.--.+ .-..--.+++.....|..||.++
T Consensus 113 ~~gq~~D~viS~lPll~~-P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 113 HKGQFFDSVISGLPLLNF-PMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred cCCCeeeeEEeccccccC-cHHHHHHHHHHHHHhcCCCCeEE
Confidence 344579999985422111 11111134444445677788765
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=74.25 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
+.+.+.+.......++..|||+||| |.+++..|+.....+|+++|. ++.+.+.+++.++ ++.. ++++++.++..+
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDi--s~~~l~~a~~n~~-~~~~-~~i~~~~~d~~~ 169 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDI--SPEALAVARRNAK-HGLG-ARVEFLQGDWFE 169 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHH-hCCC-CcEEEEEccccC
Confidence 3344444333333456789999999 888888888744679999999 7777778887776 4444 689999885421
Q ss_pred ccccccCCccccEEEccc
Q 044245 470 LTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~ 487 (694)
.+...++|+||+-|
T Consensus 170 ----~~~~~~fD~Iv~np 183 (275)
T PRK09328 170 ----PLPGGRFDLIVSNP 183 (275)
T ss_pred ----cCCCCceeEEEECC
Confidence 12236899999974
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00034 Score=70.69 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=68.3
Q ss_pred cCCC--EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc------C--CCCcEEEEec
Q 044245 65 TKSC--HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN------G--MGRNIKVINK 134 (694)
Q Consensus 65 ~~~~--~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n------g--l~~~I~vi~~ 134 (694)
.++. +|||+-+|+|..++.++.+|+ +|+++|.|+.++...+.+++.. + +..+++++++
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~------------~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC------------RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4565 899999999999999999986 6999999999999999998873 2 2358999999
Q ss_pred cccccccccCCCCCccEEEEccccccc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSEL 161 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l 161 (694)
+..++.. .....||+|..+|+...-
T Consensus 153 da~~~L~--~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 153 SSLTALT--DITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cHHHHHh--hCCCCCcEEEECCCCCCC
Confidence 9877642 233579999999988543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=74.02 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCCcEEEecCC-chHHHHHHHc--CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARL--SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~--g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
++..||||||| |.++...++. ....+|+++|. ++.+.+.+++.+..++.. ++|+++.+..+++. ....|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~--S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~D 127 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN--SPAMIERCRRHIDAYKAP-TPVDVIEGDIRDIA-----IENAS 127 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeC--CHHHHHHHHHHHHhcCCC-CCeEEEeCChhhCC-----CCCCC
Confidence 56789999999 8877666652 12368999999 777777888888888886 78999998766543 24579
Q ss_pred EEEcc
Q 044245 482 LLIGE 486 (694)
Q Consensus 482 vivsE 486 (694)
+||+-
T Consensus 128 ~vv~~ 132 (247)
T PRK15451 128 MVVLN 132 (247)
T ss_pred EEehh
Confidence 88874
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00033 Score=72.09 Aligned_cols=115 Identities=11% Similarity=0.052 Sum_probs=69.1
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
...|||+||| |.+++.+++..+..+|+++|. ++.+.+++++ | + .+++++.++..+... .++.|+||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDi--sp~al~~Ar~----n-~--~~v~~v~~D~~e~~~----~~kFDlII 131 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVEL--NPEFARIGKR----L-L--PEAEWITSDVFEFES----NEKFDVVI 131 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHH----h-C--cCCEEEECchhhhcc----cCCCcEEE
Confidence 3579999999 999888877533579999999 6666555544 2 3 357888887654431 36799999
Q ss_pred ccc-cccCCccccCcchhhHHHH-----Hhh--cccccCCCc-eEEcceEEEEEEEccChhhh
Q 044245 485 GEP-YYFGNDGMLPWQNLRFWKE-----RSK--LDPVLSKEV-IIMPFKGILKACAIFCPDIW 538 (694)
Q Consensus 485 sE~-~~~~~e~~l~w~~l~f~~~-----r~~--~~~~L~p~g-~i~P~~a~l~~~~v~~~~l~ 538 (694)
+-| |+.. ..-.+... +.|. ++. +++++++.+ .|.|+. ..+.+ .+.+.++
T Consensus 132 sNPPF~~l--~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G-~~~~~-yss~~~y 189 (279)
T PHA03411 132 SNPPFGKI--NTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTG-SAGFA-YSGRPYY 189 (279)
T ss_pred EcCCcccc--Cchhhhhh-hhhccCccccccccHHHHHhhhHheecCCc-eEEEE-Eeccccc
Confidence 984 5432 22222222 1121 111 134567766 444554 45444 6665554
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00037 Score=67.30 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=57.9
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
.+.....++..|||+|+| |.++..+++. +.+|+++|. ++.+.+.+++.+.. . +++++++++..++...
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~--~~~~~~~~~~~~~~---~-~~v~ii~~D~~~~~~~--- 74 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEI--DPRLAPRLREKFAA---A-DNLTVIHGDALKFDLP--- 74 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEEC--CHHHHHHHHHHhcc---C-CCEEEEECchhcCCcc---
Confidence 333333456789999999 9999998887 368999999 66555666665533 2 5899999987766532
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
..+.|.|+|.+
T Consensus 75 ~~~~d~vi~n~ 85 (169)
T smart00650 75 KLQPYKVVGNL 85 (169)
T ss_pred ccCCCEEEECC
Confidence 23589999985
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=71.33 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=60.3
Q ss_pred CCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc-cc-cccccCCcc
Q 044245 404 RVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK-CL-TMDDTQQKK 479 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~-~~-~~~~l~~~~ 479 (694)
+++..++|+||| |-+|+..+. .+ ...|+|++. ++.|..+|.++++.++++ ++|.|++-.-| +- ..-.+..++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~--S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDV--SKAAIKLAKENAQRLKLS-GRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCC-CceEEEEec--cHHHHHHHHHHHHHHhhc-CceEEEecccccccccccccccCc
Confidence 345589999999 766655544 55 789999999 888888999999999998 99999976322 11 111233578
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|||.|
T Consensus 223 ~dllvsNP 230 (328)
T KOG2904|consen 223 IDLLVSNP 230 (328)
T ss_pred eeEEecCC
Confidence 99999985
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=76.47 Aligned_cols=77 Identities=8% Similarity=-0.064 Sum_probs=62.9
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.+++.+|+.| ++|+++|. ++.+.+.|++.++.||+ ++|+++.++.+++... . .++.|+
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~--s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~-~-~~~~D~ 243 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG--MQLTGIEI--SAEAIACAKQSAAELGL--TNVQFQALDSTQFATA-Q-GEVPDL 243 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC--CEEEEEeC--CHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHh-c-CCCCeE
Confidence 356789999999 99999999974 69999999 77777889999999999 4799999987765321 1 246899
Q ss_pred EEcccc
Q 044245 483 LIGEPY 488 (694)
Q Consensus 483 ivsE~~ 488 (694)
||..|=
T Consensus 244 Vv~dPP 249 (315)
T PRK03522 244 VLVNPP 249 (315)
T ss_pred EEECCC
Confidence 999863
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00042 Score=68.06 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=78.8
Q ss_pred HHHHHHHhhccCCCE-EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKMVTKSCH-VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~-VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
...+++++.+.+... |||||||||-.+..+|++.+ ...-.-.|.++......+..+...++++--.-+.
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP----------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~ 82 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP----------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA 82 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC----------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE
Confidence 455667777776665 99999999999999999986 4556677888888877888888777753222222
Q ss_pred cccccccccc-----CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGV-----DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~-----~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
-|..+-..+. ...+.||.|++--+-+ +......+.++....++|++||.++
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lH-I~p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLH-ISPWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHH-hcCHHHHHHHHHHHHHhCCCCCEEE
Confidence 2333221111 1235899999832221 1122334556667778999999987
|
The function of this family is unknown. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00029 Score=70.37 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
+.+.....+|..||+||+| |.++-++|+..|. .+|+++|. .+...+.|++.++..++ ++|+++.++...--.
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~--~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~-- 137 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVER--DPELAERARRNLARLGI--DNVEVVVGDGSEGWP-- 137 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEES--BHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTG--
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECc--cHHHHHHHHHHHHHhcc--CceeEEEcchhhccc--
Confidence 3344445688899999999 9888887776333 36999999 66666778888998888 489999886432211
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
...+.|.|+...
T Consensus 138 -~~apfD~I~v~~ 149 (209)
T PF01135_consen 138 -EEAPFDRIIVTA 149 (209)
T ss_dssp -GG-SEEEEEESS
T ss_pred -cCCCcCEEEEee
Confidence 135689999985
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00041 Score=77.74 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=65.4
Q ss_pred HhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 400 ALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 400 ~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
.....++..|||+|+| |-.++.+|+. ++..+|+++|. ++.+.+.+++.++.+|+. + |+++.++..++.. .+ +
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi--~~~~l~~~~~n~~~~g~~-~-v~~~~~D~~~~~~-~~-~ 318 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDI--HEHKLKLIEENAKRLGLT-N-IETKALDARKVHE-KF-A 318 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC-e-EEEEeCCcccccc-hh-c
Confidence 3333467789999999 8888777765 33579999999 666667788899999996 4 9999987765421 22 2
Q ss_pred ccccEEEccccccCCcccc
Q 044245 478 KKVDLLIGEPYYFGNDGML 496 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l 496 (694)
+++|+|++.+-+.+ .|++
T Consensus 319 ~~fD~Vl~D~Pcsg-~G~~ 336 (444)
T PRK14902 319 EKFDKILVDAPCSG-LGVI 336 (444)
T ss_pred ccCCEEEEcCCCCC-Ceee
Confidence 67999999864443 2443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00051 Score=73.16 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=57.4
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..|||+|+| |.++..+|+..+. .+|+++|. ++.+.+.+++.++.+|+ ++|+++.++..+... ...
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDi--s~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~---~~~ 148 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY--SRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVP---EFA 148 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHHHHcCC--CcEEEEeCChhhccc---ccC
Confidence 334467899999999 9888877775332 47999999 66666678888888998 478888886543321 124
Q ss_pred cccEEEcc
Q 044245 479 KVDLLIGE 486 (694)
Q Consensus 479 ~vDvivsE 486 (694)
..|+|+.-
T Consensus 149 ~fD~Ii~~ 156 (322)
T PRK13943 149 PYDVIFVT 156 (322)
T ss_pred CccEEEEC
Confidence 68999875
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=69.48 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=57.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc-EEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR-VEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~-i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+++.|||+||| |.+++.+|+.| .+|+++|. ++.+.+.+++.++.|++. ++ ++++.++..+ .+..+++|+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~--s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~----~~~~~~~d~ 93 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDI--NPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE----PFRGDKFDV 93 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc--ceEEEEEC--CHHHHHHHHHHHHHcCCC-CcceEEEeccccc----cccccCceE
Confidence 56789999999 99998888874 79999999 676667788888888886 54 8887765322 222347999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++.+
T Consensus 94 vi~n~ 98 (188)
T PRK14968 94 ILFNP 98 (188)
T ss_pred EEECC
Confidence 99974
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=71.93 Aligned_cols=75 Identities=9% Similarity=-0.061 Sum_probs=53.9
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
..|||+||| |.+++.+|+..+..+|+++|. ++.+.+.++++++.||. ++++++..+.-...+ .+++|+||+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi--s~~al~~A~~N~~~~~~-----~~~~~D~~~~l~~~~-~~~fDlVv~ 159 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADI--DPAAVRCARRNLADAGG-----TVHEGDLYDALPTAL-RGRVDILAA 159 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCC-----EEEEeechhhcchhc-CCCEeEEEE
Confidence 479999999 999988776533468999999 78787888888887763 566665433211112 257999999
Q ss_pred cc-cc
Q 044245 486 EP-YY 489 (694)
Q Consensus 486 E~-~~ 489 (694)
-| |.
T Consensus 160 NPPy~ 164 (251)
T TIGR03704 160 NAPYV 164 (251)
T ss_pred CCCCC
Confidence 85 43
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00051 Score=70.69 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=83.6
Q ss_pred HHHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCCC-
Q 044245 54 RAYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGMG- 126 (694)
Q Consensus 54 ~~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl~- 126 (694)
-.|.+.|... ....++||-||.|-|.....+.|.- .+|+-||+++.+++.+++.... .++.
T Consensus 56 fiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~------------~~v~mVeID~~Vv~~~k~~lP~~~~~~~D 123 (262)
T PRK00536 56 HIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD------------THVDFVQADEKILDSFISFFPHFHEVKNN 123 (262)
T ss_pred hhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC------------CeeEEEECCHHHHHHHHHHCHHHHHhhcC
Confidence 3566666542 2345899999999999999999883 3999999999999999995432 1233
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEE
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQL 195 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ 195 (694)
.|++++.. +. ....++||+||.+.+. -+.+.+..++.|+|||+++-+....+..+
T Consensus 124 pRv~l~~~----~~--~~~~~~fDVIIvDs~~--------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 124 KNFTHAKQ----LL--DLDIKKYDLIICLQEP--------DIHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred CCEEEeeh----hh--hccCCcCCEEEEcCCC--------ChHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 48888762 11 1112689999987432 13444567789999999999988877553
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00056 Score=69.24 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
..+++++.......+|..||||+|| |-+++..|+..|..+|++++- ++-+...+++-.+.-|.. + |++++++.|+
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~--s~~ML~~a~~k~~~~~~~-~-i~fv~~dAe~ 112 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDI--SESMLEVAREKLKKKGVQ-N-VEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEEC--CHHHHHHHHHHhhccCcc-c-eEEEEechhh
Confidence 3456666555544478899999999 999999999755889999999 555556676666666665 5 9999999998
Q ss_pred ccccccCCccccEEEc
Q 044245 470 LTMDDTQQKKVDLLIG 485 (694)
Q Consensus 470 ~~~~~l~~~~vDvivs 485 (694)
|..+ ....|++..
T Consensus 113 LPf~---D~sFD~vt~ 125 (238)
T COG2226 113 LPFP---DNSFDAVTI 125 (238)
T ss_pred CCCC---CCccCEEEe
Confidence 8754 467887755
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=80.56 Aligned_cols=95 Identities=16% Similarity=0.006 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
++...+.+.+.....++..|||+||| |.+++.+|+.+ ++|+++|. ++.+.+.|++.++.||++ +++++.++.+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~--s~~al~~A~~n~~~~~~~--~v~~~~~d~~ 355 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEG--VEAMVERARENARRNGLD--NVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeC--CHHHHHHHHHHHHHcCCC--ceEEEEeChH
Confidence 33333444444444467799999999 99999999873 69999999 777778889999999984 6999999876
Q ss_pred ccccc-ccCCccccEEEcccccc
Q 044245 469 CLTMD-DTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 469 ~~~~~-~l~~~~vDvivsE~~~~ 490 (694)
+.... .+..++.|+||+.|=+.
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRA 378 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCc
Confidence 53211 12235689999996444
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00021 Score=77.41 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc-c
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL-T 471 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~-~ 471 (694)
|+++.+.. +|+.||++=+= |--|+.||+.| |++|++|+. |..+.+.++++++-||++.+++.+|.+++=+. .
T Consensus 209 R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~--S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 209 RRALGELA---AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDL--SKRALEWARENAELNGLDGDRHRFIVGDVFKWLR 282 (393)
T ss_pred HHHHhhhc---cCCeEEEecccCcHHHHHHHhcC-CCceEEEec--cHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH
Confidence 34455544 47899997544 77899999986 999999999 88888999999999999768899998865322 1
Q ss_pred ccccCCccccEEEccc-cccCCccccCcchhhHH-HHHhhcccccCCCceEEcceEE
Q 044245 472 MDDTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFW-KERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~-~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
..+-.+++.|+||-.| -|.-...++ |++.+-. -.-+....+|+|||+++=+.+.
T Consensus 283 ~~~~~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 283 KAERRGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHhcCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 1111257899999995 343323455 5654311 1111113579999988766554
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00017 Score=61.59 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=59.4
Q ss_pred EEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcccc
Q 044245 410 VVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPY 488 (694)
Q Consensus 410 ldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~ 488 (694)
||+|+| |..+-+.++.+ ..+|+++|. ++.+.+.+++..+. ..+.++.+..+++.. +.+.+|+|++--.
T Consensus 1 LdiG~G~G~~~~~l~~~~-~~~v~~~D~--~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~---~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG-GASVTGIDI--SEEMLEQARKRLKN-----EGVSFRQGDAEDLPF---PDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTT-TCEEEEEES---HHHHHHHHHHTTT-----STEEEEESBTTSSSS----TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhcc-CCEEEEEeC--CHHHHHHHHhcccc-----cCchheeehHHhCcc---ccccccccccccc
Confidence 799999 88888887874 789999999 66555566666554 345578877776643 4688999999753
Q ss_pred ccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 489 YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 489 ~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.. ++ .... +.++ ..|.|||||.++
T Consensus 70 ~~~----~~--~~~~-~l~e-~~rvLk~gG~l~ 94 (95)
T PF08241_consen 70 LHH----LE--DPEA-ALRE-IYRVLKPGGRLV 94 (95)
T ss_dssp GGG----SS--HHHH-HHHH-HHHHEEEEEEEE
T ss_pred eee----cc--CHHH-HHHH-HHHHcCcCeEEe
Confidence 321 11 2211 2222 345799999764
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=69.53 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
|+.-+...+....=..++++||| |.|+...|.. ..++.+++. ++.|.+.|++-+ .++ ..|++++..+.+.
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDi--s~~Al~~Ar~Rl--~~~--~~V~~~~~dvp~~- 101 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDI--SPRALARARERL--AGL--PHVEWIQADVPEF- 101 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES---HHHHHHHHHHT--TT---SSEEEEES-TTT--
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHh--hCceEEEeC--CHHHHHHHHHhc--CCC--CCeEEEECcCCCC-
Confidence 44445443432222578999999 9998877776 579999999 777766666544 345 4799999865433
Q ss_pred ccccCCccccEE-Eccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEcceE
Q 044245 472 MDDTQQKKVDLL-IGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKG 525 (694)
Q Consensus 472 ~~~l~~~~vDvi-vsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a 525 (694)
.+.++.|+| +||. ||+. +.+.|. .+.+++...|+|||.++=.++
T Consensus 102 ---~P~~~FDLIV~SEVlYYL~-----~~~~L~--~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 102 ---WPEGRFDLIVLSEVLYYLD-----DAEDLR--AALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -----SS-EEEEEEES-GGGSS-----SHHHHH--HHHHHHHHTEEEEEEEEEEEE
T ss_pred ---CCCCCeeEEEEehHhHcCC-----CHHHHH--HHHHHHHHHhCCCCEEEEEEe
Confidence 346788955 5685 4542 112232 223333446999997765544
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00044 Score=71.72 Aligned_cols=115 Identities=7% Similarity=-0.023 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+...+.+.. +.+.||+||+| |.-++.+|++ +...+|+++|. .+...++|++.++.+|++ ++|+++.|...+.
T Consensus 109 lL~~L~~~~---~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~--d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~ 182 (278)
T PLN02476 109 LLAMLVQIL---GAERCIEVGVYTGYSSLAVALVLPESGCLVACER--DSNSLEVAKRYYELAGVS-HKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHhc---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHH
Confidence 344444443 46799999999 9999988885 21347999999 777778899999999998 9999999987543
Q ss_pred ccccc----CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceE
Q 044245 471 TMDDT----QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKG 525 (694)
Q Consensus 471 ~~~~l----~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a 525 (694)
-. .+ ..++.|.|+-..--. .... |.... .++|+|||+|+=+-.
T Consensus 183 L~-~l~~~~~~~~FD~VFIDa~K~---~Y~~-------y~e~~-l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LK-SMIQNGEGSSYDFAFVDADKR---MYQD-------YFELL-LQLVRVGGVIVMDNV 229 (278)
T ss_pred HH-HHHhcccCCCCCEEEECCCHH---HHHH-------HHHHH-HHhcCCCcEEEEecC
Confidence 21 11 124688887764100 1111 22222 236999998775533
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=3e-05 Score=71.83 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=79.6
Q ss_pred CCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG--RNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~--~~I~vi~~~~~~l~~~ 142 (694)
.|..||++|.| +|+.++|+|.... ...|...|-|+..++..++++..|..+ .++.++.-....-..
T Consensus 29 rg~~ilelgggft~laglmia~~a~----------~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs- 97 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP----------DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS- 97 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC----------CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH-
Confidence 36789999999 7899999887754 578999999999999999998887332 234333322221110
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE---cCceE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV---PCRVT 190 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii---P~~~~ 190 (694)
.....+||+|++. .+++.+..-..+.+.+.++|+|.|+.+ |.|+.
T Consensus 98 q~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 98 QQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred HHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 1122489999985 566666677788999999999998743 66654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00049 Score=71.48 Aligned_cols=113 Identities=10% Similarity=0.031 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+-..+|.. +...++..||||||| |.++...|+.. ..+|++++. ++.+...+++.... . ++|+++.+..++.
T Consensus 40 ~~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~--s~~~~~~a~~~~~~---~-~~i~~~~~D~~~~ 111 (263)
T PTZ00098 40 ATTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDI--CEKMVNIAKLRNSD---K-NKIEFEANDILKK 111 (263)
T ss_pred HHHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEEC--CHHHHHHHHHHcCc---C-CceEEEECCcccC
Confidence 33444444 344467899999999 87777666642 248999999 66554555544332 3 6788888765533
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. ++.+..|+|++-..+.. ++.+... ..-....++|||||.++
T Consensus 112 ~---~~~~~FD~V~s~~~l~h----~~~~d~~--~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 112 D---FPENTFDMIYSRDAILH----LSYADKK--KLFEKCYKWLKPNGILL 153 (263)
T ss_pred C---CCCCCeEEEEEhhhHHh----CCHHHHH--HHHHHHHHHcCCCcEEE
Confidence 2 33468999999531111 1101110 11112234799999876
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00027 Score=67.70 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=54.7
Q ss_pred EEEcCCHHHHHHHHHHHHHc--CCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC
Q 044245 104 TACESYLPMVKLMKKVLHVN--GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181 (694)
Q Consensus 104 ~avE~s~~~~~~A~~~~~~n--gl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~ 181 (694)
+|+|.|++|++.|+++.+.. +...+|+++.++..+++.+ ++.||+|++.. .+-+-.-...+++.+.+.|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD---DCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC---CCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcC
Confidence 48999999999998776532 2234799999999988753 36899999842 1211122455666777899999
Q ss_pred CeEE
Q 044245 182 PLTV 185 (694)
Q Consensus 182 G~ii 185 (694)
|.++
T Consensus 75 G~l~ 78 (160)
T PLN02232 75 SRVS 78 (160)
T ss_pred eEEE
Confidence 9986
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00067 Score=63.46 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=58.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEeccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--MGRNIKVINKRSDELEVG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l~~~I~vi~~~~~~l~~~ 142 (694)
.+...|+|+|||.|.|+..++...... .+..+|+++|.++...+.+++..+..+ +..++....++..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS------SPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS- 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc------CCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-
Confidence 346899999999999999999832100 024799999999999999999998877 54567776666554321
Q ss_pred cCCCCCccEEEE
Q 044245 143 VDIDSRADILVS 154 (694)
Q Consensus 143 ~~l~~~~DlIvs 154 (694)
....+++++
T Consensus 97 ---~~~~~~~vg 105 (141)
T PF13679_consen 97 ---SDPPDILVG 105 (141)
T ss_pred ---cCCCeEEEE
Confidence 245667665
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00043 Score=68.05 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=86.9
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
.++...+..+.++.||||--|.|+.++.+.+. ...+++.|+++..++.|.++++++++.++|++..+|..
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~----------~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl 77 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNP----------ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL 77 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCC----------cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc
Confidence 44566677788899999999999999999885 56899999999999999999999999999999999874
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
..- .....+|+|+-.-||..+ +..+ |..|...+|.--..-.||...+
T Consensus 78 ~~l---~~~d~~d~ivIAGMGG~l-----I~~I-------Lee~~~~l~~~~rlILQPn~~~ 124 (226)
T COG2384 78 AVL---ELEDEIDVIVIAGMGGTL-----IREI-------LEEGKEKLKGVERLILQPNIHT 124 (226)
T ss_pred ccc---CccCCcCEEEEeCCcHHH-----HHHH-------HHHhhhhhcCcceEEECCCCCH
Confidence 321 222479988876555322 2233 3334445555555666776655
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=65.21 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=70.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+||-+|+.+|.---.++.-.. +.+.|||||.++...+-.-..++.. .||--|-+|++.-....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg---------~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG---------PDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT---------TTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccC---------CCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh
Confidence 56789999999999988777777654 3579999999997655544444443 36777778887644333
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+-+.+|+|+++.-. .+....+..-.+.+|++||.++
T Consensus 139 ~lv~~VDvI~~DVaQ-----p~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQ-----PDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp TTS--EEEEEEE-SS-----TTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccEEEecCCC-----hHHHHHHHHHHHhhccCCcEEE
Confidence 345689999986432 3445556666667999999876
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00091 Score=64.77 Aligned_cols=127 Identities=14% Similarity=0.083 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 390 RLSMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
++.-+.||.+-+.. +.|++|||+=+| |.|++-|+.-| |++|+.||. +..+.++++++++.-++. .+.+++..+
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~--~~~a~~~l~~N~~~l~~~-~~~~~~~~d 101 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEK--DRKAVKILKENLKALGLE-GEARVLRND 101 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEec--CHHHHHHHHHHHHHhCCc-cceEEEeec
Confidence 33445666666553 678999999999 99999999996 999999999 778888899999998887 889999987
Q ss_pred cccccccccCC-ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 467 KKCLTMDDTQQ-KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 467 ~~~~~~~~l~~-~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
+... +..+.. +..|+|...|=|. .++++ ..+.. .+.. -..||+|+|.|+=.+..
T Consensus 102 a~~~-L~~~~~~~~FDlVflDPPy~--~~l~~-~~~~~-~~~~-~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 102 ALRA-LKQLGTREPFDLVFLDPPYA--KGLLD-KELAL-LLLE-ENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHH-HHhcCCCCcccEEEeCCCCc--cchhh-HHHHH-HHHH-hcCCcCCCcEEEEEeCC
Confidence 7633 112221 2499999996444 25554 22211 1111 12489999977655443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.8e-05 Score=72.64 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc----ccc
Q 044245 387 GEWRLSMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS----IDR 459 (694)
Q Consensus 387 ~~r~~~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~----~~~ 459 (694)
+.+++-|..|+.+...- .+|.+|||.=+| |.-+..|++.| |.+|+.+|- .+.-- ++++-|-.| +-.
T Consensus 114 t~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEk--dp~VL----eLa~lNPwSr~l~~~~ 186 (287)
T COG2521 114 TKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEK--DPNVL----ELAKLNPWSRELFEIA 186 (287)
T ss_pred ccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEee--CCCeE----EeeccCCCCccccccc
Confidence 44566788888776433 358899998888 99999999997 999999998 44422 245667665 246
Q ss_pred EEEeecccccccccccCCccccEEEccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 460 VEILQKGKKCLTMDDTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|++|.|++.++-. +++.+.+|+||-.| =|.. -|=|= .+.|... +-|.|+|||++|=
T Consensus 187 i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~-AgeLY--seefY~E---l~RiLkrgGrlFH 243 (287)
T COG2521 187 IKIILGDAYEVVK-DFDDESFDAIIHDPPRFSL-AGELY--SEEFYRE---LYRILKRGGRLFH 243 (287)
T ss_pred cEEecccHHHHHh-cCCccccceEeeCCCccch-hhhHh--HHHHHHH---HHHHcCcCCcEEE
Confidence 8999998877643 45678899999996 2222 11000 1222111 1247999999874
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00036 Score=76.15 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..|||+++| |++++.+|+..++.+|+++|. ++.|.++++++++.||++ .+++++++++++-.. .++.|+|+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Di--n~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~~---~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDI--NPDAVELIKKNLELNGLE--NEKVFNKDANALLHE---ERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHhh---cCCCCEEE
Confidence 4579999999 999999987645889999999 888889999999999995 577888877654211 35699999
Q ss_pred cccc
Q 044245 485 GEPY 488 (694)
Q Consensus 485 sE~~ 488 (694)
..||
T Consensus 131 lDP~ 134 (382)
T PRK04338 131 IDPF 134 (382)
T ss_pred ECCC
Confidence 9996
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00042 Score=72.93 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=63.6
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..|||||+| |.|+...++. +.+|+++|- ++.+.+.+++.+..+++. +++++++++..++..
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEi--D~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEI--DPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEF-- 99 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEEC--CHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhcc--
Confidence 34444444567899999999 9888888886 468999999 666667777777777765 789999997765432
Q ss_pred cCCccccEEEcc-cccc
Q 044245 475 TQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 475 l~~~~vDvivsE-~~~~ 490 (694)
.+.|+||+- ||+-
T Consensus 100 ---~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 ---PYFDVCVANVPYQI 113 (294)
T ss_pred ---cccCEEEecCCccc
Confidence 357999998 6654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00096 Score=67.02 Aligned_cols=113 Identities=10% Similarity=-0.015 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.+++.+.+.....++++|||+||| |.++..+++.++. .+++++|. ++.+...+++... .. ++++++.+...+
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~--~~~~~~~~~~~~~---~~-~~i~~~~~d~~~ 99 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDF--SSEMLEVAKKKSE---LP-LNIEFIQADAEA 99 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEEC--CHHHHHHHHHHhc---cC-CCceEEecchhc
Confidence 344455554444467899999999 8888777777532 48999999 6655445544433 33 678888887665
Q ss_pred ccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.. +.+++|+|++--.+. .+ + +.. ..-..+.++|+|||.++
T Consensus 100 ~~~---~~~~~D~i~~~~~~~---~~-~-~~~---~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 100 LPF---EDNSFDAVTIAFGLR---NV-T-DIQ---KALREMYRVLKPGGRLV 140 (223)
T ss_pred CCC---CCCcEEEEEEeeeeC---Cc-c-cHH---HHHHHHHHHcCCCcEEE
Confidence 542 246799998742111 11 1 111 11122234799999765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00051 Score=71.90 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=58.6
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.|+|+|+| |.+++.+|+.+....|+|++- ++.|.++|+++++.||+ +++.++++. +-. .+ .+++|+|||-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Di--s~~Al~~A~~Na~~~~l--~~~~~~~~d---lf~-~~-~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDI--SPDALALARENAERNGL--VRVLVVQSD---LFE-PL-RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEEC--CHHHHHHHHHHHHHcCC--ccEEEEeee---ccc-cc-CCceeEEEeC
Confidence 69999999 999999999864459999999 88888999999999999 456666652 211 22 2489999999
Q ss_pred cccc
Q 044245 487 PYYF 490 (694)
Q Consensus 487 ~~~~ 490 (694)
|=|.
T Consensus 184 PPYi 187 (280)
T COG2890 184 PPYI 187 (280)
T ss_pred CCCC
Confidence 6333
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0006 Score=71.60 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCc-ccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCF-SIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l-~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+.||+||+| |.++..+++..++++|.+||- .+...+++++.... +++ +..+++++.++..+.... ..++.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEi--d~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEI--DERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeC--CHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcc
Confidence 35689999999 888877777644889999999 66556677766543 222 226899998876554321 24689
Q ss_pred cEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+||+..+.-. + .+ ..| .| +. ...+.|+|||+++
T Consensus 152 DvIi~D~~dp~--~-~~-~~l~t~ef-~~--~~~~~L~~gGvlv 188 (283)
T PRK00811 152 DVIIVDSTDPV--G-PA-EGLFTKEF-YE--NCKRALKEDGIFV 188 (283)
T ss_pred cEEEECCCCCC--C-ch-hhhhHHHH-HH--HHHHhcCCCcEEE
Confidence 99999743221 1 11 122 11 11 1234699999887
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00039 Score=68.76 Aligned_cols=77 Identities=10% Similarity=-0.020 Sum_probs=54.8
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
..+||||||| |.+++..|+.....+|+++|. ++.+.+.+++.++.+++. +|+++++++.++....++...+|.|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~--~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEI--HTPIVLAANNKANKLGLK--NLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEe--eHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHHhhCCCCceeEEE
Confidence 4589999999 877766666533568999999 565555666677778884 79999998876542223334688887
Q ss_pred cc
Q 044245 485 GE 486 (694)
Q Consensus 485 sE 486 (694)
.-
T Consensus 93 ~~ 94 (194)
T TIGR00091 93 LN 94 (194)
T ss_pred EE
Confidence 64
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00073 Score=69.91 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.......++..||||||| |.++...|+..+..+|+++|. ++.+.+.+++. + .+++++.++.+++.
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~--s~~~i~~a~~~-----~--~~~~~~~~d~~~~~---- 89 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDS--SPAMLAEARSR-----L--PDCQFVEADIASWQ---- 89 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHh-----C--CCCeEEECchhccC----
Confidence 3344433456799999999 888776666533579999999 66555555432 2 35777777655442
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..++|+|++-..+. .++ ... .+-.++.+.|+|||.++
T Consensus 90 ~~~~fD~v~~~~~l~----~~~-d~~---~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 90 PPQALDLIFANASLQ----WLP-DHL---ELFPRLVSLLAPGGVLA 127 (258)
T ss_pred CCCCccEEEEccChh----hCC-CHH---HHHHHHHHhcCCCcEEE
Confidence 246899999864211 122 111 11122334799999754
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=71.92 Aligned_cols=114 Identities=9% Similarity=0.011 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhc---CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhH-HHHHHHHhccCCcccccEEEee
Q 044245 391 LSMVMAMRNALQ---GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKG-AQYLRTVADPNCFSIDRVEILQ 464 (694)
Q Consensus 391 ~~y~~Ai~~~~~---~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~-~~~~~~i~~~N~l~~~~i~vi~ 464 (694)
+...+||..-+. ..++..|||+||| |.++..+|+. |...+|||||. ++.+ +.++ +.++. . .+|+.|.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~--s~r~~~dLl-~~ak~---r-~NI~~I~ 187 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEF--SHRSGRDLT-NMAKK---R-PNIVPII 187 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC--cHHHHHHHH-HHhhh---c-CCCEEEE
Confidence 345556643322 3467899999999 8777777765 33468999998 4432 2222 22221 1 3456666
Q ss_pred cccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+.-..-....+.+|+|++... .+|+.- . +... ..++|||+|.++
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva-------~pdq~~-i-l~~n-a~r~LKpGG~~v 234 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVA-------QPDQAR-I-VALN-AQYFLKNGGHFI 234 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCC-------CcchHH-H-HHHH-HHHhccCCCEEE
Confidence 554321100111357999988751 243321 1 2222 235799999654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00085 Score=69.75 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=61.9
Q ss_pred CCCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..|||+|+| |-.++.+|+ .+...+|+|+|. ++...+.+++.++.+|+. +|+++..+.+.+.. ..+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~--~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~---~~~~f 141 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEF--SKSRTKVLIANINRCGVL--NVAVTNFDGRVFGA---AVPKF 141 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhh---hccCC
Confidence 3467899999999 777766655 433458999999 666667788899999985 69999887665432 12469
Q ss_pred cEEEccccccCCcccc
Q 044245 481 DLLIGEPYYFGNDGML 496 (694)
Q Consensus 481 DvivsE~~~~~~e~~l 496 (694)
|.|+..+=+.+ .|++
T Consensus 142 D~Vl~D~Pcsg-~G~~ 156 (264)
T TIGR00446 142 DAILLDAPCSG-EGVI 156 (264)
T ss_pred CEEEEcCCCCC-Cccc
Confidence 99999854443 3544
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=71.47 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..++||.|||-|..+.-+...-. .+|-.+|.++..++.|++.+... .....++++.-.+++... +
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f-----------~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~---~ 120 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF-----------DEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE---E 120 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC------------SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-------T
T ss_pred cceEEecccccchhHHHHHHHhc-----------CEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC---C
Confidence 47899999999999875433322 59999999999999999766542 223466777777777532 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+||+|.+.|.-.+|-.++.+..+... +..|+|+|.|+
T Consensus 121 ~~YDlIW~QW~lghLTD~dlv~fL~RC-k~~L~~~G~Iv 158 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHLTDEDLVAFLKRC-KQALKPNGVIV 158 (218)
T ss_dssp T-EEEEEEES-GGGS-HHHHHHHHHHH-HHHEEEEEEEE
T ss_pred CcEeEEEehHhhccCCHHHHHHHHHHH-HHhCcCCcEEE
Confidence 689999999876666555555555554 45889999876
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00099 Score=72.96 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
+.....++..||||||| |.++..+|+..| .+|++++. ++.+.+.+++.++ ++ .+++......++ .
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDl--S~~~l~~A~~~~~--~l---~v~~~~~D~~~l------~ 226 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTI--SAEQQKLAQERCA--GL---PVEIRLQDYRDL------N 226 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeC--CHHHHHHHHHHhc--cC---eEEEEECchhhc------C
Confidence 33334567899999999 988888887643 48999999 6666666666553 33 366665544332 2
Q ss_pred ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 478 KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.|.|+|-.++.. +-. .++.- +. ....+.|||||.++
T Consensus 227 ~~fD~Ivs~~~~eh---vg~-~~~~~-~l-~~i~r~LkpGG~lv 264 (383)
T PRK11705 227 GQFDRIVSVGMFEH---VGP-KNYRT-YF-EVVRRCLKPDGLFL 264 (383)
T ss_pred CCCCEEEEeCchhh---CCh-HHHHH-HH-HHHHHHcCCCcEEE
Confidence 57999998653321 111 11110 11 22345799999765
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00073 Score=70.02 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|.+.....++..|||||+| |.|+...++.+ .+|+++|. ++.+.+.+++.++. . ++|+++.++..++..
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEi--d~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA--KKVYAIEL--DPRLAEFLRDDEIA--A--GNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEEC--CHHHHHHHHHHhcc--C--CCEEEEEeccccCCc
Confidence 3344444444567899999999 99999999984 58999999 55555566655543 2 589999998766543
Q ss_pred cccCCccccEEEcc-cccc
Q 044245 473 DDTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~~ 490 (694)
...|.|||. ||+-
T Consensus 90 -----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 -----PEFNKVVSNLPYQI 103 (258)
T ss_pred -----hhceEEEEcCCccc
Confidence 346999999 5654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00085 Score=67.21 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=49.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-----cccC
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-----DDTQ 476 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-----~~l~ 476 (694)
.++..|||+||| |.++..+++..+ ..+|+++|. +++ +++. .|++++++.++.+. ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi--~~~-----------~~~~--~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDI--LPM-----------DPIV--GVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEec--ccc-----------cCCC--CcEEEecCCCChHHHHHHHHHhC
Confidence 467789999999 888877766532 369999999 552 2343 48899998776531 1234
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
.+++|+|+|.+
T Consensus 115 ~~~~D~V~S~~ 125 (209)
T PRK11188 115 DSKVQVVMSDM 125 (209)
T ss_pred CCCCCEEecCC
Confidence 57899999974
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=66.30 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...|++.+.+.....++..|||+||| |.++...|+. |...+|++++. ++.....+++... ... .+++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~--~~~~~~~a~~~~~--~~~-~~~~~~~~d~ 78 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDR--SEAMLALAKERAA--GLG-PNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeC--CHHHHHHHHHHhh--CCC-CceEEEeccc
Confidence 34567667676666677899999999 8777666664 22468999999 5554445554311 222 5788888765
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++. +...++|+|++-..+. .+-.+..+ + ..+.+.|+|||.++
T Consensus 79 ~~~~---~~~~~~D~v~~~~~~~---~~~~~~~~---l--~~~~~~L~~gG~l~ 121 (241)
T PRK08317 79 DGLP---FPDGSFDAVRSDRVLQ---HLEDPARA---L--AEIARVLRPGGRVV 121 (241)
T ss_pred ccCC---CCCCCceEEEEechhh---ccCCHHHH---H--HHHHHHhcCCcEEE
Confidence 5443 2346899999864222 12222211 1 12234799999765
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00086 Score=68.60 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=66.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcC--CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLS--KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g--~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
++..|||+||| |.++..+++.. ...+|+++|. ++.+.+.|++.++..+.. .+++++.+..+++.. .+.|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~--s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-----~~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDN--SQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEI-----KNAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeC--CHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCC-----CCCC
Confidence 56789999999 88877777641 1368999999 666666777777766665 689999987665542 3578
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+|++-.. + ..++.+... -.-..+.+.|+|||.++=.
T Consensus 125 ~v~~~~~-l---~~~~~~~~~--~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 125 MVILNFT-L---QFLPPEDRI--ALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EEeeecc-h---hhCCHHHHH--HHHHHHHHhcCCCeEEEEe
Confidence 8876421 1 122211110 1112223469999977644
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=66.00 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 56 YRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 56 y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
...|++.. ..++.+|||||+-||.++..+.+.|| .+|||+|..-..+..- .+ + ..||.+++
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-----------k~VyavDVG~~Ql~~k---LR-~--d~rV~~~E 129 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-----------KHVYAVDVGYGQLHWK---LR-N--DPRVIVLE 129 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-----------cEEEEEEccCCccCHh---Hh-c--CCcEEEEe
Confidence 34555542 34689999999999999999999998 7999999865443321 11 1 23676665
Q ss_pred cc-ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KR-SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~-~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.. .+.+.. .++.++.|+++++.-. . .+..++.++..+++|++.++
T Consensus 130 ~tN~r~l~~-~~~~~~~d~~v~DvSF--I----SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 130 RTNVRYLTP-EDFTEKPDLIVIDVSF--I----SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred cCChhhCCH-HHcccCCCeEEEEeeh--h----hHHHHHHHHHHhcCCCceEE
Confidence 54 555543 3455689999997522 1 24556667777888988765
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=66.92 Aligned_cols=73 Identities=18% Similarity=0.076 Sum_probs=56.6
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++++.|||+||| |.++..+++.+ .+|+++|. ++.+...+++.+..++.. ++++++.+..+++. ++.|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~--s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~------~~fD 121 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDI--SEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC------GEFD 121 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEECChhhCC------CCcC
Confidence 4567899999999 98888888874 48999999 676667777777777776 68999887655432 6789
Q ss_pred EEEcc
Q 044245 482 LLIGE 486 (694)
Q Consensus 482 vivsE 486 (694)
+|++-
T Consensus 122 ~ii~~ 126 (219)
T TIGR02021 122 IVVCM 126 (219)
T ss_pred EEEEh
Confidence 99874
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=68.61 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.+...++..||||||| |.++...++...-.+|+++|. ++.+.+.++ .+ .++++.++.+++.
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~--s~~~~~~a~----~~-----~~~~~~~d~~~~~---- 85 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDS--SPEMVAAAR----ER-----GVDARTGDVRDWK---- 85 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHH----hc-----CCcEEEcChhhCC----
Confidence 3344444467899999999 888777766521258999999 665544443 22 3567777666542
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..+.|+|++-..+. .++ +.-. ..+ ++.+.|||||.++
T Consensus 86 ~~~~fD~v~~~~~l~----~~~-d~~~--~l~-~~~~~LkpgG~l~ 123 (255)
T PRK14103 86 PKPDTDVVVSNAALQ----WVP-EHAD--LLV-RWVDELAPGSWIA 123 (255)
T ss_pred CCCCceEEEEehhhh----hCC-CHHH--HHH-HHHHhCCCCcEEE
Confidence 236799999964221 122 1111 111 1234699999653
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00026 Score=68.10 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
|..+...-.||.|||+|+| |+-+..||++| |+.|++.+- .+...+.++-++++||.+ |.+++.+.- -
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~--~P~~~~ai~lNa~angv~---i~~~~~d~~---g--- 138 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADI--DPWLEQAIRLNAAANGVS---ILFTHADLI---G--- 138 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCC--ChHHHHHhhcchhhccce---eEEeecccc---C---
Confidence 4445555578999999999 99999999997 999999877 455555678889999975 777765321 1
Q ss_pred CCccccEEEc-ccccc
Q 044245 476 QQKKVDLLIG-EPYYF 490 (694)
Q Consensus 476 ~~~~vDvivs-E~~~~ 490 (694)
++.++|+|+. ..||.
T Consensus 139 ~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 139 SPPAFDLLLAGDLFYN 154 (218)
T ss_pred CCcceeEEEeeceecC
Confidence 3578997765 56665
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0015 Score=66.02 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEee
Q 044245 386 DGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQ 464 (694)
Q Consensus 386 D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~ 464 (694)
|..|.+..++.+..+....++..|||+|+| |.++..+++.| + +|+++|. ++.+...+++.+..++. .+++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~-~v~~iD~--s~~~~~~a~~~~~~~~~--~~~~~~~ 99 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-A-NVTGIDA--SEENIEVAKLHAKKDPL--LKIEYRC 99 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-C-eEEEEeC--CHHHHHHHHHHHHHcCC--CceEEEe
Confidence 566777777777765323457789999999 88888888875 4 5999999 66555566666666665 2577777
Q ss_pred cccccccccccCCccccEEEcc
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE 486 (694)
+..+++.... +.+.|+|++-
T Consensus 100 ~d~~~~~~~~--~~~~D~i~~~ 119 (224)
T TIGR01983 100 TSVEDLAEKG--AKSFDVVTCM 119 (224)
T ss_pred CCHHHhhcCC--CCCccEEEeh
Confidence 7655543221 3689999885
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=74.03 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc-cCCcc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD-TQQKK 479 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~-l~~~~ 479 (694)
..+|..|||+|+| |..++..|+. ++..+|+|+|. ++...+.+++.++.+|+. +|+++.++.+++.... ...++
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~--~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDR--SASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcC--CHHHHHHHHHHHHHcCCC--eEEEEeCChhhccccccccccc
Confidence 3467899999999 7777766664 43569999999 555556778889999995 5999988776553110 11357
Q ss_pred ccEEEccccccCCcccc
Q 044245 480 VDLLIGEPYYFGNDGML 496 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l 496 (694)
+|.|+..+-+.+ .|++
T Consensus 326 fD~Vl~DaPCSg-~G~~ 341 (434)
T PRK14901 326 FDRILLDAPCSG-LGTL 341 (434)
T ss_pred CCEEEEeCCCCc-cccc
Confidence 999999865554 3554
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=72.65 Aligned_cols=81 Identities=10% Similarity=-0.039 Sum_probs=59.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+|+| |.+++.+++.++..+|+++|. ++.+.+.+++.++.+|+. ++++.++..++.. .+..++.|.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~--s~~~l~~~~~n~~~~g~~---~~~~~~D~~~~~~-~~~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDI--DAQRLERVRENLQRLGLK---ATVIVGDARDPAQ-WWDGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeC--CHHHHHHHHHHHHHcCCC---eEEEEcCcccchh-hcccCCCCE
Confidence 467889999999 888888887643369999999 666666788889999984 6788877654421 112357999
Q ss_pred EEcccccc
Q 044245 483 LIGEPYYF 490 (694)
Q Consensus 483 ivsE~~~~ 490 (694)
|++.+=|.
T Consensus 317 Vl~D~Pcs 324 (427)
T PRK10901 317 ILLDAPCS 324 (427)
T ss_pred EEECCCCC
Confidence 99985333
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=73.12 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=75.8
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..+|..|||+|+| |..++.+|+..+..+|+|+|. ++...+.+++.++.+|+. .+++++.+...+.... ...+++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~--~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~-~~~~~fD 311 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDI--HEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQW-AENEQFD 311 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHHHHHcCCC-eEEEEecccccccccc-ccccccC
Confidence 3467899999999 878777777533579999999 665556778889999986 5666677654332210 1246799
Q ss_pred EEEccccccCCccccC------cc----hh------hHHHHHhhcccccCCCceEEcceEEE
Q 044245 482 LLIGEPYYFGNDGMLP------WQ----NL------RFWKERSKLDPVLSKEVIIMPFKGIL 527 (694)
Q Consensus 482 vivsE~~~~~~e~~l~------w~----~l------~f~~~r~~~~~~L~p~g~i~P~~a~l 527 (694)
.|+..+-|.+ +|++. |. .+ ..-..+++ .++|||||.++=+.|++
T Consensus 312 ~VllDaPcSg-~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a-~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 312 RILLDAPCSA-TGVIRRHPDIKWLRKPRDIAELAELQSEILDAI-WPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEEcCCCCC-CcccccCcchhhcCCHHHHHHHHHHHHHHHHHH-HHhcCCCcEEEEEeCCC
Confidence 9999965554 35542 10 00 01122222 24799999887444443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0016 Score=68.67 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+||||||++|.++..+.+.|+ +|+|||.. .|... +.. ..+|+.+.++.......
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~------------~V~AVD~g-~l~~~----L~~---~~~V~h~~~d~fr~~p~- 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM------------FVTAVDNG-PMAQS----LMD---TGQVEHLRADGFKFRPP- 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC------------EEEEEech-hcCHh----hhC---CCCEEEEeccCcccCCC-
Confidence 35689999999999999999999985 99999964 34322 222 24788888887665421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~ 181 (694)
.+++|++||++... ...+.+...++|..|
T Consensus 268 --~~~vDwvVcDmve~-------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 268 --RKNVDWLVCDMVEK-------PARVAELMAQWLVNG 296 (357)
T ss_pred --CCCCCEEEEecccC-------HHHHHHHHHHHHhcC
Confidence 46899999986542 445556666677665
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00077 Score=63.98 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=73.0
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.|||+||| |.|=.-.|+-|=..+.+.++= ++.|.++|+.++++++++ |.|++-+. +|+.++.-..+.|+|+--
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDY--s~~AV~LA~niAe~~~~~-n~I~f~q~---DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDY--SEKAVELAQNIAERDGFS-NEIRFQQL---DITDPDFLSGQFDLVLDK 143 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCcccccc--CHHHHHHHHHHHHhcCCC-cceeEEEe---eccCCcccccceeEEeec
Confidence 79999999 888777778753455777877 788888999999999998 88998776 455544446789999876
Q ss_pred c-ccc-CCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 487 P-YYF-GNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 487 ~-~~~-~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+ |.. ++.++.+-.-+. ..-+..+++|+|||+.+=.
T Consensus 144 GT~DAisLs~d~~~~r~~--~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLV--VYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred CceeeeecCCCCccccee--eehhhHhhccCCCcEEEEE
Confidence 4 221 112333311110 1113345689999976533
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=69.28 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=73.1
Q ss_pred CEEEEEcCCCC----HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH------------------H---
Q 044245 68 CHVLDIGAGTG----LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH------------------V--- 122 (694)
Q Consensus 68 ~~VLDiG~GtG----~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~------------------~--- 122 (694)
-+|+..||+|| .++|.+...++.. ....+|+|.|+|+.+++.|++-+- .
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~------~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~ 190 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTA------PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTG 190 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhccc------CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccC
Confidence 68999999999 7788877764310 013689999999999999987520 0
Q ss_pred --cC-------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 123 --NG-------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 123 --ng-------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.| +...|++...+..+.+.+ ..++||+|+|.-+-.+ +.+.....+...+.+.|+|||.++-..
T Consensus 191 ~~~~~~~v~~~lr~~V~F~~~NL~~~~~~--~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 191 PHEGLVRVRQELANYVDFQQLNLLAKQWA--VPGPFDAIFCRNVMIY-FDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCCceEEEChHHHccCEEEcccCCCCCCc--cCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01 224566666665542211 1368999999422111 123345567777788999999987554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=67.73 Aligned_cols=83 Identities=6% Similarity=-0.084 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
...+.+.....++..|||||+| |.++..+++....-+|+.++. .++ .+.+++.++..|++ ++|+++.++..+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~--~~~-~~~a~~~~~~~gl~-~rv~~~~~d~~~~-- 211 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL--PGA-IDLVNENAAEKGVA-DRMRGIAVDIYKE-- 211 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec--HHH-HHHHHHHHHhCCcc-ceEEEEecCccCC--
Confidence 3445555544456799999999 988888887742357888876 343 45678888888998 8999999865432
Q ss_pred cccCCccccEEEc
Q 044245 473 DDTQQKKVDLLIG 485 (694)
Q Consensus 473 ~~l~~~~vDvivs 485 (694)
.++ ..|+++.
T Consensus 212 -~~~--~~D~v~~ 221 (306)
T TIGR02716 212 -SYP--EADAVLF 221 (306)
T ss_pred -CCC--CCCEEEe
Confidence 232 3587654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00042 Score=70.64 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=85.5
Q ss_pred cccCCCCCccceeEeccCCCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHH-HHHHH
Q 044245 9 LKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSM-MAARA 87 (694)
Q Consensus 9 ~~~~~~~g~~~w~~~~~~~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl-~aa~~ 87 (694)
..+.|..|+..|....++ .. .+ .+ ..-..|.....-.+ ..-+......+..|.|+-+|-|.+++ .+.++
T Consensus 147 ~~v~~L~Gd~gWV~~v~N-GI-----~~-~~-d~t~~MFS~GN~~E--K~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a 216 (351)
T KOG1227|consen 147 PNVQPLYGDLGWVKHVQN-GI-----TQ-IW-DPTKTMFSRGNIKE--KKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA 216 (351)
T ss_pred Cccccccccccceeehhc-Ce-----EE-Ee-chhhhhhhcCcHHH--HHHhhhcccccchhhhhhcccceEEeehhhcc
Confidence 356788899999987765 10 00 00 11223443332112 12233333456899999999999999 88899
Q ss_pred cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE
Q 044245 88 MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS 154 (694)
Q Consensus 88 g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs 154 (694)
|| ..|+|+|.||..++..+++++.|+..++..+++++.+...+ ...+|-|..
T Consensus 217 gA-----------k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~----~~~AdrVnL 268 (351)
T KOG1227|consen 217 GA-----------KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP----RLRADRVNL 268 (351)
T ss_pred Cc-----------cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc----cccchheee
Confidence 87 78999999999999999999999999999999999877543 246777664
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.002 Score=68.97 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=71.5
Q ss_pred HHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHH---h--ccCCcccccEEEee
Q 044245 393 MVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTV---A--DPNCFSIDRVEILQ 464 (694)
Q Consensus 393 y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i---~--~~N~l~~~~i~vi~ 464 (694)
|+.+|.... .....+.||+||+| |.....+.+..+..+|++||- .+...++|++. . ....+...|++++.
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEI--DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDL--DGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 555555432 11234689999999 877777888755789999999 56555666641 1 12234337999988
Q ss_pred cccccccccccCCccccEEEccccccCCccccCcchhh---HHHHHhhcccccCCCceEE
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLR---FWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~---f~~~r~~~~~~L~p~g~i~ 521 (694)
++..+.-. . ..++.|+||.....-. +-.. ..|+ |+- ...+.|+|||+++
T Consensus 214 ~Da~~fL~-~-~~~~YDVIIvDl~DP~--~~~~-~~LyT~EFy~---~~~~~LkPgGV~V 265 (374)
T PRK01581 214 CDAKEFLS-S-PSSLYDVIIIDFPDPA--TELL-STLYTSELFA---RIATFLTEDGAFV 265 (374)
T ss_pred CcHHHHHH-h-cCCCccEEEEcCCCcc--ccch-hhhhHHHHHH---HHHHhcCCCcEEE
Confidence 76654321 1 2467999999853321 1111 2231 211 1234699999863
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00057 Score=68.05 Aligned_cols=90 Identities=8% Similarity=0.102 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...+-+.+.+.. +.+.||+||++ |.-++..|++ +.-.+|+++|. .+...++|++.++..|++ ++|+++.+..
T Consensus 33 ~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~--~~~~~~~A~~~~~~ag~~-~~I~~~~gda 106 (205)
T PF01596_consen 33 TGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEI--DPERAEIARENFRKAGLD-DRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEES--SHHHHHHHHHHHHHTTGG-GGEEEEES-H
T ss_pred HHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecC--cHHHHHHHHHHHHhcCCC-CcEEEEEecc
Confidence 334444555444 45689999999 8888888875 11258999999 676667899999999998 9999999977
Q ss_pred cccccccc----CCccccEEEcc
Q 044245 468 KCLTMDDT----QQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l----~~~~vDvivsE 486 (694)
.++-. .| +..+.|.|.-.
T Consensus 107 ~~~l~-~l~~~~~~~~fD~VFiD 128 (205)
T PF01596_consen 107 LEVLP-ELANDGEEGQFDFVFID 128 (205)
T ss_dssp HHHHH-HHHHTTTTTSEEEEEEE
T ss_pred HhhHH-HHHhccCCCceeEEEEc
Confidence 54321 11 12468988775
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=80.29 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc--------------cccEEEeecccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS--------------IDRVEILQKGKK 468 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~--------------~~~i~vi~~~~~ 468 (694)
++++.|||+||| |.+++.+|+.....+|+++|- ++.|.++|+++++.|+++ .++|++++++..
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDi--s~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDI--NPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 346789999999 999999888754579999999 888889999999988652 158999998653
Q ss_pred cccccccCCccccEEEccc
Q 044245 469 CLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~ 487 (694)
+.-. .. ..++|+|||-|
T Consensus 195 ~~~~-~~-~~~fDlIVSNP 211 (1082)
T PLN02672 195 GYCR-DN-NIELDRIVGCI 211 (1082)
T ss_pred hhcc-cc-CCceEEEEECC
Confidence 2211 11 13699999974
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=56.19 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=64.5
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.++|+|+| |.++..+++.+ ..+++++|. ++.+...+++..+.++. .+++++.+...+... ....++|+|++-
T Consensus 1 ~ildig~G~G~~~~~~~~~~-~~~~~~~d~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGP-GARVTGVDI--SPVALELARKAAAALLA--DNVEVLKGDAEELPP--EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC-CCEEEEEeC--CHHHHHHHHHHHhcccc--cceEEEEcChhhhcc--ccCCceEEEEEc
Confidence 37999999 87777777754 789999999 66655555544444443 579999887665543 124689999998
Q ss_pred ccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 487 PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 487 ~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
..+... + +...- +.+. +.+.|+|+|.++-.
T Consensus 74 ~~~~~~----~-~~~~~-~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHL----V-EDLAR-FLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred cceeeh----h-hHHHH-HHHH-HHHHcCCCCEEEEE
Confidence 643310 1 11100 1111 12358999988754
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=65.12 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=66.9
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.......+++.|||||+| |.++...++.| .+|+++|. ++.+.+.+++.+..+++ .++++....+++...
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~--s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~- 110 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLG--ADVTGIDA--SEENIEVARLHALESGL---KIDYRQTTAEELAAE- 110 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcC--CHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhh-
Confidence 34444445567899999999 88888888875 46999999 55555566665555555 367776655544321
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..++.|+|++-..+. .+-. .-. . -....++|+|||.++
T Consensus 111 -~~~~fD~Ii~~~~l~---~~~~--~~~--~-l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 111 -HPGQFDVVTCMEMLE---HVPD--PAS--F-VRACAKLVKPGGLVF 148 (233)
T ss_pred -cCCCccEEEEhhHhh---ccCC--HHH--H-HHHHHHHcCCCcEEE
Confidence 246899998853111 1111 111 1 112234699999776
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=69.82 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=61.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.+++..++.-+..+|+++|. ++.+.+.+++... . .+++++.+..+++.. +.+..|+|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~--S~~mL~~A~~k~~---~--~~i~~i~gD~e~lp~---~~~sFDvV 182 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQ--SPHQLAKAKQKEP---L--KECKIIEGDAEDLPF---PTDYADRY 182 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHhhh---c--cCCeEEeccHHhCCC---CCCceeEE
Confidence 45689999999 888777666422578999999 5554445544332 1 467888887765543 34679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+-.... .++ +.-. .. ....+.|+|||.++
T Consensus 183 Is~~~L~----~~~-d~~~--~L-~e~~rvLkPGG~Lv 212 (340)
T PLN02490 183 VSAGSIE----YWP-DPQR--GI-KEAYRVLKIGGKAC 212 (340)
T ss_pred EEcChhh----hCC-CHHH--HH-HHHHHhcCCCcEEE
Confidence 9853111 111 1111 11 12234799999863
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0026 Score=66.42 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCCcEEEecCC-c-hHHHHHH-HcCCCceEEEcCCCcChhHHHHHHHHhcc-CCcccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-V-FLTICVA-RLSKTAHVLSLLPGLGDKGAQYLRTVADP-NCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-g-iLsl~aA-~~g~a~~V~ave~~~~~~~~~~~~~i~~~-N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
+.+.|++||+| | +-+++.+ ++....+|+.+|. ++.+.+.|++.+++ .|+. ++|++..++..++.. . .++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~--d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~-~--l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDI--DPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTE-S--LKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHHhhhccCcc-CCcEEEECchhhccc-c--cCCc
Confidence 56889999999 4 5555444 4544568999999 77777888998854 8897 899999987655421 1 2679
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|+|.+-- +. .|-...-- -.-+.+.+.|+|||.++=
T Consensus 197 DlVF~~A--Li--~~dk~~k~---~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 197 DVVFLAA--LV--GMDKEEKV---KVIEHLGKHMAPGALLML 231 (296)
T ss_pred CEEEEec--cc--ccccccHH---HHHHHHHHhcCCCcEEEE
Confidence 9998762 11 12110111 111122346999997763
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=71.68 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=60.3
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..|||+|+| |-.++.+|+. ++..+|+|+|. ++...+.+++.++.+|+. +|+++.++..++. +.+.+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~--s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~----~~~~f 319 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDR--YPQKLEKIRSHASALGIT--IIETIEGDARSFS----PEEQP 319 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHHHHHHHhCCC--eEEEEeCcccccc----cCCCC
Confidence 3467899999999 8777666653 33469999999 666666788889999984 6999988766542 23579
Q ss_pred cEEEccccccC
Q 044245 481 DLLIGEPYYFG 491 (694)
Q Consensus 481 DvivsE~~~~~ 491 (694)
|.|+..+-+.+
T Consensus 320 D~Vl~D~Pcsg 330 (445)
T PRK14904 320 DAILLDAPCTG 330 (445)
T ss_pred CEEEEcCCCCC
Confidence 99998754444
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=68.53 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=57.3
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ 476 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~ 476 (694)
.+.....++..|||+|+| |.++..+++.+ + +|+++|. ++.+.+.+++... . +++++++++..++..+++
T Consensus 35 ~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~-~v~avE~--d~~~~~~~~~~~~----~-~~v~~i~~D~~~~~~~~~- 104 (272)
T PRK00274 35 VDAAGPQPGDNVLEIGPGLGALTEPLLERA-A-KVTAVEI--DRDLAPILAETFA----E-DNLTIIEGDALKVDLSEL- 104 (272)
T ss_pred HHhcCCCCcCeEEEeCCCccHHHHHHHHhC-C-cEEEEEC--CHHHHHHHHHhhc----c-CceEEEEChhhcCCHHHc-
Confidence 333344467789999999 99999999985 4 9999999 5555555544332 2 579999998877654322
Q ss_pred CccccEEEcc-cccc
Q 044245 477 QKKVDLLIGE-PYYF 490 (694)
Q Consensus 477 ~~~vDvivsE-~~~~ 490 (694)
..|.||+. ||+.
T Consensus 105 --~~~~vv~NlPY~i 117 (272)
T PRK00274 105 --QPLKVVANLPYNI 117 (272)
T ss_pred --CcceEEEeCCccc
Confidence 15899998 5655
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.16 E-value=8.6e-05 Score=65.71 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=40.0
Q ss_pred EEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC-CCc
Q 044245 71 LDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID-SRA 149 (694)
Q Consensus 71 LDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~-~~~ 149 (694)
||||+..|..++.++++.... ...+++++|..+. .+.+++.++..++.++++++++++.+.-. .++ +++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~--~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-------GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP--SLPDGPI 70 (106)
T ss_dssp ---------------------------------EEEESS-------------GGG-BTEEEEES-THHHHH--HHHH--E
T ss_pred Ccccccccccccccccccccc-------ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH--HcCCCCE
Confidence 689999998888877765411 0137999999885 44555666667888899999999977531 222 689
Q ss_pred cEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 150 DILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 150 DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
|+++.+. ...++.....+.. ....|+|||+++-+
T Consensus 71 dli~iDg---~H~~~~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 71 DLIFIDG---DHSYEAVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEEES------HHHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EEEEECC---CCCHHHHHHHHHH-HHHHcCCCeEEEEe
Confidence 9998652 1112223334443 34578999988754
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00098 Score=72.54 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=69.7
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~ 459 (694)
.-..|-...-.-|..+... ... .+..|||++|| |.+|+.+|+. +++|+++|. ++.+.+.++++++.||+ ++
T Consensus 184 F~Q~N~~~~e~l~~~v~~~-~~~-~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~--~~~ai~~a~~N~~~~~~--~~ 255 (362)
T PRK05031 184 FTQPNAAVNEKMLEWALDA-TKG-SKGDLLELYCGNGNFTLALARN--FRRVLATEI--SKPSVAAAQYNIAANGI--DN 255 (362)
T ss_pred eeccCHHHHHHHHHHHHHH-hhc-CCCeEEEEeccccHHHHHHHhh--CCEEEEEEC--CHHHHHHHHHHHHHhCC--Cc
Confidence 3344444444444444433 222 12469999999 9999988875 689999999 77777889999999999 47
Q ss_pred EEEeecccccccccccC--------------CccccEEEcccccc
Q 044245 460 VEILQKGKKCLTMDDTQ--------------QKKVDLLIGEPYYF 490 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~--------------~~~vDvivsE~~~~ 490 (694)
++++.+++++.-. .+. ..+.|+||-.|=+.
T Consensus 256 v~~~~~d~~~~l~-~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 256 VQIIRMSAEEFTQ-AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred EEEEECCHHHHHH-HHhhcccccccccccccCCCCCEEEECCCCC
Confidence 9999998876421 110 12579999996334
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=67.66 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH--H---HcCCC-CcEEEEecccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL--H---VNGMG-RNIKVINKRSDEL 139 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~--~---~ngl~-~~I~vi~~~~~~l 139 (694)
.-.+||-+|.|-|+-...+.|.-. ..+|+-+|.+|.|++.++++. + ++.++ .|++++..|..++
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~----------~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w 358 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQ----------VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW 358 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCC----------cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH
Confidence 347899999999998888877631 369999999999999999443 2 23333 4899999997665
Q ss_pred ccccCCCCCccEEEEcccccccc--CCChHHHHHHHHHhccCCCCeEEcCceEEEEEEe
Q 044245 140 EVGVDIDSRADILVSEILDSELL--GEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLV 196 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~--~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~v 196 (694)
-.. -.++||.+|-++.+..-. +.-.-..+-...++.|+++|+++-+.+..|-.|-
T Consensus 359 lr~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 359 LRT--AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred HHh--hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 421 225899999887653221 1112223445567789999999999988886653
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0002 Score=69.97 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc----c
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV----G 142 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~----~ 142 (694)
+.+|||+||++|.++..+.+.+. +..+|+|+|..+. ... ..+..+.+|..+... .
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~---------~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGG---------PAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTT---------TEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGG
T ss_pred ccEEEEcCCcccceeeeeeeccc---------ccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhh
Confidence 48999999999999999999872 1379999999754 122 256666666544321 0
Q ss_pred cCC---CCCccEEEEcc
Q 044245 143 VDI---DSRADILVSEI 156 (694)
Q Consensus 143 ~~l---~~~~DlIvse~ 156 (694)
..+ .+++|+|+|+.
T Consensus 83 ~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDM 99 (181)
T ss_dssp GSHGTTTCSESEEEE--
T ss_pred hhccccccCcceecccc
Confidence 111 25899999986
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=64.43 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~~ 470 (694)
++..|||+||| |-=+++.|+.| -+|+|+|. ++.|.+ +..++|+++ ..+|+++.++..++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~--s~~Ai~---~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVEL--SELAVE---QFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC--CeEEEEcc--CHHHHH---HHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 45689999999 98888888886 57999999 776543 334456553 14678887766655
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
....+ .++|.|+-...+. .++ ...+--|. ..+.++|+|||.
T Consensus 110 ~~~~~--~~fd~v~D~~~~~----~l~-~~~R~~~~-~~l~~lL~pgG~ 150 (218)
T PRK13255 110 TAADL--ADVDAVYDRAALI----ALP-EEMRERYV-QQLAALLPAGCR 150 (218)
T ss_pred CcccC--CCeeEEEehHhHh----hCC-HHHHHHHH-HHHHHHcCCCCe
Confidence 43222 3678887765433 344 33321122 123457999985
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0024 Score=73.03 Aligned_cols=76 Identities=7% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++..|||+||| |.++...|+ .. -.+|+++|. ++.+.+.+++....++ .++.++.++..++.. .++++.+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDI--S~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~-~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDI--SENVIDTLKKKKQNEG---RSWNVIKGDAINLSS-SFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEEC--CHHHHHHHHHHhhhcC---CCeEEEEcchHhCcc-ccCCCCEEE
Confidence 56799999999 876655444 43 479999999 6655556655544444 357888886655421 134578999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++-+
T Consensus 491 VVsn~ 495 (677)
T PRK06922 491 IVYSS 495 (677)
T ss_pred EEEch
Confidence 99753
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=64.30 Aligned_cols=69 Identities=7% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-----cccC
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-----DDTQ 476 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-----~~l~ 476 (694)
.++..|||+|+| |.++.++++. ++..+|+++|. +++. ++ ..++++.+..++... ..++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDi--s~~~-----------~~--~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDL--QPMK-----------PI--ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEec--cccc-----------cC--CCceEEEeeCCChhHHHHHHHHhC
Confidence 467899999999 7777666554 33568999999 5532 12 346777665544221 0123
Q ss_pred CccccEEEccc
Q 044245 477 QKKVDLLIGEP 487 (694)
Q Consensus 477 ~~~vDvivsE~ 487 (694)
.+++|+|++.+
T Consensus 96 ~~~~D~V~~~~ 106 (188)
T TIGR00438 96 DDKVDVVMSDA 106 (188)
T ss_pred CCCccEEEcCC
Confidence 56799999973
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0031 Score=56.33 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=58.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
-++++|+|||++.|.-++.++-+|| .+|+++|.++.+.+..+++++.|.+-|+..-.. ++..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA-----------K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-eW~~------ 88 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA-----------SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-EWNG------ 88 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc-----------cEEEEeccCHHHHHHHHHHhhhheeeeceeecc-cccc------
Confidence 3589999999999999999999998 799999999999999999999987765544322 3322
Q ss_pred CCCCccEEEEc
Q 044245 145 IDSRADILVSE 155 (694)
Q Consensus 145 l~~~~DlIvse 155 (694)
.-+.||+.+.+
T Consensus 89 ~Y~~~Di~~iD 99 (156)
T PHA01634 89 EYEDVDIFVMD 99 (156)
T ss_pred cCCCcceEEEE
Confidence 22679988754
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=69.12 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=53.0
Q ss_pred CcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEeecccc-ccccc-ccCCcccc
Q 044245 407 PLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQKGKK-CLTMD-DTQQKKVD 481 (694)
Q Consensus 407 ~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~~~~~-~~~~~-~l~~~~vD 481 (694)
..+||||+| +|-+|++++.=| =+++|.|- .+.+.+.|+++++.| +|+ ++|+|++.... .|-.. ..+.++.|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~-W~fvaTdI--D~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYG-WSFVATDI--DPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES---HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhcC-CeEEEecC--CHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceee
Confidence 468999999 699999999632 68889988 777888999999999 998 99999876433 22111 11347899
Q ss_pred EEEcc-ccccCCccc
Q 044245 482 LLIGE-PYYFGNDGM 495 (694)
Q Consensus 482 vivsE-~~~~~~e~~ 495 (694)
..+|- |||.+.|-+
T Consensus 180 ftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 180 FTMCNPPFYSSQEEA 194 (299)
T ss_dssp EEEE-----SS----
T ss_pred EEecCCccccChhhh
Confidence 99998 688765433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0027 Score=72.72 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--cc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV--GV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~--~~ 143 (694)
...+|||.|||+|.+.+.+++....... ...-...++|+|+++.++..|+.++...+. ..+.+++++...... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~--~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINY--FKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCC--cccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc
Confidence 3568999999999998888876531000 000125799999999999999999877652 235566555432111 01
Q ss_pred CCCCCccEEEEcccccc
Q 044245 144 DIDSRADILVSEILDSE 160 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~ 160 (694)
+..++||+||+||....
T Consensus 108 ~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 108 SYLDLFDIVITNPPYGR 124 (524)
T ss_pred cccCcccEEEeCCCccc
Confidence 12258999999996653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=64.11 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=66.7
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++.+|+|||+-.|.++..+++..++ ..+|+|+|+.| |- .. .+|.++++|+++-+..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~---------~~~ivavDi~p-~~----------~~-~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGA---------GGKIVAVDILP-MK----------PI-PGVIFLQGDITDEDTL 100 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCC---------CCcEEEEECcc-cc----------cC-CCceEEeeeccCccHH
Confidence 3667899999999999999999998762 35699999853 21 22 2599999998764421
Q ss_pred c----CCC-CCccEEEEccccccccC---CCh-----HHHHHHHHHhccCCCCeEE
Q 044245 143 V----DID-SRADILVSEILDSELLG---EGL-----IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~----~l~-~~~DlIvse~~~~~l~~---e~~-----l~~l~~~~~~~L~p~G~ii 185 (694)
. .+. .++|+|+|++.-...-. +.. .....+....+|+|||.++
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 1 122 34799999864321100 111 1123334456899999876
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=65.05 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec-ccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK-GKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~-~~~ 468 (694)
....||+...-..+|++|||+|.. |+. -++-+.| |++|||++-+-...+-++ +|+ .||.++++ ++.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFT-d~lLq~g-Ak~VyavDVG~~Ql~~kL------R~d---~rV~~~E~tN~r 134 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFT-DVLLQRG-AKHVYAVDVGYGQLHWKL------RND---PRVIVLERTNVR 134 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHH-HHHHHcC-CcEEEEEEccCCccCHhH------hcC---CcEEEEecCChh
Confidence 456778887777889999999976 555 4555776 999999998532222221 122 57888765 344
Q ss_pred cccccccCCccccEEEccccccC
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFG 491 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~ 491 (694)
.++.+++. +++|+++++.-|-+
T Consensus 135 ~l~~~~~~-~~~d~~v~DvSFIS 156 (245)
T COG1189 135 YLTPEDFT-EKPDLIVIDVSFIS 156 (245)
T ss_pred hCCHHHcc-cCCCeEEEEeehhh
Confidence 56666664 58999999974443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0042 Score=64.29 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=62.2
Q ss_pred CEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-HcCCCCcEEEEeccccccccccCC
Q 044245 68 CHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-VNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 68 ~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+|+=||+|.= +-++.+++... +...|+++|+++.+++.+++.++ ..|++.+++++.+|..+... ++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~---------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~--dl 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG---------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY--DL 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT---------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G--G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc--cc
Confidence 59999999964 44666665432 13589999999999999999988 67888999999999877642 22
Q ss_pred CCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..||+|+.. .+.+ ...-..++..+.+.++||++++-+
T Consensus 191 -~~~DvV~lA----alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 191 -KEYDVVFLA----ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----SEEEE-----TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred -ccCCEEEEh----hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 479988752 2333 112445666666789999988755
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0086 Score=64.90 Aligned_cols=126 Identities=19% Similarity=0.159 Sum_probs=88.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
...+|.+|||+.++.|.=+..+|..... ....|+|+|.++.-++..++++++.|+. ++.+++.|...+...
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~--------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~ 223 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN--------EGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAEL 223 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC--------CCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccc
Confidence 3567899999999999888888877651 1245799999999999999999999997 588888887655321
Q ss_pred cCCCCCccEEEEccc--cccccCC--C---------------hHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 143 VDIDSRADILVSEIL--DSELLGE--G---------------LIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 143 ~~l~~~~DlIvse~~--~~~l~~e--~---------------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
....++||.|+.+.. +.+.+.. . ....++...-++|+|||.++=..|++. +-|.+
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~--~eENE 297 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT--PEENE 297 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc--hhcCH
Confidence 111136999998753 2223310 0 111355555568999999987777766 55555
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0038 Score=66.17 Aligned_cols=127 Identities=12% Similarity=-0.027 Sum_probs=76.7
Q ss_pred HHHHHHHHHhc--CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQ--GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~--~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|++.|.+..- ....+.||+||+| |.++..+++..+..+|..||- .+...+++++.... ++++..|++++.++
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEi--D~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEI--DKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEEC--CHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 46666665321 1235789999999 888878888755789999998 55444566664432 34553599999887
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcceEEEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPFKGILK 528 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~~a~l~ 528 (694)
..+.-. ..+.++.|+||+..+.-. +. + ..| .| |. ...+.|+|||+++-.....+
T Consensus 154 a~~~l~-~~~~~~yDvIi~D~~dp~--~~-~-~~L~t~ef-~~--~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 154 GVEFLK-NAPEGTYDAIIVDSSDPV--GP-A-QELFEKPF-FE--SVARALRPGGVVCTQAESMW 210 (308)
T ss_pred HHHHHh-hccCCCCCEEEEcCCCCC--Cc-h-hhhhHHHH-HH--HHHHhcCCCcEEEECcCCcc
Confidence 543321 122467999999753321 21 2 222 12 21 12346999999865444333
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0067 Score=62.57 Aligned_cols=124 Identities=17% Similarity=0.083 Sum_probs=76.9
Q ss_pred hCCHHHHHHHHHHHH---hhcc------CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHH
Q 044245 47 LNDSYRNRAYRLAID---KMVT------KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMK 117 (694)
Q Consensus 47 l~D~~r~~~y~~ai~---~~~~------~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~ 117 (694)
....+|...|...+. +... .+.+||.=|||.|.|+..+|+.|- .+.|.|.|-.|+-..+
T Consensus 28 eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~------------~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 28 EGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY------------AVQGNEFSYFMLLASN 95 (270)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc------------eEEEEEchHHHHHHHH
Confidence 345667777665544 3332 247899999999999999999985 8999999999977665
Q ss_pred HHHHHcCCC---------------------------------------CcEEEEeccccccccccCCCCCccEEEEcccc
Q 044245 118 KVLHVNGMG---------------------------------------RNIKVINKRSDELEVGVDIDSRADILVSEILD 158 (694)
Q Consensus 118 ~~~~~ngl~---------------------------------------~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~ 158 (694)
-+.....-. .++....||..++..+....+++|.|++.
T Consensus 96 fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--- 172 (270)
T PF07942_consen 96 FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--- 172 (270)
T ss_pred HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---
Confidence 544321111 12333334433333211123689999884
Q ss_pred ccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 159 SELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 159 ~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.|+..-.-+-..++.+.++|+|||.-|
T Consensus 173 FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 173 FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 333222223345566778999999655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0015 Score=64.46 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCC----HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH--------------HH-----c
Q 044245 67 SCHVLDIGAGTG----LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL--------------HV-----N 123 (694)
Q Consensus 67 ~~~VLDiG~GtG----~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~--------------~~-----n 123 (694)
.-+|+..||+|| .++|.+...+.... .-..+|+|.|+|+.+++.|++=+ +. .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~-----~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~ 106 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGAL-----GWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERD 106 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-T-----T-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccC-----CCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccC
Confidence 468999999999 67777777433110 01369999999999999998621 00 0
Q ss_pred --C------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 124 --G------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 124 --g------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
+ +.++|++...+..+.. ...++||+|+|--+-.+ +.+.....+.+.+.+.|+|||.++-...
T Consensus 107 ~~~~~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIY-F~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 107 GGGYRVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIY-FDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGG-S-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred CCceeEChHHcCceEEEecccCCCC---cccCCccEEEecCEEEE-eCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1 1146777777766611 23478999999522111 1233456677788889999999886544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=72.16 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHh-----ccCCcccccEEEeecccccccccccCCc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVA-----DPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~-----~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
+.+.|||||+| |.++..+++.++.++|+.+|- ++...+.+++.. ..+.++..+++++.++..+.-. .. ++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEi--d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~-~~-~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDL--DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR-KL-AE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEEC--CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-hC-CC
Confidence 45689999999 888888888753489999999 665556666521 1123442589999887665322 11 46
Q ss_pred cccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcce
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+.|+||+.+.+.. +--. ..+ .| +. ...+.|+|||+++=+.
T Consensus 373 ~fDvIi~D~~~~~--~~~~-~~L~t~ef-~~--~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPS--NPAL-GKLYSVEF-YR--LLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCC--Ccch-hccchHHH-HH--HHHHhcCCCeEEEEec
Confidence 8999999864321 1101 112 11 11 1234699999876443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=64.54 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=57.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+.+.|||+||| |.++...++.| .+|+++|. ++.+.+.+++ +.- .+.++.++.+++. ++.++.|+|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~--s~~~l~~a~~----~~~---~~~~~~~d~~~~~---~~~~~fD~V 107 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDL--SPPMLAQARQ----KDA---ADHYLAGDIESLP---LATATFDLA 107 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEEC--CHHHHHHHHh----hCC---CCCEEEcCcccCc---CCCCcEEEE
Confidence 35689999999 98887777775 58999999 6654444433 221 2355666655543 334679999
Q ss_pred EccccccCCccccCcc-hhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQ-NLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~-~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|-.. +.|. .+. ..-..+.+.|+|||.++
T Consensus 108 ~s~~~-------l~~~~d~~--~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 108 WSNLA-------VQWCGNLS--TALRELYRVVRPGGVVA 137 (251)
T ss_pred EECch-------hhhcCCHH--HHHHHHHHHcCCCeEEE
Confidence 98631 1121 111 11122234799999765
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=64.87 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCC
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPG 437 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~ 437 (694)
....++......+++++|||+||| |.++.++++.| |++|||++.+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~ 107 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVG 107 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCC
Confidence 445566665545688999999999 99999999996 9999999993
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0028 Score=67.40 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=64.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.|-+|+|+=+| |-.|+-+|++| +.+|||+|- ++.|.++++++++.|+++ ++|+.|.|++.++... ...+|-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~di--NP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~---~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDI--NPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPE---LGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEec--CHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhc---cccCCEE
Confidence 47899999999 99999999997 555999999 999999999999999998 8999999998877542 1568877
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
|.=
T Consensus 261 im~ 263 (341)
T COG2520 261 IMG 263 (341)
T ss_pred EeC
Confidence 764
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0029 Score=68.88 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEeccccccccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~~~ 144 (694)
.+.+|||.=+|||+=++..++..+ +..+|++.|+|+++++.+++|++.|++++ ++++.+.|...+-. .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~---------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~ 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELA---------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--S 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-S---------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--H
T ss_pred CCceEEeccccccHHHHHHHHHcC---------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--h
Confidence 456899999999999999999843 23699999999999999999999999998 79999989877642 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|=.+++|+- .+.+..+++ .++.||.+.
T Consensus 118 ~~~~fD~IDlDPfGSp------~pfldsA~~-~v~~gGll~ 151 (377)
T PF02005_consen 118 RQERFDVIDLDPFGSP------APFLDSALQ-AVKDGGLLC 151 (377)
T ss_dssp STT-EEEEEE--SS--------HHHHHHHHH-HEEEEEEEE
T ss_pred ccccCCEEEeCCCCCc------cHhHHHHHH-HhhcCCEEE
Confidence 2478999998988852 344444444 677777653
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0057 Score=61.99 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=60.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.++...++.+...+|+++|. ++.+.+.+++. +. ++++++.+..++.. ++.+++|+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~~~~~~-----~~-~~~~~~~~d~~~~~---~~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDI--SAGMLAQAKTK-----LS-ENVQFICGDAEKLP---LEDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeC--hHHHHHHHHHh-----cC-CCCeEEecchhhCC---CCCCceeEE
Confidence 34689999999 877777777764567899999 55444344322 22 46788887665543 235789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..... ++ +...+ . ..+.+.|+|||.++
T Consensus 103 i~~~~l~~----~~-~~~~~--l-~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 103 VSNLALQW----CD-DLSQA--L-SELARVLKPGGLLA 132 (240)
T ss_pred EEhhhhhh----cc-CHHHH--H-HHHHHHcCCCcEEE
Confidence 98642110 11 11111 1 22234799999775
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00093 Score=65.33 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE 140 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~ 140 (694)
...+|+|.-||.|.-++..|..++ .|+++|++|.-+.+|++|++-.|++++|++++||+.++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~------------~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP------------YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC------------eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 346899999999988888888886 899999999999999999999999999999999987754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.005 Score=68.56 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=77.0
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+|..|||+|+| |-.++.+|+. ++..+|+|+|. ++...+.+++.+++.|+. +|+++.++..++.. ...++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Di--s~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~--~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDI--SREKIQLVEKHAKRLKLS--SIEIKIADAERLTE--YVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--eEEEEECchhhhhh--hhhccC
Confidence 3467899999999 8777666664 33579999999 666667788889999985 58998887665431 113679
Q ss_pred cEEEccccccCCccccCc--chhh--------------HHHHHhhcccccCCCceEEcceEE
Q 044245 481 DLLIGEPYYFGNDGMLPW--QNLR--------------FWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w--~~l~--------------f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|.|+..+-|.+ +|++.- +... .-....+ .++|+|||.++=+.|+
T Consensus 309 D~Vl~DaPCsg-~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a-~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 309 DRILVDAPCTS-LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQA-WKLLEKGGILLYSTCT 368 (431)
T ss_pred CEEEECCCCCC-CccccCChHHHHhCCHHHHHHHHHHHHHHHHHH-HHhcCCCCEEEEEECC
Confidence 99999865554 365530 1110 0012222 2579999988655555
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0056 Score=59.77 Aligned_cols=103 Identities=22% Similarity=0.181 Sum_probs=71.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--CCcEEEEeccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--GRNIKVINKRSDELEVG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--~~~I~vi~~~~~~l~~~ 142 (694)
.+|.+||.||-|.|+..-.+-++-+ .+=+.||.+|..++..|. +|+ .++|.++.+.+++...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-----------~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~- 163 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-----------DEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLN- 163 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-----------cceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhc-
Confidence 5789999999999999888766644 566889999998877665 454 3689999999988642
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.-.++.||-|.-+.++ -+.|+...... ..-++|+|+|++--
T Consensus 164 ~L~d~~FDGI~yDTy~--e~yEdl~~~hq-h~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYS--ELYEDLRHFHQ-HVVRLLKPEGVFSY 204 (271)
T ss_pred cccccCcceeEeechh--hHHHHHHHHHH-HHhhhcCCCceEEE
Confidence 1123569999865432 12233333333 33469999987743
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0031 Score=59.65 Aligned_cols=50 Identities=6% Similarity=-0.152 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhc-CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhH
Q 044245 389 WRLSMVMAMRNALQ-GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKG 442 (694)
Q Consensus 389 r~~~y~~Ai~~~~~-~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~ 442 (694)
+.+.+.+.|.+... ..+++.|||+||| |.++-..++.| . +|+++|. ++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~--~~~~ 56 (161)
T PF13489_consen 5 RYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDI--SPQM 56 (161)
T ss_dssp CCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEES--SHHH
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEEC--CHHH
Confidence 34556666766664 4567899999999 87766668886 5 9999999 5543
|
... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0095 Score=61.57 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCC----HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-----cCCC-----------
Q 044245 67 SCHVLDIGAGTG----LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-----NGMG----------- 126 (694)
Q Consensus 67 ~~~VLDiG~GtG----~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-----ngl~----------- 126 (694)
.-+|+-+||+|| .++|.+.+.++. ......+|+|.|+|..+++.|++=+=. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~-----~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~ 171 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK-----LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERG 171 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc-----ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeec
Confidence 468999999999 788888888751 011247999999999999998753210 1111
Q ss_pred ------------CcEEEEeccccccccccCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEcCc
Q 044245 127 ------------RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 127 ------------~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..|.+-..+..+-. ...++||+|+|- ..+++ +.....+.......|+|||.++-..
T Consensus 172 ~~~~y~v~~~ir~~V~F~~~NLl~~~---~~~~~fD~IfCR---NVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 172 GDGSYRVKEELRKMVRFRRHNLLDDS---PFLGKFDLIFCR---NVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred CCCcEEEChHHhcccEEeecCCCCCc---cccCCCCEEEEc---ceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 12333333322211 144679999994 22222 4445567777778999999987553
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=66.38 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~l~~~~ 143 (694)
.++.+|+|-.||+|.+.+.+.+..... ....+..+++|+|+++.++..|+.++..++.... ..+..++...-...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~---~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~- 120 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK---RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF- 120 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC---HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-
T ss_pred cccceeechhhhHHHHHHHHHHhhccc---ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-
Confidence 346789999999999988887742000 0000136899999999999999988877765433 45777776543311
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
...++||+|+++|...
T Consensus 121 ~~~~~~D~ii~NPPf~ 136 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFG 136 (311)
T ss_dssp TST--EEEEEEE--CT
T ss_pred ccccccccccCCCCcc
Confidence 1136899999998554
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0068 Score=65.76 Aligned_cols=76 Identities=5% Similarity=-0.046 Sum_probs=52.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.+.++|||||| |-..+.+|+......|+++|- +..+...+.+-+..+|+. +|.++++++..+.. .++.+.+|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI--~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~-~~~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEI--HTPSIEQVLKQIELLNLK--NLLIINYDARLLLE-LLPSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhh-hCCCCceeEE
Confidence 45789999999 755555555422578999999 444334455556778985 69999998765532 3455778888
Q ss_pred Ec
Q 044245 484 IG 485 (694)
Q Consensus 484 vs 485 (694)
..
T Consensus 197 ~l 198 (390)
T PRK14121 197 FV 198 (390)
T ss_pred EE
Confidence 65
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0059 Score=61.28 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~~ 470 (694)
++..|||+||| |-=+.+.|+.| -+|+++|- |+.|.+. ..++||+. ..+|+++.++..++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~--S~~Ai~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVEL--SEIAVEQ---FFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeC--CHHHHHH---HHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 45689999999 88888888886 68999999 7766443 23445442 13577777765554
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
.... .++.|.|+-=..+. .++ ...+--|. ..+.++|+|||.
T Consensus 107 ~~~~--~~~fD~i~D~~~~~----~l~-~~~R~~~~-~~l~~lLkpgG~ 147 (213)
T TIGR03840 107 TAAD--LGPVDAVYDRAALI----ALP-EEMRQRYA-AHLLALLPPGAR 147 (213)
T ss_pred Cccc--CCCcCEEEechhhc----cCC-HHHHHHHH-HHHHHHcCCCCe
Confidence 4211 13467766544322 233 22211111 123458999986
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0095 Score=62.53 Aligned_cols=119 Identities=23% Similarity=0.186 Sum_probs=83.1
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
...++..|||+++|.|.=+..++.... +.+.|+|+|.++.-+...+.++++.|.. +|.++..|......
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~---------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~- 150 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMG---------NKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDP- 150 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTT---------TTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHH-
T ss_pred cccccccccccccCCCCceeeeeeccc---------chhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccc-
Confidence 356789999999999988888887764 3479999999999999999999999986 78888877776531
Q ss_pred cCCCCCccEEEEcccccc--ccCCC----------hHH-------HHHHHHHhcc----CCCCeEEcCceEEE
Q 044245 143 VDIDSRADILVSEILDSE--LLGEG----------LIP-------TLQHAHDRLL----VENPLTVPCRVTTY 192 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~--l~~e~----------~l~-------~l~~~~~~~L----~p~G~iiP~~~~~~ 192 (694)
......||.|+.+..=++ .+... .+. .++....+++ +|||+++=..+++.
T Consensus 151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 111236999998763332 22211 111 3444445688 99998875555444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0081 Score=64.39 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=74.2
Q ss_pred HHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC--CcccccEEEeeccc
Q 044245 393 MVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN--CFSIDRVEILQKGK 467 (694)
Q Consensus 393 y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N--~l~~~~i~vi~~~~ 467 (694)
|.+++....-. ...+.||+||.| |.++..+.+..+..+|..||- .+...+++++....| ++...+++++.++.
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEi--D~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDI--DQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEEC--CHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 66665544221 134689999999 888887878655789999998 565566777766543 24336899998765
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
-+.-. . ..++.|+||...+.-. .+.-+ ..| .| |.+ ...+.|+|||+++
T Consensus 167 ~~~L~-~-~~~~yDvIi~D~~dp~-~~~~~-~~Lyt~eF-~~~-~~~~~L~p~Gvlv 217 (336)
T PLN02823 167 RAELE-K-RDEKFDVIIGDLADPV-EGGPC-YQLYTKSF-YER-IVKPKLNPGGIFV 217 (336)
T ss_pred HHHHh-h-CCCCccEEEecCCCcc-ccCcc-hhhccHHH-HHH-HHHHhcCCCcEEE
Confidence 54321 1 2478999999853321 01112 112 22 221 2234699999764
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.003 Score=58.84 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=46.1
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
+|+|+|+| |..++.+++.+...+|+++|+ .+.+.+.+++.++.|+++ ++++++.-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~--~~~~~~~l~~~~~~n~~~--~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEP--LPDAYEILEENVKLNNLP--NVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEec--CHHHHHHHHHHHHHcCCC--cEEEEEee
Confidence 48999999 999999999863348999999 777777888999999995 58888764
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0025 Score=66.48 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.|.+.. +|+.||++=+= |-.|+.||+.| |++|++|+. |..+.+.++++++.||++.++++++..++-+.-.
T Consensus 116 ~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~--S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~- 188 (286)
T PF10672_consen 116 KWVRKYA---KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDS--SKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK- 188 (286)
T ss_dssp HHHHHHC---TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES---HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-
T ss_pred HHHHHHc---CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeC--CHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-
Confidence 3445444 57899996543 67889998875 999999999 7888889999999999976799999887643211
Q ss_pred cc-CCccccEEEccc
Q 044245 474 DT-QQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l-~~~~vDvivsE~ 487 (694)
.+ ..++.|+||..|
T Consensus 189 ~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 189 RLKKGGRFDLIILDP 203 (286)
T ss_dssp HHHHTT-EEEEEE--
T ss_pred HHhcCCCCCEEEECC
Confidence 11 146899999995
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0048 Score=68.28 Aligned_cols=92 Identities=12% Similarity=0.000 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
++....-..+.....++..|+|+=|| |..++.+|+. +++|+++|- ++-|.+.|+++++.||+. +++++.+.+|
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi--~~~aV~~A~~NA~~n~i~--N~~f~~~~ae 351 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEI--SPEAVEAAQENAAANGID--NVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEec--CHHHHHHHHHHHHHcCCC--cEEEEeCCHH
Confidence 44444444444444566789999999 9999999975 799999999 787888899999999996 4999999999
Q ss_pred cccccccCCccccEEEccc
Q 044245 469 CLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~ 487 (694)
++......+.+.|+||-.|
T Consensus 352 ~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred HHhhhccccCCCCEEEECC
Confidence 8876432346789999986
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0071 Score=61.22 Aligned_cols=72 Identities=13% Similarity=-0.019 Sum_probs=55.2
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.++...++.| + +|+++|. ++.+.+.+++....+++. ++|+++.+..+ . . .+..|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~-~v~~~D~--s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~--~-~~~fD~ 130 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-A-KVVASDI--SPQMVEEARERAPEAGLA-GNITFEVGDLE---S--L-LGRFDT 130 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHhcCCc-cCcEEEEcCch---h--c-cCCcCE
Confidence 356789999999 99888888886 4 5999999 666666778777778876 78998887522 2 1 356899
Q ss_pred EEcc
Q 044245 483 LIGE 486 (694)
Q Consensus 483 ivsE 486 (694)
|++-
T Consensus 131 v~~~ 134 (230)
T PRK07580 131 VVCL 134 (230)
T ss_pred EEEc
Confidence 9874
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0054 Score=56.68 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC-CccEEEEccccccccC-CC--------hHHHHH
Q 044245 102 MVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS-RADILVSEILDSELLG-EG--------LIPTLQ 171 (694)
Q Consensus 102 ~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~-~~DlIvse~~~~~l~~-e~--------~l~~l~ 171 (694)
+|+|.|+.+.+++.++++++.+++.++|+++....+++.. .+++ ++|+++.|+ |+ |-+ +. .+..+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~--~i~~~~v~~~iFNL-GY-LPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE--YIPEGPVDAAIFNL-GY-LPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG--T--S--EEEEEEEE-SB--CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh--hCccCCcCEEEEEC-Cc-CCCCCCCCCcCcHHHHHHHH
Confidence 6999999999999999999999999899999999888763 3445 899999873 33 222 11 233444
Q ss_pred HHHHhccCCCCeEE
Q 044245 172 HAHDRLLVENPLTV 185 (694)
Q Consensus 172 ~~~~~~L~p~G~ii 185 (694)
.++ ++|+|||++.
T Consensus 77 ~al-~lL~~gG~i~ 89 (140)
T PF06962_consen 77 AAL-ELLKPGGIIT 89 (140)
T ss_dssp HHH-HHEEEEEEEE
T ss_pred HHH-HhhccCCEEE
Confidence 444 4899999875
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0036 Score=57.35 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+.+|+|+|.|.+-+.++|.|. ..-+++|.|+-.+.++|-.+-+.|...+..+..+|....++
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~-----------~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl----- 136 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGL-----------RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL----- 136 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCC-----------CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc-----
Confidence 46899999999999999999986 57899999999999999988889999899998888766543
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+..++. ++ .|.+++.+.+.++.-+..+.+++-+
T Consensus 137 ~dy~~vvi--Fg----aes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 137 RDYRNVVI--FG----AESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred cccceEEE--ee----hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 22333331 11 3667787877776555555555533
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.01 Score=61.89 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=69.1
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc-CC-cccccEEEeecc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP-NC-FSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~-N~-l~~~~i~vi~~~ 466 (694)
.|.+.+.... .....+.||+||+| |.++..+++.+.+++|..+|. ++...+.+++.... ++ +...+++++.++
T Consensus 57 ~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~vei--d~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 57 IYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDI--DEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred HHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeC--CHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 3555554321 11234589999999 777766667654789999999 55555566665432 22 322478887754
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
..+.-. .. .++.|+||+..++.. +. . ..| .| + ....+.|+|||+++=.
T Consensus 135 ~~~~l~-~~-~~~yDvIi~D~~~~~--~~-~-~~l~~~ef-~--~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 135 GFKFLA-DT-ENTFDVIIVDSTDPV--GP-A-ETLFTKEF-Y--ELLKKALNEDGIFVAQ 185 (270)
T ss_pred hHHHHH-hC-CCCccEEEEeCCCCC--Cc-c-cchhHHHH-H--HHHHHHhCCCcEEEEc
Confidence 332211 11 368999999864321 11 1 122 11 1 1223469999987644
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0077 Score=61.69 Aligned_cols=104 Identities=6% Similarity=-0.031 Sum_probs=68.4
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC-----C
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ-----Q 477 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~-----~ 477 (694)
+.+.||+||++ |+=++..|++ +.-.+|+++|. .+...++|++.++..|++ ++|+++.|...++-. .|. .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~--~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~-~l~~~~~~~ 154 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDI--NRENYELGLPVIQKAGVA-HKIDFREGPALPVLD-QMIEDGKYH 154 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH-HHHhccccC
Confidence 45689999998 7777766664 21248999999 565567889999999998 999999997655421 121 2
Q ss_pred ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 478 KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
++.|+|.-.--- +..+. |.... .++|+|||.|+=+
T Consensus 155 ~~fD~iFiDadK---~~Y~~-------y~~~~-l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADK---DNYIN-------YHKRL-IDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCH---HHhHH-------HHHHH-HHhcCCCeEEEEc
Confidence 467888765200 01111 22222 2469999987644
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0095 Score=59.55 Aligned_cols=121 Identities=11% Similarity=0.114 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec-c
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK-G 466 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~-~ 466 (694)
+..|-..+.+.. +.+.||.||++ |+=+++-|.+ ..-.+++++|. .+...+.|+++.++-|+. ++|+++.+ +
T Consensus 47 ~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~--~~e~~~~A~~n~~~ag~~-~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPDDGRLTTIER--DEERAEIARENLAEAGVD-DRIELLLGGD 120 (219)
T ss_pred HHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeC--CHHHHHHHHHHHHHcCCc-ceEEEEecCc
Confidence 455666666555 56789999999 8888777775 21358999999 666667899999999998 89999984 3
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILK 528 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~ 528 (694)
.-+.-.. +..+..|+|.-.- . -+--| .| . +...++|+|||+|+=+.+-.-
T Consensus 121 al~~l~~-~~~~~fDliFIDa---d-K~~yp----~~--l-e~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 121 ALDVLSR-LLDGSFDLVFIDA---D-KADYP----EY--L-ERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHHh-ccCCCccEEEEeC---C-hhhCH----HH--H-HHHHHHhCCCcEEEEeecccC
Confidence 2222111 2235677776641 0 00001 11 1 112236999999887765443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.005 Score=66.74 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=62.4
Q ss_pred CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc-----c---C-
Q 044245 407 PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD-----T---Q- 476 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~-----l---~- 476 (694)
+.|||++|| |.+|+..|+. +++|+++|. ++.+.+.++++++.||++ +++++.++++++-... + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~--~~~v~~vE~--~~~av~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN--FRRVLATEI--AKPSVNAAQYNIAANNID--NVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CcEEEEeccccHHHHHHHHh--CCEEEEEEC--CHHHHHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHhhccccccccc
Confidence 359999999 9999988885 679999999 777778899999999995 6999999887643210 1 0
Q ss_pred ----CccccEEEccccccCCccccC
Q 044245 477 ----QKKVDLLIGEPYYFGNDGMLP 497 (694)
Q Consensus 477 ----~~~vDvivsE~~~~~~e~~l~ 497 (694)
..+.|+|+-.|=.. |+.+
T Consensus 273 ~~~~~~~~d~v~lDPPR~---G~~~ 294 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPPRA---GLDP 294 (353)
T ss_pred cccccCCCCEEEECCCCC---CCcH
Confidence 12369999996322 5555
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0018 Score=63.51 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
...++|||||.|.++..+...+- .+++-+|.|-.|++.++. ++.+++ .+....+|-+.+++. .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v-----------ekli~~DtS~~M~~s~~~-~qdp~i--~~~~~v~DEE~Ldf~---e 135 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV-----------EKLIMMDTSYDMIKSCRD-AQDPSI--ETSYFVGDEEFLDFK---E 135 (325)
T ss_pred CcceeecccchhhhhHHHHhcch-----------hheeeeecchHHHHHhhc-cCCCce--EEEEEecchhccccc---c
Confidence 47899999999999988877764 689999999999998874 333444 344455666666542 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+|+|++.+--+ +-..+|......+..|+|+|.++
T Consensus 136 ns~DLiisSlslH---W~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 136 NSVDLIISSLSLH---WTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred cchhhhhhhhhhh---hhccCchHHHHHHHhcCCCccch
Confidence 6899999843211 12234544444556899999887
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=55.55 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=71.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+||=+|+-+|.-.-..+.-.. .+.|||||.++.+....-..++.. .||--|-+|++.-.-..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~----------~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG----------EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC----------CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhh
Confidence 56789999999999987766666543 478999999997765544444432 25666777776543222
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+-+.+|+|..+.-. .+....+..-.+.+|+++|.++
T Consensus 141 ~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 141 HLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred hhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEE
Confidence 344679999876322 3445556666678999999654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0049 Score=66.78 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=63.1
Q ss_pred hcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEE
Q 044245 383 IYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 383 ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~ 461 (694)
..|-..-..-|..|+.-.. ..++ .|||+=|| |-+|+..|+. +++|++||. .+.|.+.|+++++.||+ ++++
T Consensus 176 QvN~~~~~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~--~~~av~~A~~Na~~N~i--~n~~ 247 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEI--VEEAVEDARENAKLNGI--DNVE 247 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES---HHHHHHHHHHHHHTT----SEE
T ss_pred cCcHHHHHHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeC--CHHHHHHHHHHHHHcCC--Ccce
Confidence 3333333344555555433 3344 69999999 9999999997 689999999 77777889999999999 5799
Q ss_pred Eeeccccccccc-------------ccCCccccEEEccc
Q 044245 462 ILQKGKKCLTMD-------------DTQQKKVDLLIGEP 487 (694)
Q Consensus 462 vi~~~~~~~~~~-------------~l~~~~vDvivsE~ 487 (694)
++.+.++++... .+...++|+||-.|
T Consensus 248 f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDP 286 (352)
T PF05958_consen 248 FIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDP 286 (352)
T ss_dssp EEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE--
T ss_pred EEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcC
Confidence 999887765321 12223689999986
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=61.40 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
...+|||+|||+|.-...+..... . ..+++++|.|+.|++.++...+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~--------~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-S--------LKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-C--------ceeeeeecCCHHHHHHHHHHHhcc
Confidence 357999999999976555544433 1 258999999999999999877643
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0081 Score=58.72 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=64.4
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.++|||+| |+=++-.|=+---.+|+-+|+ ...=...++.+++.-|++ +++|+++++|+. ....++|+|+|=
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs--~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~----~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVES--VGKKVAFLKEVVRELGLS--NVEVINGRAEEP----EYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEES--SHHHHHHHHHHHHHHT-S--SEEEEES-HHHT----TTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeC--CchHHHHHHHHHHHhCCC--CEEEEEeeeccc----ccCCCccEEEee
Confidence 69999999 766655555432568999999 443334678999999995 799999998871 125789999996
Q ss_pred ccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 487 PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 487 ~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
-+ -+...+.- +. .++|++||.++--++.
T Consensus 123 Av-------~~l~~l~~-~~----~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 123 AV-------APLDKLLE-LA----RPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SS-------SSHHHHHH-HH----GGGEEEEEEEEEEESS
T ss_pred hh-------cCHHHHHH-HH----HHhcCCCCEEEEEcCC
Confidence 32 12122200 22 2368999987766553
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.03 Score=59.59 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=76.3
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE--
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV-- 131 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v-- 131 (694)
+.+...|...+.++..++|+|||+|.=+..+.++..+.. +..+.+++|+|..+++.+.+.+....++ .+++
T Consensus 64 ~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~------~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~ 136 (319)
T TIGR03439 64 KKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQK------KSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAG 136 (319)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcC------CCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEE
Confidence 445566777788888999999999965444444332100 1257999999999999999888744554 4554
Q ss_pred Eeccccccc--ccc-CCCCCccEEEEccccccccC-CC-hHHHHHHHHHh-ccCCCCeEEc
Q 044245 132 INKRSDELE--VGV-DIDSRADILVSEILDSELLG-EG-LIPTLQHAHDR-LLVENPLTVP 186 (694)
Q Consensus 132 i~~~~~~l~--~~~-~l~~~~DlIvse~~~~~l~~-e~-~l~~l~~~~~~-~L~p~G~iiP 186 (694)
+.++..+.. ++. .......+++. +|+.+-+ +. ....++..+++ .|+||+.++-
T Consensus 137 l~gdy~~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 137 LLGTYDDGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred EEecHHHHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 788765531 111 11233456654 4443322 11 22345556666 8999988764
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.023 Score=54.33 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 406 QPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.++|++||+| |..|-|.++. |+-....|.+- ++.|.++..+.++.|+. +|.+|+.+ +-. .|..++|||+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDi--Np~A~~~Tl~TA~~n~~---~~~~V~td---l~~-~l~~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDI--NPEALEATLETARCNRV---HIDVVRTD---LLS-GLRNESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecC--CHHHHHHHHHHHHhcCC---ccceeehh---HHh-hhccCCccEE
Confidence 4799999999 8887777775 43444456665 88998888899999986 47777653 322 2335899999
Q ss_pred Eccc-cccCCccccCcchhhHHHH-----HhhcccccCCCceEEcceEEEEEEEccC
Q 044245 484 IGEP-YYFGNDGMLPWQNLRFWKE-----RSKLDPVLSKEVIIMPFKGILKACAIFC 534 (694)
Q Consensus 484 vsE~-~~~~~e~~l~w~~l~f~~~-----r~~~~~~L~p~g~i~P~~a~l~~~~v~~ 534 (694)
|=-| |-.--+.-++-+.|.+.++ |+-.+++|..=--++-.++..|+..+..
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 9874 3222122222244555455 2222334432222223345577777654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=58.69 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH-----HcCCCCcEEEEecccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH-----VNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~-----~ngl~~~I~vi~~~~~~l~~ 141 (694)
...||++|+|+|+.++.+|..+. ..|.--|. +......+.+.. .++++..+.+..-++.+...
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~-----------~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~ 154 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG-----------AEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALD 154 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc-----------ceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCccc
Confidence 46799999999999999999765 47777676 445555444433 34444466665555555432
Q ss_pred ccCCCCC-ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchhhhhh
Q 044245 142 GVDIDSR-ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKL 204 (694)
Q Consensus 142 ~~~l~~~-~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~l~~~ 204 (694)
....... +|+|++- ...+.++..+.+...++.+|..++ ++ ..+.+......|+.
T Consensus 155 ~~~~~~~~~Dlilas---Dvvy~~~~~e~Lv~tla~ll~~~~-~i-----~l~~~lr~~~~~~~ 209 (248)
T KOG2793|consen 155 VSFRLPNPFDLILAS---DVVYEEESFEGLVKTLAFLLAKDG-TI-----FLAYPLRRDAAWEI 209 (248)
T ss_pred HhhccCCcccEEEEe---eeeecCCcchhHHHHHHHHHhcCC-eE-----EEEEecccchHHHH
Confidence 2223344 8999873 233345566666777777888887 22 23334455555553
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.013 Score=61.17 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=54.0
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CC--CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SK--TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~--a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
++..|||+||| |.++...++. +. ..+|+++|. ++.+.+.|++ + . ..++++.+..+++.. +.+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~--s~~~l~~A~~----~-~--~~~~~~~~d~~~lp~---~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDI--SKVAIKYAAK----R-Y--PQVTFCVASSHRLPF---ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC--CHHHHHHHHH----h-C--CCCeEEEeecccCCC---cCCce
Confidence 34679999999 8665544443 21 237999999 6655545432 1 2 246677766555532 34679
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++=. . + ..+ ..+.+.|||||.++
T Consensus 153 D~I~~~~--~------~-~~~------~e~~rvLkpgG~li 178 (272)
T PRK11088 153 DAIIRIY--A------P-CKA------EELARVVKPGGIVI 178 (272)
T ss_pred eEEEEec--C------C-CCH------HHHHhhccCCCEEE
Confidence 9998721 1 2 112 11234699999876
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0083 Score=65.25 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=63.5
Q ss_pred CcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 407 PLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 407 ~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
..|||+-+| |++++-+|+- +||++|+++|. ++.|.++++++++.|++. +++|++++...+-.. . .++.|+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~--n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~~l~~-~-~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDI--NPKAVESIKNNVEYNSVE--NIEVPNEDAANVLRY-R-NRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHHHHhCCC--cEEEEchhHHHHHHH-h-CCCCCEEE
Confidence 479999999 9999999986 25899999999 888999999999999984 689999876655321 1 35799999
Q ss_pred ccccc
Q 044245 485 GEPYY 489 (694)
Q Consensus 485 sE~~~ 489 (694)
-.||.
T Consensus 120 lDPfG 124 (374)
T TIGR00308 120 IDPFG 124 (374)
T ss_pred eCCCC
Confidence 99963
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.029 Score=56.42 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|++||.||-+- +.|+.+|..+. ..+|+.+|+++.+++..++.++..|++ |+.+..|.++- ++..+
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~----------~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~-LP~~~ 109 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGL----------PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDP-LPEEL 109 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT------------SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTT
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCC----------CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccccc-CCHHH
Confidence 489999999877 77888777664 369999999999999999999999995 99999888763 34556
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENP 182 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G 182 (694)
.++||+++++|.... +++--.+-..+. .|+..|
T Consensus 110 ~~~fD~f~TDPPyT~---~G~~LFlsRgi~-~Lk~~g 142 (243)
T PF01861_consen 110 RGKFDVFFTDPPYTP---EGLKLFLSRGIE-ALKGEG 142 (243)
T ss_dssp SS-BSEEEE---SSH---HHHHHHHHHHHH-TB-STT
T ss_pred hcCCCEEEeCCCCCH---HHHHHHHHHHHH-HhCCCC
Confidence 689999999987742 222223334444 555544
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0052 Score=53.66 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=47.0
Q ss_pred EEEecCC-chHHHHHHHc---CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 409 CVVADDS-VFLTICVARL---SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 409 vldig~G-giLsl~aA~~---g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
|||+||| |-.....++. |-..++++++. ++.+-+.+++..+..+. ++++++.+.+++.. ..++.|+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~--s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~---~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDI--SPEMLELAKKRFSEDGP---KVRFVQADARDLPF---SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES---HHHHHHHHHHSHHTTT---TSEEEESCTTCHHH---HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEEC--CHHHHHHHHHhchhcCC---ceEEEECCHhHCcc---cCCCeeEEE
Confidence 6999999 7665555554 21279999999 66666677777766555 57888888877653 246899999
Q ss_pred c
Q 044245 485 G 485 (694)
Q Consensus 485 s 485 (694)
+
T Consensus 73 ~ 73 (101)
T PF13649_consen 73 C 73 (101)
T ss_dssp E
T ss_pred E
Confidence 9
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.016 Score=59.43 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|-++....++..|++||.| |.|....++. +++|+|+|- .+....++++... .. ++++||++++-.+..
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEi--D~~l~~~L~~~~~---~~-~n~~vi~~DaLk~d~ 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEI--DRRLAEVLKERFA---PY-DNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEe--CHHHHHHHHHhcc---cc-cceEEEeCchhcCcc
Confidence 3445555555567799999999 9999999998 467999998 4443444444332 33 799999998776665
Q ss_pred cccCCccccEEEcc-ccccC
Q 044245 473 DDTQQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~~~ 491 (694)
..+. +.+-|||- ||+-+
T Consensus 91 ~~l~--~~~~vVaNlPY~Is 108 (259)
T COG0030 91 PSLA--QPYKVVANLPYNIS 108 (259)
T ss_pred hhhc--CCCEEEEcCCCccc
Confidence 4331 56889998 77664
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=58.37 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|-|+|||-+.++..+. . ..+|+..|.-. .| ++ ++..|+..+++++
T Consensus 73 ~~viaD~GCGdA~la~~~~-~------------~~~V~SfDLva-----------~n---~~--Vtacdia~vPL~~--- 120 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP-N------------KHKVHSFDLVA-----------PN---PR--VTACDIANVPLED--- 120 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S---------------EEEEESS------------SS---TT--EEES-TTS-S--T---
T ss_pred CEEEEECCCchHHHHHhcc-c------------CceEEEeeccC-----------CC---CC--EEEecCccCcCCC---
Confidence 5799999999999874332 1 14799999731 12 24 4558888888643
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.+|++|..+ .|++......+.++. |.|++||.+.
T Consensus 121 ~svDv~VfcL---SLMGTn~~~fi~EA~-RvLK~~G~L~ 155 (219)
T PF05148_consen 121 ESVDVAVFCL---SLMGTNWPDFIREAN-RVLKPGGILK 155 (219)
T ss_dssp T-EEEEEEES------SS-HHHHHHHHH-HHEEEEEEEE
T ss_pred CceeEEEEEh---hhhCCCcHHHHHHHH-heeccCcEEE
Confidence 6899998742 355666677777665 5999987654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0072 Score=54.09 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=44.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEee
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQ 464 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~ 464 (694)
.++++|+|||++ |=-|+.-+-.| |++|+|+|+ .+..+++.+++++.|++- |+.....
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~--~~kl~k~~een~k~nnI~-DK~v~~~ 84 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG-ASFVVQYEK--EEKLRKKWEEVCAYFNIC-DKAVMKG 84 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC-ccEEEEecc--CHHHHHHHHHHhhhheee-eceeecc
Confidence 468999999988 66666666665 999999999 787788888899888775 6554433
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0075 Score=57.66 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=51.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-ccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK-RSDELEV 141 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~-~~~~l~~ 141 (694)
.+.++.+|||+||..|.++..+.+... |++.|.+||+- .+. .. ..++++.+ |+++-..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~---------p~g~v~gVDll---------h~~--p~-~Ga~~i~~~dvtdp~~ 124 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVN---------PNGMVLGVDLL---------HIE--PP-EGATIIQGNDVTDPET 124 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhC---------CCceEEEEeee---------ecc--CC-CCcccccccccCCHHH
Confidence 366799999999999999999998875 56899999972 111 12 24666666 4544221
Q ss_pred -----ccCCCCCccEEEEcccc
Q 044245 142 -----GVDIDSRADILVSEILD 158 (694)
Q Consensus 142 -----~~~l~~~~DlIvse~~~ 158 (694)
...-..++|+|+|++..
T Consensus 125 ~~ki~e~lp~r~VdvVlSDMap 146 (232)
T KOG4589|consen 125 YRKIFEALPNRPVDVVLSDMAP 146 (232)
T ss_pred HHHHHHhCCCCcccEEEeccCC
Confidence 01112579999998643
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.011 Score=57.47 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCC---CCC-cEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEE-E
Q 044245 390 RLSMVMAMRNALQGR---VQP-LCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE-I 462 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~---~~~-~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~-v 462 (694)
.+.|++-|..++..+ .+| -||.|||| | =.-+.--+- -..|+.+++ ++.+.+++.+-++.|.-. +++ +
T Consensus 57 ~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDp--n~~mee~~~ks~~E~k~~--~~~~f 130 (252)
T KOG4300|consen 57 ADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDP--NEKMEEIADKSAAEKKPL--QVERF 130 (252)
T ss_pred HHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCC--CceEEEeCC--cHHHHHHHHHHHhhccCc--ceEEE
Confidence 455677777764332 222 47999999 5 222222122 368999999 888888998888888653 555 7
Q ss_pred eecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 463 LQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 463 i~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.+..|++. +|+..++|+||+-.--++.|.- . -.-..++++|+|||+++
T Consensus 131 vva~ge~l~--~l~d~s~DtVV~TlvLCSve~~-----~---k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 131 VVADGENLP--QLADGSYDTVVCTLVLCSVEDP-----V---KQLNEVRRLLRPGGRII 179 (252)
T ss_pred EeechhcCc--ccccCCeeeEEEEEEEeccCCH-----H---HHHHHHHHhcCCCcEEE
Confidence 777767654 4567899999987533322221 1 11123456899999764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.015 Score=59.07 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHhcCCCCC--cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-------C-cccccEEEee
Q 044245 396 AMRNALQGRVQP--LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-------C-FSIDRVEILQ 464 (694)
Q Consensus 396 Ai~~~~~~~~~~--~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-------~-l~~~~i~vi~ 464 (694)
+|.++....++. .|||+=+| |-.|+.+|..| ++ |+.+|. ++.+..++++.++.- . +. .+|++++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-~~-V~~vEr--~p~vaalL~dgL~ra~~~~~~~~~~~-~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CR-VRMLER--NPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIH 151 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-CE-EEEEEC--CHHHHHHHHHHHHHhhhccccchhhh-ceEEEEe
Confidence 455555444555 89999999 99999999997 76 999999 888777777766652 2 33 5899999
Q ss_pred cccccccccccCCccccEEEcccccc
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~ 490 (694)
+++.+.-. .+ ++..|+|-..|+|-
T Consensus 152 ~da~~~L~-~~-~~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALT-DI-TPRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHh-hC-CCCCcEEEECCCCC
Confidence 98765532 22 34689999999765
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0077 Score=59.76 Aligned_cols=117 Identities=8% Similarity=-0.017 Sum_probs=70.9
Q ss_pred CCCCCcEEEecC--C-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc---ccC
Q 044245 403 GRVQPLCVVADD--S-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD---DTQ 476 (694)
Q Consensus 403 ~~~~~~vldig~--G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~---~l~ 476 (694)
.+..|++++||+ | |+|.+.-|=-- -.+|+|+|- .+.+.++..++++.-|.. ++|+++++..-+.-.. +.+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~-dGrv~a~ei--d~~~~~~~~~~~k~agv~-~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPE-DGRVVAIEI--DADAYEIGLELVKLAGVD-HKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCC-CceEEEEec--ChHHHHHhHHHHHhcccc-ceeeeeecchhhhHHHHHhcCC
Confidence 345689999995 6 66654443321 258999999 667777888999999998 9999999975432111 112
Q ss_pred CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccCh
Q 044245 477 QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCP 535 (694)
Q Consensus 477 ~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~ 535 (694)
....|.+.- +-.--+|+....+.=+++++||+|+=+..--.. +|..+
T Consensus 147 ~~tfDfaFv-----------DadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 147 SGTFDFAFV-----------DADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred CCceeEEEE-----------ccchHHHHHHHHHHHhhcccccEEEEeccccCC-cccCc
Confidence 233444333 211111211112222479999999877765555 54443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=58.71 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc----CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL----SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~----g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
.|.+.+...+...++..|||+||| |.++...++. |-..+|+++|. ++.+.+.+++....+++ ++....
T Consensus 47 ~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~--s~~~l~~a~~~~~~~~~-----~~~~~~ 119 (232)
T PRK06202 47 LYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDP--DPRAVAFARANPRRPGV-----TFRQAV 119 (232)
T ss_pred HHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcC--CHHHHHHHHhccccCCC-----eEEEEe
Confidence 344444444443456789999999 8777666653 21248999999 66665666554444433 333333
Q ss_pred cccccccccCCccccEEEccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~ 487 (694)
.+.+.. .++++|+|++-.
T Consensus 120 ~~~l~~---~~~~fD~V~~~~ 137 (232)
T PRK06202 120 SDELVA---EGERFDVVTSNH 137 (232)
T ss_pred cccccc---cCCCccEEEECC
Confidence 333332 347899999963
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.023 Score=56.64 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=46.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++...++..+..+|+++|. ++.+.+.|++. +. .++++++...+ ..+.++.|+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDi--S~~~l~~A~~~-----~~--~~~~~~~d~~~----~~~~~sfD~V 109 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEI--NEYAVEKAKAY-----LP--NINIIQGSLFD----PFKDNFFDLV 109 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHhh-----CC--CCcEEEeeccC----CCCCCCEEEE
Confidence 45679999999 877666666422478999999 66655555432 22 35666665433 2235789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-.
T Consensus 110 ~~~~ 113 (204)
T TIGR03587 110 LTKG 113 (204)
T ss_pred EECC
Confidence 9864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=58.19 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=50.1
Q ss_pred EEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-ccEEEcc
Q 044245 409 CVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VDLLIGE 486 (694)
Q Consensus 409 vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vDvivsE 486 (694)
|.||||- |.|++.+.+.|.+++|+|+|-+..+. +-|++.++.+|+. ++|++.-++ -++ .+.+.. +|.||-=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL--~~A~~~i~~~~l~-~~i~~rlgd--GL~--~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL--EKAKENIAKYGLE-DRIEVRLGD--GLE--VLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH--HHHHHHHHHTT-T-TTEEEEE-S--GGG--G--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH--HHHHHHHHHcCCc-ccEEEEECC--ccc--ccCCCCCCCEEEEe
Confidence 6799998 99999999999899999999843443 4578888999998 999998875 222 233344 8877654
Q ss_pred c
Q 044245 487 P 487 (694)
Q Consensus 487 ~ 487 (694)
+
T Consensus 74 G 74 (205)
T PF04816_consen 74 G 74 (205)
T ss_dssp E
T ss_pred c
Confidence 4
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.024 Score=58.50 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=54.5
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..|||+|+| |.|+...++.+ .+|+++|. ++.+.+.+++.... . +++++++++..++....
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~--d~~~~~~l~~~~~~---~-~~v~v~~~D~~~~~~~~ 91 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEI--DPRLAEILRKLLSL---Y-ERLEVIEGDALKVDLPD 91 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEEC--CHHHHHHHHHHhCc---C-CcEEEEECchhcCChhH
Confidence 33444334467799999999 99998888884 57999999 55555555554432 2 57999999776654321
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
. ...+.|||-+
T Consensus 92 ~--d~~~~vvsNl 102 (253)
T TIGR00755 92 F--PKQLKVVSNL 102 (253)
T ss_pred c--CCcceEEEcC
Confidence 1 1114888874
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.024 Score=60.33 Aligned_cols=72 Identities=13% Similarity=-0.163 Sum_probs=51.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc---ccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF---SIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l---~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
++..|||+||| |.++...++.| .+|+++|. ++.+.+.+++.++..+. ...++++...+.++ + .++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~--S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-----l-~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDI--SAAMVAEAERRAKEALAALPPEVLPKFEANDLES-----L-SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHhcccccccccceEEEEcchhh-----c-CCCc
Confidence 56789999999 99999999985 48999999 67666677766654321 11356676654332 2 3678
Q ss_pred cEEEcc
Q 044245 481 DLLIGE 486 (694)
Q Consensus 481 DvivsE 486 (694)
|+|++-
T Consensus 214 D~Vv~~ 219 (315)
T PLN02585 214 DTVTCL 219 (315)
T ss_pred CEEEEc
Confidence 999875
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.072 Score=48.66 Aligned_cols=102 Identities=23% Similarity=0.219 Sum_probs=61.6
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc--cccccCCCC
Q 044245 70 VLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE--LEVGVDIDS 147 (694)
Q Consensus 70 VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~--l~~~~~l~~ 147 (694)
++|+|||+|... .+++... ....++++|.++.++..++......+.. .+.++.++... +.+.. ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 118 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---------RGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFED--SA 118 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---------CCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCC--CC
Confidence 999999999877 4444432 0137899999999998855444331111 16777777665 33211 03
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.+|++.+.... . ... .........+.|+|+|.++...
T Consensus 119 ~~d~~~~~~~~-~--~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 119 SFDLVISLLVL-H--LLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred ceeEEeeeeeh-h--cCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 78988432111 1 111 4556666677899988776443
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.033 Score=59.08 Aligned_cols=99 Identities=23% Similarity=0.234 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|||-=+|||+=++..|.... ..+|+.-|+||.+.+.+++|++.|... ++.++++|...+-. ...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~----------~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~--~~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG----------VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLH--ELH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC----------ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHH--hcC
Confidence 67999999999999999998875 248999999999999999999999544 57777788777653 234
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..||+|=.+|+|+- .|.+..+++ .++.+|.+-
T Consensus 120 ~~fd~IDiDPFGSP------aPFlDaA~~-s~~~~G~l~ 151 (380)
T COG1867 120 RAFDVIDIDPFGSP------APFLDAALR-SVRRGGLLC 151 (380)
T ss_pred CCccEEecCCCCCC------chHHHHHHH-HhhcCCEEE
Confidence 68999988888862 344444443 567777764
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=64.06 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
-+..++-|..+...-.|+.++|+=|| |..++..|+- +++||.||- ++.|...|++.++.||++ +.++|.|..|
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi--~~~aV~dA~~nA~~Ngis--Na~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEI--SPDAVEDAEKNAQINGIS--NATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeec--ChhhcchhhhcchhcCcc--ceeeeecchh
Confidence 34567778888877778999999999 9999999993 999999999 777778899999999996 7999999888
Q ss_pred cccccccCC--cccc-EEEccc
Q 044245 469 CLTMDDTQQ--KKVD-LLIGEP 487 (694)
Q Consensus 469 ~~~~~~l~~--~~vD-vivsE~ 487 (694)
++-...+.+ ..-+ +.|..|
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDP 463 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDP 463 (534)
T ss_pred hccchhcccCCCCCceEEEECC
Confidence 775544322 2345 566665
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.049 Score=57.34 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++..++|.-+|.|..+..++++.+ .++|+|+|.++.+++.|++..+. +.+++++++++..++...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~----------~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG----------TGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC----------CCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHHH
Confidence 35678999999999999999998753 27999999999999999988764 346899999998776410
Q ss_pred -cCCCCCccEEEEc
Q 044245 143 -VDIDSRADILVSE 155 (694)
Q Consensus 143 -~~l~~~~DlIvse 155 (694)
..-..++|.|+.+
T Consensus 86 ~~~~~~~vDgIl~D 99 (305)
T TIGR00006 86 DELLVTKIDGILVD 99 (305)
T ss_pred HhcCCCcccEEEEe
Confidence 0011357777765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.02 Score=55.75 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=49.1
Q ss_pred HHHHHHhcCCCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+.|.+-+. +++.|||+||| | +|..+..+. ..+++.+|-+ +.. +++ ..++|+ .||+++.++ .+
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid--~~~--v~~--cv~rGv-----~Viq~Dld~-gL 68 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEID--PDN--VAA--CVARGV-----SVIQGDLDE-GL 68 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhc--CCeEEEEecC--HHH--HHH--HHHcCC-----CEEECCHHH-hH
Confidence 45666665 68999999999 6 777777765 4678999883 321 221 223554 588886553 23
Q ss_pred cccCCccccEEEc
Q 044245 473 DDTQQKKVDLLIG 485 (694)
Q Consensus 473 ~~l~~~~vDvivs 485 (694)
...+.+..|.+|-
T Consensus 69 ~~f~d~sFD~VIl 81 (193)
T PF07021_consen 69 ADFPDQSFDYVIL 81 (193)
T ss_pred hhCCCCCccEEeh
Confidence 3456788997776
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.003 Score=54.85 Aligned_cols=97 Identities=15% Similarity=0.031 Sum_probs=40.3
Q ss_pred EEecCC-chH-HHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 410 VVADDS-VFL-TICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 410 ldig~G-giL-sl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
||+||| |.+ ..++++.. ..++++++.+ +.+...+++-...++. +..+.++-...++...+ ..++.|+|++=-
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s--~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDIS--PSMLERARERLAELGN--DNFERLRFDVLDLFDYD-PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESS--SSTTSTTCCCHHHCT-----EEEEE--SSS---CC-C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECC--HHHHHHHHHHhhhcCC--cceeEEEeecCChhhcc-cccccceehhhh
Confidence 799999 644 45555543 5789999994 3322222322333333 23444444333332222 135899999853
Q ss_pred cccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 488 YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 488 ~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
... .++ .+.- ..+ ++.+.|+|||.+
T Consensus 75 vl~----~l~--~~~~-~l~-~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLH----HLE--DIEA-VLR-NIYRLLKPGGIL 99 (99)
T ss_dssp TTS------S---HHH-HHH-HHTTT-TSS-EE
T ss_pred hHh----hhh--hHHH-HHH-HHHHHcCCCCCC
Confidence 111 111 2221 222 234689999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.053 Score=55.13 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|......+++.+||.+|-| |.|..-.-.+ |++|+|+|-. ..++.++ ++-++.-..+ ++.+|++|+.-..+.
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~D-prmvael-~krv~gtp~~-~kLqV~~gD~lK~d~-- 121 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEID-PRMVAEL-EKRVQGTPKS-GKLQVLHGDFLKTDL-- 121 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecC-cHHHHHH-HHHhcCCCcc-ceeeEEecccccCCC--
Confidence 34444445677899999999 9999888888 5899999984 4455555 4455555566 899999997554443
Q ss_pred cCCccccEEEcc-cc
Q 044245 475 TQQKKVDLLIGE-PY 488 (694)
Q Consensus 475 l~~~~vDvivsE-~~ 488 (694)
...|+.|+. ||
T Consensus 122 ---P~fd~cVsNlPy 133 (315)
T KOG0820|consen 122 ---PRFDGCVSNLPY 133 (315)
T ss_pred ---cccceeeccCCc
Confidence 346888886 44
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.06 Score=53.21 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=66.5
Q ss_pred hhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC
Q 044245 46 MLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM 125 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl 125 (694)
+++...-.-+|.+.|.+. +.+.|+++|.-.|.-+++.|.... ...+.++|++||++-... .++.++.+.+
T Consensus 14 i~q~P~Dm~~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~------~~~~~~~VigiDIdir~~--~~~a~e~hp~ 83 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL--KPDLIIETGIAHGGSLIFWASMLE------LLGGKGKVIGIDIDIRPH--NRKAIESHPM 83 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH----SEEEEE--TTSHHHHHHHHHHH------HTT---EEEEEES-GTT----S-GGGG---
T ss_pred hhcCHHHHHHHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHH------HhCCCceEEEEeCCcchh--chHHHhhccc
Confidence 456666677888888773 468999999999866665553321 001247999999953332 2233444667
Q ss_pred CCcEEEEecccccccccc---CC--CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 126 GRNIKVINKRSDELEVGV---DI--DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 126 ~~~I~vi~~~~~~l~~~~---~l--~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++|++++|++.+...-. .+ +....+|+- ++....+..+..+.. ...++++|+.+|
T Consensus 84 ~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVil---Ds~H~~~hvl~eL~~-y~plv~~G~Y~I 144 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQVRELASPPHPVLVIL---DSSHTHEHVLAELEA-YAPLVSPGSYLI 144 (206)
T ss_dssp -TTEEEEES-SSSTHHHHTSGSS----SSEEEEE---SS----SSHHHHHHH-HHHT--TT-EEE
T ss_pred cCceEEEECCCCCHHHHHHHHHhhccCCceEEEE---CCCccHHHHHHHHHH-hCccCCCCCEEE
Confidence 789999999988754211 11 123446664 466666778887766 677999999875
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.081 Score=53.66 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=44.0
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..||||||| |.++...++.+ ..+|+++|. ++.+.+.+++ . .+.+++..+++. ++.+..|+|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~--S~~Ml~~a~~---~-------~~~~~~d~~~lp---~~d~sfD~v~ 115 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDY--AENMLKMNLV---A-------DDKVVGSFEALP---FRDKSFDVVM 115 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECC--CHHHHHHHHh---c-------cceEEechhhCC---CCCCCEEEEE
Confidence 5689999999 98877777763 259999999 5654444432 1 123455555543 2357899999
Q ss_pred cc
Q 044245 485 GE 486 (694)
Q Consensus 485 sE 486 (694)
+-
T Consensus 116 ~~ 117 (226)
T PRK05785 116 SS 117 (226)
T ss_pred ec
Confidence 95
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.021 Score=57.52 Aligned_cols=79 Identities=25% Similarity=0.186 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH---HcCC-----CCcEEEEecccccc
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH---VNGM-----GRNIKVINKRSDEL 139 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~---~ngl-----~~~I~vi~~~~~~l 139 (694)
.+|||.-+|-|.=++.+|..|. +|+++|.||.+..+.+.-++ ...- ..+|+++++|..++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~------------~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC------------KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred CEEEECCCcchHHHHHHHccCC------------eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 4899999999999999998874 89999999988777654332 2221 14899999998886
Q ss_pred ccccCCCCCccEEEEcccccc
Q 044245 140 EVGVDIDSRADILVSEILDSE 160 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~ 160 (694)
-. .....+|+|..+||...
T Consensus 145 L~--~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 145 LR--QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CC--CHSS--SEEEE--S---
T ss_pred Hh--hcCCCCCEEEECCCCCC
Confidence 42 22368999999998754
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.056 Score=56.11 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
...+.|.+.+...++..|+++|.| |.|+-..++.| ++|+++|. .+...+.+++.... . +++++|+++.-++
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~--d~~~~~~L~~~~~~---~-~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEI--DPDLAKHLKERFAS---N-PNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEES--SHHHHHHHHHHCTT---C-SSEEEEES-TTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecC--cHhHHHHHHHHhhh---c-ccceeeecchhcc
Confidence 445556666655477899999999 99998889984 89999999 55555555554442 2 6899999988776
Q ss_pred cccccCCccccEEEcc-cccc
Q 044245 471 TMDDTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE-~~~~ 490 (694)
............|||- ||+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp CGGGHCSSSEEEEEEEETGTG
T ss_pred ccHHhhcCCceEEEEEecccc
Confidence 6543212456678886 6644
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.043 Score=51.26 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=47.0
Q ss_pred CCCCcEEEecCC-chHHHHHHH-----cCCCceEEEcCCCcChhHHHHHHHHhccCC--cccccEEEeeccccccccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVAR-----LSKTAHVLSLLPGLGDKGAQYLRTVADPNC--FSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~-----~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--l~~~~i~vi~~~~~~~~~~~l 475 (694)
.+...|+|+|+| |.||++.|. .- --+|+++|.. +...+.+.+..+..+ +. .+++.+++...+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCN--ESLVESAQKRAQKLGSDLE-KRLSFIQGDIADESS--- 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECC--cHHHHHHHHHHHHhcchhh-ccchhhccchhhhcc---
Confidence 345689999999 999999998 42 4799999984 433344444455444 43 456666554332221
Q ss_pred CCccccEEEc
Q 044245 476 QQKKVDLLIG 485 (694)
Q Consensus 476 ~~~~vDvivs 485 (694)
....+++|+
T Consensus 97 -~~~~~~~vg 105 (141)
T PF13679_consen 97 -SDPPDILVG 105 (141)
T ss_pred -cCCCeEEEE
Confidence 345677776
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.17 Score=51.14 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=71.3
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCC------ceEEEcCCCcChhHHHHHHHHhccCCcccc-cEEEeecccccccc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKT------AHVLSLLPGLGDKGAQYLRTVADPNCFSID-RVEILQKGKKCLTM 472 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a------~~V~ave~~~~~~~~~~~~~i~~~N~l~~~-~i~vi~~~~~~~~~ 472 (694)
....++..|||+++| |-+++-..++-++ ++|+-++- ++.+-..+++=.++-++..+ ++.++.++.|++..
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di--np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI--NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC--CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence 344566789999999 9888888776445 78999888 55554556655555677622 38999999998876
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+ ....|....-- |+=.|..+.- -.+++| |-|||||+++
T Consensus 174 d---d~s~D~yTiaf------GIRN~th~~k-~l~EAY-RVLKpGGrf~ 211 (296)
T KOG1540|consen 174 D---DDSFDAYTIAF------GIRNVTHIQK-ALREAY-RVLKPGGRFS 211 (296)
T ss_pred C---CCcceeEEEec------ceecCCCHHH-HHHHHH-HhcCCCcEEE
Confidence 4 46677665431 2223332211 344454 3699999665
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.06 Score=54.25 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|-|+|||-+-++. +. ..+|+..|.- .. +=.++..|+..+++.+
T Consensus 181 ~~vIaD~GCGEakiA~---~~------------~~kV~SfDL~--------------a~--~~~V~~cDm~~vPl~d--- 226 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SE------------RHKVHSFDLV--------------AV--NERVIACDMRNVPLED--- 226 (325)
T ss_pred ceEEEecccchhhhhh---cc------------ccceeeeeee--------------cC--CCceeeccccCCcCcc---
Confidence 5789999999987754 11 2579999862 11 2234558888887643
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
+.+|++|..+ .+++..+...+.++ .|.|++||.+ |++-|.|.
T Consensus 227 ~svDvaV~CL---SLMgtn~~df~kEa-~RiLk~gG~l-------~IAEv~SR 268 (325)
T KOG3045|consen 227 ESVDVAVFCL---SLMGTNLADFIKEA-NRILKPGGLL-------YIAEVKSR 268 (325)
T ss_pred CcccEEEeeH---hhhcccHHHHHHHH-HHHhccCceE-------EEEehhhh
Confidence 7899988632 34556666655555 5699999865 55555554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.066 Score=53.93 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeeccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKC 469 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~ 469 (694)
.++..||+.||| |.=.++.|+.| -+|+++|- ++.|.+.+ .+.|++. .++|+++.++.=+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDl--s~~Ai~~~---~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDL--SPTAIEQA---FEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES---HHHHHHH---HHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEec--CHHHHHHH---HHHhccCCCcccccceeeecCCceEEEEccccc
Confidence 345689999999 87777777776 58999999 77764433 3334431 1467888887655
Q ss_pred ccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
++.... .++|+|.==.++. .|| ..++=-|++. +.++|+|||.
T Consensus 109 l~~~~~--g~fD~iyDr~~l~----Alp-p~~R~~Ya~~-l~~ll~p~g~ 150 (218)
T PF05724_consen 109 LPPEDV--GKFDLIYDRTFLC----ALP-PEMRERYAQQ-LASLLKPGGR 150 (218)
T ss_dssp GGGSCH--HSEEEEEECSSTT----TS--GGGHHHHHHH-HHHCEEEEEE
T ss_pred CChhhc--CCceEEEEecccc----cCC-HHHHHHHHHH-HHHHhCCCCc
Confidence 554332 4688886545444 355 3454334443 2457899887
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.028 Score=57.76 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=34.2
Q ss_pred HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHH
Q 044245 61 DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMV 113 (694)
Q Consensus 61 ~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~ 113 (694)
.+....+++|||+|||+|+.++.+.+.+. ..+...|.|...+
T Consensus 111 ~~~~~~~k~vLELgCg~~Lp~i~~~~~~~-----------~~~~fqD~na~vl 152 (282)
T KOG2920|consen 111 AQMSFSGKRVLELGCGAALPGIFAFVKGA-----------VSVHFQDFNAEVL 152 (282)
T ss_pred hheEecCceeEecCCcccccchhhhhhcc-----------ceeeeEecchhhe
Confidence 34456789999999999999999999985 5778888776555
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.098 Score=50.99 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCc---------eEEEcCCCcChhHHHHHHHHhccCCcccccEE
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTA---------HVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~---------~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~ 461 (694)
....|+.+.....++.+|+|-=|| |-+.+-||..+... ++++.+- ++.+.+.++++++..|+. +.|.
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di--~~~~v~~a~~N~~~ag~~-~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDI--DPKAVRGARENLKAAGVE-DYID 91 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEES--SHHHHHHHHHHHHHTT-C-GGEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCC--CHHHHHHHHHHHHhcccC-CceE
Confidence 455566666655677899997788 66666666553222 2778888 666777889999999998 8999
Q ss_pred EeecccccccccccCCccccEEEccc-cc
Q 044245 462 ILQKGKKCLTMDDTQQKKVDLLIGEP-YY 489 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~~~vDvivsE~-~~ 489 (694)
+.+.+..++.. ..+.+|+||+.| |.
T Consensus 92 ~~~~D~~~l~~---~~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 92 FIQWDARELPL---PDGSVDAIVTNPPYG 117 (179)
T ss_dssp EEE--GGGGGG---TTSBSCEEEEE--ST
T ss_pred EEecchhhccc---ccCCCCEEEECcchh
Confidence 99988887772 246899999994 53
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.063 Score=54.40 Aligned_cols=82 Identities=20% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
...+...+....+|+|||||.=.+++......+ ...++|+|++..+++...+.....+...++.+ .|.
T Consensus 96 Y~~if~~~~~p~sVlDigCGlNPlalp~~~~~~----------~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v--~Dl 163 (251)
T PF07091_consen 96 YDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAP----------GATYIAYDIDSQLVEFLNAFLAVLGVPHDARV--RDL 163 (251)
T ss_dssp HHHHCCCS---SEEEEET-TTCHHHHHTTTSST----------T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE--E-T
T ss_pred HHHHHhcCCCCchhhhhhccCCceehhhcccCC----------CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE--eee
Confidence 333333344468999999999888887654432 35899999999999999999998887655554 343
Q ss_pred cccccccCCCCCccEEEE
Q 044245 137 DELEVGVDIDSRADILVS 154 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvs 154 (694)
..-. ..+..|+.+.
T Consensus 164 ~~~~----~~~~~DlaLl 177 (251)
T PF07091_consen 164 LSDP----PKEPADLALL 177 (251)
T ss_dssp TTSH----TTSEESEEEE
T ss_pred eccC----CCCCcchhhH
Confidence 2211 1256888764
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.022 Score=62.79 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhccC----C--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEE---cCCHHHHHHHHHHHHHc
Q 044245 53 NRAYRLAIDKMVTK----S--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTAC---ESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 53 ~~~y~~ai~~~~~~----~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~av---E~s~~~~~~A~~~~~~n 123 (694)
...|.+.|.+.+.. + .++||+|||+|.++..+..++- .+..+ |..+..++.| .+.
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V------------~t~s~a~~d~~~~qvqfa----leR 161 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV------------TTMSFAPNDEHEAQVQFA----LER 161 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc------------eEEEcccccCCchhhhhh----hhc
Confidence 35677777776532 3 4799999999999988887752 22222 2323334443 335
Q ss_pred CCCCcEEEEeccccccccccCCCCCccEEEEccccccccC-CChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 124 GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 124 gl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
|++.-+.++ -...+++++ ..||+|=|. .+++. ...-..++-.++|+|+|||.++-..-.+|
T Consensus 162 Gvpa~~~~~--~s~rLPfp~---~~fDmvHcs---rc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 162 GVPAMIGVL--GSQRLPFPS---NAFDMVHCS---RCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred Ccchhhhhh--ccccccCCc---cchhhhhcc---cccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 665433332 134555543 689998552 22221 00001244567889999999987666666
|
; GO: 0008168 methyltransferase activity |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=55.03 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCCCcEEE--ecCCchHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec-cccc
Q 044245 393 MVMAMRNALQGRVQPLCVV--ADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK-GKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vld--ig~GgiLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~-~~~~ 469 (694)
+.+|+.+...-.+|..||| .|+|||| +-|.-.| .+||.++- ...+.+=++.+.+.-|++ ...++.. ++++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiL-iEagl~G--~~viG~Di--d~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~ 257 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGIL-IEAGLMG--ARVIGSDI--DERMVRGAKINLEYYGIE--DYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHH-HhhhhcC--ceEeecch--HHHHHhhhhhhhhhhCcC--ceeEEEeccccc
Confidence 5667777777778889999 6777877 5555566 47889877 333334468888888874 5666666 6666
Q ss_pred ccccccCCccccEEEcccccc
Q 044245 470 LTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~ 490 (694)
+. |+...+|.|+++|.|-
T Consensus 258 lp---l~~~~vdaIatDPPYG 275 (347)
T COG1041 258 LP---LRDNSVDAIATDPPYG 275 (347)
T ss_pred CC---CCCCccceEEecCCCC
Confidence 65 4444699999998764
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.091 Score=52.47 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCcEEEecCC-chHHHHHH--HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-cc
Q 044245 406 QPLCVVADDS-VFLTICVA--RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VD 481 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA--~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vD 481 (694)
++.++|||.| |+=++-.| .. ..+|+-+|+....+ ..++++.+.-|+ ++++++++++|++... .+ .|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p--~~~vtLles~~Kk~--~FL~~~~~eL~L--~nv~i~~~RaE~~~~~----~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP--DLKVTLLESLGKKI--AFLREVKKELGL--ENVEIVHGRAEEFGQE----KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc--CCcEEEEccCchHH--HHHHHHHHHhCC--CCeEEehhhHhhcccc----cccCc
Confidence 4789999999 76555433 33 34599999954333 467999999999 4899999999988742 22 99
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+|.|=-
T Consensus 138 ~vtsRA 143 (215)
T COG0357 138 VVTSRA 143 (215)
T ss_pred EEEeeh
Confidence 999964
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.087 Score=54.14 Aligned_cols=121 Identities=10% Similarity=0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+++|...... ...+.||.||.| |.++..+.+....++|..||- .+...+++++.... +++...|++++.++
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEi--D~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEI--DPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEec--ChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 466666544321 135789999998 877777778754689999988 56555666665543 22333699998876
Q ss_pred cccccccccCCc-cccEEEccccccCCccccCcc--hhhHHHHHhhcccccCCCceEEc
Q 044245 467 KKCLTMDDTQQK-KVDLLIGEPYYFGNDGMLPWQ--NLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 467 ~~~~~~~~l~~~-~vDvivsE~~~~~~e~~l~w~--~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
.-..-.. ..+ +.|+||...+.-. +.-+ . ...|+-.. ++.|+|||+++=
T Consensus 139 g~~~l~~--~~~~~yDvIi~D~~dp~--~~~~-~l~t~ef~~~~---~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 139 GRKFLKE--TQEEKYDVIIVDLTDPD--GPAP-NLFTREFYQLC---KRRLKPDGVLVL 189 (246)
T ss_dssp HHHHHHT--SSST-EEEEEEESSSTT--SCGG-GGSSHHHHHHH---HHHEEEEEEEEE
T ss_pred hHHHHHh--ccCCcccEEEEeCCCCC--CCcc-cccCHHHHHHH---HhhcCCCcEEEE
Confidence 5433221 134 8999999875421 2221 1 12332222 235999997653
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.22 Score=53.69 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=84.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
.++|.+|||+.+-.|.=+...|..-. ..+.|+|.|.|.+-+...+.++.+.|+. +..+.+.|..+++...
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMk---------n~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMK---------NTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKE 308 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHc---------CCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccc
Confidence 45789999999999865555554443 2479999999999999999999999986 6667777877765322
Q ss_pred CCCCCccEEEEcccccc--ccCCC-----------------hHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 144 DIDSRADILVSEILDSE--LLGEG-----------------LIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~--l~~e~-----------------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
.+++||-|+.+-.=++ ++... +...++...-.++++||+++=..+++- +-|.+
T Consensus 309 -~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~--~~ENE 380 (460)
T KOG1122|consen 309 -FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT--VEENE 380 (460)
T ss_pred -cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc--hhhhH
Confidence 4458998887643333 33211 111233333348999999998777766 44554
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.13 Score=51.91 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-------------cccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-------------IDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-------------~~~i~vi~~~~~~~ 470 (694)
++..||+.||| |.=..+.|+.| . +|+++|- |+.|.+ +..+.|++. ...|+++.++.-++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G-~-~V~GvDl--S~~Ai~---~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG-V-KVIGIEL--SEKAVL---SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC-C-cEEEEec--CHHHHH---HHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 45689999999 98777778886 4 6999999 777643 333444432 24677777765544
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
....-...++|.|.==.++. .|| ..++--|++. +.++|+|||.+
T Consensus 116 ~~~~~~~~~fD~VyDra~~~----Alp-p~~R~~Y~~~-l~~lL~pgg~l 159 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYI----ALP-NDLRTNYAKM-MLEVCSNNTQI 159 (226)
T ss_pred CccccccCCcCeeeeehhHh----cCC-HHHHHHHHHH-HHHHhCCCcEE
Confidence 32100014577754333333 456 4454334433 24578888763
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.039 Score=56.65 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----------------C---
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----------------G--- 126 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----------------~--- 126 (694)
+|.++||||||+-+..+..|.... .+|+..|..+...+..++-++..+- .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f-----------~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~ 124 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF-----------EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKW 124 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE-----------EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh-----------cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchh
Confidence 467899999999766555444433 5899999999888776665543211 0
Q ss_pred --------CcEE-EEecccccccc-c--cCCCCCccEEEEccccccccCCChHHHH---HHHHHhccCCCCeEEc
Q 044245 127 --------RNIK-VINKRSDELEV-G--VDIDSRADILVSEILDSELLGEGLIPTL---QHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 --------~~I~-vi~~~~~~l~~-~--~~l~~~~DlIvse~~~~~l~~e~~l~~l---~~~~~~~L~p~G~iiP 186 (694)
..|+ ++..|...... + ..+++++|+|++-..--.. -+ .++.. ...+.++|+|||.++-
T Consensus 125 ~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a-~~-d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 125 EEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA-CK-DLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH--S-SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH-cC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1233 56666655331 1 1345679999873211000 11 13333 3344578999998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.14 Score=57.36 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=75.3
Q ss_pred CCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 404 RVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.+|..|||+.+| | =-..+|+..++...|+|+|.+ +.-.+.+++.+++-|+. +|.|+..+...+.. .+ ++.+|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~--~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~-~~-~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYS--ASRVKVLHANISRCGVS--NVALTHFDGRVFGA-AL-PETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCC--eEEEEeCchhhhhh-hc-hhhcC
Confidence 367899999998 4 445556666545699999994 33234667888888985 58888776665432 12 46799
Q ss_pred EEEccccccCCccccCcc--hhhHH--------------HHHhhcccccCCCceEEcceEEE
Q 044245 482 LLIGEPYYFGNDGMLPWQ--NLRFW--------------KERSKLDPVLSKEVIIMPFKGIL 527 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~--~l~f~--------------~~r~~~~~~L~p~g~i~P~~a~l 527 (694)
.|+-..=+++ +||+.=. ....| ..+++ -++|||||+++=+.|++
T Consensus 186 ~ILvDaPCSG-~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A-~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 186 AILLDAPCSG-EGTVRKDPDALKNWSPESNLEIAATQRELIESA-FHALKPGGTLVYSTCTL 245 (470)
T ss_pred eEEEcCCCCC-CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHH-HHHcCCCcEEEEECCCC
Confidence 9998754555 6776511 11111 11222 24799999998777764
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.12 Score=50.95 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.++...++.+ ...++++|. ++.+.+.+ +.+ .++++.+..++. ...++.++.|+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~--s~~~i~~a----~~~-----~~~~~~~d~~~~-l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEI--DQDGVLAC----VAR-----GVNVIQGDLDEG-LEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeC--CHHHHHHH----HHc-----CCeEEEEEhhhc-ccccCCCCcCEE
Confidence 46789999999 87766666654 457899998 55432222 222 355666654431 111334679999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-.
T Consensus 80 i~~~ 83 (194)
T TIGR02081 80 ILSQ 83 (194)
T ss_pred EEhh
Confidence 9964
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.14 Score=53.15 Aligned_cols=41 Identities=17% Similarity=-0.025 Sum_probs=29.3
Q ss_pred CCcEEEecCC-ch----HHHHHHHcCC-----CceEEEcCCCcChhHHHHHHH
Q 044245 406 QPLCVVADDS-VF----LTICVARLSK-----TAHVLSLLPGLGDKGAQYLRT 448 (694)
Q Consensus 406 ~~~vldig~G-gi----Lsl~aA~~g~-----a~~V~ave~~~~~~~~~~~~~ 448 (694)
+..|+|+||| |- |+|.+++.++ ..+|+|++. ++.+-+.|++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di--s~~~L~~Ar~ 150 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI--DLKALEKARA 150 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC--CHHHHHHHHc
Confidence 3589999999 74 7888887642 248999999 6655455544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.11 Score=54.94 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
...+|+|.|.|.++-.+....+ +|-+++.+.+.+..++.... .| |+-+.+++..- . .
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp------------~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-----~-P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP------------HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-----T-P 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC------------CCceeecCHHHHHhhhhhhc-CC----cceeccccccc-----C-C
Confidence 7899999999988888887654 68889988877766665543 33 66677776542 2 2
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.|+|+.-|+-+.+-.|+....+...++ -|.|+|+++
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~-sL~~~GkIi 272 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKK-SLPPGGKII 272 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHH-hCCCCCEEE
Confidence 5789998887766666666666666554 789988775
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.32 Score=52.80 Aligned_cols=118 Identities=22% Similarity=0.237 Sum_probs=73.5
Q ss_pred chHHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 41 TSYLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 41 ~~~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
.....++.+..-......+..+...++.+|+-+|||+ |+++..+++..+ ..+|+++|.++.-++.|++.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~G----------a~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLG----------ASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CceEEEeCCCHHHHHHHHHh
Confidence 3445667777655444445555555566999999996 999888888765 47999999999999999863
Q ss_pred HHHcCCCCcEEEEecc-----ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 120 LHVNGMGRNIKVINKR-----SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 120 ~~~ngl~~~I~vi~~~-----~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
. +. +.+.....+ ..++. ....+|+++ |..+ ....+..+++ +++++|.++
T Consensus 213 ~---g~-~~~~~~~~~~~~~~~~~~t----~g~g~D~vi-e~~G-------~~~~~~~ai~-~~r~gG~v~ 266 (350)
T COG1063 213 G---GA-DVVVNPSEDDAGAEILELT----GGRGADVVI-EAVG-------SPPALDQALE-ALRPGGTVV 266 (350)
T ss_pred C---CC-eEeecCccccHHHHHHHHh----CCCCCCEEE-ECCC-------CHHHHHHHHH-HhcCCCEEE
Confidence 2 11 111111111 00111 113599987 3333 2445555554 889999875
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.13 Score=55.63 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=75.7
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
.-+.++..++|+|||.|..+...+.... .++++++.|+.-+..+.......++.++-.++.++.-..++
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~-----------~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKK-----------AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF 174 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhcc-----------CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC
Confidence 3455677899999999999888887764 68999999998888888777777776666666666665544
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++ ..||.+-+- ..+.+.+....+...+.+.++|||..+
T Consensus 175 ed---n~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 175 ED---NTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred Cc---cccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEE
Confidence 32 578877541 112233334455555566799999876
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.013 Score=56.83 Aligned_cols=102 Identities=25% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.++||+|+|.|-++...+-.. .+|||.|.|..|....++. +.. .+..++ +.+ -.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------------eevyATElS~tMr~rL~kk----~yn-Vl~~~e--w~~------t~ 167 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------------EEVYATELSWTMRDRLKKK----NYN-VLTEIE--WLQ------TD 167 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------------HHHHHHHhhHHHHHHHhhc----CCc-eeeehh--hhh------cC
Confidence 4789999999999998887765 3899999999998777642 331 122211 111 12
Q ss_pred CCccEEEE-ccccccccCCChHHHHHHHHHhccCC-CCeEEcCceEEEEEEec
Q 044245 147 SRADILVS-EILDSELLGEGLIPTLQHAHDRLLVE-NPLTVPCRVTTYGQLVE 197 (694)
Q Consensus 147 ~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~p-~G~iiP~~~~~~~~~ve 197 (694)
-++|+|.| ++++-+. ..-.++.-+...|+| +|++|-.-.--|.--||
T Consensus 168 ~k~dli~clNlLDRc~----~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCF----DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred ceeehHHHHHHHHhhc----ChHHHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 47999877 3222211 122345555567777 77776544433333334
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.3 Score=49.30 Aligned_cols=99 Identities=10% Similarity=0.086 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcEEEecCCchHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 387 GEWRLSMVMAMRNALQGRVQPLCVVADDSVFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 387 ~~r~~~y~~Ai~~~~~~~~~~~vldig~GgiLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
+.-|.-.|.++....-.+.||.+|++|+.=+.|+.+|-.|..++|+-++- .+..-.++++.++..|++ |+.++-+
T Consensus 26 T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDi--DeRll~fI~~~a~~~gl~---i~~~~~D 100 (243)
T PF01861_consen 26 TPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDI--DERLLDFINRVAEEEGLP---IEAVHYD 100 (243)
T ss_dssp -HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S---HHHHHHHHHHHHHHT-----EEEE---
T ss_pred cHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEc--CHHHHHHHHHHHHHcCCc---eEEEEec
Confidence 33444444455555544678999999999888888888777889988888 565567788899999984 7777654
Q ss_pred cccccccccCCccccEEEccccccC
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFG 491 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~ 491 (694)
..+=-..++ .++.|++++.|=|+.
T Consensus 101 lR~~LP~~~-~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 101 LRDPLPEEL-RGKFDVFFTDPPYTP 124 (243)
T ss_dssp TTS---TTT-SS-BSEEEE---SSH
T ss_pred ccccCCHHH-hcCCCEEEeCCCCCH
Confidence 321111122 378999999975553
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.038 Score=60.53 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=81.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-CC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV-DI 145 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~-~l 145 (694)
+-+|||.=++||+-++..|+..+ +..+|+|-|.++..++..++|++.|+..+.++..++|..-+.... ..
T Consensus 110 ~l~vLealsAtGlrslRya~El~---------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~ 180 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELP---------GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMV 180 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhc---------chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccc
Confidence 46899999999999999998875 246899999999999999999999999988888888876654311 12
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+||+|=.+++|+. ..+++..-+-++.||++.-.
T Consensus 181 ~~~FDvIDLDPyGs~-------s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 181 AKFFDVIDLDPYGSP-------SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccccceEecCCCCCc-------cHHHHHHHHHhhcCCEEEEE
Confidence 368999988888853 23333333467899987643
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.08 Score=48.70 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
|.+....++||.++|+||| |.||.-++-.+ +..|+.++- .+.|-+++.+++..-.+ +|.+++....+++..
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDI--dpeALEIf~rNaeEfEv---qidlLqcdildle~~-- 111 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDI--DPEALEIFTRNAEEFEV---QIDLLQCDILDLELK-- 111 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeec--CHHHHHHHhhchHHhhh---hhheeeeeccchhcc--
Confidence 4445555789999999999 99997666675 999999887 67766665544444333 467888865555442
Q ss_pred CCccccEEEccc
Q 044245 476 QQKKVDLLIGEP 487 (694)
Q Consensus 476 ~~~~vDvivsE~ 487 (694)
..-+|..|-.|
T Consensus 112 -~g~fDtaviNp 122 (185)
T KOG3420|consen 112 -GGIFDTAVINP 122 (185)
T ss_pred -CCeEeeEEecC
Confidence 35677766663
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.13 Score=49.03 Aligned_cols=74 Identities=16% Similarity=0.058 Sum_probs=50.1
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-ccEEEc
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VDLLIG 485 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vDvivs 485 (694)
+|+|+-+| |-=+..-|+. .++|+|+|- .+.-.++++.+++--|.+ ++|+++.++..++... +...+ +|+|..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidi--d~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~-~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDI--DPERLECAKHNAEVYGVA-DNIDFICGDFFELLKR-LKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES---HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGG-B------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhh-ccccccccEEEE
Confidence 68998888 7777777787 489999999 666667889999999987 9999999988766432 21122 699986
Q ss_pred cc
Q 044245 486 EP 487 (694)
Q Consensus 486 E~ 487 (694)
-|
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 53
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.1 Score=54.55 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=52.5
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|+|+.||.|.+++-+.++|. ..|+++|.++.+++..++|.. +. ++.+|+.++... ++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-----------~~v~a~e~~~~a~~~~~~N~~-----~~--~~~~Di~~~~~~-~~~~~ 62 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-----------EIVAANEIDKSAAETYEANFP-----NK--LIEGDITKIDEK-DFIPD 62 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-----------EEEEEEeCCHHHHHHHHHhCC-----CC--CccCccccCchh-hcCCC
Confidence 689999999999999888876 578999999999888776542 11 566788777532 22357
Q ss_pred ccEEEEcc
Q 044245 149 ADILVSEI 156 (694)
Q Consensus 149 ~DlIvse~ 156 (694)
+|+++..+
T Consensus 63 ~D~l~~gp 70 (275)
T cd00315 63 IDLLTGGF 70 (275)
T ss_pred CCEEEeCC
Confidence 99998754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.14 Score=50.87 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecccccccccc
Q 044245 66 KSCHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~~~~~l~~~~ 143 (694)
++.+.||||.|.- +..+.-.+..+ .+.+|.|+++..++.|+.++.+| ++...|++....-.+--++.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-----------wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~g 146 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-----------WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNG 146 (292)
T ss_pred CceEEEeeccCcccccccccceeec-----------ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccc
Confidence 4578999999964 33333333322 58899999999999999999999 88888887655433322211
Q ss_pred --CCCCCccEEEEccccc
Q 044245 144 --DIDSRADILVSEILDS 159 (694)
Q Consensus 144 --~l~~~~DlIvse~~~~ 159 (694)
...++||..+||+..+
T Consensus 147 iig~nE~yd~tlCNPPFh 164 (292)
T COG3129 147 IIGKNERYDATLCNPPFH 164 (292)
T ss_pred cccccceeeeEecCCCcc
Confidence 1247999999997663
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.57 Score=48.24 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=68.5
Q ss_pred HHHHhhccC-C-CEEEEEcCC--CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 58 LAIDKMVTK-S-CHVLDIGAG--TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 58 ~ai~~~~~~-~-~~VLDiG~G--tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
++++.+... | ...|||||| |-...-..|++.. |..+|+-+|.+|-.+..++..+..+.- .+..+++
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~---------P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA---------PDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH----------TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC---------CCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence 344444444 5 569999999 3333455666655 468999999999999999988876643 2589999
Q ss_pred cccccccc--c-------cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 134 KRSDELEV--G-------VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 134 ~~~~~l~~--~-------~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
+|.++... . -++.+++=+++..++. ++-.+.....+...++..|.||..++-.-.+
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh-~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLH-FVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GG-GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeec-cCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 99987541 0 1233445566554433 3333345667778888899999988755444
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.47 Score=50.29 Aligned_cols=72 Identities=8% Similarity=-0.137 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHH-HHHhccCCcccccEEEeecccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYL-RTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~-~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
.+.+.|.+.+. ++..|||+||| |..+...++++. ..+|++++- |+.+-+.+ +++.+.. ..-+|+.+.++..
T Consensus 52 ~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDi--S~~mL~~a~~~l~~~~--p~~~v~~i~gD~~ 125 (301)
T TIGR03438 52 RHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDI--SADALKESAAALAADY--PQLEVHGICADFT 125 (301)
T ss_pred HHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEEC--CHHHHHHHHHHHHhhC--CCceEEEEEEccc
Confidence 44555655553 45689999999 877766666531 268999999 55433333 3333221 2135777887654
Q ss_pred c
Q 044245 469 C 469 (694)
Q Consensus 469 ~ 469 (694)
+
T Consensus 126 ~ 126 (301)
T TIGR03438 126 Q 126 (301)
T ss_pred c
Confidence 3
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.32 Score=51.87 Aligned_cols=92 Identities=33% Similarity=0.410 Sum_probs=59.6
Q ss_pred hccCCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc-ccccc
Q 044245 63 MVTKSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR-SDELE 140 (694)
Q Consensus 63 ~~~~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~-~~~l~ 140 (694)
.+.+|+.|+-+|+| .|.+++.+|++-. .+|+++|.+++-++.|++. |-. .++... .....
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-----------a~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~ 224 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-----------AEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALE 224 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-----------CeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhH
Confidence 46789999999998 3466777777543 5999999999999988864 322 233333 22221
Q ss_pred cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+.+|+|+.-. + ...+.... +.|+++|+++
T Consensus 225 ---~~~~~~d~ii~tv--------~-~~~~~~~l-~~l~~~G~~v 256 (339)
T COG1064 225 ---AVKEIADAIIDTV--------G-PATLEPSL-KALRRGGTLV 256 (339)
T ss_pred ---HhHhhCcEEEECC--------C-hhhHHHHH-HHHhcCCEEE
Confidence 2234599998521 1 23333344 4889999886
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.12 Score=50.88 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEecCC-chH-HHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec
Q 044245 388 EWRLSMVMAMRNALQGRVQPLCVVADDS-VFL-TICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK 465 (694)
Q Consensus 388 ~r~~~y~~Ai~~~~~~~~~~~vldig~G-giL-sl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~ 465 (694)
+|+.-.+.-+.+....+. ..|+|+||| |.. -+++.|.. ...|+.++.| -+|..+.+++.. +.++.++
T Consensus 14 eRtRPa~dLla~Vp~~~~-~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS-~~Mla~Aa~rlp--------~~~f~~a 82 (257)
T COG4106 14 ERTRPARDLLARVPLERP-RRVVDLGCGPGNSTELLARRWP-DAVITGIDSS-PAMLAKAAQRLP--------DATFEEA 82 (257)
T ss_pred hccCcHHHHHhhCCcccc-ceeeecCCCCCHHHHHHHHhCC-CCeEeeccCC-HHHHHHHHHhCC--------CCceecc
Confidence 466666666666555443 479999999 754 67888886 6789999994 234333333222 3556666
Q ss_pred ccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
+..+.. +..+.|+|.+.-.+ -.|| ++..- +.| +=..|.|||.+
T Consensus 83 Dl~~w~----p~~~~dllfaNAvl----qWlp-dH~~l-l~r--L~~~L~Pgg~L 125 (257)
T COG4106 83 DLRTWK----PEQPTDLLFANAVL----QWLP-DHPEL-LPR--LVSQLAPGGVL 125 (257)
T ss_pred cHhhcC----CCCccchhhhhhhh----hhcc-ccHHH-HHH--HHHhhCCCceE
Confidence 544443 24678999987321 2355 33210 111 11258999854
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.16 Score=50.80 Aligned_cols=52 Identities=21% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
...+.|+..-.+|..|||--||||..+.+|.+.|. +.+++|+++..++.|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R------------~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR------------RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-------------EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcCC------------eEEEEeCCHHHHHHhcC
Confidence 34455555556799999999999999999988874 89999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.3 Score=47.62 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC------CCCcEEEEecccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG------MGRNIKVINKRSD 137 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng------l~~~I~vi~~~~~ 137 (694)
+..-..|||||-|.|.+.++-..+ +..+.|.|+--...++.+.++.+.+ .-.+|.++..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP----------dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam 127 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP----------DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM 127 (249)
T ss_pred ccceEEeeccCccchhhhccccCc----------cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence 456789999999999999988875 6789999998888999998887654 1136666665543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.63 Score=48.43 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhh---ccC------CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 48 NDSYRNRAYRLAIDKM---VTK------SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 48 ~D~~r~~~y~~ai~~~---~~~------~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
.-.+|...|...|... ..+ ...||-=|||.|.|+.-+|..|. ++-|-|.|--|+-+..-
T Consensus 123 ~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~------------~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 123 GQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF------------KCQGNEFSYFMLICSSF 190 (369)
T ss_pred cchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc------------cccccHHHHHHHHHHHH
Confidence 4467777887777653 222 46799999999999999999986 55556887777765544
Q ss_pred HH
Q 044245 119 VL 120 (694)
Q Consensus 119 ~~ 120 (694)
.+
T Consensus 191 iL 192 (369)
T KOG2798|consen 191 IL 192 (369)
T ss_pred HH
Confidence 44
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.2 Score=49.97 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=61.6
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.++++.+||-+|+++|.---..+..-. +.+-|||+|.+...=...-..++ .-+ ||.-|-.|++...-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVG---------peG~VYAVEfs~rsGRdL~nmAk--kRt-NiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVG---------PEGCVYAVEFSHRSGRDLINMAK--KRT-NIIPIIEDARHPAKY 220 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccC---------CCceEEEEEecccchHHHHHHhh--ccC-CceeeeccCCCchhe
Confidence 367899999999999976544444433 46789999998754332221221 122 455555566542211
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.-+-.-+|+|+++.-. .+....+.-..+.+|++||-++-
T Consensus 221 RmlVgmVDvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 221 RMLVGMVDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred eeeeeeEEEEeccCCC-----chhhhhhhhhhhhhhccCCeEEE
Confidence 1112347888875322 22223333334579999998764
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.055 Score=58.14 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=58.9
Q ss_pred HHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEeccccc
Q 044245 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDE 138 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~ 138 (694)
+.....+|..|-|+-||-|.+++.|++.+ ++|+|-|.|+++++..+.+++.|.+... |++++.+..+
T Consensus 243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~------------crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 243 LSGLFKPGEVVCDVFAGVGPFALPAAKKG------------CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred HhhccCCcchhhhhhcCcCccccchhhcC------------cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 33456779999999999999999999987 5999999999999999999999988766 8888877665
Q ss_pred c
Q 044245 139 L 139 (694)
Q Consensus 139 l 139 (694)
.
T Consensus 311 F 311 (495)
T KOG2078|consen 311 F 311 (495)
T ss_pred H
Confidence 4
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.24 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.035 Sum_probs=45.4
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV 122 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ 122 (694)
.+.|...-.+|+.|||--+|||.-+++|.+.|. +.+|+|++++-++.|++++..
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR------------~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGR------------KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC------------CEEEEeCCHHHHHHHHHHHHh
Confidence 344444446799999999999999999988874 899999999999999998753
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.28 Score=49.73 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+...+.|...-.+|..|||--||||..++.+.+.|. +.+|+|+++.-.+.|.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r------------~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR------------RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC------------CEEEEecCHHHHHHHHHHHHHH
Confidence 344555555556799999999999999999888874 8999999999999999888653
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.16 Score=53.09 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=34.2
Q ss_pred CCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHH
Q 044245 405 VQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRT 448 (694)
Q Consensus 405 ~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~ 448 (694)
+|..||++|+| |++.+++||+=||++|+.+|. ++.-.++|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHH
Confidence 67899999999 999999999866999999999 5543344443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.92 Score=47.04 Aligned_cols=117 Identities=12% Similarity=-0.027 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-c--hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-V--FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-g--iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.++||.+....-+...||||-+| | +|-........+..|.-.|= ++...+..++.++++||+ +.+++.+++.-+
T Consensus 123 i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDy--s~~Nv~~g~~li~~~gL~-~i~~f~~~dAfd 199 (311)
T PF12147_consen 123 IRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDY--SPINVEKGRALIAERGLE-DIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeC--CHHHHHHHHHHHHHcCCc-cceEEEecCCCC
Confidence 34444444332234578999999 5 66555544322456666666 677667789999999998 888999987543
Q ss_pred ccc-cccCCccccEEEccccccCCccccCcchhhHHHHHh---hcccccCCCceEE
Q 044245 470 LTM-DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERS---KLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~-~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~---~~~~~L~p~g~i~ 521 (694)
-.. ..+ ..+++++|.-+.|.+ ++ ++= ..+. -+...+.|||.+|
T Consensus 200 ~~~l~~l-~p~P~l~iVsGL~El----F~-Dn~---lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 200 RDSLAAL-DPAPTLAIVSGLYEL----FP-DND---LVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred HhHhhcc-CCCCCEEEEecchhh----CC-cHH---HHHHHHHHHHHHhCCCcEEE
Confidence 221 122 235677777654442 22 221 1111 1223588988765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.55 Score=46.77 Aligned_cols=86 Identities=5% Similarity=-0.088 Sum_probs=43.0
Q ss_pred HHhcCCCCCcEEEecCC-chHHH-HHHHcCCCceEEEcCCCcChhHHHHHH-------HHhccCCcccccEEEeeccccc
Q 044245 399 NALQGRVQPLCVVADDS-VFLTI-CVARLSKTAHVLSLLPGLGDKGAQYLR-------TVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl-~aA~~g~a~~V~ave~~~~~~~~~~~~-------~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
+.....++.+.+|||+| |=+-+ .|++.| +++++.||- .+....+++ +.++..|....+|++++++.-+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi--~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEI--LPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE---SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEe--chHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 33444467799999999 85444 455665 999999998 554444433 3344455544688888875432
Q ss_pred ccccccCCccccEEEccc
Q 044245 470 LTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~ 487 (694)
-...+..-..+|+|..--
T Consensus 113 ~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp HHHHHHHGHC-SEEEE--
T ss_pred cHhHhhhhcCCCEEEEec
Confidence 211111124578888753
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.72 Score=48.02 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=62.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++...+|.--|.|..|..+.+.++ +.++++|+|.++.+++.|++....++ +++++++++..++...
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~---------~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLP---------DLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL 89 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCC---------CCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence 55679999999999999999988875 24689999999999999999888765 6999999987776421
Q ss_pred -cCCCCCccEEEEc
Q 044245 143 -VDIDSRADILVSE 155 (694)
Q Consensus 143 -~~l~~~~DlIvse 155 (694)
..-.+++|-|+.+
T Consensus 90 ~~~~i~~vDGiL~D 103 (314)
T COG0275 90 KELGIGKVDGILLD 103 (314)
T ss_pred HhcCCCceeEEEEe
Confidence 0012466766654
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.36 Score=47.91 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=79.2
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
|.+.+. .+..+.|||+= +.|+..+.+-+-++.++|.|-...+. +.|.+.+++|++. ++|+|-.++- +. .+
T Consensus 10 va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl--~~a~~~v~~~~l~-~~i~vr~~dg--l~--~l 80 (226)
T COG2384 10 VANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL--ESAIRNVKKNNLS-ERIDVRLGDG--LA--VL 80 (226)
T ss_pred HHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH--HHHHHHHHhcCCc-ceEEEeccCC--cc--cc
Confidence 444443 34458999988 99999999987799999999854554 4567889999998 9999987753 22 22
Q ss_pred C-CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccCh
Q 044245 476 Q-QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCP 535 (694)
Q Consensus 476 ~-~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~ 535 (694)
. ..++|++|==+ |-. . .-++ .|..|...+|..-++-++|....
T Consensus 81 ~~~d~~d~ivIAG-------MGG-~-----lI~~----ILee~~~~l~~~~rlILQPn~~~ 124 (226)
T COG2384 81 ELEDEIDVIVIAG-------MGG-T-----LIRE----ILEEGKEKLKGVERLILQPNIHT 124 (226)
T ss_pred CccCCcCEEEEeC-------CcH-H-----HHHH----HHHHhhhhhcCcceEEECCCCCH
Confidence 2 23688877654 222 1 1112 36777778888888889998755
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.15 Score=50.45 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=54.5
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.++|||||=+...... +.+ --.|++||.++. .-.+.+.|.-+.+++..-.+
T Consensus 53 lrlLEVGals~~N~~s--~~~-----------~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e 103 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-----------WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESE 103 (219)
T ss_pred ceEEeecccCCCCccc--ccC-----------ceeeEEeecCCC----------------CCCceeeccccCCCCCCccc
Confidence 5899999886543222 222 246999998641 12245667777666544457
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCe
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ 183 (694)
+||+|++-++-.++-.....-.+.....++|+|+|.
T Consensus 104 ~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 104 KFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred ceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 999999866555543222223455555679999998
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.76 Score=46.94 Aligned_cols=90 Identities=11% Similarity=-0.049 Sum_probs=49.3
Q ss_pred CCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+...+||||+| | +..-| |.. -++|||-|. |..++.. .+.-|+ +|+... +... .+.+.|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l-~~~--f~~v~aTE~--S~~Mr~r----L~~kg~-----~vl~~~--~w~~---~~~~fDv 154 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERL-APL--FKEVYATEA--SPPMRWR----LSKKGF-----TVLDID--DWQQ---TDFKFDV 154 (265)
T ss_pred cCCceEEecCCCcHHHHHH-Hhh--cceEEeecC--CHHHHHH----HHhCCC-----eEEehh--hhhc---cCCceEE
Confidence 34679999999 5 55555 455 578999999 6665432 334444 444321 1221 1357899
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|.+= ++|+-..-..-..++.+ ..|+|+|+++
T Consensus 155 IscL-------NvLDRc~~P~~LL~~i~-~~l~p~G~li 185 (265)
T PF05219_consen 155 ISCL-------NVLDRCDRPLTLLRDIR-RALKPNGRLI 185 (265)
T ss_pred Eeeh-------hhhhccCCHHHHHHHHH-HHhCCCCEEE
Confidence 8662 23331111111233332 2589998765
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.23 Score=52.77 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+|..|||||++ |=.+..+++.| + +|+||+. .+++.. +... .+|+.+++..-.... ..+.+|+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG-~-~V~AVD~--g~l~~~----L~~~-----~~V~h~~~d~fr~~p---~~~~vDw 273 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG-M-FVTAVDN--GPMAQS----LMDT-----GQVEHLRADGFKFRP---PRKNVDW 273 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-C-EEEEEec--hhcCHh----hhCC-----CCEEEEeccCcccCC---CCCCCCE
Confidence 468899999999 77788888886 6 9999998 565432 2222 578888765332221 1578999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
+||..
T Consensus 274 vVcDm 278 (357)
T PRK11760 274 LVCDM 278 (357)
T ss_pred EEEec
Confidence 99975
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.19 Score=50.35 Aligned_cols=35 Identities=9% Similarity=-0.109 Sum_probs=27.7
Q ss_pred cEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHH
Q 044245 408 LCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYL 446 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~ 446 (694)
..+|+||| |.-+..+|.. -++|+|++. ++.+-++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k~VIatD~--s~~mL~~a 71 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YKEVIATDV--SEAMLKVA 71 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hhhheeecC--CHHHHHHh
Confidence 78999999 9777888887 799999999 55443443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.34 Score=52.55 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=41.5
Q ss_pred hhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCC
Q 044245 378 PERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLP 436 (694)
Q Consensus 378 r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~ 436 (694)
.....+|.|.-=+..+-.|...... ++..|+++|+| |||+..+||..||++|++++.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~--~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVR--PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCC--CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4456777777766533324444443 34489999999 999999999767999999988
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.16 Score=53.23 Aligned_cols=83 Identities=20% Similarity=0.150 Sum_probs=63.0
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHH-------HHHHHHHHcCCCC-cEEEEe
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVK-------LMKKVLHVNGMGR-NIKVIN 133 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~-------~A~~~~~~ngl~~-~I~vi~ 133 (694)
..+.+|+.|+|=-.|||.+.+.+|+-|+ .|+|.|++-.|+. ..+.|.++.|.+. -+.++.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa------------~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA------------YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc------------eeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 3477899999999999999999999987 9999999988876 2455666667432 355677
Q ss_pred ccccccccccCCCCCccEEEEcccc
Q 044245 134 KRSDELEVGVDIDSRADILVSEILD 158 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~ 158 (694)
+|...-..-. ...||.|||++.+
T Consensus 272 ~D~sn~~~rs--n~~fDaIvcDPPY 294 (421)
T KOG2671|consen 272 ADFSNPPLRS--NLKFDAIVCDPPY 294 (421)
T ss_pred ecccCcchhh--cceeeEEEeCCCc
Confidence 7776644322 3589999999765
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.55 Score=43.28 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-ch-HHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VF-LTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-gi-Lsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
....|.++....+++.|+|||+| |. ++...++.| ..|+|++- ++.+.+. ++.++ +.++.++ +
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi--~~~aV~~----a~~~~-----~~~v~dD---l 67 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDI--NEKAVEK----AKKLG-----LNAFVDD---L 67 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEEC--CHHHHHH----HHHhC-----CeEEECc---C
Confidence 34456666655456789999999 86 888888886 69999999 6654433 33333 3455553 3
Q ss_pred cccccC-CccccEEEc
Q 044245 471 TMDDTQ-QKKVDLLIG 485 (694)
Q Consensus 471 ~~~~l~-~~~vDvivs 485 (694)
...++. =+.+|+|-|
T Consensus 68 f~p~~~~y~~a~liys 83 (134)
T PRK04148 68 FNPNLEIYKNAKLIYS 83 (134)
T ss_pred CCCCHHHHhcCCEEEE
Confidence 222221 255788876
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.88 Score=51.64 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc--c
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--V 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--~ 143 (694)
+..+|+|--||||.+-..+++...... ....++|.|+++....+|+.+.-.+|+...+.+.+++...-+.. .
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQ------DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhc------cceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccccc
Confidence 457899999999988777776653110 02579999999999999999999998864455555554332211 1
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
+..++||.|++++..+
T Consensus 260 ~~~~~~D~viaNPPf~ 275 (489)
T COG0286 260 DDKGKFDFVIANPPFS 275 (489)
T ss_pred CCccceeEEEeCCCCC
Confidence 2346899999998765
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.38 Score=50.74 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=54.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
..++...+|.--|.|..|..+.++.+ .++|+|+|.++.+++.|++++.. ..+++.+++++..++...
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~----------~~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLP----------NGRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-T----------T-EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCC----------CCeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHH
Confidence 45678999999999999999998765 37999999999999999876653 357999999998776511
Q ss_pred -cC-CCCCccEEEEc
Q 044245 143 -VD-IDSRADILVSE 155 (694)
Q Consensus 143 -~~-l~~~~DlIvse 155 (694)
.. ...++|.|+.+
T Consensus 86 ~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 86 KELNGINKVDGILFD 100 (310)
T ss_dssp HHTTTTS-EEEEEEE
T ss_pred HHccCCCccCEEEEc
Confidence 11 12467777765
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.97 Score=45.49 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=30.1
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCC
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLP 436 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~ 436 (694)
..|+++.||||||- |+|++..|+.-|++.|..++-
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDI 90 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDI 90 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeec
Confidence 45778899999998 999999999756999998876
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.9 Score=44.19 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
|..-..-.+|.+|+.-|+| |=||.+.||+- -..|||..|-+ ...+.+ +.+=.+..|+. |+++|++.++-.-....
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH-~~Ra~k-a~eeFr~hgi~-~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH-ETRAEK-ALEEFREHGIG-DNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec-HHHHHH-HHHHHHHhCCC-cceEEEEeecccCCccc
Confidence 5555566789999999999 89999999972 24699999884 223333 34446778898 99999998765443321
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHH
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWK 505 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~ 505 (694)
...++|.|.-.. --||..+.+++
T Consensus 174 -ks~~aDaVFLDl-------PaPw~AiPha~ 196 (314)
T KOG2915|consen 174 -KSLKADAVFLDL-------PAPWEAIPHAA 196 (314)
T ss_pred -cccccceEEEcC-------CChhhhhhhhH
Confidence 135788886653 46888876433
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.4 Score=50.23 Aligned_cols=45 Identities=40% Similarity=0.536 Sum_probs=40.9
Q ss_pred ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 64 VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
++.|.+||-+|+|. |++++.+||+.+ +.+|+.+|.++.-++.||+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G----------A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG----------ASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC----------CCcEEEeecCHHHHHHHHH
Confidence 67799999999995 999999999976 4799999999999999987
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.87 Score=47.96 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=54.3
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC--Ccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ--QKK 479 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~--~~~ 479 (694)
.++.+++|.++| |--|...++..+ ..+||+++. .+.|.+.+++.++. . ++|+++++...++... +. ...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~--D~~al~~ak~~L~~---~-~ri~~i~~~f~~l~~~-l~~~~~~ 90 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDR--DPDAIAAAKDRLKP---F-GRFTLVHGNFSNLKEV-LAEGLGK 90 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcC--CHHHHHHHHHhhcc---C-CcEEEEeCCHHHHHHH-HHcCCCc
Confidence 356799999999 666666666532 468999999 77776777665544 3 7999999988776421 21 127
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
+|.|+...
T Consensus 91 vDgIl~DL 98 (296)
T PRK00050 91 VDGILLDL 98 (296)
T ss_pred cCEEEECC
Confidence 99998863
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.83 E-value=2 Score=47.61 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=75.4
Q ss_pred HhhccCCC-EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc
Q 044245 61 DKMVTKSC-HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 61 ~~~~~~~~-~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
.+.+.+.. ++|-+|||.--++....+.|- ..|+.+|.|+..++.+...-.. . ..-+.+...++..+
T Consensus 42 ~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~-----------~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l 108 (482)
T KOG2352|consen 42 MKYLSPSDFKILQLGCGNSELSEHLYKNGF-----------EDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQL 108 (482)
T ss_pred HHhhchhhceeEeecCCCCHHHHHHHhcCC-----------CCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhc
Confidence 34455555 999999999999999888875 6899999999887776543321 1 23578888888888
Q ss_pred ccccCCCCCccEEEEcccccccc-CCCh------HHHHHHHHHhccCCCCeEE
Q 044245 140 EVGVDIDSRADILVSEILDSELL-GEGL------IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~-~e~~------l~~l~~~~~~~L~p~G~ii 185 (694)
.+++ +.||+++-..-...++ +|.. ....+....++|++||+.+
T Consensus 109 ~fed---ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 109 VFED---ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cCCC---cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 7654 7899998755333333 2222 2234445567899999864
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.59 Score=47.75 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
|+.|+-+|-- -+.|++++-.+- ..+|..+|+++..+...++.++..|+. +|+.+.-|.+.- ++.++.
T Consensus 153 gK~I~vvGDD-DLtsia~aLt~m----------pk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~p-lpe~~~ 219 (354)
T COG1568 153 GKEIFVVGDD-DLTSIALALTGM----------PKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNP-LPEDLK 219 (354)
T ss_pred CCeEEEEcCc-hhhHHHHHhcCC----------CceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhccc-ChHHHH
Confidence 6789999944 477777776664 368999999999999999999999985 688888787763 345666
Q ss_pred CCccEEEEcccc
Q 044245 147 SRADILVSEILD 158 (694)
Q Consensus 147 ~~~DlIvse~~~ 158 (694)
++||+++++|..
T Consensus 220 ~kFDvfiTDPpe 231 (354)
T COG1568 220 RKFDVFITDPPE 231 (354)
T ss_pred hhCCeeecCchh
Confidence 899999998654
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.1 Score=53.67 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=65.7
Q ss_pred CcEEEecCC-chHHH-HHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 407 PLCVVADDS-VFLTI-CVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 407 ~~vldig~G-giLsl-~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
-+|+|+=+| |...| |..+|| |+.|+|+|= .+.+.+.+++.++.|+.. ++..++++....... ...+|-|
T Consensus 196 eviVDLYAGIGYFTlpflV~ag-Ak~V~A~Ew--Np~svEaLrR~~~~N~V~-~r~~i~~gd~R~~~~----~~~AdrV- 266 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAG-AKTVFACEW--NPWSVEALRRNAEANNVM-DRCRITEGDNRNPKP----RLRADRV- 266 (351)
T ss_pred chhhhhhcccceEEeehhhccC-ccEEEEEec--CHHHHHHHHHHHHhcchH-HHHHhhhccccccCc----cccchhe-
Confidence 467888889 88888 888996 999999999 898888999999999998 888888886443322 1234443
Q ss_pred ccccccCCccccCcchhhHHHHHhhcccccCCCc
Q 044245 485 GEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518 (694)
Q Consensus 485 sE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g 518 (694)
++ |||| +.=.=|..--+ .|+|.|
T Consensus 267 ----nL---GLlP-Sse~~W~~A~k---~Lk~eg 289 (351)
T KOG1227|consen 267 ----NL---GLLP-SSEQGWPTAIK---ALKPEG 289 (351)
T ss_pred ----ee---cccc-ccccchHHHHH---HhhhcC
Confidence 23 6788 65444443333 367644
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.077 Score=46.66 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=25.9
Q ss_pred CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 428 TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 428 a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
..++++++.. +. .+-.+++++..+++ ++++++++.+.+.-. .++.+++|+|.-..
T Consensus 23 ~~~~~~vD~~--~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~-~~~~~~~dli~iDg 77 (106)
T PF13578_consen 23 RGKLYSVDPF--PG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLP-SLPDGPIDLIFIDG 77 (106)
T ss_dssp ----EEEESS---------------GGG--BTEEEEES-THHHHH-HHHH--EEEEEEES
T ss_pred cCCEEEEECC--Cc-ccccchhhhhcCCC-CeEEEEEcCcHHHHH-HcCCCCEEEEEECC
Confidence 3589999993 32 11235566767887 899999998876522 33346788887664
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.2 Score=44.05 Aligned_cols=111 Identities=11% Similarity=0.071 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc-ccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF-SIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l-~~~~i~vi~~~~~~~ 470 (694)
|-.|..+++.. +|.+||.||-| ||..-+.-++- ..+=+-+|+ .+-. .++ ++.+|. +.++|.++.|+=+++
T Consensus 90 iMha~A~ai~t-kggrvLnVGFGMgIidT~iQe~~-p~~H~IiE~--hp~V---~kr-mr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 90 IMHALAEAIST-KGGRVLNVGFGMGIIDTFIQEAP-PDEHWIIEA--HPDV---LKR-MRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHhh-CCceEEEeccchHHHHHHHhhcC-CcceEEEec--CHHH---HHH-HHhcccccccceEEEecchHhh
Confidence 33344444433 67799999999 99887776663 555567888 5532 222 455664 347888899876665
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
- +.|+.+-.|-|.=..|-.++|-+.. | .+..-++|||+|..
T Consensus 162 l-~~L~d~~FDGI~yDTy~e~yEdl~~-----~---hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 162 L-NTLPDKHFDGIYYDTYSELYEDLRH-----F---HQHVVRLLKPEGVF 202 (271)
T ss_pred h-ccccccCcceeEeechhhHHHHHHH-----H---HHHHhhhcCCCceE
Confidence 3 3565666888876654333222111 1 11223589999854
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.5 Score=47.26 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=54.3
Q ss_pred ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
..++.+||-.|+|. |.+++.+|++.. ..+|++++.++.-++.|++ .|.. . ++..+..++..-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G----------~~~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~~~~ 229 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG----------AAEIVCADVSPRSLSLARE----MGAD-K--LVNPQNDDLDHY 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEEeCCHHHHHHHHH----cCCc-E--EecCCcccHHHH
Confidence 44688999999863 566666666643 2479999999888777764 3432 1 222111111100
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
....+.+|+++- ..+. ...+..+. ++|+++|+++
T Consensus 230 ~~~~g~~D~vid-~~G~-------~~~~~~~~-~~l~~~G~iv 263 (343)
T PRK09880 230 KAEKGYFDVSFE-VSGH-------PSSINTCL-EVTRAKGVMV 263 (343)
T ss_pred hccCCCCCEEEE-CCCC-------HHHHHHHH-HHhhcCCEEE
Confidence 011135898874 2331 22333344 4789999886
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.39 Score=53.29 Aligned_cols=113 Identities=16% Similarity=0.070 Sum_probs=64.5
Q ss_pred HHHHHHHHhhccCC--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 54 RAYRLAIDKMVTKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 54 ~~y~~ai~~~~~~~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
..|.+.+...+..+ ..|+|+.+|.|.++..+... .|+....-+..-.-.-.++-..|+- -+
T Consensus 351 ~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~--------------~VWVMNVVP~~~~ntL~vIydRGLI---G~ 413 (506)
T PF03141_consen 351 SHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD--------------PVWVMNVVPVSGPNTLPVIYDRGLI---GV 413 (506)
T ss_pred HHHHHhhcccccccceeeeeeecccccHHHHHhccC--------------CceEEEecccCCCCcchhhhhcccc---hh
Confidence 34444444334444 57999999999987776543 2444333222111111233344552 22
Q ss_pred Eeccccc-cccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 132 INKRSDE-LEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 132 i~~~~~~-l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+ |+.+ ++ --|..||+|=++-+.+.....-.+..++-..+|.|+|+|.++-+
T Consensus 414 yh-DWCE~fs---TYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 414 YH-DWCEAFS---TYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred cc-chhhccC---CCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 22 4333 22 23578999987655544444334667777889999999998754
|
; GO: 0008168 methyltransferase activity |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.42 Score=50.85 Aligned_cols=68 Identities=24% Similarity=0.223 Sum_probs=52.1
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|+|+-||.|.+++-+.++|. ..|.|+|+++.+++.-+.|.. .+..+|+.++... ++++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-----------~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l~~~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-----------EVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DLPKD 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-----------EEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HHHHT
T ss_pred cEEEEccCccHHHHHHHhcCc-----------EEEEEeecCHHHHHhhhhccc--------ccccccccccccc-ccccc
Confidence 689999999999999999985 579999999998888776653 6778898887642 34435
Q ss_pred ccEEEEcc
Q 044245 149 ADILVSEI 156 (694)
Q Consensus 149 ~DlIvse~ 156 (694)
+|+++.-+
T Consensus 62 ~D~l~ggp 69 (335)
T PF00145_consen 62 VDLLIGGP 69 (335)
T ss_dssp -SEEEEE-
T ss_pred ceEEEecc
Confidence 99998754
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.3 Score=45.71 Aligned_cols=117 Identities=12% Similarity=-0.012 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+..|.+-.-. ...+.||.||.| |-..--..|+. .+|.-||- .+...+++++..-. .+++--|++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeI--D~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THVDFVQA--DEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEEC--CHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 466666544321 134789999999 88888888984 58988877 34333444441111 2454368888862
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACA 531 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~ 531 (694)
+. +...++.||||....|. . .| | +. ..+.|+|||+++=.....+..+
T Consensus 132 ---~~--~~~~~~fDVIIvDs~~~--------~--~f-y-~~-~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 132 ---LL--DLDIKKYDLIICLQEPD--------I--HK-I-DG-LKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred ---hh--hccCCcCCEEEEcCCCC--------h--HH-H-HH-HHHhcCCCcEEEECCCCcccCH
Confidence 21 11237899999984222 1 22 2 11 2346999999988877666543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.7 Score=42.36 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=75.8
Q ss_pred HHHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHH----HH--HH
Q 044245 43 YLDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPM----VK--LM 116 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~----~~--~A 116 (694)
-.+|..|..|.-. +-..---+.++.+|.|+--|.|.++..++.+-+ +.+.||+.=.++.. .. ..
T Consensus 26 aad~~rD~~Rhp~-E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vg---------p~G~Vy~~~p~e~~~~~~~~~~r~ 95 (238)
T COG4798 26 AADMARDKARHPG-EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVG---------PKGKVYAYVPAELTKFAKREGPRL 95 (238)
T ss_pred HHHhhhhhccCcc-ceeEEeccCCCCEEEEEecCCccHhhhhchhcC---------CceeEEEecchhhcccccchhhhh
Confidence 4566666665431 111112367899999999999999999998876 35788886543321 11 11
Q ss_pred HHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEcccccc----ccCCChHHHHHHHHHhccCCCCeEE
Q 044245 117 KKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE----LLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 117 ~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~----l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+...++.... |++++.+....+. .+++.|++.....+.. .++.+....+..+..+.|+|||+++
T Consensus 96 ~~~~~e~~~a-N~e~~~~~~~A~~----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~ 163 (238)
T COG4798 96 NAAAREPVYA-NVEVIGKPLVALG----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYL 163 (238)
T ss_pred hhhhhhhhhh-hhhhhCCcccccC----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEE
Confidence 1111222332 5666666655543 2356777765433322 2334456667777778999999875
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.70 E-value=2.2 Score=46.18 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCc---------------------------------------
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTA--------------------------------------- 429 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~--------------------------------------- 429 (694)
++....||.......++...+|-=|| |-+..-||..+ +.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 45667777777766677677887788 77777777664 21
Q ss_pred -eEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 430 -HVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 430 -~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
+.|.+|- .+.+.+.|+.++++-|+. |.|++.++++..+... .+..|+|||-|
T Consensus 255 ~~~~G~Di--d~r~i~~Ak~NA~~AGv~-d~I~f~~~d~~~l~~~---~~~~gvvI~NP 307 (381)
T COG0116 255 PIIYGSDI--DPRHIEGAKANARAAGVG-DLIEFKQADATDLKEP---LEEYGVVISNP 307 (381)
T ss_pred ceEEEecC--CHHHHHHHHHHHHhcCCC-ceEEEEEcchhhCCCC---CCcCCEEEeCC
Confidence 3668887 666678899999999998 9999999988877652 16789999995
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.1 Score=46.38 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCCC-CcEEEEecccccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++||-||-|.|......+++-. -..+.-||++...++..++.... .|++ .+|.++-||...+--
T Consensus 122 pkkvlVVgggDggvlrevikH~~----------ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~-- 189 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKS----------VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE-- 189 (337)
T ss_pred CCeEEEEecCCccceeeeecccc----------ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH--
Confidence 58999999999988777777621 35899999999999999988763 4554 478888887655431
Q ss_pred CC-CCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 DI-DSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 ~l-~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+. .++||+|+.+.-+-..-.+. ..........+.|++||.++-..-.+
T Consensus 190 ~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 190 DLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred HhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 22 46899999875332211111 12334445566899999887655433
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.24 Score=46.54 Aligned_cols=103 Identities=8% Similarity=0.046 Sum_probs=60.9
Q ss_pred CCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc-cccEEEeecccccccccccCCccc
Q 044245 404 RVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS-IDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 404 ~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~-~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
+.|+.|+.+|.| |+-++|.|...-.+.|.--+. .+.+.+-.++++..|..+ .+++.+++-....-.... .....
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdg--ne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDG--NEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-EQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecC--CHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH-hhCcc
Confidence 456778999999 888888887533455655566 566666678888888543 145555543222111111 13579
Q ss_pred cEEEcc--ccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 481 DLLIGE--PYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 481 DvivsE--~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
|+|++- .||..+ . + -..+.+.++|+|.|+
T Consensus 105 DiIlaADClFfdE~----h-~-----sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 105 DIILAADCLFFDEH----H-E-----SLVDTIKSLLRPSGR 135 (201)
T ss_pred cEEEeccchhHHHH----H-H-----HHHHHHHHHhCcccc
Confidence 999985 444311 0 0 222334557999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 694 | ||||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 1e-13 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 2e-13 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 5e-13 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 7e-13 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 3e-11 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 5e-08 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 5e-07 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 1e-06 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 4e-04 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 5e-04 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 6e-04 |
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 694 | |||
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 3e-60 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 2e-09 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-57 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-10 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-57 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 2e-09 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 2e-56 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 3e-08 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 5e-54 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-11 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 2e-52 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 3e-11 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 6e-39 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 4e-05 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 2e-04 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 5e-04 |
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 205 bits (522), Expect = 3e-60
Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 37/304 (12%)
Query: 43 YLDMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTK 100
+ ++L D R YR ++ ++ + K VLD+G+GTG+L M AA+A
Sbjct: 41 HEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARK--------- 91
Query: 101 GMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160
V E + K++ N + + +I + +E+E+ V+ + DI++SE +
Sbjct: 92 --VIGIEC-SSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE---KVDIIISEWMGYC 145
Query: 161 LLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHL 220
L E ++ T+ HA D+ L + L P R T Y +E + D +
Sbjct: 146 LFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI 205
Query: 221 VPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFW--KRPDSHGEAELQIKST 278
+ L D + + +L++ I E D + K D + ++
Sbjct: 206 KDVAIKEPL----------VDVVDPK-QLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVK 254
Query: 279 DDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEE 337
+ VHA+V+++ ++ R +ST+P HWKQ V+++ +++ GEE
Sbjct: 255 RNDYVHALVAYFNIEFTRCHKRTGFSTSPES-----PYTHWKQTVFYME-DYLTVKTGEE 308
Query: 338 LLFH 341
+
Sbjct: 309 IFGT 312
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-09
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 29/225 (12%)
Query: 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLR 502
+ Y + N V I+ K + + +KVD++I E G +
Sbjct: 101 SDYAVKIVKANKLD-HVVTII---KGKVEEVELPVEKVDIIISEWM-----GYCLFYESM 151
Query: 503 FWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRS-LSKIEGFDHAVVNTSLGA 561
D L+ + +I P + L AI + + + GFD +
Sbjct: 152 LNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMS-------- 203
Query: 562 CGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISPC---QGKVQVEFTEPGL 618
C A K+ Q ++N + E D ++
Sbjct: 204 CIKDVAIKEPLVDVVDPKQL-----VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDY 258
Query: 619 CHGFALWIDWVLD-SENSIVISTGPDKRY--WKQGVKLMAKPVAV 660
H + + ST P+ Y WKQ V M + V
Sbjct: 259 VHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTV 303
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-57
Identities = 69/338 (20%), Positives = 139/338 (41%), Gaps = 48/338 (14%)
Query: 43 YLDMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTK 100
+ +ML D+ R +YR AI +K + K VLD+G GTG+LSM AA+
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKH--------- 63
Query: 101 GMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160
V + ++++ K+++ +NG I ++ + +++ + + DI++SE +
Sbjct: 64 --VIGVDM-SSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFP---KVDIIISEWMGYF 117
Query: 161 LLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHL 220
LL E ++ T+ +A D LVE L P + + + +E + Y +
Sbjct: 118 LLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDV-------- 169
Query: 221 VPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDF--WKRPDSHGEAELQIKST 278
G D V + D + + + + K+ EFD K D ++ ++ +
Sbjct: 170 --YGFDYSPFVPLVLHEPIVDTVERN-NVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAK 226
Query: 279 DDGRVHAVVSWWVLQLDR---EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKG 335
++ +V+W+ + + + +ST P HWKQ +++ P + G
Sbjct: 227 RQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHA-----PYTHWKQTIFYFP-DDLDAETG 280
Query: 336 EELLF---------HALHTETSVSYELKSQIPITDERQ 364
+ + + +SY+ +S + R
Sbjct: 281 DTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRS 318
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 1e-10
Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 35/229 (15%)
Query: 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQN 500
+ + + + N FS D++ +L + L KVD++I E Y+ + M+
Sbjct: 73 IEMAKELVELNGFS-DKITLL---RGKLEDVHLPFPKVDIIISEWMGYFLLYESMMD--- 125
Query: 501 LRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRS-LSKIEGFDHAVVNTSL 559
D L + +I P K + + + + + + GFD++
Sbjct: 126 ----TVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYS------ 175
Query: 560 GACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISP---CQGKVQVEFTEP 616
+ + ++EFD + + ++
Sbjct: 176 --PFVPLVLHEPIVDTVERNNV-----NTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQ 228
Query: 617 GLCHGFALWIDWVLD---SENSIVISTGPDKRY--WKQGVKLMAKPVAV 660
+ +G W D V + + STGP Y WKQ + +
Sbjct: 229 DMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDA 277
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 1e-57
Identities = 58/355 (16%), Positives = 127/355 (35%), Gaps = 56/355 (15%)
Query: 12 DPLTGNSEWVVIEENEDVPESSQEPLLATTSY------LDMLNDSYRNRAYRLAI--DKM 63
G +++ D + +Y DML+D R AY A+ +K
Sbjct: 8 AGTGGGGPSAPVDKEVDYAQYFC-------TYSFLYHQKDMLSDRVRMDAYFNAVFQNKH 60
Query: 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123
+ VLD+G G+G+L++ +A+A V A E+ M + ++ N
Sbjct: 61 HFEGKTVLDVGTGSGILAIWSAQAGARK-----------VYAVEAT-KMADHARALVKAN 108
Query: 124 GMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPL 183
+ ++VI ++ + + + D+++SE + LL E + ++ A DR L +
Sbjct: 109 NLDHIVEVIEGSVED----ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV 164
Query: 184 TVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVP--------AGMDSILHVKSQQ 235
P + ++S + + ++ + + + ++
Sbjct: 165 MYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEK 224
Query: 236 YAMHCDAIT--KEIKLLSEPFKIFEFDFWK----RPDSHGEAELQIKSTDDGRVHAVVSW 289
Y + +++ P + E D + + + + R+ W
Sbjct: 225 YYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGW 284
Query: 290 WVLQLDR------EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEEL 338
+ +Q + I +TAP C HW Q V+ + +++ +G+ L
Sbjct: 285 FDVQFSGRKEDPAQQEIELTTAPSE----QHCTHWGQQVFIMS-NPINVEEGDNL 334
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-09
Identities = 40/243 (16%), Positives = 73/243 (30%), Gaps = 37/243 (15%)
Query: 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQN 500
A + R + N VE++ + D + +KVD++I E Y+ + M
Sbjct: 98 ADHARALVKANNLD-HIVEVI----EGSVEDISLPEKVDVIISEWMGYFLLRESMFD-SV 151
Query: 501 LRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSLG 560
+ D L ++ P + I R H +
Sbjct: 152 ISAR------DRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKS 205
Query: 561 ACGDL------PAPKDGPCLPFFTWQCGEIKK---LSNVFTVMEFDFSKPISPCQGKVQV 611
G P ++ T ++ + V E D +V+
Sbjct: 206 YYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRS 265
Query: 612 EFTEP-----GLCHGFALWIDWVLD------SENSIVISTGPDKRY---WKQGVKLMAKP 657
T GF W D ++ I ++T P +++ W Q V +M+ P
Sbjct: 266 NVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNP 325
Query: 658 VAV 660
+ V
Sbjct: 326 INV 328
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-56
Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 34/303 (11%)
Query: 43 YLDMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTK 100
+ +ML D R +YR I + + K VLD+G GTG+LSM AA+A
Sbjct: 39 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK--------- 89
Query: 101 GMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160
V + ++ ++ +N + I +I + +E+ + V+ + D+++SE +
Sbjct: 90 --VLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE---KVDVIISEWMGYF 143
Query: 161 LLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHL 220
LL E ++ ++ +A ++ L + P T V + DD++
Sbjct: 144 LLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFW------DDVY- 196
Query: 221 VPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFW--KRPDSHGEAELQIKST 278
G K+ + + + L+SEP I D D ++ +K T
Sbjct: 197 ---GFKMSCMKKAVIPEAVVEVLDPK-TLISEPCGIKHIDCHTTSISDLEFSSDFTLKIT 252
Query: 279 DDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEEL 338
A+ ++ + ++ ++ + HWKQ V+ + K S+ GE L
Sbjct: 253 RTSMCTAIAGYFDIYFEKN---CHNRVVFSTGPQSTKTHWKQTVFLLE-KPFSVKAGEAL 308
Query: 339 LFH 341
Sbjct: 309 KGK 311
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 3e-08
Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 34/228 (14%)
Query: 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQN 500
+ N D + ++ K + +KVD++I E Y+ + ML
Sbjct: 99 LYQAMDIIRLNKLE-DTITLI---KGKIEEVHLPVEKVDVIISEWMGYFLLFESMLD-SV 153
Query: 501 LRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSL-SKIEGFDHAVVNTSL 559
L + L+K + P + A+ + R + + GF + + ++
Sbjct: 154 LYAK------NKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAV 207
Query: 560 GACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISPC---QGKVQVEFTEP 616
+P P +S + D ++ T
Sbjct: 208 -----IPEAVVEVLDPK--------TLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRT 254
Query: 617 GLCHGFALW--IDWVLDSENSIVISTGPDKRY--WKQGVKLMAKPVAV 660
+C A + I + + N +V STGP WKQ V L+ KP +V
Sbjct: 255 SMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSV 302
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 5e-54
Identities = 61/306 (19%), Positives = 109/306 (35%), Gaps = 32/306 (10%)
Query: 42 SYLDMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNT 99
+M+ D R Y+ AI + K VLD+G G+G+LS AA+A
Sbjct: 24 QQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARK-------- 75
Query: 100 KGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDS 159
+ A E+ M + + ++ N + I VI + +E V + + DI++SE +
Sbjct: 76 ---IYAVEAS-TMAQHAEVLVKSNNLTDRIVVIPGKVEE----VSLPEQVDIIISEPMGY 127
Query: 160 ELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIH 219
L E ++ + HA + L + P + L+ N H
Sbjct: 128 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQ-PSFH 185
Query: 220 LVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGE---AELQIK 276
V + ++ +Y T +I++L + +F + + +
Sbjct: 186 GV--DLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFH 243
Query: 277 STDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKG 335
G VH + W+ + T++ STAP T HW Q + G
Sbjct: 244 MLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLT-----HWYQVRCLFQ-SPLFAKAG 297
Query: 336 EELLFH 341
+ L
Sbjct: 298 DTLSGT 303
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 28/228 (12%)
Query: 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK-KVDLLIGEP--YYFGNDGMLPWQ 499
AQ+ + N + DR+ ++ +++ +VD++I EP Y N+ ML
Sbjct: 85 AQHAEVLVKSNNLT-DRIVVIPG-----KVEEVSLPEQVDIIISEPMGYMLFNERMLE-S 137
Query: 500 NLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSL 559
L K L + P G + ++ + + K + +
Sbjct: 138 YLHAKK-------YLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT--KANFWYQPSFHGVD 188
Query: 560 GACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISPCQGKVQVEF----TE 615
+ A + P +I+ L +F + ++++ F
Sbjct: 189 LSALRGAAVDEYFRQPV--VDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLH 246
Query: 616 PGLCHGFALWIDWVLD-SENSIVISTGPDKRY--WKQGVKLMAKPVAV 660
GL HG A W D S ++ +ST P + W Q L P+
Sbjct: 247 SGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFA 294
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 2e-52
Identities = 62/306 (20%), Positives = 110/306 (35%), Gaps = 32/306 (10%)
Query: 42 SYLDMLNDSYRNRAYRLAI--DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNT 99
+M+ D R Y+ AI + K VLD+G G+G+LS AA+A
Sbjct: 132 QQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARK-------- 183
Query: 100 KGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDS 159
+ A E+ M + + ++ N + I VI + +E V + + DI++SE +
Sbjct: 184 ---IYAVEAS-TMAQHAEVLVKSNNLTDRIVVIPGKVEE----VSLPEQVDIIISEPMGY 235
Query: 160 ELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIH 219
L E ++ + HA + L + P + L+ N H
Sbjct: 236 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQ-PSFH 293
Query: 220 LVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHG---EAELQIK 276
V + ++ +Y T +I++L + +F + + E +
Sbjct: 294 GV--DLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFH 351
Query: 277 STDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKG 335
G VH + W+ + T++ STAP T HW Q + G
Sbjct: 352 MLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLT-----HWYQVRCLFQ-SPLFAKAG 405
Query: 336 EELLFH 341
+ L
Sbjct: 406 DTLSGT 411
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 3e-11
Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 28/228 (12%)
Query: 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK-KVDLLIGEP--YYFGNDGMLPWQ 499
AQ+ + N + DR+ ++ +++ +VD++I EP Y N+ ML
Sbjct: 193 AQHAEVLVKSNNLT-DRIVVIPG-----KVEEVSLPEQVDIIISEPMGYMLFNERMLE-S 245
Query: 500 NLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVNTSL 559
L K L + P G + ++ + + K + +
Sbjct: 246 YLHAKK-------YLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT--KANFWYQPSFHGVD 296
Query: 560 GACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISP----CQGKVQVEFTE 615
+ A + P +I+ L +F + + +
Sbjct: 297 LSALRGAAVDEYFRQPV--VDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLH 354
Query: 616 PGLCHGFALWIDWVLD-SENSIVISTGPDKRY--WKQGVKLMAKPVAV 660
GL HG A W D S ++ +ST P + W Q L P+
Sbjct: 355 SGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFA 402
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 153 bits (386), Expect = 6e-39
Identities = 67/408 (16%), Positives = 140/408 (34%), Gaps = 44/408 (10%)
Query: 5 RMFQLKLDPLTGNSEWVVIEENEDVPESSQEPL---LATTSYLDMLNDSYRNRAYRLAID 61
R + ++ ++ + E +DV ++ +PL L + Y D + Y A+
Sbjct: 338 RSRPDVGEGSNDSTHYLNVIEYKDVLQAPLQPLSENLDSGVYNTFEQDQIKYDVYGEAVV 397
Query: 62 KMV-------TKSCHVLDIGAGTGLLSMMAARA---MGSSDSTTSLNTKGMVTACESYLP 111
+ K+ + +G G G + ++ ++ + K + E P
Sbjct: 398 GALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEK-NP 456
Query: 112 MVKLMKKVLHVNGMGRNIKVINK--RSDELEVGVDIDSRADILVSEILDSELLGEGLIPT 169
+ K ++V R + +I RS + DI+VSE+L S E P
Sbjct: 457 NAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS-PE 515
Query: 170 LQHAHDRLLVENPLTVPCRVTTYGQLVESTFLW------------KLHDLYNNEAKALDD 217
L +++P + T+Y + + ST + + + LD+
Sbjct: 516 CLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDE 575
Query: 218 IHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGE--AELQI 275
+ HV++ ++ ++K I L +F F+ +S E ++
Sbjct: 576 DEMWIQKYPQG-HVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEF 634
Query: 276 KSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKG 335
+ + ++ LQL T+ S P + G W V + + + +G
Sbjct: 635 VMDRNADLMGFAGYFDLQLY--KTVMLSIEPSTHTPG--MVSWFPAVIPLR-DQLRVGEG 689
Query: 336 EELLFHA--LHTETSVSYELKSQIPITDERQ-----HNLNAKDFQLAL 376
+ + T V YE + T+ N N + + + +
Sbjct: 690 DRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESYYMRM 737
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 47.7 bits (112), Expect = 1e-05
Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 30/224 (13%)
Query: 458 DRVEILQKGKKCLTM--DDTQQKKVDLLIGEPY-YFGNDGMLPWQNLRFWKERSKLDPVL 514
RV I++ + L D ++ D+++ E FG++ + P L
Sbjct: 472 RRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTG-------FL 524
Query: 515 SKEVIIMPFKGILKACAIFCPDIWNSRRSLS------KIEGFDHAVVNTSLGACGDLPAP 568
I +P K I I + ++ S I P
Sbjct: 525 KPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYP 584
Query: 569 KDGPCLPFFTWQCGEIKK----LSNVFTVMEFDFSKPIS---PCQGKVQVEFTEPGLCHG 621
+ + K V F+ ++ ++ G
Sbjct: 585 QGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMG 644
Query: 622 FALWIDWVLDSENSIVISTGPDKRY-----WKQGVKLMAKPVAV 660
FA + D L ++++S P W V + + V
Sbjct: 645 FAGYFDLQLY--KTVMLSIEPSTHTPGMVSWFPAVIPLRDQLRV 686
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 80/512 (15%), Positives = 149/512 (29%), Gaps = 147/512 (28%)
Query: 225 MDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPD------SHGEAELQIKST 278
MD QY I + + + F + FD D S E + I S
Sbjct: 7 MD--FETGEHQY--QYKDI---LSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 279 DDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSIC-KGEE 337
D V R +F W + K EE
Sbjct: 59 DA----------VSGTLR---LF------------WT----------------LLSKQEE 77
Query: 338 LLFHALHTETSVSYE-LKSQIPITDERQHNLNAKDFQLALPPERIAIYGDGE-------W 389
++ + ++Y+ L S I T++RQ ++ + + +R +Y D +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYI----EQRDRLYNDNQVFAKYNVS 132
Query: 390 RLSMVMAMRNALQG-RVQPLCVV-----ADDSVFLTICVARLSKTAHVLSLLPGLGDKGA 443
RL + +R AL R ++ + + + + V K V +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK---VQCKMDF----KI 184
Query: 444 QYLRTVADPNCFSIDRV-EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLR 502
+L + NC S + V E+LQ K +D + D + + + R
Sbjct: 185 FWL-NLK--NCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHS---IQAELRR 236
Query: 503 FWKERSK------LDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSLSKIEGFDHAVVN 556
K + L V + + A + C + +R V +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAW--------NAFNLSCKILLTTR---------FKQVTD 279
Query: 557 TSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFS---KPISPCQGKVQVEF 613
L A D + + + L D +P + + E
Sbjct: 280 -FLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 614 TEPGLCHGFALWIDW--VLDSENSIVISTG-----PD---KRYWK-----QGVKLMAKPV 658
GL W +W V + + +I + P K + + + +
Sbjct: 337 IRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 659 AVGFEESGRTD-------LCSSTLVEASFDPS 683
++ + + ++D L +LVE S
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 60/460 (13%), Positives = 132/460 (28%), Gaps = 140/460 (30%)
Query: 4 QRMFQLKLDPLTGNSEWVVIEENEDVPESSQEPLLATTSYLDMLNDSYRNRAYR--LAID 61
Q+ + L N ++++ + ++P + T Y+ R+R Y
Sbjct: 80 QKFVEEVLRI---NYKFLM----SPIKTEQRQPSMMTRMYI-----EQRDRLYNDNQVFA 127
Query: 62 KM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGM---------VTACESYLP 111
K V++ L + LL + ++ G+ + C SY
Sbjct: 128 KYNVSRLQPYLKL--RQALLEL---------RPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 112 MVKLMKKVLHVNGMGRNIKVINKRSDELE--------VGVDIDSRADILVSEILDSELLG 163
K+ K+ +N + N LE + + SR+D + L +
Sbjct: 177 QCKMDFKIFWLN-LKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 164 EGLIPTLQHA-HDR-LL----VENP-----LTVPCR--VTT-------------YGQLVE 197
L L+ ++ LL V+N + C+ +TT +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 198 STFLWKLHDLYNNE--AKALD-DIHLVPAGMDSI--LHVKSQQYAMHCDAITKEIKLLSE 252
L K LD +P + + + +++E
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR----------------LSIIAE 335
Query: 253 PFKIF--EFDFWKRPDSHG-----EAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTA 305
+ +D WK + E+ L + + R ++ ++F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR----------KMFDRLSVF---- 381
Query: 306 PR--WISTGNWCDHWKQCVWFIPGKGMSICKGEELLF----------HALHTETSVSYEL 353
P I T W + ++ L+ +++ L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--------L 433
Query: 354 KSQIPITDERQ-HN--LNAKDFQLALPPERIAI-YGDGEW 389
+ ++ + +E H ++ + + + Y D +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 15/139 (10%)
Query: 44 LDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMV 103
+ + + +++ I V + V+D G G + A +G + G V
Sbjct: 1 MSLTIKNSLGQSHDY-IKMFVKEGDTVVDATCGNGNDTAFLASLVGEN---------GRV 50
Query: 104 TACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSEL-- 161
+ + K L + + +I ++ +D +A + L S
Sbjct: 51 FGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHS 110
Query: 162 ---LGEGLIPTLQHAHDRL 177
E I L A + L
Sbjct: 111 ISTRPETTIQALSKAMELL 129
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 18/122 (14%)
Query: 57 RL-AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKL 115
RL + V++ +LD+G+ L + A E +
Sbjct: 5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQIK----------SAIAGEVVEGPYQS 54
Query: 116 MKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHD 175
K + +G+ I+V ++ L + + ++ + + G + L+
Sbjct: 55 AVKNVEAHGLKEKIQVR--LANGLAA-FEETDQVSVITI----AGMGGRLIARILEEGLG 107
Query: 176 RL 177
+L
Sbjct: 108 KL 109
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM 125
+ ++D+ +G G++ ++ + TK + E + + K+ + N +
Sbjct: 49 RKGKIIDLCSGNGIIPLLLST-----------RTKAKIVGVEIQERLADMAKRSVAYNQL 97
Query: 126 GRNIKVIN 133
I++I
Sbjct: 98 EDQIEIIE 105
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 694 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.97 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.97 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.46 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.43 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.37 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.36 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.35 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.34 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.32 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.31 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.3 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.3 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.29 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.29 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.27 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.27 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.26 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.26 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.26 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.25 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.25 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.25 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.24 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.23 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.23 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.22 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.22 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.22 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.22 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.22 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.22 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.21 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.21 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.21 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.19 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.19 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.19 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.19 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.19 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.18 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.17 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.17 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.17 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.17 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.17 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.16 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.16 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.16 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.16 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.16 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.16 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.16 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.15 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.15 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.15 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.15 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.15 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.14 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.14 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.14 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.14 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.14 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.14 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.13 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.13 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.13 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.12 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.12 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.12 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.11 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.11 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.11 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.11 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.11 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.11 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.11 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.1 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.1 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.1 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.1 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.1 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.09 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.08 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.08 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.08 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.08 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.08 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.07 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.07 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.07 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.07 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.06 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.06 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.06 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.06 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.06 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.06 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.06 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.06 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.05 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.04 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.04 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.04 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.04 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.03 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.03 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.03 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.03 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.02 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.02 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.02 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.02 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.02 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.02 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.02 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.01 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.01 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.01 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.0 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.0 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.0 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.99 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.99 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.99 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.99 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.99 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.98 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.98 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.97 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.97 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.97 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.97 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.97 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.96 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.96 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.95 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.95 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.95 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.95 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.95 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.95 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.94 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.94 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.94 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.94 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.94 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.93 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.93 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.93 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.93 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.93 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.93 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.92 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.92 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.92 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.92 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.91 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.91 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.9 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.9 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.89 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.89 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.89 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.89 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.88 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.87 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.87 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.87 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.87 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.86 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.86 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.85 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.85 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.85 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.84 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.84 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.84 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.83 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.83 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.82 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.81 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.81 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.81 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.81 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.81 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.8 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.79 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.79 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.79 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.79 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.79 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.79 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.78 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.78 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.77 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.77 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.76 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.76 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.75 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.75 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.75 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.74 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.74 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.73 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.72 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.72 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.71 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.68 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.67 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.67 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.65 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.63 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.62 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.62 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.61 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.61 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.61 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.61 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.61 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.6 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.6 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.6 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.59 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.59 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.59 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.59 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.58 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.58 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.58 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.55 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.55 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.55 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.53 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.53 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.52 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.51 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.5 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.5 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.5 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.49 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.49 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.49 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.48 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.47 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.47 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.47 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.47 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.46 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.45 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.45 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.45 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.42 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.41 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.4 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.4 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.38 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.38 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.36 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.36 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.36 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.34 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.34 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.33 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.33 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.33 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.33 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.33 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.32 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.31 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.3 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.3 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.3 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.29 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.28 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.28 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.28 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.26 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.26 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.25 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.25 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.25 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.23 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.23 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.21 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.21 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.21 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.2 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.18 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.18 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.18 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.17 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.17 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.16 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.15 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.15 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.15 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.13 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.13 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.13 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.12 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.12 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.11 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.11 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.11 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.1 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.1 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.09 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.09 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.08 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.08 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.08 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.06 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.06 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.06 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.03 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.03 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.03 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.03 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.02 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.01 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.01 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.01 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.0 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.0 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.99 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.99 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.99 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.99 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.99 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.99 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.99 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.98 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.98 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 97.97 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.97 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.97 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.96 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.96 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.96 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.95 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.95 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.95 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.95 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.94 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.93 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.93 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.92 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.92 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.91 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.91 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.91 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.9 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.9 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.9 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.9 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.9 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.88 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.88 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.88 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.88 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 97.88 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.87 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.87 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.87 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.86 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.85 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.84 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.84 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 97.84 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 97.84 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.83 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.82 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.82 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.82 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.81 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.8 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.8 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.8 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.8 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.8 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.78 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.77 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.77 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.77 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.76 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.76 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.76 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.76 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.75 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.75 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.75 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.75 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.75 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.74 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.74 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.73 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 97.73 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.72 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.72 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.71 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.71 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.7 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.69 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 97.69 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.67 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.67 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.67 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.67 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.66 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.65 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 97.65 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.65 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 97.65 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 97.64 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.63 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 97.62 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.62 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.62 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.61 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.6 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.59 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 97.58 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 97.57 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.57 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.56 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 97.55 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 97.54 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.54 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.53 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.52 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.51 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.51 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.51 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.51 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 97.5 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.5 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 97.5 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.5 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.49 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 97.48 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.48 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.47 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.47 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.47 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.46 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 97.45 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.44 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 97.44 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.43 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.43 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.42 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 97.41 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.41 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 97.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.38 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.35 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.35 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.34 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.32 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.31 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-53 Score=452.95 Aligned_cols=265 Identities=18% Similarity=0.202 Sum_probs=220.6
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~ 459 (694)
..||||.+||++|++||.+|...++|++||||||| |||||||||+| |++|||||. ++++ ..|+++++.||++ ++
T Consensus 59 ~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~--s~~~-~~a~~~~~~n~~~-~~ 133 (376)
T 4hc4_A 59 EEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEA--SAIW-QQAREVVRFNGLE-DR 133 (376)
T ss_dssp HHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEEC--STTH-HHHHHHHHHTTCT-TT
T ss_pred HHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeC--hHHH-HHHHHHHHHcCCC-ce
Confidence 57999999999999999999988999999999999 99999999997 999999999 6765 5789999999998 99
Q ss_pred EEEeecccccccccccCCccccEEEccc--cccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhh
Q 044245 460 VEILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDI 537 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~~~~vDvivsE~--~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l 537 (694)
|++|++++++++. ++++|+||||| +++.+|+||+ +.+ ++|++ ||+|||+|+|+++++|++||+++.+
T Consensus 134 i~~i~~~~~~~~l----pe~~DvivsE~~~~~l~~e~~l~-~~l---~a~~r---~Lkp~G~~iP~~atly~apie~~~l 202 (376)
T 4hc4_A 134 VHVLPGPVETVEL----PEQVDAIVSEWMGYGLLHESMLS-SVL---HARTK---WLKEGGLLLPASAELFIVPISDQML 202 (376)
T ss_dssp EEEEESCTTTCCC----SSCEEEEECCCCBTTBTTTCSHH-HHH---HHHHH---HEEEEEEEESCEEEEEEEEECCHHH
T ss_pred EEEEeeeeeeecC----CccccEEEeecccccccccchhh-hHH---HHHHh---hCCCCceECCccceEEEEEeccchh
Confidence 9999999988864 58999999997 4667788988 555 66665 7999999999999999999999877
Q ss_pred hhhcCCCCcc---cccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C-----Cccee
Q 044245 538 WNSRRSLSKI---EGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S-----PCQGK 608 (694)
Q Consensus 538 ~~~~~~~~~v---~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~-----~~~~~ 608 (694)
+.....|.++ |||||++++...........+ |+... ..+.++||+|+.+++|||++.. + .+..+
T Consensus 203 ~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e------~~v~~-~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~ 275 (376)
T 4hc4_A 203 EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSE------IVVQG-LSGEDVLARPQRFAQLELSRAGLEQELEAGVGGR 275 (376)
T ss_dssp HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCE------EEEEC-CCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEE
T ss_pred hhhhcchhccccccCcCchhhhhhhhhhhcccCc------eEEEe-ecccccccCCEEEEEEECCCCCccccccccceeE
Confidence 5433446665 999999998864322100000 11111 1235789999999999999875 1 34566
Q ss_pred EEEEecCCeeeeEEEEEEEEEecCC---CcEEEecCCC--CCceeeeEEecCcceeccccCCCCC
Q 044245 609 VQVEFTEPGLCHGFALWIDWVLDSE---NSIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 609 ~~~~~~~~g~~~g~~~Wfd~~~~~~---~~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
++++++++|++|||++|||+.|+++ ..+.|||+|. .|||+|++|+|++|+.|++|+.+.|
T Consensus 276 f~~~~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g 340 (376)
T 4hc4_A 276 FRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSG 340 (376)
T ss_dssp EEEECCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred EEEEecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEeCCceEeCCCCEEEE
Confidence 7888999999999999999999754 3489999997 5799999999999999999998776
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=403.50 Aligned_cols=279 Identities=20% Similarity=0.327 Sum_probs=225.9
Q ss_pred ccchHHHhhCCHHHHHHHHHHHHh--hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHH
Q 044245 39 ATTSYLDMLNDSYRNRAYRLAIDK--MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLM 116 (694)
Q Consensus 39 ~~~~~~~ml~D~~r~~~y~~ai~~--~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A 116 (694)
.-..|..||+|..||++|++||.+ ...+|++|||||||||+|+++||++|+ .+|+|||.|+ |++.|
T Consensus 54 ~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA-----------~~V~ave~s~-~~~~a 121 (376)
T 4hc4_A 54 DVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGA-----------RRVYAVEASA-IWQQA 121 (376)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEEECST-THHHH
T ss_pred CcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCC-----------CEEEEEeChH-HHHHH
Confidence 335688999999999999999975 456899999999999999999999997 7999999985 89999
Q ss_pred HHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEe
Q 044245 117 KKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLV 196 (694)
Q Consensus 117 ~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~v 196 (694)
+++++.||+.++|++++++++++. +++++|+||||++++++++|++++.++++++++|+|||+++|+++++|++||
T Consensus 122 ~~~~~~n~~~~~i~~i~~~~~~~~----lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~api 197 (376)
T 4hc4_A 122 REVVRFNGLEDRVHVLPGPVETVE----LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPI 197 (376)
T ss_dssp HHHHHHTTCTTTEEEEESCTTTCC----CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEE
T ss_pred HHHHHHcCCCceEEEEeeeeeeec----CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEe
Confidence 999999999999999999999975 4579999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcccCcccccccCCeeeccCCccceeee-cccceeeeeccccccceecCCCeEEEEEEcCCCCCC-----Cce
Q 044245 197 ESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHV-KSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDS-----HGE 270 (694)
Q Consensus 197 e~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~-----~~~ 270 (694)
+++.+...-.... +.+..+||+++++ ...... ........++. ..+..+||+|+.+++|||.+.... ...
T Consensus 198 e~~~l~~~i~~w~-~v~~~yGfd~s~~--~~~~~~~~~~~~e~~v~~-~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~ 273 (376)
T 4hc4_A 198 SDQMLEWRLGFWS-QVKQHYGVDMSCL--EGFATRCLMGHSEIVVQG-LSGEDVLARPQRFAQLELSRAGLEQELEAGVG 273 (376)
T ss_dssp CCHHHHHHHHGGG-GHHHHHSCCCGGG--HHHHHHHHHSSCEEEEEC-CCGGGBCSCCEEEEEEETTCTTHHHHHHHCEE
T ss_pred ccchhhhhhcchh-ccccccCcCchhh--hhhhhhhhcccCceEEEe-ecccccccCCEEEEEEECCCCCccccccccce
Confidence 9987632111111 1122368998874 211000 00001111222 235688999999999999875422 345
Q ss_pred eeEEEEEccCCceeEEEEEEEEeecC---CCcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 271 AELQIKSTDDGRVHAVVSWWVLQLDR---EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 271 ~~~~~~~~~~G~~~g~~~Wf~~~l~~---~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
.++++++.++|++|||++||++.|++ +.+|.|||+|.. + .+||+|++|+|+ +|+.|++||+|.+++.
T Consensus 274 ~~f~~~~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~--~---~THW~Q~v~~L~-~Pi~V~~G~~I~g~i~ 343 (376)
T 4hc4_A 274 GRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFH--P---ATHWKQALLYLN-EPVQVEQDTDVSGEIT 343 (376)
T ss_dssp EEEEEECCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTS--C---CCTTCEEEEEEE-EEEEECTTCEEEEEEE
T ss_pred eEEEEEecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCc--C---CCceeeEEEEeC-CceEeCCCCEEEEEEE
Confidence 67888999999999999999999964 346899999962 3 359999999996 7999999999998875
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=409.47 Aligned_cols=300 Identities=19% Similarity=0.221 Sum_probs=245.3
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhcc----------CCCEEEEEcCCCCHHHHHHHHHcCCCCCCcc
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVT----------KSCHVLDIGAGTGLLSMMAARAMGSSDSTTS 96 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~----------~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~ 96 (694)
...|+||+.+.|.+.+|.-+.+|..|++.|++||.+++. ++.+|||||||+|+|+++++++++...
T Consensus 308 Lq~PLQPl~dnL~s~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~---- 383 (637)
T 4gqb_A 308 LQSPLQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD---- 383 (637)
T ss_dssp CBEECCTTTSCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTT----
T ss_pred ccCcCcchhhhhhhhhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcC----
Confidence 566999999999999999999999999999999988652 236899999999999888888875211
Q ss_pred CCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHh
Q 044245 97 LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDR 176 (694)
Q Consensus 97 ~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~ 176 (694)
.+.+|||||.|+ |+..|++.++.|+++++|++|+++++++. +|+|+|+||||+||+++++|+++ .++++++|
T Consensus 384 --~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~----LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr 455 (637)
T 4gqb_A 384 --RRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV----APEKADIIVSELLGSFADNELSP-ECLDGAQH 455 (637)
T ss_dssp --CEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC----CSSCEEEEECCCCBTTBGGGCHH-HHHHHHGG
T ss_pred --CCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc----CCcccCEEEEEcCcccccccCCH-HHHHHHHH
Confidence 124899999986 78899999999999999999999999985 56899999999999999999987 57889999
Q ss_pred ccCCCCeEEcCceEEEEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEE
Q 044245 177 LLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKI 256 (694)
Q Consensus 177 ~L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~ 256 (694)
+|+|||+++|+++++|++|++++.+|....-.. ....++... ++ .++.+. ..+...|++|+.+
T Consensus 456 ~LKPgGimiPs~atlyiapi~~~~l~~e~~~~~---~~~~~~~~~---~~---------~p~Vv~--~~~~~~Ls~p~~~ 518 (637)
T 4gqb_A 456 FLKDDGVSIPGEYTSFLAPISSSKLYNEVRACR---EKDRDPEAQ---FE---------MPYVVR--LHNFHQLSAPQPC 518 (637)
T ss_dssp GEEEEEEEESCEEEEEEEEEECHHHHHHHHTTC---CTTSCTTGG---GG---------SCEECB--CCSCEECSCCEEE
T ss_pred hcCCCcEEccccceEEEEEecCHHHHHHHHhcc---cccccchhh---cC---------CcEEEE--ecCccccCCCEEE
Confidence 999999999999999999999999986421110 011121111 11 111111 2357899999999
Q ss_pred EEEEcCCCC---CCCceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCCCCCccCccceeeeecCCCceeec
Q 044245 257 FEFDFWKRP---DSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSIC 333 (694)
Q Consensus 257 ~~fdf~~~~---~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~ 333 (694)
++||+.+.. ...+...++|++.++|++|||++||+++|+++ +.|||+|.. ....++||+|++|+|+ +|+.|+
T Consensus 519 ~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~~~--V~LST~P~~--~s~~~THW~Q~vfpL~-~Pl~V~ 593 (637)
T 4gqb_A 519 FTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLYQD--ITLSIRPET--HSPGMFSWFPILFPIK-QPITVR 593 (637)
T ss_dssp EEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEETT--EEEECSGGG--CCTTCCSCCCEEEEEE-EEEEEC
T ss_pred EEEECCCCCccccceEEEEEEEEecCCcEEEEEEEEEEEEeeCC--eEEECCCCC--CCCCCCcccCeEEEeC-CCeEEC
Confidence 999997643 23456788999999999999999999999876 999999963 1234579999999995 799999
Q ss_pred CCCEEEEEEE--ecceEEEEEEeeecCCC
Q 044245 334 KGEELLFHAL--HTETSVSYELKSQIPIT 360 (694)
Q Consensus 334 ~Gd~l~~~~~--~d~~~~~~~~~~~~~~~ 360 (694)
+||+|.+++. +|+.++||+|..++|..
T Consensus 594 ~Gd~I~~~~~R~~d~~kVWYEW~v~~p~~ 622 (637)
T 4gqb_A 594 EGQTICVRFWRCSNSKKVWYEWAVTAPVC 622 (637)
T ss_dssp TTCEEEEEEEEEECSSEEEEEEEEEESSC
T ss_pred CCCEEEEEEEEEeCCCceeEEEEEeCCcC
Confidence 9999999874 89999999998887654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=389.66 Aligned_cols=319 Identities=15% Similarity=0.141 Sum_probs=240.6
Q ss_pred CCCCCCccccccccchHHHhhCCHHHHHHHHHHHHhhccC-------CCEEEEEcCCCCHHHHHHHHHcCCCC---CCcc
Q 044245 27 EDVPESSQEPLLATTSYLDMLNDSYRNRAYRLAIDKMVTK-------SCHVLDIGAGTGLLSMMAARAMGSSD---STTS 96 (694)
Q Consensus 27 ~~~p~~~~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~~~~-------~~~VLDiG~GtG~lsl~aa~~g~~~~---~~~~ 96 (694)
...|+||+.+.|.+.+|..|++|..|++.|++||.+++.. +++|||||||+|+|+++++++++.+. ...+
T Consensus 363 LQ~PLQPL~dNLes~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~ 442 (745)
T 3ua3_A 363 LQAPLQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQ 442 (745)
T ss_dssp EECCCCTTTSCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTS
T ss_pred ccCCCCcchhccchHHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccc
Confidence 5679999999999999999999999999999999886431 46899999999999877666542000 0000
Q ss_pred CCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc--cCCCCCccEEEEccccccccCCChHHHHHHHH
Q 044245 97 LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--VDIDSRADILVSEILDSELLGEGLIPTLQHAH 174 (694)
Q Consensus 97 ~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~ 174 (694)
...+.+|||||.|+.+...+++.. .||++++|++++++++++.++ .+.++++|+||||+||+++.+|.+.+ +++..
T Consensus 443 ~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe-~Ld~v 520 (745)
T 3ua3_A 443 ESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPE-CLDGV 520 (745)
T ss_dssp CCCEEEEEEEECCHHHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHH-HHHTT
T ss_pred cccccEEEEEeCChHHHHHHHHHH-hcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHH-HHHHH
Confidence 001359999999987776665554 499999999999999998752 12358999999999999999986544 56666
Q ss_pred HhccCCCCeEEcCceEEEEEEecchhhhhhcccCccccc-ccCCee-----eccCCccc-ee-------eecccceeeee
Q 044245 175 DRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAK-ALDDIH-----LVPAGMDS-IL-------HVKSQQYAMHC 240 (694)
Q Consensus 175 ~~~L~p~G~iiP~~~~~~~~~ve~~~l~~~~~~~~~~~~-~~~g~~-----~~~~~~~~-~~-------~~~~~~~~~~~ 240 (694)
+++|+|||+++|+++++|++|++++.+|.. +.+.+.+ ...||. +....-+. .. .......++ +
T Consensus 521 ~r~Lkp~Gi~iP~~~t~ylaPi~~~~l~~~--v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~Py-V 597 (745)
T 3ua3_A 521 TGFLKPTTISIPQKYTSYVKPIMSTHIHQT--IKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIY-V 597 (745)
T ss_dssp GGGSCTTCEEESCEEEEEEEEEECHHHHHH--HHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCE-E
T ss_pred HHhCCCCcEEECCccEEEEEEecCHHHHHH--HHhhcccccccccccccccccccccccccccccccccccccccccE-E
Confidence 899999999999999999999999999873 2222110 012221 10000000 00 000011121 1
Q ss_pred ccccccceecCC-CeEEEEEEcCCCC--CCCceeeEEEEEccCCceeEEEEEEEEeecCCCcEEecCCCCCCCCCCccCc
Q 044245 241 DAITKEIKLLSE-PFKIFEFDFWKRP--DSHGEAELQIKSTDDGRVHAVVSWWVLQLDREGTIFYSTAPRWISTGNWCDH 317 (694)
Q Consensus 241 ~~~~~~~~~Ls~-p~~~~~fdf~~~~--~~~~~~~~~~~~~~~G~~~g~~~Wf~~~l~~~~~i~lST~P~~~~~~~w~~h 317 (694)
.. ..+...|++ |+.+++||+.+.. +..+...++|++.++|.+|||++||++.|+++ |.|||+|.+.. +-++|
T Consensus 598 v~-l~~~~~Ls~~pq~vftFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk~--V~LST~P~t~s--~~mTh 672 (745)
T 3ua3_A 598 VY-LSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKT--VMLSIEPSTHT--PGMVS 672 (745)
T ss_dssp EC-CCSCEESSSSCEEEEEEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEETT--EEEECSSTTCC--TTCCS
T ss_pred Ee-eccceecCCCCceEEEEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecCC--cEEecCCCCCC--CCCcc
Confidence 11 235789999 9999999998754 45677889999999999999999999999975 99999998522 22569
Q ss_pred cceeeeecCCCceeecCCCEEEEEEEe--cceEEEEEEeee
Q 044245 318 WKQCVWFIPGKGMSICKGEELLFHALH--TETSVSYELKSQ 356 (694)
Q Consensus 318 W~Q~v~~l~~~pi~V~~Gd~l~~~~~~--d~~~~~~~~~~~ 356 (694)
|+|++|+|. +|+.|++||+|.+++.+ |+.++||+|..+
T Consensus 673 WfQtfFPL~-ePL~V~~GdeI~g~~~R~~d~~kVWYEW~v~ 712 (745)
T 3ua3_A 673 WFPAVIPLR-DQLRVGEGDRISLKIDRKVDNTGVWYEWHVE 712 (745)
T ss_dssp CCCEEEEEE-EEEEECTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred ceeEEEecC-CceEeCCCCEEEEEEEEEcCCCCEEEEEEEE
Confidence 999999994 79999999999999876 999999999887
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=382.68 Aligned_cols=253 Identities=13% Similarity=0.127 Sum_probs=206.2
Q ss_pred cChhHHhhc-CChhHHHHHHHHHHHHhc--------CCCCCcEEEecCC-chHHHHHHHcCCCc-----eEEEcCCCcCh
Q 044245 376 LPPERIAIY-GDGEWRLSMVMAMRNALQ--------GRVQPLCVVADDS-VFLTICVARLSKTA-----HVLSLLPGLGD 440 (694)
Q Consensus 376 ~~r~~i~ml-~D~~r~~~y~~Ai~~~~~--------~~~~~~vldig~G-giLsl~aA~~g~a~-----~V~ave~~~~~ 440 (694)
+.-.-.+.. +|.+|++.|++||.+++. .+++++|||||+| |+|+++|++|| |+ ||||||. ++
T Consensus 319 L~s~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~-a~~~~~vkVyAVEk--np 395 (637)
T 4gqb_A 319 LESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAA-KQADRRIKLYAVEK--NP 395 (637)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHH-HHTTCEEEEEEEES--CH
T ss_pred hhhhhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHH-HhcCCCcEEEEEEC--CH
Confidence 343334433 899999999999998753 2345789999999 99999999986 55 8999999 88
Q ss_pred hHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc--cccCCccccCcchhhHHHHHhhcccccCCCc
Q 044245 441 KGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518 (694)
Q Consensus 441 ~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~--~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g 518 (694)
+|. ++++++++||+. |+|+||+|++|+++. |+||||||||| ||+++|+|+ ++| ++|++ ||||||
T Consensus 396 ~A~-~a~~~v~~N~~~-dkVtVI~gd~eev~L----PEKVDIIVSEwMG~fLl~E~ml--evL---~Ardr---~LKPgG 461 (637)
T 4gqb_A 396 NAV-VTLENWQFEEWG-SQVTVVSSDMREWVA----PEKADIIVSELLGSFADNELSP--ECL---DGAQH---FLKDDG 461 (637)
T ss_dssp HHH-HHHHHHHHHTTG-GGEEEEESCTTTCCC----SSCEEEEECCCCBTTBGGGCHH--HHH---HHHGG---GEEEEE
T ss_pred HHH-HHHHHHHhccCC-CeEEEEeCcceeccC----CcccCEEEEEcCcccccccCCH--HHH---HHHHH---hcCCCc
Confidence 875 678999999998 999999999998875 59999999996 678889886 566 78776 799999
Q ss_pred eEEcceEEEEEEEccChhhhhhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEe
Q 044245 519 IIMPFKGILKACAIFCPDIWNSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFD 597 (694)
Q Consensus 519 ~i~P~~a~l~~~~v~~~~l~~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d 597 (694)
+|||+++++|++||+++.+|.+... +.+.+|+++. +... . -... .+...|++|+.+++||
T Consensus 462 imiPs~atlyiapi~~~~l~~e~~~~~~~~~~~~~~-~~~p--------~---------Vv~~-~~~~~Ls~p~~~~~fd 522 (637)
T 4gqb_A 462 VSIPGEYTSFLAPISSSKLYNEVRACREKDRDPEAQ-FEMP--------Y---------VVRL-HNFHQLSAPQPCFTFS 522 (637)
T ss_dssp EEESCEEEEEEEEEECHHHHHHHHTTCCTTSCTTGG-GGSC--------E---------ECBC-CSCEECSCCEEEEEEE
T ss_pred EEccccceEEEEEecCHHHHHHHHhcccccccchhh-cCCc--------E---------EEEe-cCccccCCCEEEEEEE
Confidence 9999999999999999999987643 6677777654 2211 0 0000 1246799999999999
Q ss_pred CCCCC----CCcceeEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCC-----CCceeeeEEecCcceeccccCCC
Q 044245 598 FSKPI----SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPD-----KRYWKQGVKLMAKPVAVGFEESG 666 (694)
Q Consensus 598 ~~~~~----~~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~-----~~hW~Q~v~~l~~p~~v~~g~~~ 666 (694)
+.+.. ......++++++++|++|||++|||+.|.++ +.+||+|. .+||+|++|+|++|+.|++|+.+
T Consensus 523 ~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~~~--V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I 598 (637)
T 4gqb_A 523 HPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLYQD--ITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTI 598 (637)
T ss_dssp SSCCSTTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEETT--EEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEE
T ss_pred CCCCCccccceEEEEEEEEecCCcEEEEEEEEEEEEeeCC--eEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEE
Confidence 97754 2345667889999999999999999999865 68999995 37999999999999999999955
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=332.39 Aligned_cols=261 Identities=17% Similarity=0.226 Sum_probs=211.2
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 380 RIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 380 ~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
+..|++|..|+.+|++||.++...+++++||||||| |++++++|++| +++|+++|. +++ .+.|++.++.||++ +
T Consensus 13 ~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~--s~~-~~~a~~~~~~~~~~-~ 87 (328)
T 1g6q_1 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDM--SSI-IEMAKELVELNGFS-D 87 (328)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEES--STH-HHHHHHHHHHTTCT-T
T ss_pred HHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEECh--HHH-HHHHHHHHHHcCCC-C
Confidence 457999999999999999988877788999999999 99999999996 899999999 555 45788999999998 8
Q ss_pred cEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChh
Q 044245 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPD 536 (694)
Q Consensus 459 ~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~ 536 (694)
+|++++++.+++.. +.+++|+||+|++ ++.++.+++ ..| .++ .++|+|||.++|+.+++|++++++..
T Consensus 88 ~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~-~~l---~~~---~~~LkpgG~li~~~~~~~~~~~~~~~ 157 (328)
T 1g6q_1 88 KITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMD-TVL---YAR---DHYLVEGGLIFPDKCSIHLAGLEDSQ 157 (328)
T ss_dssp TEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHH-HHH---HHH---HHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred CEEEEECchhhccC---CCCcccEEEEeCchhhcccHHHHH-HHH---HHH---HhhcCCCeEEEEeeceEEEEEecCch
Confidence 99999998877643 3478999999974 333344444 222 333 34799999999999999999999887
Q ss_pred hhhhcC-CCCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C--CcceeEEEE
Q 044245 537 IWNSRR-SLSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S--PCQGKVQVE 612 (694)
Q Consensus 537 l~~~~~-~~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~--~~~~~~~~~ 612 (694)
+...+. .|.+++|||++.+.+..... +. .... .+.++||+|+.++++||.+.. + .+...++++
T Consensus 158 ~~~~~~~~w~~~~gf~~~~~~~~~~~~---~~---v~~~-------~~~~~ls~~~~~~~~d~~~~~~~~~~~~~~~~~~ 224 (328)
T 1g6q_1 158 YKDEKLNYWQDVYGFDYSPFVPLVLHE---PI---VDTV-------ERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLT 224 (328)
T ss_dssp HHHHHHHHTTCBTTBCCTTHHHHHTTS---CE---EECC-------CGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred hhhhhhcccccccCcChHHHhhhhhcC---Ce---EEEe-------ccceeecCCEEEEEEECCCCChhHhceeeeEEEE
Confidence 765543 37899999999988765311 11 1111 124789999999999999975 3 345667888
Q ss_pred ecCCeeeeEEEEEEEEEecC---CCcEEEecCCC--CCceeeeEEecCcceeccccCCCCC
Q 044245 613 FTEPGLCHGFALWIDWVLDS---ENSIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 613 ~~~~g~~~g~~~Wfd~~~~~---~~~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
++++|++|||++|||+.|++ ++.+.+||+|. .+||+|++++|++|+.|++|+.+.|
T Consensus 225 ~~~~g~~~g~~~wfd~~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~ 285 (328)
T 1g6q_1 225 AKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEG 285 (328)
T ss_dssp BCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEE
T ss_pred EecCcEEEEEEEEEEEEcCCCCCCCceEEECCCCcCCCcceeEEEEeCCceecCCCCEEEE
Confidence 99999999999999999986 23588999997 5799999999999999999997665
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=348.77 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=203.3
Q ss_pred hhcCChhHHHHHHHHHHHHhcCC-----CCCcEEEecCC-chHHHHHHHcC-------------CCceEEEcCCCcChhH
Q 044245 382 AIYGDGEWRLSMVMAMRNALQGR-----VQPLCVVADDS-VFLTICVARLS-------------KTAHVLSLLPGLGDKG 442 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~~-----~~~~vldig~G-giLsl~aA~~g-------------~a~~V~ave~~~~~~~ 442 (694)
.|++|.+|+++|++||.+|+..+ ++++|||||+| |+|+++|++|+ .++||||||. +++|
T Consensus 381 ~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEk--np~A 458 (745)
T 3ua3_A 381 TFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEK--NPNA 458 (745)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEEC--CHHH
T ss_pred HHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeC--ChHH
Confidence 59999999999999999996543 24699999999 99998876663 1349999999 7777
Q ss_pred HHHHHHHhccCCcccccEEEeeccccccccc--ccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCc
Q 044245 443 AQYLRTVADPNCFSIDRVEILQKGKKCLTMD--DTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEV 518 (694)
Q Consensus 443 ~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~--~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g 518 (694)
...++... .||++ ++|+||++++++++.+ .-.++||||||||++ |+.+|- .+ +.| .. .++||||||
T Consensus 459 ~~~l~~~~-~Ng~~-d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL-~p-e~L---d~---v~r~Lkp~G 528 (745)
T 3ua3_A 459 IVTLKYMN-VRTWK-RRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNEL-SP-ECL---DG---VTGFLKPTT 528 (745)
T ss_dssp HHHHHHHH-HHTTT-TCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGS-HH-HHH---HT---TGGGSCTTC
T ss_pred HHHHHHHH-hcCCC-CeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhc-cH-HHH---HH---HHHhCCCCc
Confidence 65544444 59998 9999999999999762 112589999999974 443332 22 222 22 256899999
Q ss_pred eEEcceEEEEEEEccChhhhhhcCCCC-c--ccccccc-------------------cchhhhhhcCCCCCCCCCCCCCc
Q 044245 519 IIMPFKGILKACAIFCPDIWNSRRSLS-K--IEGFDHA-------------------VVNTSLGACGDLPAPKDGPCLPF 576 (694)
Q Consensus 519 ~i~P~~a~l~~~~v~~~~l~~~~~~~~-~--v~G~d~s-------------------~~~~~~~~~~~~~~~~~~~~~p~ 576 (694)
++||+++++|++||+++.+|.+..... + ++||+.. +++.. ..+.+- +..
T Consensus 529 i~iP~~~t~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~---a~e~Py---Vv~--- 599 (745)
T 3ua3_A 529 ISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRN---NMDQIY---VVY--- 599 (745)
T ss_dssp EEESCEEEEEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHH---HHSSCE---EEC---
T ss_pred EEECCccEEEEEEecCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc---cccccE---EEe---
Confidence 999999999999999999998643322 1 4455321 11111 111111 000
Q ss_pred cccccccccccCC-ceeEEEEeCCCCC---CCcceeEEEEecCCeeeeEEEEEEEEEecCCCcEEEecCCCC-----Cce
Q 044245 577 FTWQCGEIKKLSN-VFTVMEFDFSKPI---SPCQGKVQVEFTEPGLCHGFALWIDWVLDSENSIVISTGPDK-----RYW 647 (694)
Q Consensus 577 ~~~~~~~~~~ls~-~~~l~~~d~~~~~---~~~~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~~~~lst~P~~-----~hW 647 (694)
..++..|++ |+.+++||+.+.. ......++++++++|.+|||+.|||+.|.++ +.|||+|.. +||
T Consensus 600 ----l~~~~~Ls~~pq~vftFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk~--V~LST~P~t~s~~mThW 673 (745)
T 3ua3_A 600 ----LSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKT--VMLSIEPSTHTPGMVSW 673 (745)
T ss_dssp ----CCSCEESSSSCEEEEEEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEETT--EEEECSSTTCCTTCCSC
T ss_pred ----eccceecCCCCceEEEEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecCC--cEEecCCCCCCCCCccc
Confidence 013468999 9999999998865 3456678899999999999999999999854 789999973 599
Q ss_pred eeeEEecCcceeccccCCCCCC-------cceeEEEEEEEeCCCee
Q 044245 648 KQGVKLMAKPVAVGFEESGRTD-------LCSSTLVEASFDPSNGE 686 (694)
Q Consensus 648 ~Q~v~~l~~p~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~ 686 (694)
+|++|+|++|+.|++|+.+.|. .+-.-+|.+++...+|+
T Consensus 674 fQtfFPL~ePL~V~~GdeI~g~~~R~~d~~kVWYEW~v~~~~~~g~ 719 (745)
T 3ua3_A 674 FPAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGE 719 (745)
T ss_dssp CCEEEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEECTTSC
T ss_pred eeEEEecCCceEeCCCCEEEEEEEEEcCCCCEEEEEEEEeccCCCC
Confidence 9999999999999999977653 23344555554444554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=320.21 Aligned_cols=271 Identities=23% Similarity=0.370 Sum_probs=221.0
Q ss_pred chHHHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 41 TSYLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 41 ~~~~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
.++..|++|..|+..|.++|.+. +.++.+|||||||+|.+++.++++++ .+|+|+|.+ +|++.|++
T Consensus 11 ~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-----------~~v~~vD~s-~~~~~a~~ 78 (328)
T 1g6q_1 11 GIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA-----------KHVIGVDMS-SIIEMAKE 78 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC-----------SEEEEEESS-THHHHHHH
T ss_pred hHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCC-----------CEEEEEChH-HHHHHHHH
Confidence 56889999999999999999653 56789999999999999999999875 699999999 69999999
Q ss_pred HHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecc
Q 044245 119 VLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVES 198 (694)
Q Consensus 119 ~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~ 198 (694)
+++.|++.++|+++.+++.++..+ .++||+|+++++++++.++..++.++.++.++|+|||+++|+.+++|++++++
T Consensus 79 ~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 155 (328)
T 1g6q_1 79 LVELNGFSDKITLLRGKLEDVHLP---FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLED 155 (328)
T ss_dssp HHHHTTCTTTEEEEESCTTTSCCS---SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHcCCCCCEEEEECchhhccCC---CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecC
Confidence 999999998999999999987542 26899999999998888899999999988999999999999999999999998
Q ss_pred hhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCCC--CceeeEEEE
Q 044245 199 TFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDS--HGEAELQIK 276 (694)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~--~~~~~~~~~ 276 (694)
+.+.... + . ......||+++.. .... ...+. ++. ..+...||+|+.+++|||.+.... .....++++
T Consensus 156 ~~~~~~~-~-~-~w~~~~gf~~~~~--~~~~----~~~~~-v~~-~~~~~~ls~~~~~~~~d~~~~~~~~~~~~~~~~~~ 224 (328)
T 1g6q_1 156 SQYKDEK-L-N-YWQDVYGFDYSPF--VPLV----LHEPI-VDT-VERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLT 224 (328)
T ss_dssp HHHHHHH-H-H-HTTCBTTBCCTTH--HHHH----TTSCE-EEC-CCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred chhhhhh-h-c-ccccccCcChHHH--hhhh----hcCCe-EEE-eccceeecCCEEEEEEECCCCChhHhceeeeEEEE
Confidence 7653211 0 0 0113467877652 1110 11111 122 235689999999999999986433 456678899
Q ss_pred EccCCceeEEEEEEEEeecC---CCcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 277 STDDGRVHAVVSWWVLQLDR---EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 277 ~~~~G~~~g~~~Wf~~~l~~---~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
+.++|++|||++||+++|++ ++++.+||+|.. + .+||+|++|+|+ +|+.|++|++|.+++.
T Consensus 225 ~~~~g~~~g~~~wfd~~~~~~~~~~~v~lst~P~~--~---~thW~q~~~~l~-~p~~v~~g~~i~~~~~ 288 (328)
T 1g6q_1 225 AKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHA--P---YTHWKQTIFYFP-DDLDAETGDTIEGELV 288 (328)
T ss_dssp BCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTS--C---CCTTCEEEEEEE-EEEECCTTCEEEEEEE
T ss_pred EecCcEEEEEEEEEEEEcCCCCCCCceEEECCCCc--C---CCcceeEEEEeC-CceecCCCCEEEEEEE
Confidence 99999999999999999986 446999999973 2 359999999996 7999999999999975
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=329.04 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=230.9
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 380 RIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 380 ~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
...|++|..|+..|+++|.++...+++++||||||| |.+++++|++| +++|+++|. +++ .+.|++.++.||++ +
T Consensus 41 ~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~--s~~-l~~a~~~~~~~~~~-~ 115 (349)
T 3q7e_A 41 HEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIEC--SSI-SDYAVKIVKANKLD-H 115 (349)
T ss_dssp HHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEEC--STH-HHHHHHHHHHTTCT-T
T ss_pred HHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECc--HHH-HHHHHHHHHHcCCC-C
Confidence 357999999999999999988777788999999999 99999999996 899999999 564 46788999999998 8
Q ss_pred cEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChh
Q 044245 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPD 536 (694)
Q Consensus 459 ~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~ 536 (694)
+|+++.+..+++. ++.+++|+|+++++ ++.++.+++ ..+ .++ .++|||||.++|+.+++++++++...
T Consensus 116 ~v~~~~~d~~~~~---~~~~~fD~Iis~~~~~~l~~~~~~~-~~l---~~~---~r~LkpgG~li~~~~~~~~~~~~~~~ 185 (349)
T 3q7e_A 116 VVTIIKGKVEEVE---LPVEKVDIIISEWMGYCLFYESMLN-TVL---HAR---DKWLAPDGLIFPDRATLYVTAIEDRQ 185 (349)
T ss_dssp TEEEEESCTTTCC---CSSSCEEEEEECCCBBTBTBTCCHH-HHH---HHH---HHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred cEEEEECcHHHcc---CCCCceEEEEEccccccccCchhHH-HHH---HHH---HHhCCCCCEEccccceEEEeeecChh
Confidence 9999999888774 33588999999973 333344444 222 333 34799999999999999999999998
Q ss_pred hhhhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C--CcceeEEEE
Q 044245 537 IWNSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S--PCQGKVQVE 612 (694)
Q Consensus 537 l~~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~--~~~~~~~~~ 612 (694)
++..+.. |.+++||||+++++..... +. .... .+.+++++++.+.++|+.+.. . .+...++++
T Consensus 186 ~~~~~~~~w~~~~G~d~~~~~~~~~~~---p~---v~~~-------~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~ 252 (349)
T 3q7e_A 186 YKDYKIHWWENVYGFDMSCIKDVAIKE---PL---VDVV-------DPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQ 252 (349)
T ss_dssp HHHHHTGGGGCBTTBCCGGGHHHHHTS---CE---EECC-------CGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred hhhhhhcccccccCcchHHHhHhhhcC---cE---EEEE-------ChhhEecccEEEEEEEcccCchhhcceeeeEEEE
Confidence 8877655 7899999999998864211 11 1111 135789999999999999975 2 345678899
Q ss_pred ecCCeeeeEEEEEEEEEecCCC-cEEEecCCC--CCceeeeEEecCcceeccccCCCCCC----------cceeEEEEEE
Q 044245 613 FTEPGLCHGFALWIDWVLDSEN-SIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRTD----------LCSSTLVEAS 679 (694)
Q Consensus 613 ~~~~g~~~g~~~Wfd~~~~~~~-~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~~----------~~~~~~~~~~ 679 (694)
++++|.+|||++|||+.|.+.. .+.|||+|. .|||+|++|+|++|+.|++|+.+.|. +...+.+++.
T Consensus 253 ~~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~ 332 (349)
T 3q7e_A 253 VKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLD 332 (349)
T ss_dssp BCSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEE
T ss_pred EccCCEEEEEEEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEE
Confidence 9999999999999999998743 488999997 58999999999999999999999883 4456677777
Q ss_pred EeCCCeeEEEEeec
Q 044245 680 FDPSNGELNVQHTF 693 (694)
Q Consensus 680 ~~~~~~~~~~~~~~ 693 (694)
|++..+++.-+.+|
T Consensus 333 ~~~~~~~~~~~~~~ 346 (349)
T 3q7e_A 333 FKGQLCELSCSTDY 346 (349)
T ss_dssp EECSSCEEEEEEEE
T ss_pred eCCcccccccCceE
Confidence 77877777655444
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=329.21 Aligned_cols=267 Identities=17% Similarity=0.176 Sum_probs=212.2
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~ 459 (694)
..||+|..|++.|+++|.++...+++++||||||| |++++++|++| +++|+++|. ++++ +.+++.++.||+. ++
T Consensus 39 ~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~--s~~~-~~a~~~~~~~~~~-~~ 113 (376)
T 3r0q_C 39 KDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEA--TKMA-DHARALVKANNLD-HI 113 (376)
T ss_dssp HHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEES--STTH-HHHHHHHHHTTCT-TT
T ss_pred HHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEcc--HHHH-HHHHHHHHHcCCC-Ce
Confidence 46999999999999999999888889999999999 99999999996 899999999 5554 5778999999998 89
Q ss_pred EEEeecccccccccccCCccccEEEccc--cccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhh
Q 044245 460 VEILQKGKKCLTMDDTQQKKVDLLIGEP--YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDI 537 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~~~~vDvivsE~--~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l 537 (694)
|+++.++.+++.. ++++|+||+|+ |++.++.++. ..+ .++ .++|+|||.++|+.+++|++|++++.+
T Consensus 114 v~~~~~d~~~~~~----~~~~D~Iv~~~~~~~l~~e~~~~-~~l---~~~---~~~LkpgG~li~~~~~~~~~~~~~~~~ 182 (376)
T 3r0q_C 114 VEVIEGSVEDISL----PEKVDVIISEWMGYFLLRESMFD-SVI---SAR---DRWLKPTGVMYPSHARMWLAPIKSNIA 182 (376)
T ss_dssp EEEEESCGGGCCC----SSCEEEEEECCCBTTBTTTCTHH-HHH---HHH---HHHEEEEEEEESSEEEEEEEEECCTHH
T ss_pred EEEEECchhhcCc----CCcceEEEEcChhhcccchHHHH-HHH---HHH---HhhCCCCeEEEEecCeEEEEeecchHH
Confidence 9999998877653 37899999997 4444444444 222 333 347999999999999999999998754
Q ss_pred hhhcC-----------CC---CcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-
Q 044245 538 WNSRR-----------SL---SKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI- 602 (694)
Q Consensus 538 ~~~~~-----------~~---~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~- 602 (694)
...+. .| +++|||||+.+++......... ....|+|.... +.++|++|+.++++||++..
T Consensus 183 ~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~----~~~~p~~~~~~-~~~~lt~~~~~~~~d~~~~~~ 257 (376)
T 3r0q_C 183 DRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKY----YIQTAMWNDLN-PQQIIGTPTIVKEMDCLTASV 257 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHH----HTSBCEEECCC-GGGBCBCCEEEEEEETTTCCG
T ss_pred hhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhh----cccCceEEEEC-hHHccCCCeEEEEEEcCcCCH
Confidence 43221 23 6899999999998632110000 00124555322 34899999999999999975
Q ss_pred CC---cceeEEEEe-cCCeeeeEEEEEEEEEecCC------CcEEEecCCC---CCceeeeEEecCcceeccccCCCCC
Q 044245 603 SP---CQGKVQVEF-TEPGLCHGFALWIDWVLDSE------NSIVISTGPD---KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 603 ~~---~~~~~~~~~-~~~g~~~g~~~Wfd~~~~~~------~~~~lst~P~---~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
++ +...+++++ +++|+||||++|||+.|.++ ..+.|||+|. .+||||++|+|++|+.|++|+.+.|
T Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~ 336 (376)
T 3r0q_C 258 SEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNL 336 (376)
T ss_dssp GGTSEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred HHhcccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEE
Confidence 33 566788888 99999999999999999643 2488999997 5799999999999999999998766
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=317.60 Aligned_cols=260 Identities=18% Similarity=0.213 Sum_probs=209.1
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 380 RIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 380 ~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
...|++|..|+.+|+++|.++....++++||||||| |.+++++|++| +++|+++|. +++ .+.+++.++.||++ +
T Consensus 39 ~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~--s~~-~~~a~~~~~~~~~~-~ 113 (340)
T 2fyt_A 39 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQ--SEI-LYQAMDIIRLNKLE-D 113 (340)
T ss_dssp HHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEES--STH-HHHHHHHHHHTTCT-T
T ss_pred HHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEECh--HHH-HHHHHHHHHHcCCC-C
Confidence 357999999999999999999877889999999999 99999999996 899999999 564 46788899999997 8
Q ss_pred cEEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChh
Q 044245 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPD 536 (694)
Q Consensus 459 ~i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~ 536 (694)
+|+++.++.+++.. +.+++|+||++++ ++.++.+++ ..| .+. .++|||||+++|+.++++++++++.+
T Consensus 114 ~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~-~~l---~~~---~~~LkpgG~lip~~~~~~~~~~~~~~ 183 (340)
T 2fyt_A 114 TITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLD-SVL---YAK---NKYLAKGGSVYPDICTISLVAVSDVN 183 (340)
T ss_dssp TEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHH-HHH---HHH---HHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred cEEEEEeeHHHhcC---CCCcEEEEEEcCchhhccCHHHHH-HHH---HHH---HhhcCCCcEEEcccceEEEEEecchh
Confidence 99999998877643 3478999999973 343344444 222 333 34799999999999999999999888
Q ss_pred hhhhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C--CcceeEEEE
Q 044245 537 IWNSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S--PCQGKVQVE 612 (694)
Q Consensus 537 l~~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~--~~~~~~~~~ 612 (694)
++..+.. |.+++|||++.+..... ..+. .+.+ ++.+++++|+.++++||.+.. + .+...+.++
T Consensus 184 ~~~~~~~~w~~~~g~~~~~~~~~~~---~~~~---v~~~-------~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~ 250 (340)
T 2fyt_A 184 KHADRIAFWDDVYGFKMSCMKKAVI---PEAV---VEVL-------DPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLK 250 (340)
T ss_dssp HHHHHTGGGGCBTTBCCGGGHHHHT---TBCE---EECC-------CGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred HhhhhhcccccccCcChHHHHHhhh---cCcE---EEEe-------chhhcccCCEEEEEEECCCCcccccceEeeEEEE
Confidence 7665543 78999999998887531 1111 1111 124689999999999999875 2 345567889
Q ss_pred ecCCeeeeEEEEEEEEEec-C-CCcEEEecCCC--CCceeeeEEecCcceeccccCCCC
Q 044245 613 FTEPGLCHGFALWIDWVLD-S-ENSIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGR 667 (694)
Q Consensus 613 ~~~~g~~~g~~~Wfd~~~~-~-~~~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~ 667 (694)
++++|++|||++|||+.|+ . .+.+.+||+|. .+||+|++|+|++|+.|++|+.+.
T Consensus 251 ~~~~~~~~g~~~wfd~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~ 309 (340)
T 2fyt_A 251 ITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALK 309 (340)
T ss_dssp BCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEE
T ss_pred EccCcEEEEEEEEEEEEeecCCCCCEEEECCCCcCCCccccEEEEeCCceEcCCCCEEE
Confidence 9999999999999999994 2 34589999997 589999999999999999999543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=311.95 Aligned_cols=278 Identities=22% Similarity=0.272 Sum_probs=223.2
Q ss_pred ccccccchHHHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHH
Q 044245 35 EPLLATTSYLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPM 112 (694)
Q Consensus 35 ~~~l~~~~~~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~ 112 (694)
..+.....+..|++|..|+..|.++|.+. +.++.+|||||||+|.+++.++++|+ .+|+|+|.|+ |
T Consensus 31 ~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-----------~~v~gvD~s~-~ 98 (340)
T 2fyt_A 31 SSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-----------KKVLGVDQSE-I 98 (340)
T ss_dssp CGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEEESST-H
T ss_pred HhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC-----------CEEEEEChHH-H
Confidence 33334456789999999999999999875 56789999999999999999999875 6999999996 9
Q ss_pred HHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 113 VKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 113 ~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
++.|+++++.+++.++|+++.+++.++.++ .++||+|+++++++++.++..++.++.++.++|+|||+++|+.+++|
T Consensus 99 ~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 175 (340)
T 2fyt_A 99 LYQAMDIIRLNKLEDTITLIKGKIEEVHLP---VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTIS 175 (340)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCTTTSCCS---CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred HHHHHHHHHHcCCCCcEEEEEeeHHHhcCC---CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEE
Confidence 999999999999988999999999987543 26899999999888888888899999999999999999999999999
Q ss_pred EEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCCC--Cce
Q 044245 193 GQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDS--HGE 270 (694)
Q Consensus 193 ~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~--~~~ 270 (694)
+++++++.+..... . ......||+++.. ... . ...+. ++.+ .+...+++|+.++++||.+.... ...
T Consensus 176 ~~~~~~~~~~~~~~--~-~w~~~~g~~~~~~--~~~---~-~~~~~-v~~~-~~~~~ls~p~~~~~~d~~~~~~~~~~~~ 244 (340)
T 2fyt_A 176 LVAVSDVNKHADRI--A-FWDDVYGFKMSCM--KKA---V-IPEAV-VEVL-DPKTLISEPCGIKHIDCHTTSISDLEFS 244 (340)
T ss_dssp EEEECCHHHHHHHT--G-GGGCBTTBCCGGG--HHH---H-TTBCE-EECC-CGGGBCBCCEEEEEEETTTCCGGGGSEE
T ss_pred EEEecchhHhhhhh--c-ccccccCcChHHH--HHh---h-hcCcE-EEEe-chhhcccCCEEEEEEECCCCcccccceE
Confidence 99999876643211 0 0123567776652 111 0 11111 1111 24678999999999999875432 345
Q ss_pred eeEEEEEccCCceeEEEEEEEEeec--CCCcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEEe
Q 044245 271 AELQIKSTDDGRVHAVVSWWVLQLD--REGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHALH 344 (694)
Q Consensus 271 ~~~~~~~~~~G~~~g~~~Wf~~~l~--~~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~~ 344 (694)
..+.+++.++|++|||++||++.|+ .+++|.+||+|.. + .+||+|++|+|+ +|+.|++|++|.+++..
T Consensus 245 ~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~v~lst~P~~--~---~thW~q~~~~l~-~p~~v~~g~~i~~~~~~ 314 (340)
T 2fyt_A 245 SDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQS--T---KTHWKQTVFLLE-KPFSVKAGEALKGKVTV 314 (340)
T ss_dssp EEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTS--C---CCTTCEEEEEEE-EEEEECTTCEEEEEEEE
T ss_pred eeEEEEEccCcEEEEEEEEEEEEeecCCCCCEEEECCCCc--C---CCccccEEEEeC-CceEcCCCCEEEEEEEE
Confidence 6788999999999999999999994 3456999999973 2 459999999996 79999999999999753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=320.43 Aligned_cols=284 Identities=21% Similarity=0.297 Sum_probs=225.5
Q ss_pred cccccccchHHHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH
Q 044245 34 QEPLLATTSYLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP 111 (694)
Q Consensus 34 ~~~~l~~~~~~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~ 111 (694)
|..+-....+..|++|..|+..|.++|.+. +.++.+|||||||+|.+++.++++|+ .+|+|+|.| .
T Consensus 29 f~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-----------~~V~gvD~s-~ 96 (376)
T 3r0q_C 29 FCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-----------RKVYAVEAT-K 96 (376)
T ss_dssp TTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-----------SEEEEEESS-T
T ss_pred HHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-----------CEEEEEccH-H
Confidence 333333344668999999999999999764 46789999999999999999999975 699999999 9
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 112 MVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 112 ~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
|++.|+++++.|++.++|++++++++++.. +++||+|+++++++++.++..++.++..+.++|+|||+++|..+++
T Consensus 97 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~ 172 (376)
T 3r0q_C 97 MADHARALVKANNLDHIVEVIEGSVEDISL----PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARM 172 (376)
T ss_dssp THHHHHHHHHHTTCTTTEEEEESCGGGCCC----SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEEECchhhcCc----CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeE
Confidence 999999999999999899999999998764 3789999999999999889999999999989999999999999999
Q ss_pred EEEEecchhhhhhc-----------ccCcccccccCCeeeccCCccceeeec----ccceeeeeccccccceecCCCeEE
Q 044245 192 YGQLVESTFLWKLH-----------DLYNNEAKALDDIHLVPAGMDSILHVK----SQQYAMHCDAITKEIKLLSEPFKI 256 (694)
Q Consensus 192 ~~~~ve~~~l~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Ls~p~~~ 256 (694)
|.++++.+.+.... +... +.+..+|+++++. .+.+.-. ....+.+. ...+.+.|++|+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~W~~fw~-~~~~~~G~d~~~~--~~~~~~~~~~~~~~~p~~~--~~~~~~~lt~~~~~ 247 (376)
T 3r0q_C 173 WLAPIKSNIADRKRNDFDGAMADWHNFSD-EIKSYYGVDMGVL--TKPFAEEQEKYYIQTAMWN--DLNPQQIIGTPTIV 247 (376)
T ss_dssp EEEEECCTHHHHHHHHHHHHHHHHHHHHH-HHHHSTTCCCGGG--HHHHHHHHHHHHTSBCEEE--CCCGGGBCBCCEEE
T ss_pred EEEeecchHHhhhhhhhhhhhhhhhhhhh-ccCccccCChHHH--HhhhhhhhhhhcccCceEE--EEChHHccCCCeEE
Confidence 99999987443211 1110 0134689998874 2221000 00122211 12467899999999
Q ss_pred EEEEcCCCCCCC---ceeeEEEEE-ccCCceeEEEEEEEEeecCC------CcEEecCCCCCCCCCCccCccceeeeecC
Q 044245 257 FEFDFWKRPDSH---GEAELQIKS-TDDGRVHAVVSWWVLQLDRE------GTIFYSTAPRWISTGNWCDHWKQCVWFIP 326 (694)
Q Consensus 257 ~~fdf~~~~~~~---~~~~~~~~~-~~~G~~~g~~~Wf~~~l~~~------~~i~lST~P~~~~~~~w~~hW~Q~v~~l~ 326 (694)
++|||.+....+ ....+++++ .++|++|||++||+++|+++ ..|.|||+|.+ .+ .+||+|++|+|+
T Consensus 248 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~-~~---~thW~q~~~~l~ 323 (376)
T 3r0q_C 248 KEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSE-QH---CTHWGQQVFIMS 323 (376)
T ss_dssp EEEETTTCCGGGTSEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCS-SC---CCTTCEEEEEEE
T ss_pred EEEEcCcCCHHHhcccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCc-CC---CCceeeEEEEEC
Confidence 999999864332 466788888 99999999999999999642 25899999973 12 359999999996
Q ss_pred CCceeecCCCEEEEEEE
Q 044245 327 GKGMSICKGEELLFHAL 343 (694)
Q Consensus 327 ~~pi~V~~Gd~l~~~~~ 343 (694)
+|+.|++|++|.+++.
T Consensus 324 -~p~~v~~g~~i~~~~~ 339 (376)
T 3r0q_C 324 -NPINVEEGDNLNLGLL 339 (376)
T ss_dssp -EEEEECTTCEEEEEEE
T ss_pred -CceecCCCCEEEEEEE
Confidence 7999999999999875
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=313.74 Aligned_cols=279 Identities=23% Similarity=0.331 Sum_probs=226.0
Q ss_pred cccccccchHHHhhCCHHHHHHHHHHHHh--hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH
Q 044245 34 QEPLLATTSYLDMLNDSYRNRAYRLAIDK--MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP 111 (694)
Q Consensus 34 ~~~~l~~~~~~~ml~D~~r~~~y~~ai~~--~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~ 111 (694)
+..+-....+..|++|..|+..|.++|.+ .+.++.+|||||||+|.+++.++++++ .+|+|+|.| +
T Consensus 32 f~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~-----------~~v~gvD~s-~ 99 (349)
T 3q7e_A 32 FDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGA-----------RKVIGIECS-S 99 (349)
T ss_dssp -----CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTC-----------SEEEEEECS-T
T ss_pred HHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCC-----------CEEEEECcH-H
Confidence 33333345578899999999999999986 366789999999999999999999865 699999999 5
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 112 MVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 112 ~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
|++.|+++++.+++.++|+++.++++++.++ .++||+|+++++++++.++..++.++.++.++|+|||+++|..++.
T Consensus 100 ~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~ 176 (349)
T 3q7e_A 100 ISDYAVKIVKANKLDHVVTIIKGKVEEVELP---VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 176 (349)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEE
T ss_pred HHHHHHHHHHHcCCCCcEEEEECcHHHccCC---CCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceE
Confidence 9999999999999998999999999988643 2789999999999988889999999999999999999999999999
Q ss_pred EEEEecchhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCC--CCc
Q 044245 192 YGQLVESTFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPD--SHG 269 (694)
Q Consensus 192 ~~~~ve~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~--~~~ 269 (694)
|..+++.+.++.... . ......||++++. .+. . ...+. ++. ..+...+++|+.+++||+.+... ...
T Consensus 177 ~~~~~~~~~~~~~~~--~-~w~~~~G~d~~~~--~~~---~-~~~p~-v~~-~~~~~~~~~~~~~~~~dl~~~~~~~l~~ 245 (349)
T 3q7e_A 177 YVTAIEDRQYKDYKI--H-WWENVYGFDMSCI--KDV---A-IKEPL-VDV-VDPKQLVTNACLIKEVDIYTVKVEDLTF 245 (349)
T ss_dssp EEEEECCHHHHHHHT--G-GGGCBTTBCCGGG--HHH---H-HTSCE-EEC-CCGGGEEEEEEEEEEEETTTCCGGGGSE
T ss_pred EEeeecChhhhhhhh--c-ccccccCcchHHH--hHh---h-hcCcE-EEE-EChhhEecccEEEEEEEcccCchhhcce
Confidence 999999987654211 1 1234678998763 211 0 11121 122 23578999999999999997543 345
Q ss_pred eeeEEEEEccCCceeEEEEEEEEeecC-CCcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEEe
Q 044245 270 EAELQIKSTDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHALH 344 (694)
Q Consensus 270 ~~~~~~~~~~~G~~~g~~~Wf~~~l~~-~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~~ 344 (694)
...+++++.++|.+|||++||++.|++ +.+|.|||+|.. + .+||+|++|+|+ +|+.|++|++|.+++..
T Consensus 246 ~~~~~~~~~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P~~--~---~thW~q~~~~l~-~p~~v~~g~~i~~~~~~ 315 (349)
T 3q7e_A 246 TSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES--P---YTHWKQTVFYME-DYLTVKTGEEIFGTIGM 315 (349)
T ss_dssp EEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECSTTS--C---CCTTCEEEEEEE-EEEEECTTCEEEEEEEE
T ss_pred eeeEEEEEccCCEEEEEEEEEEEEecCCCCccEEECCCCc--C---CCcceeEEEEEC-CceEeCCCCEEEEEEEE
Confidence 677899999999999999999999986 335899999973 3 349999999995 79999999999999763
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=290.25 Aligned_cols=287 Identities=21% Similarity=0.266 Sum_probs=217.1
Q ss_pred hHHHhhCCHHHHHHHHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 42 SYLDMLNDSYRNRAYRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 42 ~~~~ml~D~~r~~~y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
.+..|++|..|+..|.++|.+.+ .++.+|||||||+|.+++.++++++ .+|+|+|.|+ |++.|+++
T Consensus 24 ~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~-----------~~V~~vD~s~-~~~~a~~~ 91 (348)
T 2y1w_A 24 QQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA-----------RKIYAVEAST-MAQHAEVL 91 (348)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEEECST-HHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC-----------CEEEEECCHH-HHHHHHHH
Confidence 45689999999999999998754 4789999999999999999999865 6999999995 99999999
Q ss_pred HHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 120 LHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 120 ~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
++.+|+.++|+++.++++++.. +++||+|++++++.++..+...+.+..+ +++|+|||+++|..++++.++++.+
T Consensus 92 ~~~~~l~~~v~~~~~d~~~~~~----~~~~D~Ivs~~~~~~~~~~~~~~~l~~~-~~~LkpgG~li~~~~~~~~~~i~~~ 166 (348)
T 2y1w_A 92 VKSNNLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHA-KKYLKPSGNMFPTIGDVHLAPFTDE 166 (348)
T ss_dssp HHHTTCTTTEEEEESCTTTCCC----SSCEEEEEECCCBTTBTTTSHHHHHHHG-GGGEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHcCCCCcEEEEEcchhhCCC----CCceeEEEEeCchhcCChHHHHHHHHHH-HhhcCCCeEEEEecCcEEEEEecch
Confidence 9999998899999999988753 3689999999888877777777777654 5799999999999999999999988
Q ss_pred hhhhhc--ccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCCCC---ceeeEE
Q 044245 200 FLWKLH--DLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSH---GEAELQ 274 (694)
Q Consensus 200 ~l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~~---~~~~~~ 274 (694)
.++... ....-......|++++.. ..+..-.....+. ++. ...+....+.....+||.+..... ....++
T Consensus 167 ~~~~~~~~~~~~w~~~~~~g~d~~~l--~~~~~~~~f~~p~-~d~--~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~ 241 (348)
T 2y1w_A 167 QLYMEQFTKANFWYQPSFHGVDLSAL--RGAAVDEYFRQPV-VDT--FDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFK 241 (348)
T ss_dssp HHHHHHHHHHGGGCCSCBTTBCCGGG--HHHHHHHHHTSCE-EEC--CCGGGBCBCCEEEEEETTTCCGGGGSEEEEEEE
T ss_pred HHhhhhccccCcccccccCcccHHHh--hhHHHhhhccCCe-EEe--ECCeeecCcceEEEEECCcCChHHhceeeeeEE
Confidence 765310 000000123567776652 1110000001111 111 123344455556778998765432 346788
Q ss_pred EEEccCCceeEEEEEEEEeecCC-CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE-----ecceE
Q 044245 275 IKSTDDGRVHAVVSWWVLQLDRE-GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL-----HTETS 348 (694)
Q Consensus 275 ~~~~~~G~~~g~~~Wf~~~l~~~-~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~-----~d~~~ 348 (694)
+++.++|+||||++||+++|++. ..+.+||+|.. + .+||+|++|+|+ +|+.|++||+|.+++. ++...
T Consensus 242 ~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~--~---~thW~q~~~~l~-~p~~v~~g~~i~~~~~~~~~~~~~~~ 315 (348)
T 2y1w_A 242 FHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTE--P---LTHWYQVRCLFQ-SPLFAKAGDTLSGTCLLIANKRQSYD 315 (348)
T ss_dssp EEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTS--C---CCTTCEEEEEEE-EEEEECTTCEEEEEEEEEECTTSSEE
T ss_pred EEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCc--C---CCeeeeEEEeeC-CceEeCCCCEEEEEEEEEECCCCCcE
Confidence 89999999999999999999863 35899999962 2 459999999996 7999999999998874 45678
Q ss_pred EEEEEeee
Q 044245 349 VSYELKSQ 356 (694)
Q Consensus 349 ~~~~~~~~ 356 (694)
+|++|..+
T Consensus 316 ~~~~~~~~ 323 (348)
T 2y1w_A 316 ISIVAQVD 323 (348)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEc
Confidence 88888654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=292.46 Aligned_cols=262 Identities=14% Similarity=0.184 Sum_probs=203.1
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~ 459 (694)
..||+|..|+.+|+++|.++...+++++||||||| |.+++++|++| +++|+++|. ++++ +.+++.++.||++ ++
T Consensus 26 ~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~--s~~~-~~a~~~~~~~~l~-~~ 100 (348)
T 2y1w_A 26 QNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEA--STMA-QHAEVLVKSNNLT-DR 100 (348)
T ss_dssp HHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEEC--STHH-HHHHHHHHHTTCT-TT
T ss_pred HHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECC--HHHH-HHHHHHHHHcCCC-Cc
Confidence 47999999999999999999988889999999999 99999999996 899999999 6665 6788999999997 89
Q ss_pred EEEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhhhh
Q 044245 460 VEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWN 539 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l~~ 539 (694)
|+++.++.+++.. ++++|+|||++++.. +.....+. ..+. ..++|+|||.++|+.++++++|++.++++.
T Consensus 101 v~~~~~d~~~~~~----~~~~D~Ivs~~~~~~---~~~~~~~~--~l~~-~~~~LkpgG~li~~~~~~~~~~i~~~~~~~ 170 (348)
T 2y1w_A 101 IVVIPGKVEEVSL----PEQVDIIISEPMGYM---LFNERMLE--SYLH-AKKYLKPSGNMFPTIGDVHLAPFTDEQLYM 170 (348)
T ss_dssp EEEEESCTTTCCC----SSCEEEEEECCCBTT---BTTTSHHH--HHHH-GGGGEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred EEEEEcchhhCCC----CCceeEEEEeCchhc---CChHHHHH--HHHH-HHhhcCCCeEEEEecCcEEEEEecchHHhh
Confidence 9999998776643 368999999975331 11111121 2222 235899999999999999999999888764
Q ss_pred hc----CCC--Ccccccccccchhhhhh-cCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-CC---ccee
Q 044245 540 SR----RSL--SKIEGFDHAVVNTSLGA-CGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-SP---CQGK 608 (694)
Q Consensus 540 ~~----~~~--~~v~G~d~s~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~~---~~~~ 608 (694)
.. ..| ..++|+||+.+.+.... .+..+... .. ..+....+.....+||.+.. .+ +..+
T Consensus 171 ~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d---~~--------~~~~~~~~~~~~~~df~~~~~~~~~~~~~~ 239 (348)
T 2y1w_A 171 EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVD---TF--------DIRILMAKSVKYTVNFLEAKEGDLHRIEIP 239 (348)
T ss_dssp HHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEE---CC--------CGGGBCBCCEEEEEETTTCCGGGGSEEEEE
T ss_pred hhccccCcccccccCcccHHHhhhHHHhhhccCCeEE---eE--------CCeeecCcceEEEEECCcCChHHhceeeee
Confidence 32 123 48999999998876432 12222211 11 01344455566788999875 22 3456
Q ss_pred EEEEecCCeeeeEEEEEEEEEecCCC-cEEEecCCC--CCceeeeEEecCcceeccccCCCCC
Q 044245 609 VQVEFTEPGLCHGFALWIDWVLDSEN-SIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 609 ~~~~~~~~g~~~g~~~Wfd~~~~~~~-~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
++++++++|+||||++|||+.|+++. .+.+||+|. .+||+|++++|++|+.|++|+.+.|
T Consensus 240 ~~~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~~g~~i~~ 302 (348)
T 2y1w_A 240 FKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSG 302 (348)
T ss_dssp EEEEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred EEEEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceEeCCCCEEEE
Confidence 78889999999999999999998654 578999997 5799999999999999999998776
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=286.42 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=214.9
Q ss_pred HHHhhCCHHHHHHHHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH
Q 044245 43 YLDMLNDSYRNRAYRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL 120 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~ 120 (694)
...|++|..+++.|.+++.+.+ .++.+|||||||+|.+++.++++++ .+|+|+|.|+ |++.|++++
T Consensus 133 ~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~-----------~~V~gvD~s~-~l~~A~~~~ 200 (480)
T 3b3j_A 133 QQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA-----------RKIYAVEAST-MAQHAEVLV 200 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC-----------SEEEEEECHH-HHHHHHHHH
T ss_pred chhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCC-----------CEEEEEEcHH-HHHHHHHHH
Confidence 5578999999999999987754 4678999999999999999998764 6999999998 999999999
Q ss_pred HHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecchh
Q 044245 121 HVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTF 200 (694)
Q Consensus 121 ~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~ 200 (694)
+.+|+.++|+++.+++.++.. +++||+|+++++++++..+..+..+.. .+++|+|||+++|..++++.+|++.+.
T Consensus 201 ~~~gl~~~v~~~~~d~~~~~~----~~~fD~Ivs~~~~~~~~~e~~~~~l~~-~~~~LkpgG~li~~~~~~~~~pi~~~~ 275 (480)
T 3b3j_A 201 KSNNLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLH-AKKYLKPSGNMFPTIGDVHLAPFTDEQ 275 (480)
T ss_dssp HHTTCTTTEEEEESCTTTCCC----SSCEEEEECCCCHHHHTCHHHHHHHHH-GGGGEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHcCCCCcEEEEECchhhCcc----CCCeEEEEEeCchHhcCcHHHHHHHHH-HHHhcCCCCEEEEEeceeeeeccCchH
Confidence 999998899999999988643 468999999988777766666666664 457999999999999999999999887
Q ss_pred hhhhc--ccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCCCC---ceeeEEE
Q 044245 201 LWKLH--DLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSH---GEAELQI 275 (694)
Q Consensus 201 l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~~~---~~~~~~~ 275 (694)
++... ....-......|++++.. .....-.....++ ++.. ..+.+..+...+.+||.+....+ ....+++
T Consensus 276 l~~e~~~~~~~w~~~~~~g~dl~~l--~~~~~~~~f~~pv-vd~~--~~~~~y~~tl~~~~d~~~~~~~~l~~~~~~~~~ 350 (480)
T 3b3j_A 276 LYMEQFTKANFWYQPSFHGVDLSAL--RGAAVDEYFRQPV-VDTF--DIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKF 350 (480)
T ss_dssp HHHHHHHHHHHHHSSCBTTBCCGGG--HHHHHHHHTTSCE-ECCC--CSTTBCSCCEEEEEETTTCCTTTTTEEEEEEEE
T ss_pred HHHHHhhccCccccccCCCcChhhh--hhHHHHhccCCcE-EEEe--ecccccchhhhhhhhhhcCChhhhcceeeeEEE
Confidence 65210 000000123567777653 1110000001111 1111 12333334445789998765432 2467888
Q ss_pred EEccCCceeEEEEEEEEeecCC-CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE-----ecceEE
Q 044245 276 KSTDDGRVHAVVSWWVLQLDRE-GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL-----HTETSV 349 (694)
Q Consensus 276 ~~~~~G~~~g~~~Wf~~~l~~~-~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~-----~d~~~~ 349 (694)
++.++|++|||++||+++|++. ..+.|||+|.. + .+||+|++|+|+ +|+.|++||+|.+++. ++...+
T Consensus 351 ~~~~~g~~hg~~~wFd~~~~~~~~~v~lST~P~~--~---~thW~q~~~~l~-~p~~v~~g~~i~g~~~~~~~~~~~~~v 424 (480)
T 3b3j_A 351 HMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTE--P---LTHWYQVRCLFQ-SPLFAKAGDTLSGTCLLIANKRQSYDI 424 (480)
T ss_dssp ECSSCEEEEEEEEEEEEEEECSSCEEESSSCCSS--S---CCCSEEEEEEEE-EEEEECTTCEEEEEEEEEECTTSSEEE
T ss_pred EEccCcEEEEEEEEEEEEEcCCCCceEEeCCCCc--C---CCeeeeEEEEeC-CceEeCCCCEEEEEEEEEECCCCCcEE
Confidence 9999999999999999999863 35889999962 2 469999999996 7999999999998864 458899
Q ss_pred EEEEeeec
Q 044245 350 SYELKSQI 357 (694)
Q Consensus 350 ~~~~~~~~ 357 (694)
||+|..+.
T Consensus 425 ~~~~~~~~ 432 (480)
T 3b3j_A 425 SIVAQVDQ 432 (480)
T ss_dssp EEEEEETT
T ss_pred EEEEEEcc
Confidence 99987654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=285.30 Aligned_cols=261 Identities=16% Similarity=0.199 Sum_probs=201.2
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 380 RIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 380 ~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
.-.||+|..|++.|.++|.++...+++++||||||| |.+++++|+.| +.+|+++|. ++ +.+.|++.++.||++ +
T Consensus 133 ~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~--s~-~l~~A~~~~~~~gl~-~ 207 (480)
T 3b3j_A 133 QQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEA--ST-MAQHAEVLVKSNNLT-D 207 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEEC--HH-HHHHHHHHHHHTTCT-T
T ss_pred chhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEc--HH-HHHHHHHHHHHcCCC-C
Confidence 456999999999999999998877788999999999 99999999986 889999999 67 456889999999998 8
Q ss_pred cEEEeecccccccccccCCccccEEEcccc-c-cCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChh
Q 044245 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPY-Y-FGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPD 536 (694)
Q Consensus 459 ~i~vi~~~~~~~~~~~l~~~~vDvivsE~~-~-~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~ 536 (694)
+|++++++.+++.. ++++|+|||+++ | ...+.++. ..+. ..++|+|||.++|+.++++++|++.++
T Consensus 208 ~v~~~~~d~~~~~~----~~~fD~Ivs~~~~~~~~~e~~~~-------~l~~-~~~~LkpgG~li~~~~~~~~~pi~~~~ 275 (480)
T 3b3j_A 208 RIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLE-------SYLH-AKKYLKPSGNMFPTIGDVHLAPFTDEQ 275 (480)
T ss_dssp TEEEEESCTTTCCC----SSCEEEEECCCCHHHHTCHHHHH-------HHHH-GGGGEEEEEEEESCEEEEEEEEECCHH
T ss_pred cEEEEECchhhCcc----CCCeEEEEEeCchHhcCcHHHHH-------HHHH-HHHhcCCCCEEEEEeceeeeeccCchH
Confidence 99999998776542 368999999974 2 22122222 2222 245899999999999999999999987
Q ss_pred hhhhcC----CC--Ccccccccccchhhhh-hcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-CC---c
Q 044245 537 IWNSRR----SL--SKIEGFDHAVVNTSLG-ACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-SP---C 605 (694)
Q Consensus 537 l~~~~~----~~--~~v~G~d~s~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~~---~ 605 (694)
++.++. .| ..++|+||+.+.+... ..+..+... ... .+.+..+.....+||.+.. .+ +
T Consensus 276 l~~e~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd---~~~--------~~~~y~~tl~~~~d~~~~~~~~l~~~ 344 (480)
T 3b3j_A 276 LYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVD---TFD--------IRILMAKSVKYTVNFLEAKEGDLHRI 344 (480)
T ss_dssp HHHHHHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEEC---CCC--------STTBCSCCEEEEEETTTCCTTTTTEE
T ss_pred HHHHHhhccCccccccCCCcChhhhhhHHHHhccCCcEEE---Eee--------cccccchhhhhhhhhhcCChhhhcce
Confidence 764321 12 4899999999887542 222222211 110 1233344455799998865 23 3
Q ss_pred ceeEEEEecCCeeeeEEEEEEEEEecCCC-cEEEecCCC--CCceeeeEEecCcceeccccCCCCC
Q 044245 606 QGKVQVEFTEPGLCHGFALWIDWVLDSEN-SIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 606 ~~~~~~~~~~~g~~~g~~~Wfd~~~~~~~-~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
...++++++++|++|||++|||+.|+++. .+.|||+|. .+||+|++|+|++|+.|++|+.+.|
T Consensus 345 ~~~~~~~~~~~g~~hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~~i~g 410 (480)
T 3b3j_A 345 EIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSG 410 (480)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTCEEEE
T ss_pred eeeEEEEEccCcEEEEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCCEEEE
Confidence 45678889999999999999999998654 578999997 5799999999999999999997765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-12 Score=146.03 Aligned_cols=111 Identities=11% Similarity=0.009 Sum_probs=77.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+|+.|||+||| |.+++.||+.| |++|+++|. ++.+.+.++++++.||++.+++++++++..+.-. . ..++.|+|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~--s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~-~-~~~~fD~I 613 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDM--SRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLR-E-ANEQFDLI 613 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH-H-CCCCEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeC--CHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-h-cCCCccEE
Confidence 57899999999 99999999975 999999999 8888889999999999963589999998765321 1 14689999
Q ss_pred Eccc-cccCCcccc-CcchhhHH--HHHhhcccccCCCceEE
Q 044245 484 IGEP-YYFGNDGML-PWQNLRFW--KERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~-~~~~~e~~l-~w~~l~f~--~~r~~~~~~L~p~g~i~ 521 (694)
|+.| +|.....+. .|+..... +.+. ..++|+|||.++
T Consensus 614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~-a~~~LkpgG~L~ 654 (703)
T 3v97_A 614 FIDPPTFSNSKRMEDAFDVQRDHLALMKD-LKRLLRAGGTIM 654 (703)
T ss_dssp EECCCSBC-------CCBHHHHHHHHHHH-HHHHEEEEEEEE
T ss_pred EECCccccCCccchhHHHHHHHHHHHHHH-HHHhcCCCcEEE
Confidence 9985 543211111 12222110 1111 124799999877
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=136.42 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=90.6
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
.+.+.+.++.+|||||||+|.+++.+++.... +..+|+|+|.|+.|++.|+++++..+...+|+++++|+.+
T Consensus 63 l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~--------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 63 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHH--------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 134 (261)
T ss_dssp HHHHHCCTTCEEEEETCTTTHHHHHHHHTCCS--------SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred HHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCC--------CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence 34456788999999999999999999987541 2358999999999999999999998888899999999998
Q ss_pred cccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 139 LEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++. +++|+|++...-.++ .......++..+.+.|+|||+++-
T Consensus 135 ~~~-----~~~d~v~~~~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii 176 (261)
T 4gek_A 135 IAI-----ENASMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVL 176 (261)
T ss_dssp CCC-----CSEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccc-----cccccceeeeeeeec-CchhHhHHHHHHHHHcCCCcEEEE
Confidence 764 469999986433322 222234567777889999999874
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=125.95 Aligned_cols=115 Identities=11% Similarity=-0.015 Sum_probs=86.3
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
....+...+.++.+|||+|||+|.+++.+++.+ .+|+|+|.|+.|++.|+++++.+++ +++++++++
T Consensus 12 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~------------~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~ 78 (185)
T 3mti_A 12 SHDFLAEVLDDESIVVDATMGNGNDTAFLAGLS------------KKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDG 78 (185)
T ss_dssp HHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTS------------SEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESC
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhC------------CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCc
Confidence 344556667789999999999999999999884 4999999999999999999999999 589999987
Q ss_pred ccccccccCCCCCccEEEEcccccccc-------CCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELL-------GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~-------~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++.. ..+++||+|++++ ++... .......++....++|+|||+++-
T Consensus 79 ~~~l~~--~~~~~fD~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 79 HENLDH--YVREPIRAAIFNL-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp GGGGGG--TCCSCEEEEEEEE-C-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHh--hccCCcCEEEEeC-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 776542 1246899999864 11110 001122344556679999998864
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=123.88 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=84.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++.+. .+|+++|.|+.|++.|+++++.+++ ++++++++|+.++... .
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~ 109 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGA-----------ASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAA-G 109 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-----------SEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHH-C
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCC-----------CeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhh-c
Confidence 4688999999999999998887764 6899999999999999999999999 5899999999876421 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHh--ccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDR--LLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~--~L~p~G~iiP 186 (694)
..++||+|++++.... .......++..+.+ +|+|||+++-
T Consensus 110 ~~~~fD~i~~~~p~~~--~~~~~~~~l~~~~~~~~L~pgG~l~~ 151 (189)
T 3p9n_A 110 TTSPVDLVLADPPYNV--DSADVDAILAALGTNGWTREGTVAVV 151 (189)
T ss_dssp CSSCCSEEEECCCTTS--CHHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred cCCCccEEEECCCCCc--chhhHHHHHHHHHhcCccCCCeEEEE
Confidence 1368999999765321 11234555666666 9999999874
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=127.22 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=89.5
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+++.+.+.++.+|||||||+|.+++.+++.++ ..+|+|+|+++.+++.|+++++.||+.++|+++.+|.
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~----------~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~ 81 (230)
T 3lec_A 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY----------CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG 81 (230)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC----------EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 455777888899999999999999999999874 4689999999999999999999999999999999998
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+...+ .++||+|+..-++ -..+..++......|+++|.++-+
T Consensus 82 l~~~~~---~~~~D~IviaGmG-----g~lI~~IL~~~~~~l~~~~~lIlq 124 (230)
T 3lec_A 82 LSAFEE---ADNIDTITICGMG-----GRLIADILNNDIDKLQHVKTLVLQ 124 (230)
T ss_dssp GGGCCG---GGCCCEEEEEEEC-----HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred hhcccc---ccccCEEEEeCCc-----hHHHHHHHHHHHHHhCcCCEEEEE
Confidence 765321 1379998753333 223555666666678888876633
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=125.99 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=88.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+++.+.+.++.+|||||||+|.+++.+++.++ ..+|+|+|+|+.+++.|++|++.||+.++|+++.+|.
T Consensus 6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~----------~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~ 75 (225)
T 3kr9_A 6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ----------IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG 75 (225)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS----------EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch
Confidence 356777788899999999999999999999874 4689999999999999999999999998999999997
Q ss_pred cc-cccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DE-LEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~-l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+ ++. .++||+|+..-+| -..+..++......|+++|.++-+
T Consensus 76 l~~l~~----~~~~D~IviaG~G-----g~~i~~Il~~~~~~L~~~~~lVlq 118 (225)
T 3kr9_A 76 LAAFEE----TDQVSVITIAGMG-----GRLIARILEEGLGKLANVERLILQ 118 (225)
T ss_dssp GGGCCG----GGCCCEEEEEEEC-----HHHHHHHHHHTGGGCTTCCEEEEE
T ss_pred hhhccc----CcCCCEEEEcCCC-----hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 54 321 1269988864333 223555666666788888877643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=127.07 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=89.2
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+++.+.+.++.+|||||||+|.+++.+++.++ ..+|+|+|+|+.+++.|+++++.||+.++|+++.+|.
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~----------~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~ 81 (244)
T 3gnl_A 12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQT----------ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG 81 (244)
T ss_dssp HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS----------EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch
Confidence 456778888899999999999999999999874 3689999999999999999999999998999999998
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+...+ .++||+|+..-+| -..+..++......|++++.+|-+
T Consensus 82 l~~~~~---~~~~D~IviagmG-----g~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 82 LAVIEK---KDAIDTIVIAGMG-----GTLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp GGGCCG---GGCCCEEEEEEEC-----HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred hhccCc---cccccEEEEeCCc-----hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 764321 1359998864333 223555666666678887776643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=132.20 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=89.4
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++.+.+.+.++.+|||+|||+|.+++.+++.++ .+|+|+|.|+.|++.|+++++.|++.++++++++|.
T Consensus 116 ~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~-----------~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~ 184 (278)
T 2frn_A 116 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGK-----------AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN 184 (278)
T ss_dssp HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTC-----------CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT
T ss_pred HHHHHHhCCCCCEEEEecccCCHHHHHHHHhCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH
Confidence 444555677799999999999999999999986 479999999999999999999999988899999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++.. .++||+|++++... ...+.....++|+|||+++-.
T Consensus 185 ~~~~~----~~~fD~Vi~~~p~~-------~~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 185 RDFPG----ENIADRILMGYVVR-------THEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp TTCCC----CSCEEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred HHhcc----cCCccEEEECCchh-------HHHHHHHHHHHCCCCeEEEEE
Confidence 88753 46899999976532 123344455689999998743
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-12 Score=128.06 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=87.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... .+|+++|.|+.+++.|+++++.+++.++++++.++..+++.+
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~- 126 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARD-----------VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE- 126 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSC-----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-----------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC-
Confidence 45688999999999999999998754 599999999999999999999999988999999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|++..+-..+ .....++..+.++|+|||+++-.
T Consensus 127 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~ 165 (273)
T 3bus_A 127 --DASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIA 165 (273)
T ss_dssp --TTCEEEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEE
T ss_pred --CCCccEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2689999985322221 22466777778899999988754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=130.69 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=86.8
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.+.+.+.+|.+|||+|||+|.+++.+|+.|+ .+|+|+|+|+.+++.+++|++.|++.++|+++++|..
T Consensus 117 ~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~-----------~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~ 185 (278)
T 3k6r_A 117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGK-----------AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR 185 (278)
T ss_dssp HHHHHHCCTTCEEEETTCTTTTTTHHHHHHTC-----------CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT
T ss_pred HHHHHhcCCCCEEEEecCcCcHHHHHHHHhcC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHH
Confidence 44666788899999999999999999999986 6899999999999999999999999999999999998
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
++.. .++||.|+.+++.+. .+.+..+ -++|++||.+
T Consensus 186 ~~~~----~~~~D~Vi~~~p~~~------~~~l~~a-~~~lk~gG~i 221 (278)
T 3k6r_A 186 DFPG----ENIADRILMGYVVRT------HEFIPKA-LSIAKDGAII 221 (278)
T ss_dssp TCCC----CSCEEEEEECCCSSG------GGGHHHH-HHHEEEEEEE
T ss_pred Hhcc----ccCCCEEEECCCCcH------HHHHHHH-HHHcCCCCEE
Confidence 8752 368999998765432 1222233 3589999976
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=125.88 Aligned_cols=116 Identities=20% Similarity=0.104 Sum_probs=92.6
Q ss_pred HHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
.+...+.+. +.++.+|||||||+|.++..+++..+ .+|+++|+|+.+++.|+++++.+++.++|+++.
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 128 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-----------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 128 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-----------CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 344444443 56788999999999999999999843 489999999999999999999999998999999
Q ss_pred ccccccccccCCCCCccEEEEcccccccc------CCChHHHHHHHHHhccCCCCeEEcC
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELL------GEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~------~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+|..++ +++||+|++..+-..+. +....+.++..+.++|+|||+++-.
T Consensus 129 ~d~~~~------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 182 (302)
T 3hem_A 129 QGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182 (302)
T ss_dssp CCGGGC------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred CCHHHc------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 999875 37899999864333221 2244567777888899999999753
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=124.28 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=89.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ .+|+++|+|+.+++.|+++++.+|+.++++++.++..+++.+
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~- 111 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVK-----------GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ- 111 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCC-----------SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC-
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC-
Confidence 45678999999999999999999975 599999999999999999999999998899999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
+++||+|++...-..+ -.+.++..+.++|+|||+++-..
T Consensus 112 --~~~fD~v~~~~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 112 --NEELDLIWSEGAIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp --TTCEEEEEEESCSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CCCEEEEEecChHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 3689999986433222 25667777788999999987543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=122.59 Aligned_cols=106 Identities=21% Similarity=0.095 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEeccccccccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~~ 144 (694)
++.+|||+|||+|.+++.+++.++ .+|+++|.|+.|++.|+++++.+++. ++++++.+|..++... .
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 120 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-----------KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ-P 120 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-----------SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS-C
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-----------CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh-h
Confidence 578999999999999998887765 58999999999999999999999984 5899999998775321 0
Q ss_pred CCCC-ccEEEEccccccccCCChHHHHHHHH--HhccCCCCeEEcC
Q 044245 145 IDSR-ADILVSEILDSELLGEGLIPTLQHAH--DRLLVENPLTVPC 187 (694)
Q Consensus 145 l~~~-~DlIvse~~~~~l~~e~~l~~l~~~~--~~~L~p~G~iiP~ 187 (694)
..++ ||+|++++.. ..+..+.++..+ .++|+|||.++-.
T Consensus 121 ~~~~~fD~I~~~~~~----~~~~~~~~l~~~~~~~~LkpgG~l~i~ 162 (201)
T 2ift_A 121 QNQPHFDVVFLDPPF----HFNLAEQAISLLCENNWLKPNALIYVE 162 (201)
T ss_dssp CSSCCEEEEEECCCS----SSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccCCCCCEEEECCCC----CCccHHHHHHHHHhcCccCCCcEEEEE
Confidence 1367 9999998652 234455555555 5689999988643
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=119.72 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=87.6
Q ss_pred HhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc
Q 044245 61 DKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE 140 (694)
Q Consensus 61 ~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~ 140 (694)
...+.++.+|||+|||+|.++..+++... +..+|+++|.++.+++.|+++++.+++.++++++++|..++.
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 87 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGNGNDTAFLASLVG---------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD 87 (197)
T ss_dssp HHHCCTTCEEEESCCTTSHHHHHHHHHHC---------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG
T ss_pred HhcCCCCCEEEEcCCCCCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh
Confidence 34567889999999999999999998842 135999999999999999999999999779999999988875
Q ss_pred cccCCCCCccEEEEcccccc-----ccC-CChHHHHHHHHHhccCCCCeEE
Q 044245 141 VGVDIDSRADILVSEILDSE-----LLG-EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~-----l~~-e~~l~~l~~~~~~~L~p~G~ii 185 (694)
. ..+++||+|++++...- ... ......++....++|+|||+++
T Consensus 88 ~--~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~ 136 (197)
T 3eey_A 88 K--YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136 (197)
T ss_dssp G--TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred h--hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEE
Confidence 2 23478999998753200 000 0122346666677999999887
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=126.22 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.+++.+++..+ ..+|+++|.++.+++.|+++++.+|+. +|++++++++++......
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~ 148 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRP----------ELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGH 148 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccccc
Confidence 578999999999999999998854 369999999999999999999999997 599999999887532122
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|+|..+. .++.+.....++|+|||+++-
T Consensus 149 ~~~fD~I~s~a~~-------~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 149 REAYARAVARAVA-------PLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp TTCEEEEEEESSC-------CHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCceEEEECCcC-------CHHHHHHHHHHHcCCCeEEEE
Confidence 3689999996432 256777788889999998873
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-11 Score=117.23 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=82.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.+++.+++.+ .+|+++|.|+.|++.|+++++.+|++++++++.+|..+...
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~~------------~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-- 118 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLAG------------GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-- 118 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTT------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT--
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcC------------CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc--
Confidence 5668899999999999999999984 49999999999999999999999998799999999887321
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|+++. .+ ..+ ++..+.++|+|||+++-
T Consensus 119 -~~~~~D~v~~~~---~~----~~~-~l~~~~~~LkpgG~lv~ 152 (204)
T 3njr_A 119 -DLPLPEAVFIGG---GG----SQA-LYDRLWEWLAPGTRIVA 152 (204)
T ss_dssp -TSCCCSEEEECS---CC----CHH-HHHHHHHHSCTTCEEEE
T ss_pred -cCCCCCEEEECC---cc----cHH-HHHHHHHhcCCCcEEEE
Confidence 124799999753 11 244 66777789999999874
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=127.03 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.++ .+|+|+|+++.+++.|+++++.+++.++++++++|+.++... ..
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~-----------~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~~ 116 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK-----------AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-IP 116 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC-----------CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-SC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC-----------CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-hc
Confidence 688999999999999999999875 499999999999999999999999998999999999887521 11
Q ss_pred CCCccEEEEccccccccCC-----------------ChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGE-----------------GLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e-----------------~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++++........ ..+..++....++|+|||+++-
T Consensus 117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 3689999998764322000 1234577777789999998864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=122.10 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=82.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++.+. .+|+++|.|+.|++.|+++++.+++.++++++.+|+.+... .
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~ 96 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGM-----------SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID--C 96 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTC-----------CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH--H
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH--h
Confidence 4678999999999999999998854 69999999999999999999999998799999999877421 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHH--hccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHD--RLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~--~~L~p~G~iiP 186 (694)
.+++||+|++++.... ...+.+...+. ++|+|||+++-
T Consensus 97 ~~~~fD~i~~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 97 LTGRFDLVFLDPPYAK----ETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp BCSCEEEEEECCSSHH----HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hcCCCCEEEECCCCCc----chHHHHHHHHHhCCCcCCCcEEEE
Confidence 2357999999754311 12344444444 78999998763
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=124.36 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=89.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++++.++++++++++.+|..+++.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 111 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVT-----------GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR- 111 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCS-----------SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC-
Confidence 45689999999999999999998843 699999999999999999999999988999999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.++||+|++..+-..+ -...++..+.++|+|||.++-..
T Consensus 112 --~~~fD~i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 112 --NEELDLIWSEGAIYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp --TTCEEEEEESSCGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --CCCEEEEEEcCCceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 3689999986443333 25667777888999999987543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-11 Score=115.81 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=84.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.+++.+++.++ ..+|+++|.|+.+++.|+++++.+++ ++++++.++..+...
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~-- 104 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMP----------NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD-- 104 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCT----------TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT--
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh--
Confidence 56789999999999999999999974 36999999999999999999999998 589999999865432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++.... . ..+.++....++|+|||+++-
T Consensus 105 -~~~~~D~i~~~~~~----~--~~~~~l~~~~~~LkpgG~l~~ 140 (204)
T 3e05_A 105 -DLPDPDRVFIGGSG----G--MLEEIIDAVDRRLKSEGVIVL 140 (204)
T ss_dssp -TSCCCSEEEESCCT----T--CHHHHHHHHHHHCCTTCEEEE
T ss_pred -cCCCCCEEEECCCC----c--CHHHHHHHHHHhcCCCeEEEE
Confidence 11579999985322 1 356677777789999999874
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-11 Score=118.92 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=84.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC----cEEEEeccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR----NIKVINKRSDELE 140 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~----~I~vi~~~~~~l~ 140 (694)
.++.+|||||||+|.++..+++.++ ..+|+++|.|+.|++.|+++++.+++++ +++++.++.....
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF----------FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT----------CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC----------CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 4678999999999999999998764 3599999999999999999999888875 8999999986654
Q ss_pred cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
. ..++||+|++..+-..+ .+.....++..+.++|+|||.++
T Consensus 98 ~---~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li 138 (217)
T 3jwh_A 98 K---RFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIV 138 (217)
T ss_dssp G---GGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEE
T ss_pred c---cCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEE
Confidence 3 22689999985333222 22234567777788999999776
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=119.56 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.++ .+|+++|.|+.|++.|+++++.+++ ++++++++|+.+... ..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-----------~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~--~~ 119 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-----------AGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLA--QK 119 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-----------SEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHS--SC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-----------CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHh--hc
Confidence 578999999999999998888775 5999999999999999999999998 589999999877421 12
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHH--hccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHD--RLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~--~~L~p~G~iiP 186 (694)
.++||+|++++.. ..+..+.++..+. ++|+|||+++-
T Consensus 120 ~~~fD~V~~~~p~----~~~~~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 120 GTPHNIVFVDPPF----RRGLLEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp CCCEEEEEECCSS----STTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCCCEEEECCCC----CCCcHHHHHHHHHhcCccCCCcEEEE
Confidence 3689999998652 1233444454443 46999998763
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=123.78 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=85.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.+++.+++... ..+|+++|.|+.|++.|+++++.++++ +|+++++++.++.....
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 137 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP----------HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKD 137 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC----------CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhccccc
Confidence 4678999999999999999997643 368999999999999999999999986 69999999988753211
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++..+ ..+..++....++|+|||.++-
T Consensus 138 ~~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 138 VRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp TTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEE
Confidence 2468999998542 2266777788889999999864
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-11 Score=120.43 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=86.6
Q ss_pred HHhhccCCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 60 IDKMVTKSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
+...+.++.+|||+||| +|.+++.+++.+. .+|+|+|+|+.+++.|+++++.+++ +++++.+|...
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 115 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFN-----------CKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGI 115 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHC-----------CEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCS
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchh
Confidence 44556788999999999 9999999999843 5999999999999999999999998 79999999755
Q ss_pred cccccCCCCCccEEEEcccccccc----------------CCChHHHHHHHHHhccCCCCeEEc
Q 044245 139 LEVGVDIDSRADILVSEILDSELL----------------GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~----------------~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.. ..+++||+|++++.....- +......++....++|+|||+++-
T Consensus 116 ~~~--~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 116 IKG--VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp STT--TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhh--cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 431 1136899999986543211 111235677777889999998763
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-11 Score=121.17 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=85.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... .+|+++|.|+.|++.|+++++.+|+.++|+++.+++.++..
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 100 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHG-----------ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-- 100 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTC-----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcC-----------CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc--
Confidence 46789999999999999999998753 58999999999999999999999998899999999988753
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++....... . -...++..+.++|+|||+++-
T Consensus 101 --~~~fD~V~~~~~~~~~--~-~~~~~l~~~~r~LkpgG~l~~ 138 (256)
T 1nkv_A 101 --NEKCDVAACVGATWIA--G-GFAGAEELLAQSLKPGGIMLI 138 (256)
T ss_dssp --SSCEEEEEEESCGGGT--S-SSHHHHHHHTTSEEEEEEEEE
T ss_pred --CCCCCEEEECCChHhc--C-CHHHHHHHHHHHcCCCeEEEE
Confidence 3689999984322211 1 245566677889999998874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=124.80 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=87.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ .+|+++|.++.+++.|+++++.+|+.++++++.+|..+++++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 182 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG-----------SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD- 182 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC-
Confidence 34678999999999999999999833 489999999999999999999999988999999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++..+-..+ + ...++..+.++|+|||+++-
T Consensus 183 --~~~fD~V~~~~~l~~~---~-~~~~l~~~~~~LkpgG~l~~ 219 (312)
T 3vc1_A 183 --KGAVTASWNNESTMYV---D-LHDLFSEHSRFLKVGGRYVT 219 (312)
T ss_dssp --TTCEEEEEEESCGGGS---C-HHHHHHHHHHHEEEEEEEEE
T ss_pred --CCCEeEEEECCchhhC---C-HHHHHHHHHHHcCCCcEEEE
Confidence 2689999985433322 2 67777777889999999873
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.1e-11 Score=116.66 Aligned_cols=104 Identities=20% Similarity=0.192 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++... .+|+++|.|+.+++.|+++++.+++.++++++.++..+++.+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~-----------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--- 108 (219)
T 3dlc_A 43 TAGTCIDIGSGPGALSIALAKQSD-----------FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE--- 108 (219)
T ss_dssp CEEEEEEETCTTSHHHHHHHHHSE-----------EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC---
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC---
Confidence 334999999999999999999832 599999999999999999999999988999999999887642
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.++ .....++..+.++|+|||.++-
T Consensus 109 ~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~ 146 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYI 146 (219)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEE
Confidence 3689999986433222 2355666677789999998764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-11 Score=122.05 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=80.6
Q ss_pred ccCCCEEEEEcCCCCHHH-HHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLS-MMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~ls-l~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
+.++.+|||||||+|.++ +.+|+..+ .+|+|+|+|+.|++.|+++++..|+ ++|+++++|..+++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~g-----------a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-- 185 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYG-----------MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-- 185 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTC-----------CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccC-----------CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--
Confidence 567899999999998655 55665422 5999999999999999999999999 79999999998864
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.||+|++... . .....+...+.+.|+|||+++-
T Consensus 186 ---d~~FDvV~~~a~----~--~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 186 ---GLEFDVLMVAAL----A--EPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp ---GCCCSEEEECTT----C--SCHHHHHHHHHHHCCTTCEEEE
T ss_pred ---CCCcCEEEECCC----c--cCHHHHHHHHHHHcCCCcEEEE
Confidence 268999997422 1 2345666777789999999984
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-11 Score=117.81 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=84.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC----cEEEEeccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR----NIKVINKRSDELE 140 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~----~I~vi~~~~~~l~ 140 (694)
.++.+|||||||+|.++..+++.++ ..+|+++|+|+.+++.|++++..+++++ +++++.++...+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS----------FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT----------CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC----------CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence 4678999999999999999998764 3599999999999999999998888875 8999999986654
Q ss_pred cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.. .++||+|++..+-..+ .+..+..++..+.++|+|||.++
T Consensus 98 ~~---~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i 138 (219)
T 3jwg_A 98 KR---FSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIV 138 (219)
T ss_dssp GG---GTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEE
T ss_pred cc---cCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEE
Confidence 32 3689999985333222 22234567777788999999775
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-11 Score=118.51 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 52 RNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 52 r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
+.+.+.+.+.+.+.++.+|||||||+|.++..+++.++ +|+++|.|+.+++.|+++.+.++ .++++
T Consensus 24 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~--~~~~~ 89 (227)
T 1ve3_A 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF------------EVVGVDISEDMIRKAREYAKSRE--SNVEF 89 (227)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTT--CCCEE
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHhcC--CCceE
Confidence 34555566666666789999999999999999998874 89999999999999999998887 48999
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.+|..++..+ +++||+|++..... +........++..+.++|+|||.++-
T Consensus 90 ~~~d~~~~~~~---~~~~D~v~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 90 IVGDARKLSFE---DKTFDYVIFIDSIV-HFEPLELNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp EECCTTSCCSC---TTCEEEEEEESCGG-GCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECchhcCCCC---CCcEEEEEEcCchH-hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99998886532 26899999864311 11112244566677789999998863
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=114.87 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=79.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc-c
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-G 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-~ 142 (694)
+.++.+|||+|||+|.++..+++.++ +|+++|.|+.|++.|+++++.+++ +++++++|+.+... .
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~------------~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~ 104 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGW------------EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEA 104 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC------------EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHH
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCC------------eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhh
Confidence 33688999999999999999999875 599999999999999999999988 79999999877421 0
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
....++||+|++++... ...+..+..+.. .++|+|||.++-
T Consensus 105 ~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~--~~~L~~gG~~~~ 145 (171)
T 1ws6_A 105 KAQGERFTVAFMAPPYA-MDLAALFGELLA--SGLVEAGGLYVL 145 (171)
T ss_dssp HHTTCCEEEEEECCCTT-SCTTHHHHHHHH--HTCEEEEEEEEE
T ss_pred hccCCceEEEEECCCCc-hhHHHHHHHHHh--hcccCCCcEEEE
Confidence 11124799999976432 112222333322 379999998753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=129.32 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 044245 50 SYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNI 129 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I 129 (694)
..|...|.+.+...+.++.+|||||||+|.++..++++.. +..+|+++|.|+.+++.|++++..+++.+++
T Consensus 102 ~~~~~~~~~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v 172 (305)
T 3ocj_A 102 RERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSAC---------PGVQLVGIDYDPEALDGATRLAAGHALAGQI 172 (305)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEETTCTTCHHHHTSCCTTC---------TTCEEEEEESCHHHHHHHHHHHTTSTTGGGE
T ss_pred hHHHHHHHHHHHhhCCCCCEEEEecCCCCHHHHHHHHhcC---------CCCeEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 4444557777776788899999999999999988853222 2469999999999999999999999998889
Q ss_pred EEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 130 KVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 130 ~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++.+|..+++. +++||+|++..+..++........++..+.++|+|||+++-
T Consensus 173 ~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 225 (305)
T 3ocj_A 173 TLHRQDAWKLDT----REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225 (305)
T ss_dssp EEEECCGGGCCC----CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECchhcCCc----cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999999998753 26899999854333322222233466777789999999874
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=116.82 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=82.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-c
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-V 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~ 143 (694)
.++.+|||+|||+|.+++.+++.+. .+|+++|.|+.|++.|+++++.+++.++++++++|+.+.... .
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGM-----------DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY 111 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHH
Confidence 3678999999999999998888654 699999999999999999999999877999999998774310 0
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHH--HhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAH--DRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~--~~~L~p~G~iiP 186 (694)
..+++||+|++++... ....+.....+ .++|+|||.++-
T Consensus 112 ~~~~~fD~i~~~~~~~----~~~~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 112 EEKLQFDLVLLDPPYA----KQEIVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp HTTCCEEEEEECCCGG----GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hcCCCCCEEEECCCCC----chhHHHHHHHHHHhcccCCCCEEEE
Confidence 0136899999986522 12234444444 678999998763
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=122.23 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=87.3
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
.+.....++.+|||||||+|.++..+++.+. +|+++|+|+.|++.|+++++.+++.++++++.++..+
T Consensus 61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 128 (285)
T 4htf_A 61 VLAEMGPQKLRVLDAGGGEGQTAIKMAERGH------------QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQD 128 (285)
T ss_dssp HHHHTCSSCCEEEEETCTTCHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGG
T ss_pred HHHhcCCCCCEEEEeCCcchHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHH
Confidence 3444444578999999999999999999864 9999999999999999999999997799999999988
Q ss_pred cccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 139 LEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.. ..+++||+|++..+-..+ .....++..+.++|+|||.++-
T Consensus 129 ~~~--~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 171 (285)
T 4htf_A 129 VAS--HLETPVDLILFHAVLEWV---ADPRSVLQTLWSVLRPGGVLSL 171 (285)
T ss_dssp TGG--GCSSCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEE
T ss_pred hhh--hcCCCceEEEECchhhcc---cCHHHHHHHHHHHcCCCeEEEE
Confidence 751 123789999985333222 2345677777889999999863
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=117.87 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
.....+.+...+.++.+|||+|||+|.++..+++.+. .+|+++|.|+.|++.|+++++.+++.+ ++++
T Consensus 47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~ 114 (205)
T 3grz_A 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGA-----------KSVLATDISDESMTAAEENAALNGIYD-IALQ 114 (205)
T ss_dssp HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEE
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEE
Confidence 4455666666677889999999999999999998754 699999999999999999999999875 9999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+|..+.. +++||+|+++.... .+..++..+.++|+|||+++-
T Consensus 115 ~~d~~~~~-----~~~fD~i~~~~~~~------~~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 115 KTSLLADV-----DGKFDLIVANILAE------ILLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp ESSTTTTC-----CSCEEEEEEESCHH------HHHHHGGGSGGGEEEEEEEEE
T ss_pred eccccccC-----CCCceEEEECCcHH------HHHHHHHHHHHhcCCCCEEEE
Confidence 99987642 37899999864331 234555666789999998875
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=124.82 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=86.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH---cCCCCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV---NGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~---ngl~~~I~vi~~~~~~l~~ 141 (694)
.++.+|||+|||+|.+++.+++.++ ..+|+++|+++.+++.|+++++. |++.++++++++|+.++..
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~----------~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLE----------KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCT----------TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 4578999999999999999999874 36999999999999999999998 9998899999999987621
Q ss_pred c----cCCCCCccEEEEcccccccc---------------CCChHHHHHHHHHhccCCCCeEE
Q 044245 142 G----VDIDSRADILVSEILDSELL---------------GEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~----~~l~~~~DlIvse~~~~~l~---------------~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
. ...+++||+|++++.....- ....+..++....++|+|||+++
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~ 167 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLS 167 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEE
Confidence 0 01136899999986543210 11235667777788999999876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-11 Score=125.45 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=84.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... .+|+++|+|+.+++.|+++++.+++.++++++.++..+++
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFD-----------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-----------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence 45678999999999999999998833 4999999999999999999999999888999999987652
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|++..+-.. ++......++..+.++|+|||+++-
T Consensus 154 ---~~fD~v~~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 154 ---EPVDRIVSIEAFEH-FGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp ---CCCSEEEEESCGGG-TCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred ---CCcCEEEEeChHHh-cCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 68999998532221 1223456677777789999999874
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=115.00 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.+++.+++..+ ..+|+|+|+++.+++.|+++++.+++ ++++++.++..++... ..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p----------~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~ 108 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNP----------DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDY-FE 108 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT----------TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGT-SC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCC----------CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhh-cC
Confidence 578999999999999999999864 36999999999999999999999998 4899999999886410 01
Q ss_pred CCCccEEEEcccccccc-----CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL-----GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~-----~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|+++....... .....+.++..+.++|+|||.++-
T Consensus 109 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 109 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence 35799999874331100 000235567777789999998754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=121.87 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=81.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc--cc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL--EV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l--~~ 141 (694)
..++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|+++.+.++ .+++++.++..++ ++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~ 124 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI-----------DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL 124 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCE-----------EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCC-----------CeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc
Confidence 45688999999999999999977654 589999999999999999887766 4899999999887 43
Q ss_pred ccCCCCCccEEEEccccc-c-ccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDS-E-LLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~-~-l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ +++||+|+++.+.. . .......+.++..+.++|+|||+++
T Consensus 125 ~---~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~ 167 (236)
T 1zx0_A 125 P---DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp C---TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred C---CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 2 26899999842221 1 1111223355666778999999986
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=119.59 Aligned_cols=106 Identities=10% Similarity=-0.092 Sum_probs=79.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC-----------CCCcEEEE
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG-----------MGRNIKVI 132 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng-----------l~~~I~vi 132 (694)
+.++.+|||+|||+|..+..+++.|. +|+|+|.|+.|++.|+++...+. ...+|+++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~------------~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~ 87 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGY------------HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 87 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCC------------EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCC------------eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence 45789999999999999999999874 99999999999999988754210 12479999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
++|+.+++... .++||+|++...-.. +.+.....++..+.++|+|||++
T Consensus 88 ~~d~~~l~~~~--~~~fD~v~~~~~l~~-l~~~~~~~~l~~~~r~LkpgG~~ 136 (203)
T 1pjz_A 88 CGDFFALTARD--IGHCAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSG 136 (203)
T ss_dssp EECCSSSTHHH--HHSEEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEE
T ss_pred ECccccCCccc--CCCEEEEEECcchhh-CCHHHHHHHHHHHHHHcCCCcEE
Confidence 99998876421 157999998432222 22223445667778899999983
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=110.39 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=80.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ ..+|+++|.|+.+++.|+++++.+++.+++ ++.++..+. ++
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~-~~- 89 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTP----------QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA-FD- 89 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSS----------SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG-GG-
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCC----------CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh-hh-
Confidence 45678999999999999999998853 369999999999999999999999998789 888887542 21
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||+|++.... .. ..++..+.++|+|||+++-
T Consensus 90 ~~~~~~D~i~~~~~~----~~---~~~l~~~~~~L~~gG~l~~ 125 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGL----TA---PGVFAAAWKRLPVGGRLVA 125 (178)
T ss_dssp GCCSCCSEEEECC-T----TC---TTHHHHHHHTCCTTCEEEE
T ss_pred ccCCCCCEEEECCcc----cH---HHHHHHHHHhcCCCCEEEE
Confidence 222689999984322 21 4455566679999999873
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-11 Score=119.55 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=84.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+++|.|+.|++.|+++++.++++ +++++.+|..+++++
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~- 100 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVK------------KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFT- 100 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS------------EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSC-
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCC------------EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCC-
Confidence 35688999999999999999998864 9999999999999999999998886 799999999887643
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.++ ...+.++..+.++|+|||+++-
T Consensus 101 --~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 101 --DERFHIVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp --TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCCEEEEEEhhhhHhc---CCHHHHHHHHHHHcCCCCEEEE
Confidence 2689999986332222 2245666777789999998864
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-11 Score=120.85 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 52 RNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 52 r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
-...+.+++.+.+.++.+|||+|||+|.+++.+++.|+ +|+++|+++.+++.|+++++.|++. +++
T Consensus 106 tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~------------~v~gvDi~~~~v~~a~~n~~~~~~~--v~~ 171 (254)
T 2nxc_A 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG------------KALGVDIDPMVLPQAEANAKRNGVR--PRF 171 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCGGGHHHHHHHHHHTTCC--CEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC------------eEEEEECCHHHHHHHHHHHHHcCCc--EEE
Confidence 35566777877778899999999999999999999864 9999999999999999999999986 899
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.++..+. ++ .++||+|+++.+.. .+..+.....++|+|||+++-
T Consensus 172 ~~~d~~~~-~~---~~~fD~Vv~n~~~~------~~~~~l~~~~~~LkpgG~lil 216 (254)
T 2nxc_A 172 LEGSLEAA-LP---FGPFDLLVANLYAE------LHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp EESCHHHH-GG---GCCEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred EECChhhc-Cc---CCCCCEEEECCcHH------HHHHHHHHHHHHcCCCCEEEE
Confidence 99887763 11 25899999975432 245566667789999998875
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-11 Score=118.65 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=87.4
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEec
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----GRNIKVINK 134 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----~~~I~vi~~ 134 (694)
.+...+.++.+|||||||+|.++..+++.+. +|+++|.++.+++.|++++..+++ .++++++.+
T Consensus 23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 3sm3_A 23 IIHNYLQEDDEILDIGCGSGKISLELASKGY------------SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90 (235)
T ss_dssp THHHHCCTTCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEEC
T ss_pred HHHHhCCCCCeEEEECCCCCHHHHHHHhCCC------------eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEe
Confidence 3444567789999999999999999999864 999999999999999999888776 347999999
Q ss_pred cccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+..++..+ .++||+|++...-..+........++..+.++|+|||+++-
T Consensus 91 d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 139 (235)
T 3sm3_A 91 NASSLSFH---DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139 (235)
T ss_dssp CTTSCCSC---TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccCCC---CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99887642 36899999854333322211233667777789999998864
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-11 Score=117.63 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 044245 50 SYRNRAYRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR 127 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~ 127 (694)
....+.+.+.+...+ .++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++...++
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~--- 97 (216)
T 3ofk_A 33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK------------RLTVIDVMPRAIGRACQRTKRWS--- 97 (216)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE------------EEEEEESCHHHHHHHHHHTTTCS---
T ss_pred HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHhcccCC---
Confidence 333345555565443 3457999999999999999998874 89999999999999998876543
Q ss_pred cEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 128 NIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++++.++..++. .+++||+|++...-.++.....+..++..+.++|+|||.++
T Consensus 98 ~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 98 HISWAATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp SEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 7999999998875 23789999986433333221233455667778999999887
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=122.41 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=79.8
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.|......+.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++ . .+|+++.++.+
T Consensus 31 ~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~------------~v~gvD~s~~ml~~a~~------~-~~v~~~~~~~e 91 (257)
T 4hg2_A 31 RWLGEVAPARGDALDCGCGSGQASLGLAEFFE------------RVHAVDPGEAQIRQALR------H-PRVTYAVAPAE 91 (257)
T ss_dssp HHHHHHSSCSSEEEEESCTTTTTHHHHHTTCS------------EEEEEESCHHHHHTCCC------C-TTEEEEECCTT
T ss_pred HHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCC------------EEEEEeCcHHhhhhhhh------c-CCceeehhhhh
Confidence 44555556678999999999999999998875 89999999999987753 2 37999999999
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++++. +.||+|++... ++---.+.+...+.|+|+|||+++
T Consensus 92 ~~~~~~---~sfD~v~~~~~----~h~~~~~~~~~e~~rvLkpgG~l~ 132 (257)
T 4hg2_A 92 DTGLPP---ASVDVAIAAQA----MHWFDLDRFWAELRRVARPGAVFA 132 (257)
T ss_dssp CCCCCS---SCEEEEEECSC----CTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhcccC---CcccEEEEeee----hhHhhHHHHHHHHHHHcCCCCEEE
Confidence 987643 68999998432 222225666777788999999885
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=119.28 Aligned_cols=105 Identities=18% Similarity=0.106 Sum_probs=86.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++..+ .+|+++|+|+.|++.|+++++..|+.++++++.++..+++++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 147 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFG-----------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE-- 147 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-----------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-----------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC--
Confidence 5678999999999999999998843 499999999999999999999999988999999999887643
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.++ . ....++..+.++|+|||+++-
T Consensus 148 -~~~fD~v~~~~~l~~~--~-~~~~~l~~~~~~LkpgG~l~~ 185 (297)
T 2o57_A 148 -DNSYDFIWSQDAFLHS--P-DKLKVFQECARVLKPRGVMAI 185 (297)
T ss_dssp -TTCEEEEEEESCGGGC--S-CHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCEeEEEecchhhhc--C-CHHHHHHHHHHHcCCCeEEEE
Confidence 2689999985322222 2 256677777889999999874
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=120.65 Aligned_cols=116 Identities=11% Similarity=-0.001 Sum_probs=86.0
Q ss_pred HHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 57 RLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 57 ~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
.+++.+. ..+|.+|||||||+|..+..+++..+ .+|++||+|+.|++.|+++.+..+. +++++.++
T Consensus 50 m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~-----------~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~ 116 (236)
T 3orh_A 50 MHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI-----------DEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGL 116 (236)
T ss_dssp HHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCE-----------EEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESC
T ss_pred HHHHHHhhccCCCeEEEECCCccHHHHHHHHhCC-----------cEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeeh
Confidence 3344433 35689999999999999999888754 5899999999999999998887764 78999999
Q ss_pred ccccccccCCCCCccEEEEccccccccCCC--hHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEG--LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~--~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.++... ...+.||.|+.+.+........ ..+.++..+.|+|+|||+++.
T Consensus 117 a~~~~~~-~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 117 WEDVAPT-LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp HHHHGGG-SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred HHhhccc-ccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 8776421 1236899998776443222222 345666777789999999864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-11 Score=118.89 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
...+.+.+.+.+.++.+|||||||+|.++..+++. . +|+++|.|+.|++.|+++...++ .+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~------------~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~ 84 (243)
T 3d2l_A 20 YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH-Y------------EVTGVDLSEEMLEIAQEKAMETN--RHVDFW 84 (243)
T ss_dssp HHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-S------------EEEEEESCHHHHHHHHHHHHHTT--CCCEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-C------------eEEEEECCHHHHHHHHHhhhhcC--CceEEE
Confidence 34566677777778899999999999999988876 4 89999999999999999998777 379999
Q ss_pred eccccccccccCCCCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 133 NKRSDELEVGVDIDSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++..++.. +++||+|++.. .-.++........++..+.++|+|||+++-
T Consensus 85 ~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 85 VQDMRELEL----PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp ECCGGGCCC----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EcChhhcCC----CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999887653 36899999842 111221222345566677789999998863
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=117.53 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=83.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.++++.. +..+|+++|.++.+++.|+++++.+++.++|+++.+++.+... .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~--~ 125 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQ---------PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP--Q 125 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSC---------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG--G
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC---------CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH--H
Confidence 3578999999999999999998642 1369999999999999999999999998899999999866421 1
Q ss_pred CC-----CCccEEEEccccccccCCChHH--HHHHHHHhccCCCCeEEcCceE
Q 044245 145 ID-----SRADILVSEILDSELLGEGLIP--TLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 145 l~-----~~~DlIvse~~~~~l~~e~~l~--~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
+. ++||+|+++.... ...+ .+.... ++|+|||+++-+...
T Consensus 126 ~~~~~~~~~fD~V~~d~~~~-----~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 126 LKKKYDVDTLDMVFLDHWKD-----RYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp TTTTSCCCCCSEEEECSCGG-----GHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHHhcCCCceEEEEEcCCcc-----cchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 22 5899999863221 1122 233344 799999999877655
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=117.00 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=82.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|.++..+|+..+ +.++|+|+|+++.|++.++++++.. .++..+.++........
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG---------~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~ 142 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIG---------PRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR 142 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC---------TTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhC---------CCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc
Confidence 67899999999999999999999865 3589999999999999998876543 37888988887755333
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+.+|+|++++. .......++..+.++|+|||+++
T Consensus 143 ~~~~~vDvVf~d~~-----~~~~~~~~l~~~~r~LKpGG~lv 179 (233)
T 4df3_A 143 HLVEGVDGLYADVA-----QPEQAAIVVRNARFFLRDGGYML 179 (233)
T ss_dssp TTCCCEEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceEEEEEEecc-----CChhHHHHHHHHHHhccCCCEEE
Confidence 45578999987532 22334455666677999999886
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-11 Score=118.02 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=83.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEeccccccccccCC-
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGVDI- 145 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~~l- 145 (694)
.+|||||||+|..++.++++.+ +.++|+++|.|+.+++.|+++++.+|+. ++|+++.++..++.. .+
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~--~~~ 126 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLA---------DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS--RLA 126 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSC---------TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG--GSC
T ss_pred CCEEEEcCCchHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH--Hhc
Confidence 4999999999999999999753 2369999999999999999999999998 899999999877532 22
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
+++||+|+++.. ....+.+.....++|+|||+++-+..
T Consensus 127 ~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 127 NDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp TTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred CCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 478999998531 12244455566679999999986543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=120.51 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=87.8
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
..+.++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|+++...+++..+++++.++..+++.
T Consensus 60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 128 (298)
T 1ri5_A 60 LYTKRGDSVLDLGCGKGGDLLKYERAGI-----------GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128 (298)
T ss_dssp HHCCTTCEEEEETCTTTTTHHHHHHHTC-----------SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC
T ss_pred HhCCCCCeEEEECCCCCHHHHHHHHCCC-----------CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc
Confidence 3467789999999999999999888864 59999999999999999999988887789999999988754
Q ss_pred ccCCCCCccEEEEccccccc-cCCChHHHHHHHHHhccCCCCeEEc
Q 044245 142 GVDIDSRADILVSEILDSEL-LGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l-~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
. .+++||+|++...-.++ ........++..+.++|+|||.++-
T Consensus 129 ~--~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 172 (298)
T 1ri5_A 129 D--LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172 (298)
T ss_dssp C--CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred C--CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 23689999985322211 1122345667777889999998873
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=114.77 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=86.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. +..+|+++|.|+.+++.|++++..++++ +++++.++..++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~- 103 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVG---------EKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLP- 103 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHT---------TTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSC-
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhC---------CCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCC-
Confidence 45688999999999999999999973 1359999999999999999999999987 899999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++...-..+ .....++..+.++|+|||.++-
T Consensus 104 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i 141 (219)
T 3dh0_A 104 --DNTVDFIFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAI 141 (219)
T ss_dssp --SSCEEEEEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCCeeEEEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEE
Confidence 2689999985333222 2245666677789999998874
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=119.47 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.+. +|+++|.|+.+++.|++++..+++ +++++.+|..++..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~------------~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~---- 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY------------DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI---- 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC----
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc----
Confidence 689999999999999999999864 999999999999999999999988 79999999988653
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+..++ .......++..+.++|+|||.++
T Consensus 182 ~~~fD~i~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~ 220 (286)
T 3m70_A 182 QENYDFIVSTVVFMFL-NRERVPSIIKNMKEHTNVGGYNL 220 (286)
T ss_dssp CSCEEEEEECSSGGGS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred cCCccEEEEccchhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 4789999996544332 33456677777788999999865
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=118.02 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=84.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+|+.++|+++.+++.+......
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~ 132 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELP---------ADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG 132 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSC---------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC
Confidence 4678999999999999999998743 1369999999999999999999999998899999999877421111
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..++||+|+++.. ....+.++....++|+|||+++-+
T Consensus 133 ~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 133 ECPAFDLIFIDAD------KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp SCCCCSEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCCeEEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 1248999998531 122445556666799999988753
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-11 Score=122.67 Aligned_cols=124 Identities=17% Similarity=0.102 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-
Q 044245 50 SYRNRAYRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG- 126 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~- 126 (694)
..+.+.|.+.+...+ .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+..
T Consensus 39 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~l~~a~~~~~~~~~~~ 106 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF------------SVTSVDASDKMLKYALKERWNRRKEP 106 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTTSH
T ss_pred cchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC------------eEEEEECCHHHHHHHHHhhhhccccc
Confidence 334566666666543 4578999999999999999999874 9999999999999999887554432
Q ss_pred --CcEEEEeccccccccccCCCCCccEEEEc--cccccccC----CChHHHHHHHHHhccCCCCeEEc
Q 044245 127 --RNIKVINKRSDELEVGVDIDSRADILVSE--ILDSELLG----EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 --~~I~vi~~~~~~l~~~~~l~~~~DlIvse--~~~~~l~~----e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++.+..++..++...-..+++||+|++. .+.+ +.. ......++..+.++|+|||+++-
T Consensus 107 ~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 107 AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH-LPDSKGDQSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp HHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGG-SCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccceeeEeecChhhCccccccCCCeEEEEEcChHHhh-cCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 36888999988765100113689999984 2322 211 23366677777889999999874
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-10 Score=116.34 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=85.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ .+|+++|.|+.+++.|+++++..++.++++++.++..+++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~-----------~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD-----------VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-----------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 45678999999999999999995544 4999999999999999999999898889999999987653
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||+|++..+-.++ .......++..+.++|+|||+++-.
T Consensus 128 ---~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 167 (287)
T 1kpg_A 128 ---EPVDRIVSIGAFEHF-GHERYDAFFSLAHRLLPADGVMLLH 167 (287)
T ss_dssp ---CCCSEEEEESCGGGT-CTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ---CCeeEEEEeCchhhc-ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 689999985322222 2234566677777899999998754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=115.49 Aligned_cols=114 Identities=9% Similarity=0.043 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
.+.+...+...+.+..+|||||||+|.+++.++...+ ..+|+|+|+|+.|++.+++++..+|..+++++
T Consensus 36 ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p----------~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~- 104 (200)
T 3fzg_A 36 LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE----------KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF- 104 (200)
T ss_dssp HHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC----------CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE-
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC----------CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE-
Confidence 3455666666677789999999999999999988754 35999999999999999999999999878887
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+..+. ..+++||+|++.-+-+.+ . .....+. .+...|+|||.+|
T Consensus 105 -~d~~~~----~~~~~~DvVLa~k~LHlL-~-~~~~al~-~v~~~L~pggvfI 149 (200)
T 3fzg_A 105 -LNKESD----VYKGTYDVVFLLKMLPVL-K-QQDVNIL-DFLQLFHTQNFVI 149 (200)
T ss_dssp -ECCHHH----HTTSEEEEEEEETCHHHH-H-HTTCCHH-HHHHTCEEEEEEE
T ss_pred -eccccc----CCCCCcChhhHhhHHHhh-h-hhHHHHH-HHHHHhCCCCEEE
Confidence 343322 134789999985433333 1 1111122 3345789999876
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=123.44 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=84.6
Q ss_pred HHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-------HHcCCC-
Q 044245 56 YRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-------HVNGMG- 126 (694)
Q Consensus 56 y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-------~~ngl~- 126 (694)
+.+.+..+ +.++.+|||||||+|.+++.+|+..+ ..+|+|||+++.|++.|++++ +.+|+.
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g----------~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~ 231 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN----------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 231 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44455543 56789999999999999999987643 257999999999999998764 456763
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++|+++++|+.++++... -..+|+|+++.+ ++.+.....+. .+.+.|+|||+++
T Consensus 232 ~rVefi~GD~~~lp~~d~-~~~aDVVf~Nn~---~F~pdl~~aL~-Ei~RvLKPGGrIV 285 (438)
T 3uwp_A 232 AEYTLERGDFLSEEWRER-IANTSVIFVNNF---AFGPEVDHQLK-ERFANMKEGGRIV 285 (438)
T ss_dssp CEEEEEECCTTSHHHHHH-HHTCSEEEECCT---TCCHHHHHHHH-HHHTTSCTTCEEE
T ss_pred CCeEEEECcccCCccccc-cCCccEEEEccc---ccCchHHHHHH-HHHHcCCCCcEEE
Confidence 689999999998764211 136999998743 22333334444 4457999999987
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=117.59 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=84.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+++|.++.|++.|+++++.++++ +++++.++..+++.+
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~- 84 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQ------------ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFP- 84 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS------------EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSC-
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCC------------EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCC-
Confidence 56789999999999999999998864 8999999999999999999998886 799999999887642
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.++ .....++..+.++|+|||.++-
T Consensus 85 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 122 (239)
T 1xxl_A 85 --DDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLL 122 (239)
T ss_dssp --TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCcEEEEEECCchhhc---cCHHHHHHHHHHHcCCCcEEEE
Confidence 3689999986322222 2355667777789999998864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=117.11 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=85.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.+++..+ ..+|+++|.++.+++.|+++++.+++.++|+++.++..+... ..
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 138 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISD----------DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE-NV 138 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCT----------TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH-HH
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-hh
Confidence 4678999999999999999998543 369999999999999999999999998899999999877531 01
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++++||+|+++.. ....+.++....++|+|||+++-
T Consensus 139 ~~~~fD~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 139 NDKVYDMIFIDAA------KAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TTSCEEEEEEETT------SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCCccEEEEcCc------HHHHHHHHHHHHHhcCCCeEEEE
Confidence 2478999997521 22355666777789999999876
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=113.38 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=77.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ .++|+|+|.|+.|++.+.+.++.. .++.++.+|..+.....
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~----------~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~ 121 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD----------EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS 121 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT----------TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC----------CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc
Confidence 45788999999999999999998863 259999999999987777666543 37888888887642101
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
...++||+|+++.. .......++..+.++|+|||+++-.
T Consensus 122 ~~~~~fD~V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 122 GIVEKVDLIYQDIA-----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp TTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccceeEEEEecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 12368999998631 2233444466677899999988743
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=121.10 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=84.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~~ 143 (694)
.++.+|||+|||+|.+++.+++.|+ +|+++|.|+.|++.|+++++.|++.+ +++++++|+.++....
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga------------~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~ 219 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA------------EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQRE 219 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC------------EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHH
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHH
Confidence 4578999999999999999999864 99999999999999999999999976 5999999987753100
Q ss_pred -CCCCCccEEEEccccccccCC-------ChHHHHHHHHHhccCCCCeEE
Q 044245 144 -DIDSRADILVSEILDSELLGE-------GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~l~~e-------~~l~~l~~~~~~~L~p~G~ii 185 (694)
...++||+|++++........ .....++....++|+|||.++
T Consensus 220 ~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ll 269 (332)
T 2igt_A 220 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 269 (332)
T ss_dssp HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred HhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEE
Confidence 003589999998764332111 123455666667999999854
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=113.11 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=81.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++ +|||||||+|.++..+++.+. +|+++|.|+.+++.|+++...++. +++++.++..++..+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~- 91 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASLGY------------EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIV- 91 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTTTC------------EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCC-
T ss_pred CCCC-CEEEECCCCCHhHHHHHhCCC------------eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCC-
Confidence 4567 999999999999999998764 999999999999999999988876 799999998887532
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++.. ..+.......++..+.++|+|||.++-
T Consensus 92 --~~~fD~v~~~~---~~~~~~~~~~~l~~~~~~L~pgG~l~~ 129 (202)
T 2kw5_A 92 --ADAWEGIVSIF---CHLPSSLRQQLYPKVYQGLKPGGVFIL 129 (202)
T ss_dssp --TTTCSEEEEEC---CCCCHHHHHHHHHHHHTTCCSSEEEEE
T ss_pred --cCCccEEEEEh---hcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 36899999842 122222455677777889999998864
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=116.04 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=82.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.+. +|+++|.|+.|++.|++++..++. +++++.+++.++..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~------------~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~--- 102 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY------------EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF--- 102 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC---
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc---
Confidence 4568999999999999999999864 899999999999999999988876 69999999988653
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...............++..+.++|+|||.++-
T Consensus 103 -~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 103 -KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp -CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 36899999742111222223355666777789999999874
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-11 Score=125.90 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=84.8
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEeccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG--RNIKVINKRS 136 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~--~~I~vi~~~~ 136 (694)
.+.....++.+|||||||+|.++..+++.+. +|+++|+|+.|++.|++++..+++. .+|+++.+|+
T Consensus 75 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~------------~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 142 (299)
T 3g2m_A 75 FATRTGPVSGPVLELAAGMGRLTFPFLDLGW------------EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM 142 (299)
T ss_dssp HHHHHCCCCSCEEEETCTTTTTHHHHHTTTC------------CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT
T ss_pred HHHhhCCCCCcEEEEeccCCHHHHHHHHcCC------------eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch
Confidence 3333334456999999999999999998864 8999999999999999999877642 5899999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++. +++||+|++.......+.......++..+.++|+|||+++-
T Consensus 143 ~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 188 (299)
T 3g2m_A 143 SAFAL----DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188 (299)
T ss_dssp TBCCC----SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCc----CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 98753 47899888631111122222345677777889999998864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=118.96 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=89.2
Q ss_pred HHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEec
Q 044245 57 RLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINK 134 (694)
Q Consensus 57 ~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~ 134 (694)
.+.|... ..++.+|||||||+|.++..+++... +..+|+|+|+|+.|++.|+++++.+ +...+++++.+
T Consensus 26 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 96 (299)
T 3g5t_A 26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQELK---------PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS 96 (299)
T ss_dssp HHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSS---------CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCC---------CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEc
Confidence 3444443 34689999999999999999997541 1369999999999999999999887 55679999999
Q ss_pred ccccccccc--C-CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 135 RSDELEVGV--D-IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 135 ~~~~l~~~~--~-l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++.++.... . ..++||+|++...-+.+ ....++..+.++|+|||.++-
T Consensus 97 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 97 SSDDFKFLGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CTTCCGGGCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHhCCccccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 999876422 0 12689999986443333 356677777889999998875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-10 Score=116.76 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++. + ..+|+|+|+|+.+++.|+++++.+++.++++++++|+.+..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~----------~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----- 186 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S----------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----- 186 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S----------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-----
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C----------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-----
Confidence 5689999999999999999998 3 25999999999999999999999999878999999988732
Q ss_pred CCCc---cEEEEccccccc--------cCCChHH--------HHHHHHH-hccCCCCeEE
Q 044245 146 DSRA---DILVSEILDSEL--------LGEGLIP--------TLQHAHD-RLLVENPLTV 185 (694)
Q Consensus 146 ~~~~---DlIvse~~~~~l--------~~e~~l~--------~l~~~~~-~~L~p~G~ii 185 (694)
+++| |+|++++..... .++.... .+...+. +.|+|||.++
T Consensus 187 ~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~ 246 (284)
T 1nv8_A 187 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVL 246 (284)
T ss_dssp GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEE
Confidence 2468 999998644311 1222110 3344444 6899999887
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=118.42 Aligned_cols=106 Identities=11% Similarity=-0.074 Sum_probs=80.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH----------cC------CCCc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV----------NG------MGRN 128 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~----------ng------l~~~ 128 (694)
.++.+|||+|||+|..+..+++.|. +|+|+|.|+.|++.|++.... ++ ...+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~------------~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH------------TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS 134 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC------------EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC------------eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence 4688999999999999999999875 899999999999999765431 11 1248
Q ss_pred EEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 129 IKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 129 I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
|+++++|+.+++... .++||+|++...-.. +.....+.++..+.++|+|||+++
T Consensus 135 i~~~~~D~~~l~~~~--~~~FD~V~~~~~l~~-l~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 135 ISLYCCSIFDLPRAN--IGKFDRIWDRGALVA-INPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp EEEEESCTTTGGGGC--CCCEEEEEESSSTTT-SCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred eEEEECccccCCccc--CCCEEEEEEhhhhhh-CCHHHHHHHHHHHHHHcCCCeEEE
Confidence 999999999886421 268999997532222 233445567777788999999975
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=120.08 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=82.9
Q ss_pred hhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 62 KMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 62 ~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
..+.++.+|||+|||+|.+++.+++.++ ..+|+|+|.|+.+++.|+++++.|++. +++++.+|..++.
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~----------~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~- 182 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK----------PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVE- 182 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC----------CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCC-
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC----------CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcC-
Confidence 3467789999999999999999999863 369999999999999999999999996 6899999998862
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
. .++||+|++++.. + ...+.....+.|+|||+++
T Consensus 183 -~--~~~~D~Vi~d~p~------~-~~~~l~~~~~~LkpgG~l~ 216 (272)
T 3a27_A 183 -L--KDVADRVIMGYVH------K-THKFLDKTFEFLKDRGVIH 216 (272)
T ss_dssp -C--TTCEEEEEECCCS------S-GGGGHHHHHHHEEEEEEEE
T ss_pred -c--cCCceEEEECCcc------c-HHHHHHHHHHHcCCCCEEE
Confidence 1 4689999997653 1 2233444456899999876
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=112.04 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.+++.+|+..+ ..+|+|+|+|+.|++.|+++++.+++. +|+++.+|+.++... -.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p----------~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~-~~ 105 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNP----------DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDV-FE 105 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT----------TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHH-CC
T ss_pred CCceEEEEecCCCHHHHHHHHHCC----------CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhh-cC
Confidence 578999999999999999999864 369999999999999999999999985 799999999876410 01
Q ss_pred CCCccEEEEcccccccc-----CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL-----GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~-----~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++.+|.|++...+.... ..-..+.++..+.++|+|||.++-
T Consensus 106 ~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 106 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred cCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence 25799988743221110 001135667777789999999863
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-10 Score=113.39 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=79.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|..+..+|+... +.++|+|+|.++.|++.+.+.++.. .+|.++.+|.+......
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~---------~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~ 141 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIE---------LNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK 141 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHT---------TTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhC---------CCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh
Confidence 56789999999999999999998754 2479999999999986665555443 37999999988654222
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.++||+|+++... ......+....+++|+|||+++-
T Consensus 142 ~~~~~~D~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvi 179 (232)
T 3id6_C 142 SVVENVDVLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLL 179 (232)
T ss_dssp TTCCCEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccceEEEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEE
Confidence 345789999987322 33344455566679999999874
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.4e-11 Score=115.88 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK 134 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~ 134 (694)
.+.+.+.+.+.++.+|||||||+|.++..+++.+. .+|+++|.|+.+++.|+++... . .+++++.+
T Consensus 31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~-----------~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~ 96 (215)
T 2pxx_A 31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGGF-----------PNVTSVDYSSVVVAAMQACYAH--V-PQLRWETM 96 (215)
T ss_dssp HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTC-----------CCEEEEESCHHHHHHHHHHTTT--C-TTCEEEEC
T ss_pred HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCC-----------CcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEc
Confidence 35667777778889999999999999999999875 4899999999999999988753 2 47999999
Q ss_pred cccccccccCCCCCccEEEEccccccccC------------CChHHHHHHHHHhccCCCCeEE
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLG------------EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~------------e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+..++..+ +++||+|++......+.. ......++..+.++|+|||+++
T Consensus 97 d~~~~~~~---~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 156 (215)
T 2pxx_A 97 DVRKLDFP---SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156 (215)
T ss_dssp CTTSCCSC---SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred chhcCCCC---CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEE
Confidence 98887532 368999998644333221 1123456666778999999876
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=117.24 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=86.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ ..+|+++|.++.+++.|++++..++++ +++++.++..++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~- 102 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNP----------DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFE- 102 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT----------TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSC-
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCC-
Confidence 35789999999999999999999864 369999999999999999999999986 799999999887643
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+-..+ ...+.++..+.++|+|||.++
T Consensus 103 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 139 (276)
T 3mgg_A 103 --DSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTIT 139 (276)
T ss_dssp --TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred --CCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEE
Confidence 3689999986433222 224566777778999999886
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=119.01 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=83.7
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK 134 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~ 134 (694)
...+.+...+.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++.. +++++.+
T Consensus 39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~~~~a~~~~~------~~~~~~~ 100 (263)
T 3pfg_A 39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG------------TVEGLELSADMLAIARRRNP------DAVLHHG 100 (263)
T ss_dssp HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS------------EEEEEESCHHHHHHHHHHCT------TSEEEEC
T ss_pred HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC------------eEEEEECCHHHHHHHHhhCC------CCEEEEC
Confidence 33444555566779999999999999999998864 89999999999999987632 6899999
Q ss_pred cccccccccCCCCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 135 RSDELEVGVDIDSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
|+.++.. +++||+|++.. .-.++........++..+.++|+|||.++-.
T Consensus 101 d~~~~~~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 101 DMRDFSL----GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CTTTCCC----SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred ChHHCCc----cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9988753 47899999852 2212211123445666777899999998864
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=115.13 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++...++. +++++.++..++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~---- 98 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK------------NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI---- 98 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS------------EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC----
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC------------cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc----
Confidence 678999999999999999998864 899999999999999999988776 79999999888653
Q ss_pred CCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++.. .-.++........++..+.++|+|||+++-
T Consensus 99 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 26899999853 222221223455677777889999998873
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=110.41 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.+. +|+++|.|+.+++.|+++++.++++ +++++.++..++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--- 94 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY------------DVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF--- 94 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC---
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC------------eEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC---
Confidence 3578999999999999999998864 9999999999999999999988885 69999999888653
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++.....++ .......++..+.++|+|||.++
T Consensus 95 -~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~~gG~l~ 133 (199)
T 2xvm_A 95 -DRQYDFILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNL 133 (199)
T ss_dssp -CCCEEEEEEESCGGGS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred -CCCceEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCeEEE
Confidence 4789999986433322 22345667777788999999865
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=114.84 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=83.4
Q ss_pred HHHhhcc--CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 59 AIDKMVT--KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 59 ai~~~~~--~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+.+.+. ++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|+++.. ..+++++.++.
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~ 99 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-----------KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAI 99 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCG
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcch
Confidence 3444433 678999999999999999999875 499999999999999988754 35899999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++.+ .++||+|++...-..+ .....++..+.++|+|||.++-
T Consensus 100 ~~~~~~---~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 143 (253)
T 3g5l_A 100 EDIAIE---PDAYNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIF 143 (253)
T ss_dssp GGCCCC---TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhCCCC---CCCeEEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEE
Confidence 887642 3689999985433222 2356677777789999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.9e-11 Score=113.94 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=81.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+.+...+.++.+|||||||+|.++..+++.+. +|+++|.++.+++.|+++. .+++++.++.
T Consensus 37 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~ 98 (195)
T 3cgg_A 37 ARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH------------DVLGTDLDPILIDYAKQDF------PEARWVVGDL 98 (195)
T ss_dssp HHHHHHHSCTTCEEEEETCTTTHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHC------TTSEEEECCT
T ss_pred HHHHHHhccCCCeEEEECCCCCHHHHHHHHCCC------------cEEEEcCCHHHHHHHHHhC------CCCcEEEccc
Confidence 345556677889999999999999999998864 8999999999999998764 2588999998
Q ss_pred cccccccCCCCCccEEEEc-cccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVGVDIDSRADILVSE-ILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse-~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++..+ +++||+|++. .+-. .+.......++..+.++|+|||.++-
T Consensus 99 ~~~~~~---~~~~D~i~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 99 SVDQIS---ETDFDLIVSAGNVMG-FLAEDGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp TTSCCC---CCCEEEEEECCCCGG-GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCC---CCceeEEEECCcHHh-hcChHHHHHHHHHHHHHhCCCCEEEE
Confidence 876532 3689999985 2221 12222345666777789999998873
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=123.03 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhc----cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 044245 53 NRAYRLAIDKMV----TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN 128 (694)
Q Consensus 53 ~~~y~~ai~~~~----~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~ 128 (694)
.+...+.+.+.+ .++.+|||+|||+|.+++.+++.+. +|+++|+|+.+++.|+++++.|++.
T Consensus 216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~------------~V~gvDis~~al~~A~~n~~~~~~~-- 281 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA------------EVVGVEDDLASVLSLQKGLEANALK-- 281 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC------------EEEEEESBHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 344455554433 3678999999999999999999864 9999999999999999999999974
Q ss_pred EEEEeccccccccccCCCCCccEEEEcccccccc--CCChHHHHHHHHHhccCCCCeEEc
Q 044245 129 IKVINKRSDELEVGVDIDSRADILVSEILDSELL--GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 129 I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~--~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++++.+|..+...+ .++||+|++++...... .......++....++|+|||+++-
T Consensus 282 v~~~~~D~~~~~~~---~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 282 AQALHSDVDEALTE---EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp CEEEECSTTTTSCT---TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEcchhhcccc---CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 89999998876532 26899999987554321 123455677777789999998863
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.10 E-value=7e-10 Score=114.06 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=86.4
Q ss_pred HHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH------HHHHHHHHHHHcCCCCc
Q 044245 56 YRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP------MVKLMKKVLHVNGMGRN 128 (694)
Q Consensus 56 y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~------~~~~A~~~~~~ngl~~~ 128 (694)
+.+.+... +.++.+|||||||+|.++..+++.++ +..+|+++|.|+. |++.|+++++.+++.++
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g---------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~ 102 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVG---------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR 102 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHC---------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGG
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhC---------CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCc
Confidence 34444443 56789999999999999999999852 1359999999997 99999999999988779
Q ss_pred EEEEecc-c--cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 129 IKVINKR-S--DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 129 I~vi~~~-~--~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
|+++.++ . ..+++ .+++||+|++..+-.++ .....+....+++++|||.++-
T Consensus 103 v~~~~~d~~~~~~~~~---~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~l~~~gG~l~~ 157 (275)
T 3bkx_A 103 LTVHFNTNLSDDLGPI---ADQHFDRVVLAHSLWYF---ASANALALLFKNMAAVCDHVDV 157 (275)
T ss_dssp EEEECSCCTTTCCGGG---TTCCCSEEEEESCGGGS---SCHHHHHHHHHHHTTTCSEEEE
T ss_pred eEEEECChhhhccCCC---CCCCEEEEEEccchhhC---CCHHHHHHHHHHHhCCCCEEEE
Confidence 9999998 3 33322 13689999985433222 1234577777888888998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=115.44 Aligned_cols=109 Identities=16% Similarity=0.063 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.+++.+|+..+ ..+|+|+|+++.|++.|+++++.++++ +|+++.+|..++......
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p----------~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~ 102 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRP----------EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIP 102 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCT----------TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSC
T ss_pred CCCeEEEEeeeChHHHHHHHHHCC----------CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcC
Confidence 568999999999999999999875 468999999999999999999999987 699999998875210011
Q ss_pred CCCccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.+|.|++.......-. .-..+.++..+.++|+|||+++
T Consensus 103 ~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~ 147 (218)
T 3dxy_A 103 DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFH 147 (218)
T ss_dssp TTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEE
T ss_pred CCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEE
Confidence 368999987522211100 0012346777778999999875
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=116.32 Aligned_cols=113 Identities=10% Similarity=0.049 Sum_probs=86.0
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+.+.....++.+|||||||+|.++..+++.+ .+|+++|+|+.+++.|+++...++...+++++.+|+
T Consensus 57 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 124 (235)
T 3lcc_A 57 VHLVDTSSLPLGRALVPGCGGGHDVVAMASPE------------RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV 124 (235)
T ss_dssp HHHHHTTCSCCEEEEEETCTTCHHHHHHCBTT------------EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCT
T ss_pred HHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCC------------CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECch
Confidence 33344333345699999999999999988765 489999999999999999988766667899999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++.. .++||+|++..+-..+ .......++..+.++|+|||.++-
T Consensus 125 ~~~~~----~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 125 FTWRP----TELFDLIFDYVFFCAI-EPEMRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp TTCCC----SSCEEEEEEESSTTTS-CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCC----CCCeeEEEEChhhhcC-CHHHHHHHHHHHHHHCCCCcEEEE
Confidence 88652 2589999985332222 223456677777889999999863
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=124.36 Aligned_cols=113 Identities=15% Similarity=0.001 Sum_probs=86.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEeccccccccc-
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVG- 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~- 142 (694)
.++.+|||+|||+|.+++.+|+.++ .+|+++|.|+.|++.|+++++.||+.+ +++++.+|+.+....
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-----------~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~ 279 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-----------MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYA 279 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-----------SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence 5689999999999999999998765 689999999999999999999999976 899999998764210
Q ss_pred cCCCCCccEEEEcccccc---ccCCChHH---HHHHHHHhccCCCCeEEcCc
Q 044245 143 VDIDSRADILVSEILDSE---LLGEGLIP---TLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~---l~~e~~l~---~l~~~~~~~L~p~G~iiP~~ 188 (694)
....++||+|++++.... ......+. .+.....++|+|||+++-..
T Consensus 280 ~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 280 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 001248999999876532 11223333 34555567999999887543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-10 Score=112.95 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=83.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--c
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV--G 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~--~ 142 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+|+.++|+++.++..+... .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 127 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLS---------SGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIE 127 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC---------SSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred hCCCEEEEecCCccHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 4678999999999999999998853 1359999999999999999999999998889999999876421 0
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
....++||+|+++.. ....+.++....++|+|||.++-+
T Consensus 128 ~~~~~~fD~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 128 NEKYEPFDFIFIDAD------KQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp HTTCCCCSEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred hcCCCCcCEEEEcCC------cHHHHHHHHHHHHhcCCCcEEEEe
Confidence 111157999998532 123455666667799999988753
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-10 Score=118.42 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++..|||+|||+|.+++.+++.+. +..+|+|+|+|+.|++.|+++++.+|++ +|+++++|+.++..+.
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~---------~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLG---------PTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFF 270 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHC---------TTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhC---------CCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcccc
Confidence 45678999999999999999999872 1358999999999999999999999998 9999999999876422
Q ss_pred CCCCCccEEEEccccccccCCC-----hHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEG-----LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~-----~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.||+|++++.....+.+. ....+...+.++|+|||.++-
T Consensus 271 ---~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i 315 (354)
T 3tma_A 271 ---PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315 (354)
T ss_dssp ---CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred ---CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4689999998654333322 124566777889999998753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-11 Score=119.36 Aligned_cols=102 Identities=16% Similarity=0.007 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|+++++.+++.++++++++|+.++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~------------~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---- 141 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM------------RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---- 141 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG----
T ss_pred CCCEEEECccccCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc----
Confidence 689999999999999999999864 9999999999999999999999997799999999988752
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++++.....-. .......+.++|+|||.++-
T Consensus 142 ~~~~D~v~~~~~~~~~~~---~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 142 FLKADVVFLSPPWGGPDY---ATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp GCCCSEEEECCCCSSGGG---GGSSSBCTTTSCSSCHHHHH
T ss_pred cCCCCEEEECCCcCCcch---hhhHHHHHHhhcCCcceeHH
Confidence 368999999765432211 11122234578999998653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-10 Score=109.27 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=78.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+ .+|+++|.++.+++.|+++++.+++. +++++.+|..+....
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~------------~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~- 140 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLV------------QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA- 140 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS------------SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC------------CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc-
Confidence 4578999999999999999999985 49999999999999999999999987 799999998775432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++...-..+ . +.+.++|+|||+++
T Consensus 141 --~~~~D~i~~~~~~~~~-----~----~~~~~~L~pgG~lv 171 (210)
T 3lbf_A 141 --RAPFDAIIVTAAPPEI-----P----TALMTQLDEGGILV 171 (210)
T ss_dssp --GCCEEEEEESSBCSSC-----C----THHHHTEEEEEEEE
T ss_pred --CCCccEEEEccchhhh-----h----HHHHHhcccCcEEE
Confidence 3689999985322211 1 13567999999876
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-10 Score=113.19 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=81.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++..+ ..+|+++|.|+.|++.|++++..++ +++++.++..++..
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--- 106 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYP----------EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--- 106 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC---
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC---
Confidence 4578999999999999999999863 3599999999999999998876554 89999999988764
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++...-..+ .+.....++..+.++|+|||+++
T Consensus 107 -~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 145 (234)
T 3dtn_A 107 -EEKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFI 145 (234)
T ss_dssp -CSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -CCCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 2689999986433222 22122346677778999999987
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.1e-11 Score=119.83 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=71.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-- 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-- 141 (694)
+.++.+|||||||+|.+++.+++.++ +|+|+|.|+.|++.|+++++.+. ++.+..++..
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~------------~V~gvD~S~~ml~~Ar~~~~~~~-------v~~~~~~~~~~~ 103 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGA------------SVTVFDFSQRMCDDLAEALADRC-------VTIDLLDITAEI 103 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHTSSSC-------CEEEECCTTSCC
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCC------------EEEEEECCHHHHHHHHHHHHhcc-------ceeeeeeccccc
Confidence 56789999999999999999999875 99999999999999998876541 2233333322
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.+.+++||+|+++.+-..+ ........+..+.++| |||+++
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRF-TTEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGS-CHHHHHHHHHHHHHHH-TTSEEE
T ss_pred ccccCCCccEEEEhhhhHhC-CHHHHHHHHHHHHHhC-cCcEEE
Confidence 11234689999996433222 2222344555556788 999987
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=117.96 Aligned_cols=109 Identities=10% Similarity=-0.032 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-----cEEEEeccc----
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-----NIKVINKRS---- 136 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-----~I~vi~~~~---- 136 (694)
++.+|||||||+|.....+++.+. .+|+|+|+|+.|++.|++.....+... +++++..++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~-----------~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~ 116 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEI-----------ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDT 116 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCC-----------CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccch
Confidence 478999999999975554455543 589999999999999999887665421 266777776
Q ss_pred --cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 --DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 --~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++... ...++||+|+|...-+++........++..+.++|+|||+++-
T Consensus 117 ~~~~l~~~-~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~ 167 (302)
T 2vdw_A 117 FVSSVREV-FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLI 167 (302)
T ss_dssp HHHHHHTT-CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhhhcc-ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 222110 1136899999853222222222346777788889999999864
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-10 Score=110.32 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++..+ ..+|+++|.|+.+++.|+++++.+++. +++++.+++.++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~---- 129 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP----------EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS---- 129 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----------TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC----
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCc----
Confidence 478999999999999999998853 369999999999999999999999987 49999999987641
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++||+|++..+ .....++....++|+|||.++-.
T Consensus 130 ~~~~D~i~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 130 EPPFDGVISRAF-------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CSCEEEEECSCS-------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred cCCcCEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 268999998532 22566777778899999988754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-10 Score=115.38 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=81.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHH-cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARA-MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~-g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
+.++.+|||+|||+|.++..+++. ++ ..+|+++|.++.+++.|+++++.+|+.++++++.+|..+..
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~----------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 158 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGP----------EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-- 158 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT----------TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC--
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCC----------CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc--
Confidence 567899999999999999999998 42 36999999999999999999999999878999999988642
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++++.. ...++....++|+|||+++
T Consensus 159 --~~~~~D~v~~~~~~--------~~~~l~~~~~~L~~gG~l~ 191 (255)
T 3mb5_A 159 --EEENVDHVILDLPQ--------PERVVEHAAKALKPGGFFV 191 (255)
T ss_dssp --CCCSEEEEEECSSC--------GGGGHHHHHHHEEEEEEEE
T ss_pred --CCCCcCEEEECCCC--------HHHHHHHHHHHcCCCCEEE
Confidence 12579999986433 2334455567899999876
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-11 Score=122.16 Aligned_cols=112 Identities=14% Similarity=0.038 Sum_probs=77.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC-------------------
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM------------------- 125 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl------------------- 125 (694)
.++.+|||||||+|.++..+++.++ .+|+|+|.|+.|++.|+++++.+..
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-----------~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~ 122 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-----------QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 122 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-----------EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-----------cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCc
Confidence 4578999999999999888777765 5899999999999999988765421
Q ss_pred ---------CCcEE-EEeccccccc-cccCCCCCccEEEEccccccccCC-ChHHHHHHHHHhccCCCCeEEcC
Q 044245 126 ---------GRNIK-VINKRSDELE-VGVDIDSRADILVSEILDSELLGE-GLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 126 ---------~~~I~-vi~~~~~~l~-~~~~l~~~~DlIvse~~~~~l~~e-~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+|+ ++.+|+.+.. ++....++||+|++...-..+... ..+..++..+.++|+|||.++-.
T Consensus 123 ~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 123 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred chhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11354 8888887732 211123589999995433222111 12334556666899999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=121.35 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC--cEEEEecccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR--NIKVINKRSDELEVGV 143 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~--~I~vi~~~~~~l~~~~ 143 (694)
++.+|||+|||+|.+++.+++.++ ..+|+++|.|+.|++.|+++++.|++.+ +++++.+|..+..
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p----------~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~--- 288 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNP----------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--- 288 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---
T ss_pred CCCeEEEEeCcchHHHHHHHHHCC----------CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---
Confidence 458999999999999999999974 3699999999999999999999999864 5888999987632
Q ss_pred CCCCCccEEEEccccccc--cCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSEL--LGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l--~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++||+|++++..+.. +.......++....++|+|||+++-
T Consensus 289 -~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 289 -EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp -CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 13689999998754321 2234445667777789999998764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-10 Score=114.12 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=81.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|++++ . +...+++++.++..+++++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~- 101 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY------------RYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLP- 101 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC------------EEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSC-
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCC-
Confidence 45688999999999999999998764 8999999999999999887 3 3335899999999887542
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|++...-..+ ...+.++..+.++|+|||.++-.
T Consensus 102 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 102 --DESVHGVIVVHLWHLV---PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp --TTCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCeeEEEECCchhhc---CCHHHHHHHHHHHCCCCcEEEEE
Confidence 3689999985322221 12556666777899999998744
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=112.82 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=84.7
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
..+.+...+.++.+|||||||+|.++..+++.+. +|+++|.++.+++.|+++. ...+++++.++
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d 106 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY------------KAVGVDISEVMIQKGKERG----EGPDLSFIKGD 106 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHTTT----CBTTEEEEECB
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCC------------eEEEEECCHHHHHHHHhhc----ccCCceEEEcc
Confidence 4555666677889999999999999999999864 8999999999999998753 23589999999
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+++.+ +++||+|++...-.+ -.....++..+.++|+|||+++-
T Consensus 107 ~~~~~~~---~~~fD~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~i 151 (242)
T 3l8d_A 107 LSSLPFE---NEQFEAIMAINSLEW---TEEPLRALNEIKRVLKSDGYACI 151 (242)
T ss_dssp TTBCSSC---TTCEEEEEEESCTTS---SSCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcCCCC---CCCccEEEEcChHhh---ccCHHHHHHHHHHHhCCCeEEEE
Confidence 9887642 368999998532222 22345667777789999998863
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=112.62 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=84.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.+++.+++..+ ..+|+++|+|+.+++.|+++++.++++ +++++++|+.+...
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~----------~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--- 173 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP----------DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--- 173 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----------TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT---
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc---
Confidence 4578999999999999999998753 369999999999999999999999987 79999999876421
Q ss_pred CCCCccEEEEccccccc----------cCC------------ChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSEL----------LGE------------GLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l----------~~e------------~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++++..... .++ .....++....++|+|||.++-
T Consensus 174 -~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~ 236 (276)
T 2b3t_A 174 -GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 236 (276)
T ss_dssp -TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred -cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3689999998644211 011 1234566677789999998874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=111.72 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=80.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ +..+|+++|.++.|++.++++++.+ .+++++.+|..+.....
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~---------~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~ 138 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVG---------WEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYR 138 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGT
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhC---------CCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhh
Confidence 45688999999999999999998742 1369999999999999999888765 48999999988743111
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+++||+|+++.. .......++....++|+|||.++-
T Consensus 139 ~~~~~~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~ 176 (227)
T 1g8a_A 139 ALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp TTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCceEEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEE
Confidence 23458999998643 233334546666789999998763
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-10 Score=110.33 Aligned_cols=100 Identities=22% Similarity=0.145 Sum_probs=77.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++.. .+++++.++..+++.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-- 104 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR------------TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-- 104 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC------------EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC--
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC------------eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC--
Confidence 4688999999999999999999864 99999999999999987654 4789999999887542
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|++...-..+ .+.....++..+.++|+|||.++-
T Consensus 105 --~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i 143 (220)
T 3hnr_A 105 --TSIDTIVSTYAFHHL-TDDEKNVAIAKYSQLLNKGGKIVF 143 (220)
T ss_dssp --SCCSEEEEESCGGGS-CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --CCeEEEEECcchhcC-ChHHHHHHHHHHHHhcCCCCEEEE
Confidence 689999985322222 111112366777789999999874
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=116.62 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|+++...++ ..+++++.++..++..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~--- 143 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF-----------REVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPE--- 143 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC-----------SEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCC---
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC-----------CEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCC---
Confidence 478999999999999999888764 599999999999999999887765 34799999998877542
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++...-..+ .+..+..++..+.++|+|||+++-
T Consensus 144 ~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i 183 (241)
T 2ex4_A 144 PDSYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPNGIIVI 183 (241)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2589999986322221 122244667777789999998874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-10 Score=111.06 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=80.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++... +..+|+|+|.++.|++.+.++++.+ .+++++.+|..+...-.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g---------~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~ 142 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVG---------PDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYR 142 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhC---------CCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhc
Confidence 45688999999999999999998842 1369999999999998888888876 48999999988743101
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||+|++++. .......++....++|+|||+++-
T Consensus 143 ~~~~~~D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 143 MLIAMVDVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp GGCCCEEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCcEEEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEE
Confidence 12368999999654 223334456556779999998875
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.1e-10 Score=114.49 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=79.5
Q ss_pred HHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcC-CHHHHHHHHHHH-----HHcCCC-
Q 044245 56 YRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACES-YLPMVKLMKKVL-----HVNGMG- 126 (694)
Q Consensus 56 y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~-s~~~~~~A~~~~-----~~ngl~- 126 (694)
..+.+.+. ..++.+|||||||+|.+++.+++.++ .+|+++|. ++.|++.|++++ +.+++.
T Consensus 67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~-----------~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~ 135 (281)
T 3bzb_A 67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA-----------DQVVATDYPDPEILNSLESNIREHTANSCSSET 135 (281)
T ss_dssp HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC-----------SEEEEEECSCHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCC-----------CEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc
Confidence 34444433 34688999999999999999999875 59999999 899999999999 556664
Q ss_pred ---CcEEEEeccccccc--cccC-CCCCccEEEE-ccccccccCCChHHHHHHHHHhccC---C--CCeEE
Q 044245 127 ---RNIKVINKRSDELE--VGVD-IDSRADILVS-EILDSELLGEGLIPTLQHAHDRLLV---E--NPLTV 185 (694)
Q Consensus 127 ---~~I~vi~~~~~~l~--~~~~-l~~~~DlIvs-e~~~~~l~~e~~l~~l~~~~~~~L~---p--~G~ii 185 (694)
++|+++..++.+.. .... ..++||+|++ +++ .+....+.++..+.++|+ | ||+++
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl----~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~ 202 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLL----SFHQAHDALLRSVKMLLALPANDPTAVAL 202 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCC----SCGGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcc----cChHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 47888866654421 0000 1368999987 322 234456777788888999 9 99653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-10 Score=106.55 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=82.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~~ 143 (694)
.++.+|||+|||+|.++..+++.+ .+|+++|.++.+++.|++++..+++.+ +++++.++..+...
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~~------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 116 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADEV------------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-- 116 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGS------------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC------------CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--
Confidence 467899999999999999998884 499999999999999999999999874 59999999877421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|+++..... .......++....++|+|||.++-
T Consensus 117 --~~~~D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~ 155 (194)
T 1dus_A 117 --DRKYNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp --TSCEEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCCceEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEE
Confidence 368999999653211 112345666777789999998763
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=109.46 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=85.8
Q ss_pred hCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC-
Q 044245 47 LNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM- 125 (694)
Q Consensus 47 l~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl- 125 (694)
+.+........+.+...+.++.+|||||||+|.++..+++... +..+|+++|.++.+++.|+++++.+++
T Consensus 58 ~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 128 (226)
T 1i1n_A 58 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG---------CTGKVIGIDHIKELVDDSVNNVRKDDPT 128 (226)
T ss_dssp ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHCTH
T ss_pred ecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhC---------CCcEEEEEeCCHHHHHHHHHHHHhhccc
Confidence 3344333333444443466789999999999999999998853 135999999999999999999988775
Q ss_pred ---CCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 126 ---GRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 126 ---~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++++++.++..+... ..++||+|++.... +..+ ..+.++|+|||+++-
T Consensus 129 ~~~~~~v~~~~~d~~~~~~---~~~~fD~i~~~~~~-----~~~~----~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 129 LLSSGRVQLVVGDGRMGYA---EEAPYDAIHVGAAA-----PVVP----QALIDQLKPGGRLIL 180 (226)
T ss_dssp HHHTSSEEEEESCGGGCCG---GGCCEEEEEECSBB-----SSCC----HHHHHTEEEEEEEEE
T ss_pred ccCCCcEEEEECCcccCcc---cCCCcCEEEECCch-----HHHH----HHHHHhcCCCcEEEE
Confidence 4589999999875432 13579999875322 1122 345578999998863
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-10 Score=111.77 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=83.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+|+.++|+++.++..+... .
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~---------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~--~ 146 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIP---------EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD--E 146 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSC---------TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH--H
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH--H
Confidence 3578999999999999999999853 1369999999999999999999999998899999999876421 1
Q ss_pred C------CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 I------DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l------~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+ .++||+|+++.. ....+.++....++|+|||+++-+
T Consensus 147 l~~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 147 MIKDEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp HHHSGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHhccCCCCCEEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEe
Confidence 1 368999998521 123455566666799999998754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-10 Score=113.03 Aligned_cols=104 Identities=16% Similarity=0.093 Sum_probs=81.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|+++...+ .+++++.++..+++.+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~-- 155 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY-----------ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLP-- 155 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC-----------SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCC--
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc-----------CEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCC--
Confidence 3578999999999999999998875 58999999999999999887554 4899999999887542
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.++ .+.....++..+.++|+|||+++-
T Consensus 156 -~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i 195 (254)
T 1xtp_A 156 -PNTYDLIVIQWTAIYL-TDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp -SSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCeEEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3689999985432222 112355667777789999998874
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-10 Score=115.40 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=82.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++... .+|+++|.|+.+++.|+++...+ .+++++.+|..+++.+
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~- 117 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYG-----------AHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFP- 117 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-----------CEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCC-
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcC-----------CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCC-
Confidence 45678999999999999999999843 49999999999999999876544 5899999999887542
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+++||+|++...-.++ .......++..+.++|+|||.++-.
T Consensus 118 --~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (266)
T 3ujc_A 118 --ENNFDLIYSRDAILAL-SLENKNKLFQKCYKWLKPTGTLLIT 158 (266)
T ss_dssp --TTCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCcEEEEeHHHHHHhc-ChHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3689999985322211 1134556677777899999998743
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.5e-11 Score=119.14 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=84.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.++++.+ +.++|+++|.++.+++.|+++++.+|+.++|+++.++..+... .
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~--~ 127 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALP---------DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH--S 127 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSC---------TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH--H
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH--H
Confidence 4578999999999999999998753 2369999999999999999999999998899999999876531 1
Q ss_pred C-----CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 145 I-----DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 145 l-----~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
+ .++||+|+++.. ......++....++|+|||+++-+.
T Consensus 128 ~~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 128 LLNEGGEHQFDFIFIDAD------KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp HHHHHCSSCEEEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HhhccCCCCEeEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 1 368999998532 1224445556667999999988643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=114.68 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc-c--cc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL-E--VG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l-~--~~ 142 (694)
++.+|||+|||+|.+++.+++... ..+|+|+|+|+.|++.|+++++.+++.++|+++++|..+. . ++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN----------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK 134 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh
Confidence 467999999999999988887742 2599999999999999999999999988899999997762 1 11
Q ss_pred cCCCCCccEEEEccccc
Q 044245 143 VDIDSRADILVSEILDS 159 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~ 159 (694)
...+++||+|++++...
T Consensus 135 ~~~~~~fD~i~~npp~~ 151 (254)
T 2h00_A 135 EESEIIYDFCMCNPPFF 151 (254)
T ss_dssp TCCSCCBSEEEECCCCC
T ss_pred cccCCcccEEEECCCCc
Confidence 10015799999997543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=111.58 Aligned_cols=105 Identities=20% Similarity=0.173 Sum_probs=83.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+++.++|+++.++..+... .
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 123 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAIS---------ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA--G 123 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSC---------TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT--T
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc--c
Confidence 3578999999999999999998743 1369999999999999999999999998889999999876421 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++ ||+|+++.. ....+.++..+.++|+|||+++-+
T Consensus 124 ~~~-fD~v~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 124 QRD-IDILFMDCD------VFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp CCS-EEEEEEETT------TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-CCEEEEcCC------hhhhHHHHHHHHHhcCCCeEEEEE
Confidence 346 999998621 223556667777899999998754
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-10 Score=119.50 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc
Q 044245 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
+...+.++.+|||+|||+|.+++. ++ ++ .+|+++|.|+.+++.|+++++.|++.++++++++|..++
T Consensus 189 i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~-----------~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~ 255 (336)
T 2yx1_A 189 IMKKVSLNDVVVDMFAGVGPFSIA-CK-NA-----------KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV 255 (336)
T ss_dssp HHHHCCTTCEEEETTCTTSHHHHH-TT-TS-----------SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHhcCCCCEEEEccCccCHHHHh-cc-CC-----------CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh
Confidence 344556789999999999999999 87 44 699999999999999999999999977999999998875
Q ss_pred ccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 140 EVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
. ++||+|++++.... ..+.....++|+|||.++-.
T Consensus 256 ~------~~fD~Vi~dpP~~~-------~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 256 D------VKGNRVIMNLPKFA-------HKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp C------CCEEEEEECCTTTG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred c------CCCcEEEECCcHhH-------HHHHHHHHHHcCCCCEEEEE
Confidence 3 68999999865432 13444555689999987644
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-10 Score=110.75 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++..+ ..+|+|+|.|+.|++.|+++++.+ .++.++.++..+.....
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~ 138 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD----------KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA 138 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT----------TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC----------CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccc
Confidence 45678999999999999999998842 259999999999999999887655 58999999988721100
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||+|+.++. ..+....++..+.++|+|||+++-
T Consensus 139 ~~~~~~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 139 NIVEKVDVIYEDVA-----QPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp TTSCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCccEEEEEEecC-----ChhHHHHHHHHHHHhCCCCcEEEE
Confidence 12268999996431 233446666677789999998764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=119.10 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=79.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC------------------
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG------------------ 126 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~------------------ 126 (694)
.++.+|||||||+|.+++.+++..+ ..+|+|+|+++.|++.|+++++.++..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~----------~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWG----------PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGE 114 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTC----------CSEEEEEESCHHHHHHHHHTC------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcC----------CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 4579999999999999999999853 259999999999999999987765422
Q ss_pred ---------------------------------------CcEEEEecccccccc--ccCCCCCccEEEEcccccccc---
Q 044245 127 ---------------------------------------RNIKVINKRSDELEV--GVDIDSRADILVSEILDSELL--- 162 (694)
Q Consensus 127 ---------------------------------------~~I~vi~~~~~~l~~--~~~l~~~~DlIvse~~~~~l~--- 162 (694)
++|+++++|...... .....++||+|++..+...+-
T Consensus 115 ~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~ 194 (292)
T 3g07_A 115 EGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW 194 (292)
T ss_dssp ---------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH
T ss_pred cccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC
Confidence 689999999875320 001236899999853321110
Q ss_pred CCChHHHHHHHHHhccCCCCeEEc
Q 044245 163 GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 163 ~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++..+..++..+.++|+|||+++-
T Consensus 195 ~~~~~~~~l~~~~~~LkpGG~lil 218 (292)
T 3g07_A 195 GDEGLKRMFRRIYRHLRPGGILVL 218 (292)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 222345566677789999998874
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-10 Score=112.73 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=83.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+++.++|+++.+++.+......
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 133 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALP---------KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELI 133 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC---------TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCC---------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhh
Confidence 4678999999999999999998742 1369999999999999999999999998889999999866421000
Q ss_pred ---CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 ---IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 ---l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|+++.. ......++....++|+|||+++-
T Consensus 134 ~~~~~~~fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~ 172 (225)
T 3tr6_A 134 HAGQAWQYDLIYIDAD------KANTDLYYEESLKLLREGGLIAV 172 (225)
T ss_dssp TTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hccCCCCccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 0168999997532 12244556666679999999873
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=114.36 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV- 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~- 143 (694)
.++.+|||+|||+|.++..+++.++ ..+|+++|+|+.|++.|++++..++. +++++++|+.+. ...
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~----------~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~~~ 95 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP----------GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEW-LIER 95 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT----------TEEEEEEECC---------------------CCHHHHHHH-HHHH
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhh-hhhh
Confidence 5678999999999999999999964 35999999999999999999998887 799999998762 211
Q ss_pred -CCCCCccEEEEccccccccC-----C---------------C---hHHHHHHHHHhccCCCCe-EE
Q 044245 144 -DIDSRADILVSEILDSELLG-----E---------------G---LIPTLQHAHDRLLVENPL-TV 185 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~l~~-----e---------------~---~l~~l~~~~~~~L~p~G~-ii 185 (694)
...++||+|++++.....-. . . .+..++....++|+|||+ ++
T Consensus 96 ~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 96 AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 01268999999764321100 0 0 014455556689999998 44
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=113.83 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=77.7
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
+..++...+.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++ . .+++++.+|
T Consensus 38 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d 99 (226)
T 3m33_A 38 FDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAA------------RWAAYDFSPELLKLARAN-----A-PHADVYEWN 99 (226)
T ss_dssp HHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSS------------EEEEEESCHHHHHHHHHH-----C-TTSEEEECC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHh-----C-CCceEEEcc
Confidence 4445555567889999999999999999999864 999999999999999876 2 379999999
Q ss_pred cc-ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 136 SD-ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 136 ~~-~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.. .++.+ .+++||+|++.. . ...++..+.++|+|||+++
T Consensus 100 ~~~~~~~~--~~~~fD~v~~~~--------~-~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 100 GKGELPAG--LGAPFGLIVSRR--------G-PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp SCSSCCTT--CCCCEEEEEEES--------C-CSGGGGGHHHHEEEEEEEE
T ss_pred hhhccCCc--CCCCEEEEEeCC--------C-HHHHHHHHHHHcCCCcEEE
Confidence 84 44432 136899999851 1 2233445567999999999
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=109.35 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=81.7
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEE
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----GRNIKVI 132 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----~~~I~vi 132 (694)
.+.+...+.++.+|||||||+|.++..+++.+... ..+..+|+++|.++.+++.|+++++.+++ .++++++
T Consensus 71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~-----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 145 (227)
T 2pbf_A 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVL-----ENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145 (227)
T ss_dssp HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTT-----TCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhccc-----CCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence 34443346678999999999999999999875200 00125999999999999999999998884 3589999
Q ss_pred eccccccc----cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELE----VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~----~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+|..+.. .. .++||+|++..... .. ...+.++|+|||+++
T Consensus 146 ~~d~~~~~~~~~~~---~~~fD~I~~~~~~~-----~~----~~~~~~~LkpgG~lv 190 (227)
T 2pbf_A 146 HKNIYQVNEEEKKE---LGLFDAIHVGASAS-----EL----PEILVDLLAENGKLI 190 (227)
T ss_dssp ECCGGGCCHHHHHH---HCCEEEEEECSBBS-----SC----CHHHHHHEEEEEEEE
T ss_pred ECChHhcccccCcc---CCCcCEEEECCchH-----HH----HHHHHHhcCCCcEEE
Confidence 99987642 21 25799999853322 12 244566899999876
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.9e-10 Score=119.01 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=85.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-----C-CC-CcEEEEeccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-----G-MG-RNIKVINKRS 136 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-----g-l~-~~I~vi~~~~ 136 (694)
+.++.+|||||||+|.++..+++..+ +..+|+++|+|+.|++.|+++++.+ | +. .+++++.+++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~ 151 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVG---------EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI 151 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHT---------TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH
Confidence 45688999999999999999998853 1369999999999999999998766 4 32 5899999999
Q ss_pred cccccc---cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVG---VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~---~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.++... ...+++||+|+++.+-..+ .....++..+.++|+|||+++-.
T Consensus 152 ~~l~~~~~~~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 152 ENLATAEPEGVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp TCGGGCBSCCCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhhhcccCCCCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 886210 0113689999996543322 23566777778899999988743
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=102.10 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=77.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+ .+|+++|.++.+++.|+++++.++++ +++++.++..+ ..+.
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~~~------------~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~ 98 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKRC------------KFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VLDK 98 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHTTS------------SEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HGGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhcC------------CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cccC
Confidence 4567899999999999999999832 59999999999999999999999984 79999999877 3322
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|++... ...+.++..+.++ |||.++-
T Consensus 99 ---~~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~ 129 (183)
T 2yxd_A 99 ---LEFNKAFIGGT-------KNIEKIIEILDKK--KINHIVA 129 (183)
T ss_dssp ---CCCSEEEECSC-------SCHHHHHHHHHHT--TCCEEEE
T ss_pred ---CCCcEEEECCc-------ccHHHHHHHHhhC--CCCEEEE
Confidence 58999998644 2355555555555 9998763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-10 Score=109.03 Aligned_cols=105 Identities=15% Similarity=0.067 Sum_probs=78.5
Q ss_pred ccCCCEEEEEcCCCCHHHH-HHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSM-MAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl-~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
..++.+|||+|||+|.++. .+++.+ .+|+++|.|+.|++.|+++++.++. +++++.++..+++.+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~------------~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~ 86 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDG------------YKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFK 86 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTT------------CEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCC------------CEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCC
Confidence 4567899999999998744 444443 4999999999999999999887773 688999999886532
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.++ .......++..+.++|+|||.++-
T Consensus 87 ---~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 126 (209)
T 2p8j_A 87 ---DESMSFVYSYGTIFHM-RKNDVKEAIDEIKRVLKPGGLACI 126 (209)
T ss_dssp ---TTCEEEEEECSCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---CCceeEEEEcChHHhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3689999985322221 122345666677789999998874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=110.10 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=84.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++..+ ..+|+++|.++.+++.|+++++.+|+.++|+++.++..+... .
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 120 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALP----------EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE--K 120 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCT----------TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH--H
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH--h
Confidence 4678999999999999999999853 259999999999999999999999998789999999877421 1
Q ss_pred C--CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 I--DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l--~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
. +++||+|+++... + ....++....++|+|||+++-.
T Consensus 121 ~~~~~~fD~I~~~~~~-----~-~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAK-----G-QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp HTTSCCEEEEEEEGGG-----S-CHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCCccEEEECCCH-----H-HHHHHHHHHHHHcCCCeEEEEE
Confidence 1 3689999985332 1 3456666677899999988754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=109.63 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=83.5
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
+.+.+.+.+.+.++.+|||||||+|.++..+++.++ +|+++|.|+.|++.|+++. .+++++.
T Consensus 28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~~D~s~~~~~~a~~~~------~~~~~~~ 89 (239)
T 3bxo_A 28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG------------DTAGLELSEDMLTHARKRL------PDATLHQ 89 (239)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS------------EEEEEESCHHHHHHHHHHC------TTCEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC------------cEEEEeCCHHHHHHHHHhC------CCCEEEE
Confidence 344555666566789999999999999999999975 8999999999999998753 3689999
Q ss_pred ccccccccccCCCCCccEEEEc--cccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 134 KRSDELEVGVDIDSRADILVSE--ILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse--~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++..++.. +++||+|++. .+. ++........++..+.++|+|||.++-.
T Consensus 90 ~d~~~~~~----~~~~D~v~~~~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 90 GDMRDFRL----GRKFSAVVSMFSSVG-YLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp CCTTTCCC----SSCEEEEEECTTGGG-GCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCHHHccc----CCCCcEEEEcCchHh-hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99887653 4689999952 121 1111123456667777899999988754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=108.37 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=78.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.|+.+++.|++ ++. .+++++.++..++ .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~-- 103 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD------------RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-T-- 103 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS------------EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-C--
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC------------eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-C--
Confidence 45678999999999999999999864 99999999999999987 555 4799999999886 2
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++||+|++...-.++ .+.....++..+.++|+|||.++-
T Consensus 104 -~~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~ 144 (218)
T 3ou2_A 104 -PDRQWDAVFFAHWLAHV-PDDRFEAFWESVRSAVAPGGVVEF 144 (218)
T ss_dssp -CSSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCceeEEEEechhhcC-CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 23789999985322221 222245667777789999998863
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=114.23 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=80.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ ...+|+++|.|+.+++.|+++++.+|+. +++++.+|..+...
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~-- 140 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVG---------EKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP-- 140 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG--
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc--
Confidence 56789999999999999999999875 1257999999999999999999999987 59999999887432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++...-..+ . ..+.+.|+|||+++-
T Consensus 141 -~~~~fD~Iv~~~~~~~~-----~----~~~~~~LkpgG~lvi 173 (317)
T 1dl5_A 141 -EFSPYDVIFVTVGVDEV-----P----ETWFTQLKEGGRVIV 173 (317)
T ss_dssp -GGCCEEEEEECSBBSCC-----C----HHHHHHEEEEEEEEE
T ss_pred -cCCCeEEEEEcCCHHHH-----H----HHHHHhcCCCcEEEE
Confidence 12689999986433221 1 345568999998864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-10 Score=114.60 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=82.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ +..+|+++|.|+.+++.|++++..++. +++++.+|..+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-- 86 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLP---------EGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-- 86 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSC---------TTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC--
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc--
Confidence 35678999999999999999988743 125999999999999999999887665 89999999998653
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+-..+ ...+.++..+.++|+|||.++
T Consensus 87 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 87 --NDKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKII 123 (284)
T ss_dssp --SSCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEE
T ss_pred --CCCeeEEEECChhhcC---CCHHHHHHHHHHHcCCCCEEE
Confidence 3689999986433222 234566667778999999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.8e-10 Score=115.53 Aligned_cols=129 Identities=12% Similarity=-0.019 Sum_probs=88.1
Q ss_pred hhCCHHHHHHHHHHHHh---hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH
Q 044245 46 MLNDSYRNRAYRLAIDK---MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV 122 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~---~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ 122 (694)
..++..+...+.+.+.. .+.++.+|||||||+|.++..+++.+. .+|+++|+|+.|++.|+++...
T Consensus 11 ~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-----------~~v~gvD~s~~~l~~a~~~~~~ 79 (313)
T 3bgv_A 11 NFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI-----------NKLVCTDIADVSVKQCQQRYED 79 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC-----------CEEEEEeCCHHHHHHHHHHHHH
Confidence 34444444444444333 234678999999999999998887543 6999999999999999998876
Q ss_pred cC------CCCcEEEEeccccccccccCC---CCCccEEEEccccccc-cCCChHHHHHHHHHhccCCCCeEE
Q 044245 123 NG------MGRNIKVINKRSDELEVGVDI---DSRADILVSEILDSEL-LGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 123 ng------l~~~I~vi~~~~~~l~~~~~l---~~~~DlIvse~~~~~l-~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++ ...+++++.+|..++.....+ +++||+|++...-+.. -.......++..+.++|+|||.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (313)
T 3bgv_A 80 MKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI 152 (313)
T ss_dssp HHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhcccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 52 234799999999886521111 2489999985422222 111234567777788999999987
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.01 E-value=8e-10 Score=108.96 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=78.6
Q ss_pred HHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc
Q 044245 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
+...+.++.+|||||||+|.++..+++.+. +|+++|.|+.+++.|+++. ++.++.++..++
T Consensus 37 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~ 97 (211)
T 3e23_A 37 FLGELPAGAKILELGCGAGYQAEAMLAAGF------------DVDATDGSPELAAEASRRL-------GRPVRTMLFHQL 97 (211)
T ss_dssp HHTTSCTTCEEEESSCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGC
T ss_pred HHHhcCCCCcEEEECCCCCHHHHHHHHcCC------------eEEEECCCHHHHHHHHHhc-------CCceEEeeeccC
Confidence 333456789999999999999999998864 8999999999999999876 356677888776
Q ss_pred ccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 140 EVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
. ..++||+|++...-..+ .......++..+.++|+|||+++-
T Consensus 98 ~----~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 139 (211)
T 3e23_A 98 D----AIDAYDAVWAHACLLHV-PRDELADVLKLIWRALKPGGLFYA 139 (211)
T ss_dssp C----CCSCEEEEEECSCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred C----CCCcEEEEEecCchhhc-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5 24789999985322222 112345667777789999998864
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=104.18 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=82.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. +|+++|.|+.+++.|+++++.+++.++++++.++..+. .+.
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~~------------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~ 97 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRVR------------RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCK 97 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSS------------EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcC------------EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-ccc
Confidence 55788999999999999999998763 99999999999999999999999867899999987762 111
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++.... + .+..++....++|+|||.++-
T Consensus 98 --~~~~D~v~~~~~~-----~-~~~~~l~~~~~~l~~gG~l~~ 132 (192)
T 1l3i_A 98 --IPDIDIAVVGGSG-----G-ELQEILRIIKDKLKPGGRIIV 132 (192)
T ss_dssp --SCCEEEEEESCCT-----T-CHHHHHHHHHHTEEEEEEEEE
T ss_pred --CCCCCEEEECCch-----H-HHHHHHHHHHHhcCCCcEEEE
Confidence 1479999985321 1 246666777789999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-10 Score=119.90 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++.+...+.++.+|||+|||+|.+++.+++.|+ +|+++|+|+.|++.|+++++.||+.++ +.++|.
T Consensus 205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga------------~V~avDis~~al~~a~~n~~~ng~~~~--~~~~D~ 270 (393)
T 4dmg_A 205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGA------------YALAVDKDLEALGVLDQAALRLGLRVD--IRHGEA 270 (393)
T ss_dssp HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHHTCCCE--EEESCH
T ss_pred HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCC------------eEEEEECCHHHHHHHHHHHHHhCCCCc--EEEccH
Confidence 344555566699999999999999999999876 499999999999999999999999754 558887
Q ss_pred cccccccCCCCCccEEEEccccccccCCC------hHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEG------LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~------~l~~l~~~~~~~L~p~G~ii 185 (694)
.++.. ...++||+|++++.....-... ....+.....++|+|||.++
T Consensus 271 ~~~l~--~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv 323 (393)
T 4dmg_A 271 LPTLR--GLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLW 323 (393)
T ss_dssp HHHHH--TCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHH--HhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 76531 1234599999987542110011 12344555567999999987
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.4e-10 Score=111.11 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=76.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+. +|+|+|.|+.|++.|+++... +++++.++..++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---- 99 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN------------DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---- 99 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS------------CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC----
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC------------cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC----
Confidence 3578999999999999999998864 899999999999999876532 7999999988862
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHH-hccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHD-RLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~-~~L~p~G~iiP 186 (694)
.+++||+|++.-+-.++ .....++..+. ++|+|||.++-
T Consensus 100 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 100 LPRRYDNIVLTHVLEHI---DDPVALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp CSSCEEEEEEESCGGGC---SSHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcccEEEEhhHHHhh---cCHHHHHHHHHHHhcCCCCEEEE
Confidence 23689999985332222 12456777777 89999998864
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=106.02 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++ . .+++++.++..+++.+ +
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~---~ 100 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH------------QIEGLEPATRLVELARQT-----H-PSVTFHHGTITDLSDS---P 100 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC------------CEEEECCCHHHHHHHHHH-----C-TTSEEECCCGGGGGGS---C
T ss_pred CCeEEEecCCCCHHHHHHHhcCC------------eEEEEeCCHHHHHHHHHh-----C-CCCeEEeCcccccccC---C
Confidence 78999999999999999999864 899999999999999876 2 3799999999887642 3
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|++...-.++ .......++..+.++|+|||.++-
T Consensus 101 ~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i 139 (203)
T 3h2b_A 101 KRWAGLLAWYSLIHM-GPGELPDALVALRMAVEDGGGLLM 139 (203)
T ss_dssp CCEEEEEEESSSTTC-CTTTHHHHHHHHHHTEEEEEEEEE
T ss_pred CCeEEEEehhhHhcC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 689999985332222 223456667777789999998863
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=116.83 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=79.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHH-------HHHHHHcCCC-CcEEEEecc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLM-------KKVLHVNGMG-RNIKVINKR 135 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A-------~~~~~~ngl~-~~I~vi~~~ 135 (694)
+.++.+|||||||+|.+++.+|+..+ ..+|+|+|.++.+++.| +++++.+|+. ++|+++.++
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g----------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECG----------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCC----------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 45789999999999999999999753 25899999999999999 8888888853 589999875
Q ss_pred cccc--ccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDEL--EVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l--~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.... .+. ...++||+|+++. .+.. ..++..+..+.+.|+|||+++-
T Consensus 310 ~~~~~~~~~-~~~~~FDvIvvn~---~l~~-~d~~~~L~el~r~LKpGG~lVi 357 (433)
T 1u2z_A 310 SFVDNNRVA-ELIPQCDVILVNN---FLFD-EDLNKKVEKILQTAKVGCKIIS 357 (433)
T ss_dssp CSTTCHHHH-HHGGGCSEEEECC---TTCC-HHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccccccc-cccCCCCEEEEeC---cccc-ccHHHHHHHHHHhCCCCeEEEE
Confidence 4321 110 0125799999752 2222 2344455667789999998863
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.4e-10 Score=113.60 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=81.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHH-cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARA-MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~-g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
+.++.+|||+|||+|.+++.++++ ++ ..+|+++|.++.+++.|+++++.+++.++++++.+|..+. ++
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGS----------SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTT----------TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CS
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCC----------CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-cc
Confidence 566889999999999999999998 43 3699999999999999999999999877999999998775 21
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++||+|++++.. ...++..+.++|+|||.++-
T Consensus 179 ---~~~~D~V~~~~~~--------~~~~l~~~~~~L~pgG~l~~ 211 (277)
T 1o54_A 179 ---EKDVDALFLDVPD--------PWNYIDKCWEALKGGGRFAT 211 (277)
T ss_dssp ---CCSEEEEEECCSC--------GGGTHHHHHHHEEEEEEEEE
T ss_pred ---CCccCEEEECCcC--------HHHHHHHHHHHcCCCCEEEE
Confidence 2579999986432 22344455668999998763
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.3e-10 Score=111.44 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=84.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--c
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV--G 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~--~ 142 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+|+.++|+++.++..+... .
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~ 139 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIP---------DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLL 139 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSC---------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 4578999999999999999999853 1369999999999999999999999998899999999876421 0
Q ss_pred cC--CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 143 VD--IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 143 ~~--l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.. ..++||+|+++.. ....+.+.....++|+|||+++-+.
T Consensus 140 ~~~~~~~~fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 140 QGQESEGSYDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HSTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hccCCCCCcCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 00 0368999998521 1234555666667999999887543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=108.34 Aligned_cols=99 Identities=21% Similarity=0.246 Sum_probs=80.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+ .+|+++|.++.+++.|+++.+.+++.++++++.++..+...+
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~~------------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~- 155 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEVA------------GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP- 155 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS------------SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhC------------CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC-
Confidence 4578999999999999999999984 599999999999999999999999877999999998774311
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++++.. ...++....++|+|||+++
T Consensus 156 --~~~~D~v~~~~~~--------~~~~l~~~~~~L~~gG~l~ 187 (248)
T 2yvl_A 156 --EGIFHAAFVDVRE--------PWHYLEKVHKSLMEGAPVG 187 (248)
T ss_dssp --TTCBSEEEECSSC--------GGGGHHHHHHHBCTTCEEE
T ss_pred --CCcccEEEECCcC--------HHHHHHHHHHHcCCCCEEE
Confidence 2579999985432 2233444567899999876
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=111.69 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=79.9
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK 134 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~ 134 (694)
...+.+.+.+.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++.. .+ ++.+
T Consensus 43 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~l~~a~~~~~-----~~--~~~~ 103 (260)
T 2avn_A 43 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF------------EVVLVDPSKEMLEVAREKGV-----KN--VVEA 103 (260)
T ss_dssp HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC------------EEEEEESCHHHHHHHHHHTC-----SC--EEEC
T ss_pred HHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCC------------eEEEEeCCHHHHHHHHhhcC-----CC--EEEC
Confidence 33455555566789999999999999999998864 89999999999999987643 12 6788
Q ss_pred cccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+..+++.+ +++||+|++...-.... +. ...++..+.++|+|||+++-
T Consensus 104 d~~~~~~~---~~~fD~v~~~~~~~~~~-~~-~~~~l~~~~~~LkpgG~l~~ 150 (260)
T 2avn_A 104 KAEDLPFP---SGAFEAVLALGDVLSYV-EN-KDKAFSEIRRVLVPDGLLIA 150 (260)
T ss_dssp CTTSCCSC---TTCEEEEEECSSHHHHC-SC-HHHHHHHHHHHEEEEEEEEE
T ss_pred cHHHCCCC---CCCEEEEEEcchhhhcc-cc-HHHHHHHHHHHcCCCeEEEE
Confidence 88876542 36899999842111111 22 56677777889999998874
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.5e-10 Score=112.95 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH--cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc---CCCCc------------
Q 044245 66 KSCHVLDIGAGTGLLSMMAARA--MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN---GMGRN------------ 128 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~--g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n---gl~~~------------ 128 (694)
++.+|||+|||+|.+++.+++. .. ..+|+|+|+|+.|++.|++++..+ ++.++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~----------~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRS----------LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGG----------EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccC----------CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 4679999999999999999987 32 258999999999999999998876 55433
Q ss_pred -------------EE-------------EEecccccccccc--CCCCCccEEEEccccccccC-C-----ChHHHHHHHH
Q 044245 129 -------------IK-------------VINKRSDELEVGV--DIDSRADILVSEILDSELLG-E-----GLIPTLQHAH 174 (694)
Q Consensus 129 -------------I~-------------vi~~~~~~l~~~~--~l~~~~DlIvse~~~~~l~~-e-----~~l~~l~~~~ 174 (694)
|+ ++++|..+..... ...++||+|++++....... + .....++..+
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 8999987642100 01248999999875432211 0 2244566667
Q ss_pred HhccCCCCeEE
Q 044245 175 DRLLVENPLTV 185 (694)
Q Consensus 175 ~~~L~p~G~ii 185 (694)
.++|+|||+++
T Consensus 201 ~~~LkpgG~l~ 211 (250)
T 1o9g_A 201 ASALPAHAVIA 211 (250)
T ss_dssp HHHSCTTCEEE
T ss_pred HHhcCCCcEEE
Confidence 78999999887
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-10 Score=110.68 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=82.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc--cc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE--VG 142 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~--~~ 142 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+|+.++|+++.++..+.. ..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 138 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALP---------ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL 138 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC---------TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHH
Confidence 4678999999999999999998743 136999999999999999999999999889999999986542 10
Q ss_pred c-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 143 V-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
. ...++||+|+++.. ......+.....++|+|||.++-+
T Consensus 139 ~~~~~~~~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 139 AAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCCCCccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 0 00157999998642 122445555566799999988754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=118.41 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=85.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC-CCcEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM-GRNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl-~~~I~vi~~~~~~l~~~~ 143 (694)
.++.+|||+|||+|.+++.+++.|+ .+|+++|+|+.+++.|+++++.||+ .++++++.+|..++....
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~-----------~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~ 287 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGC-----------SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCC-----------CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence 5789999999999999999999875 6999999999999999999999999 668999999987753100
Q ss_pred -CCCCCccEEEEccccccc----cC--CChHHHHHHHHHhccCCCCeEEc
Q 044245 144 -DIDSRADILVSEILDSEL----LG--EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~l----~~--e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||+|++++..... +. ......+.....++|+|||+++-
T Consensus 288 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 337 (396)
T 3c0k_A 288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT 337 (396)
T ss_dssp HHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred HhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 012589999998754211 11 12344455555569999998864
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=110.17 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=80.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|+++. . ..+++++.+|..++...
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~------------~v~gvD~s~~~~~~a~~~~---~-~~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP------------RVIGLDVSKSALEIAAKEN---T-AANISYRLLDGLVPEQA 116 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS------------CEEEEESCHHHHHHHHHHS---C-CTTEEEEECCTTCHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC------------CEEEEECCHHHHHHHHHhC---c-ccCceEEECcccccccc
Confidence 356788999999999999999999875 8999999999999998876 2 23799999999886532
Q ss_pred cCCC--CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDID--SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~--~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+ ..||+|++..+-+.+ .......++..+.++|+|||+++
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~ 160 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMY 160 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEE
T ss_pred cccccccCccEEEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 1111 248999986444333 22245667777778999999865
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=109.50 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|+++... .+++++.++..++..+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~-----------~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~--- 104 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGA-----------SYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLP--- 104 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCC---
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCC-----------CeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCC---
Confidence 678999999999999999998864 4999999999999999876532 3799999998886532
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ .....++..+.++|+|||+++-
T Consensus 105 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~ 142 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYV---EDVARLFRTVHQALSPGGHFVF 142 (243)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCceEEEEecccccc---chHHHHHHHHHHhcCcCcEEEE
Confidence 3689999985322222 2355666777789999998873
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=110.39 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=80.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHH-cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARA-MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~-g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~~~~~l~~ 141 (694)
+.++.+|||+|||+|.++..+++. ++ ..+|+++|.++.+++.|+++++.+ | .++++++.+|..+..+
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~----------~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGE----------KGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAEL 162 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT----------TSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCC
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCC----------CCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCC
Confidence 567899999999999999999998 42 369999999999999999999988 8 4589999999887643
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ .++||+|++++.. ...++..+.++|+|||+++
T Consensus 163 ~---~~~~D~v~~~~~~--------~~~~l~~~~~~L~~gG~l~ 195 (258)
T 2pwy_A 163 E---EAAYDGVALDLME--------PWKVLEKAALALKPDRFLV 195 (258)
T ss_dssp C---TTCEEEEEEESSC--------GGGGHHHHHHHEEEEEEEE
T ss_pred C---CCCcCEEEECCcC--------HHHHHHHHHHhCCCCCEEE
Confidence 2 2579999986432 2234555567899999876
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=108.30 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=81.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--------CCCCcEEEEecc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--------GMGRNIKVINKR 135 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--------gl~~~I~vi~~~ 135 (694)
+.++.+|||||||+|.+++.+++.++ ..+|+|+|+|+.|++.|+++++.+ ++. +++++.+|
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D 115 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFP----------EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGN 115 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHST----------TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCC----------CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEecc
Confidence 45678999999999999999999985 358999999999999999999887 775 89999999
Q ss_pred ccc-cccccCCCCCccEEEEcccccccc-----CCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDE-LEVGVDIDSRADILVSEILDSELL-----GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~-l~~~~~l~~~~DlIvse~~~~~l~-----~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+ +.. ..-.+.+|.|+....+.... .....+.++..+.++|+|||.++-
T Consensus 116 ~~~~l~~-~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 116 AMKFLPN-FFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TTSCGGG-TSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHH-hccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 886 331 01125788887542221100 000114566677789999998765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-10 Score=127.79 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=85.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~ 143 (694)
.++.+|||+|||||.+++.+++.|+ .+|+++|+|+.+++.|++|++.||+. ++++++++|..++..
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga-----------~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~-- 604 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGA-----------RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLR-- 604 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH--
T ss_pred cCCCcEEEeeechhHHHHHHHHCCC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH--
Confidence 4689999999999999999999776 68999999999999999999999997 689999999887421
Q ss_pred CCCCCccEEEEcccccccc------CC--ChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELL------GE--GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~------~e--~~l~~l~~~~~~~L~p~G~ii 185 (694)
...++||+|++++.....- .+ .....+.....++|+|||+++
T Consensus 605 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~ 654 (703)
T 3v97_A 605 EANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIM 654 (703)
T ss_dssp HCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 1236899999988543210 01 123345656667999999988
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=109.25 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=78.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH------cCCCCcEEEEecccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV------NGMGRNIKVINKRSD 137 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~------ngl~~~I~vi~~~~~ 137 (694)
..++.+|||||||+|.+++.+|+..+ ...|+|+|+++.|++.|+++++. +++. +|+++.+|+.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p----------~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~ 112 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFP----------DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAM 112 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGST----------TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCC----------CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHH
Confidence 44567999999999999999998864 46899999999999999988764 4554 8999999988
Q ss_pred c-cc--cccCCCCCccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeEE
Q 044245 138 E-LE--VGVDIDSRADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 138 ~-l~--~~~~l~~~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ ++ ++ ++.+|.|++...+..... .-..+.++..+.++|+|||.++
T Consensus 113 ~~l~~~~~---~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~ 165 (235)
T 3ckk_A 113 KHLPNFFY---KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVY 165 (235)
T ss_dssp TCHHHHCC---TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEE
T ss_pred HhhhhhCC---CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEE
Confidence 6 43 21 267999986422211000 0012457777788999999886
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=108.04 Aligned_cols=113 Identities=11% Similarity=0.150 Sum_probs=79.0
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEE
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM----GRNIKVI 132 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl----~~~I~vi 132 (694)
.+.+...+.++.+|||||||+|.++..+++..+.. -..+..+|+++|.++.+++.|+++++.++. .++++++
T Consensus 75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~----~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAK----GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHS----CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccc----cCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 34443346678999999999999999998864200 000014899999999999999999987762 2479999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+|..+. .+. .++||+|++...... . ...+.+.|+|||+++
T Consensus 151 ~~d~~~~-~~~--~~~fD~I~~~~~~~~-----~----~~~~~~~LkpgG~lv 191 (227)
T 1r18_A 151 EGDGRKG-YPP--NAPYNAIHVGAAAPD-----T----PTELINQLASGGRLI 191 (227)
T ss_dssp ESCGGGC-CGG--GCSEEEEEECSCBSS-----C----CHHHHHTEEEEEEEE
T ss_pred ECCcccC-CCc--CCCccEEEECCchHH-----H----HHHHHHHhcCCCEEE
Confidence 9998762 211 257999998532211 1 144567899999875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.7e-09 Score=103.71 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=77.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +..+|+++|.++.+++.|+++...+++. +++++.++......
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 142 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVG---------EDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYE-- 142 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCG--
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC--
Confidence 45688999999999999999999873 1359999999999999999999988886 69999998754211
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++......+ . +.+.++|+|||+++
T Consensus 143 -~~~~fD~v~~~~~~~~~-----~----~~~~~~L~pgG~lv 174 (215)
T 2yxe_A 143 -PLAPYDRIYTTAAGPKI-----P----EPLIRQLKDGGKLL 174 (215)
T ss_dssp -GGCCEEEEEESSBBSSC-----C----HHHHHTEEEEEEEE
T ss_pred -CCCCeeEEEECCchHHH-----H----HHHHHHcCCCcEEE
Confidence 13579999985332211 1 34567999999875
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=119.23 Aligned_cols=119 Identities=22% Similarity=0.178 Sum_probs=88.5
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.+.....++.+|||+|||+|.+++.+++.|+ .+|+++|+|+.+++.|+++++.|++.++++++.+|..
T Consensus 209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~-----------~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~ 277 (396)
T 2as0_A 209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGA-----------DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF 277 (396)
T ss_dssp HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHhhCCCeEEEecCCCCHHHHHHHHCCC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHH
Confidence 34444444789999999999999999999865 6999999999999999999999999778999999987
Q ss_pred cccccc-CCCCCccEEEEccccccccCC------ChHHHHHHHHHhccCCCCeEEcC
Q 044245 138 ELEVGV-DIDSRADILVSEILDSELLGE------GLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 138 ~l~~~~-~l~~~~DlIvse~~~~~l~~e------~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++.... ...++||+|++++.....-.. .....+.....++|+|||.++-.
T Consensus 278 ~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 334 (396)
T 2as0_A 278 EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 334 (396)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 753110 013589999998754221111 11233445556799999987644
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=108.16 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=82.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV- 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~- 143 (694)
.++.+|||||||+|..+..+++..+ +..+|+++|.++.+++.|+++++.+|+.++|+++.++..+.....
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 129 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALP---------EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLI 129 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSC---------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHH
Confidence 4678999999999999999999853 126999999999999999999999999878999999976531100
Q ss_pred -C---------C--C-CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 -D---------I--D-SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 -~---------l--~-~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
. . . ++||+|+++.. ....+.++..+.++|+|||+++-
T Consensus 130 ~~~~~~~~~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~ 179 (239)
T 2hnk_A 130 DSKSAPSWASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIA 179 (239)
T ss_dssp HCSSCCGGGTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcccccccccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 0 0 1 57999998521 12344556666779999998874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-10 Score=111.51 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=76.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCC-HHHHHHH---HHHHHHcCCCCcEEEEecccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESY-LPMVKLM---KKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s-~~~~~~A---~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
..++.+|||||||+|.++..+++..+ ..+|+|+|+| +.|++.| +++++.++++ ++.++.++.+++
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~----------~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l 90 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQ----------NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESL 90 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCT----------TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBC
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCC----------CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHh
Confidence 45688999999999999999987643 3689999999 7777666 7777778886 799999999887
Q ss_pred ccccCCCCCccEEEEcccccccc---CCChHHHHHHHHHhccCCCCeEEc
Q 044245 140 EVGVDIDSRADILVSEILDSELL---GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~---~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+. .....+|.|.++....... ... .+.++..+.++|+|||+++-
T Consensus 91 ~~--~~~d~v~~i~~~~~~~~~~~~~~~~-~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 91 PF--ELKNIADSISILFPWGTLLEYVIKP-NRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp CG--GGTTCEEEEEEESCCHHHHHHHHTT-CHHHHHHHHTTEEEEEEEEE
T ss_pred hh--hccCeEEEEEEeCCCcHHhhhhhcc-hHHHHHHHHHhcCCCcEEEE
Confidence 42 1123455555432111100 000 13456677889999999875
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=105.41 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=79.0
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
..+.+.+.+.++.+|||||||+|.++..+ +. .+|+++|.|+.|++.|+++. .+++++.++
T Consensus 26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~-----------~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d 85 (211)
T 2gs9_A 26 EERALKGLLPPGESLLEVGAGTGYWLRRL---PY-----------PQKVGVEPSEAMLAVGRRRA------PEATWVRAW 85 (211)
T ss_dssp HHHHHHTTCCCCSEEEEETCTTCHHHHHC---CC-----------SEEEEECCCHHHHHHHHHHC------TTSEEECCC
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHhHHhC---CC-----------CeEEEEeCCHHHHHHHHHhC------CCcEEEEcc
Confidence 34556666667899999999999988776 32 38999999999999998765 378899999
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+++.+ +++||+|++...-.+ -.....++..+.++|+|||.++-
T Consensus 86 ~~~~~~~---~~~fD~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~i 130 (211)
T 2gs9_A 86 GEALPFP---GESFDVVLLFTTLEF---VEDVERVLLEARRVLRPGGALVV 130 (211)
T ss_dssp TTSCCSC---SSCEEEEEEESCTTT---CSCHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCC---CCcEEEEEEcChhhh---cCCHHHHHHHHHHHcCCCCEEEE
Confidence 8887542 368999998532211 12355667777789999998763
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-09 Score=101.70 Aligned_cols=95 Identities=22% Similarity=0.106 Sum_probs=74.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||+|.++..+++.+. .+|+|+|.|+.+++.|+++++.+++ +++++++|..+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--- 110 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-----------KEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--- 110 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---
Confidence 34678999999999999999999865 5899999999999999999998887 7999999988753
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhcc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLL 178 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L 178 (694)
++||+|++++..... ..+....++....+++
T Consensus 111 ---~~~D~v~~~~p~~~~-~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 111 ---SRVDIVIMNPPFGSQ-RKHADRPFLLKAFEIS 141 (207)
T ss_dssp ---CCCSEEEECCCCSSS-STTTTHHHHHHHHHHC
T ss_pred ---CCCCEEEEcCCCccc-cCCchHHHHHHHHHhc
Confidence 489999998764322 2223333444444455
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=111.67 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGM-GRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl-~~~I~vi~~~~~~l~~~ 142 (694)
.+.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++... +++ .++++++.+|..+...
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~- 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS----------VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA- 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT----------CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-
T ss_pred CCCEEEEECCchHHHHHHHHhCCC----------CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-
Confidence 568999999999999999988732 26999999999999999998754 345 3589999999876421
Q ss_pred cCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCc
Q 044245 143 VDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
...++||+|++++.......+.. ...+.....+.|+|||+++-+.
T Consensus 144 -~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 144 -KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp -TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred -hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 12368999999876532211111 2455666678999999987653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=107.67 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=75.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.|+.+++.|+++ ++++.++..++..+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~- 96 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI------------ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKS- 96 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC------------CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHT-
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC------------cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhh-
Confidence 45678999999999999999999864 799999999999998864 77888887765211
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+++||+|++..+-..+ .+..+..++..+.++|+|||.++-
T Consensus 97 ~~~~~fD~i~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 138 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHL-DPERLFELLSLCYSKMKYSSYIVI 138 (240)
T ss_dssp SCTTCBSEEEEESCGGGS-CGGGHHHHHHHHHHHBCTTCCEEE
T ss_pred cCCCCeeEEEECCchhhC-CcHHHHHHHHHHHHHcCCCcEEEE
Confidence 123689999985333222 233456777777889999999874
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-09 Score=111.92 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=87.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..+..+++... +.++|+|+|+++.+++.++++++.+|+. +|+++++|..++..
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~---------~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~-- 183 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMR---------NDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE-- 183 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTT---------TCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc--
Confidence 56788999999999999999998753 1369999999999999999999999986 79999999988653
Q ss_pred CCCCCccEEEEccccc--cccC--CCh---------------HHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 DIDSRADILVSEILDS--ELLG--EGL---------------IPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~--e~~---------------l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
.+++||+|++++.-+ +.+. ... ...++....++|+|||+++-..+++
T Consensus 184 -~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 184 -LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp -GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred -ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 236899999976422 2221 100 1345556667999999987644443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-09 Score=107.44 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=82.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-c
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-V 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~ 143 (694)
.++.+|||||||+|..++.++++.+ +..+|+++|.++.+++.|+++++.+|+.++|+++.++..+.... .
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~ 141 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLP---------PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLT 141 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSC---------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 4578999999999999999998753 13699999999999999999999999988899999997653210 0
Q ss_pred CCC--CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 144 DID--SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 144 ~l~--~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
... ++||+|+++.. ....+.++....++|+|||+++-+
T Consensus 142 ~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 142 QGKPLPEFDLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp TSSSCCCEEEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred hcCCCCCcCEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 001 57999997532 122445556666799999998754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=110.63 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=80.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-C-CCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-G-MGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-g-l~~~I~vi~~~~~~l~~ 141 (694)
+.++.+|||+|||+|.++..++++.. +..+|+++|.++.+++.|+++++.+ | +.++++++.+|..+...
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVG---------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 56788999999999999999998632 1369999999999999999999887 5 55689999999887643
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ +++||+|++++.. ...++..+.++|+|||.++
T Consensus 168 ~---~~~~D~v~~~~~~--------~~~~l~~~~~~L~pgG~l~ 200 (280)
T 1i9g_A 168 P---DGSVDRAVLDMLA--------PWEVLDAVSRLLVAGGVLM 200 (280)
T ss_dssp C---TTCEEEEEEESSC--------GGGGHHHHHHHEEEEEEEE
T ss_pred C---CCceeEEEECCcC--------HHHHHHHHHHhCCCCCEEE
Confidence 2 3579999985432 2234555567899999876
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-09 Score=114.87 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=82.5
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK 134 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~ 134 (694)
.+..++. +.++.+|||+|||+|.+++.+|+.+ .+|+|+|.|+.|++.|+++++.|++. ++++.+
T Consensus 281 l~~~~~~--~~~~~~VLDlgcG~G~~sl~la~~~------------~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~ 344 (425)
T 2jjq_A 281 LVRKVSE--LVEGEKILDMYSGVGTFGIYLAKRG------------FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVA 344 (425)
T ss_dssp HHHHHHH--HCCSSEEEEETCTTTHHHHHHHHTT------------CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEEC
T ss_pred HHHHhhc--cCCCCEEEEeeccchHHHHHHHHcC------------CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC
Confidence 3444444 6678999999999999999999875 49999999999999999999999985 999999
Q ss_pred cccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
|+.++.. .+||+|++++... +..+.+...+. .|+|+|+++-
T Consensus 345 d~~~~~~-----~~fD~Vv~dPPr~-----g~~~~~~~~l~-~l~p~givyv 385 (425)
T 2jjq_A 345 SDREVSV-----KGFDTVIVDPPRA-----GLHPRLVKRLN-REKPGVIVYV 385 (425)
T ss_dssp CTTTCCC-----TTCSEEEECCCTT-----CSCHHHHHHHH-HHCCSEEEEE
T ss_pred ChHHcCc-----cCCCEEEEcCCcc-----chHHHHHHHHH-hcCCCcEEEE
Confidence 9988642 3799999987642 22344455554 4899987653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=110.28 Aligned_cols=95 Identities=21% Similarity=0.206 Sum_probs=74.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++. +++++.++..+++.+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~------------~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~-- 91 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQG------------LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALP-- 91 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTT------------CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSC--
T ss_pred CCCCEEEEEcCcccHHHHHHHhCC------------CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCC--
Confidence 568999999999999999999865 49999999999998876532 799999999887643
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++||+|++..+-.++ ...+.++..+.++|+ ||.++
T Consensus 92 -~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~ 127 (261)
T 3ege_A 92 -DKSVDGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIV 127 (261)
T ss_dssp -TTCBSEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEE
T ss_pred -CCCEeEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEE
Confidence 2689999986433222 235566667778999 99664
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-09 Score=109.48 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=68.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+|+|+++.|++.|+++...++..++++++++|+.+++.
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~------------~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-- 91 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAK------------KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 91 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS------------EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCC------------EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--
Confidence 45678999999999999999999874 9999999999999999998877776689999999987653
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
..||+|++++..+
T Consensus 92 ---~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 92 ---PFFDTCVANLPYQ 104 (285)
T ss_dssp ---CCCSEEEEECCGG
T ss_pred ---hhhcEEEEecCcc
Confidence 3699999986553
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-09 Score=112.95 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc-cccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE-LEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~-l~~~~~ 144 (694)
++.+|||+| |+|.+++.+++.++ ..+|+++|+++.|++.|+++++.+|+. +|+++.+|+.+ ++. .
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~----------~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~--~ 237 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGL----------PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPD--Y 237 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTC----------CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCT--T
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchh--h
Confidence 578999999 99999999999874 369999999999999999999999997 89999999987 431 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
..++||+|++++..... + ...++....+.|+|||++
T Consensus 238 ~~~~fD~Vi~~~p~~~~---~-~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 238 ALHKFDTFITDPPETLE---A-IRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp TSSCBSEEEECCCSSHH---H-HHHHHHHHHHTBCSTTCE
T ss_pred ccCCccEEEECCCCchH---H-HHHHHHHHHHHcccCCeE
Confidence 23589999998643211 1 355666667799999953
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=116.51 Aligned_cols=104 Identities=8% Similarity=0.040 Sum_probs=81.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN-IKVINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~-I~vi~~~~~~l~~~~ 143 (694)
.++.+|||++||+|.+++.+++... ++.+|+++|+|+.+++.+++|++.||++++ ++++++|..++...
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~---------ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~- 120 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETS---------CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK- 120 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCS---------CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS-
T ss_pred CCCCEEEECCCcccHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH-
Confidence 3578999999999999999998632 126899999999999999999999999877 99999998775310
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...++||+|+.++.+. ...+.....++|++||+++
T Consensus 121 ~~~~~fD~V~lDP~g~-------~~~~l~~a~~~Lk~gGll~ 155 (392)
T 3axs_A 121 EWGFGFDYVDLDPFGT-------PVPFIESVALSMKRGGILS 155 (392)
T ss_dssp CCSSCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEE
T ss_pred hhCCCCcEEEECCCcC-------HHHHHHHHHHHhCCCCEEE
Confidence 1246899999998431 2234444455789998664
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=115.66 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=82.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGM-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl-~~~I~vi~~~~~~l~~ 141 (694)
.++.+|||||||+|.++..+++..+ ..+|+++|+|+.+++.|++++.. +++ .++++++.+|..+...
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~ 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS----------VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT----------CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC----------CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh
Confidence 4568999999999999999987632 36999999999999999998765 344 3589999999876421
Q ss_pred ccCCCCCccEEEEccccccccCCChH-HHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLI-PTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l-~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+++||+|+++..+.....+... ..+.....+.|+|||+++-.
T Consensus 185 --~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 185 --NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp --HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 123689999998643221111111 55666777899999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=114.99 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=80.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||+|.+++.+++.+. ..+|+|+|+|+.|++.|+++++.+|+.++|+++++|..++..+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~----------~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~- 283 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY----------SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY- 283 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC----------CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT-
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC----------CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc-
Confidence 56688999999999999999999874 2489999999999999999999999988999999999987642
Q ss_pred CCCCCccEEEEccccccccCC-Ch----HHHHHHHHHhcc
Q 044245 144 DIDSRADILVSEILDSELLGE-GL----IPTLQHAHDRLL 178 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e-~~----l~~l~~~~~~~L 178 (694)
.++||+|++++....-+++ .. ...+...+.+.|
T Consensus 284 --~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 284 --VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp --CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred --cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 2689999999865443332 11 245556666666
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=110.65 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=79.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-GMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-gl~~~I~vi~~~~~~l~~~ 142 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.++.+++.|+++++.+ |. ++++++.+|..+. .+
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~-~~ 176 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALN---------GKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADF-IS 176 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHT---------TSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTC-CC
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhcc-Cc
Confidence 45678999999999999999998821 1369999999999999999999988 85 4899999998772 21
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++++.. ...++..+.++|+|||+++-
T Consensus 177 ---~~~fD~Vi~~~~~--------~~~~l~~~~~~LkpgG~l~i 209 (275)
T 1yb2_A 177 ---DQMYDAVIADIPD--------PWNHVQKIASMMKPGSVATF 209 (275)
T ss_dssp ---SCCEEEEEECCSC--------GGGSHHHHHHTEEEEEEEEE
T ss_pred ---CCCccEEEEcCcC--------HHHHHHHHHHHcCCCCEEEE
Confidence 2579999985322 23455556679999998763
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=112.01 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=80.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC--------CCcEEEEec
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM--------GRNIKVINK 134 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl--------~~~I~vi~~ 134 (694)
.++.+|||||||+|.++..+++.+. .+|+++|+++.+++.|++++ .. ++ ..+++++.+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~-----------~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~ 141 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV-----------DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIG 141 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC-----------SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEES
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC-----------CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEEC
Confidence 4578999999999999999988732 69999999999999999987 33 33 458999999
Q ss_pred cccccccccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
|..+... . +++||+|+++........+.. ...+...+.++|+|||+++-+.
T Consensus 142 D~~~~l~--~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 142 DGFEFIK--N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CHHHHHH--H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHHHhc--c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9876421 1 468999999876432111221 2456666678999999987663
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-09 Score=107.57 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=78.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..+|+++|.|+.|++.|+++ . .+++++.++..++. +
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~----------~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~-~- 92 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYG----------VNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWK-P- 92 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHC----------TTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCC-C-
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCC----------CCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcC-c-
Confidence 45678999999999999999999853 25899999999999999876 2 37899999998865 2
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ .....++..+.++|+|||.++-
T Consensus 93 --~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~ 130 (259)
T 2p35_A 93 --AQKADLLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAV 130 (259)
T ss_dssp --SSCEEEEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEE
T ss_pred --cCCcCEEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEE
Confidence 3689999985433222 2356677777889999998864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=113.56 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGM-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl-~~~I~vi~~~~~~l~~ 141 (694)
.++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++.. +++ ..+++++.+|..+...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~ 163 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS----------VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC----------CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh
Confidence 4568999999999999999998753 36999999999999999998765 455 4689999999876321
Q ss_pred ccCCCCCccEEEEccccccccCCC-hHHHHHHHHHhccCCCCeEEcCc
Q 044245 142 GVDIDSRADILVSEILDSELLGEG-LIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+++||+|+++........+. ....+...+.++|+|||+++-+.
T Consensus 164 --~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 164 --QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp --TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred --hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 1246899999976543211111 12345666678999999987543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-09 Score=104.32 Aligned_cols=95 Identities=23% Similarity=0.219 Sum_probs=75.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+++|.++.+++.|+++...++ +++++.++..+...
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~-- 130 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIVD------------KVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE-- 130 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS------------EEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG--
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHcC------------EEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccc--
Confidence 45678999999999999999999874 99999999999999999987766 79999999876221
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..++||+|++...-.. .. ..+.++|+|||+++
T Consensus 131 -~~~~fD~v~~~~~~~~-----~~----~~~~~~L~pgG~l~ 162 (231)
T 1vbf_A 131 -EEKPYDRVVVWATAPT-----LL----CKPYEQLKEGGIMI 162 (231)
T ss_dssp -GGCCEEEEEESSBBSS-----CC----HHHHHTEEEEEEEE
T ss_pred -cCCCccEEEECCcHHH-----HH----HHHHHHcCCCcEEE
Confidence 1368999998532221 11 24566999999876
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=113.88 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=80.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl-~~~I~vi~~~~~~l~~ 141 (694)
..+.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++... ++ .++++++.+|..+...
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~----------~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~ 176 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES----------VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK 176 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----------CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC----------CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH
Confidence 4568999999999999999988742 369999999999999999987653 44 4689999999876421
Q ss_pred ccCCCCCccEEEEccccccccCCChH-HHHHHHHHhccCCCCeEEcCc
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLI-PTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l-~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+++||+|+++........+... ..+...+.++|+|||+++-+.
T Consensus 177 --~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 177 --NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp --HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred --hcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 123689999998654321112222 456667778999999998654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=113.90 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=77.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-------cCC---CCcEEEEe
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-------NGM---GRNIKVIN 133 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-------ngl---~~~I~vi~ 133 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.++.+++.|+++++. |++ .++|+++.
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVG---------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhC---------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 56789999999999999999999842 136999999999999999999985 333 35899999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|..+...+ ...++||+|++++... ..++..+.+.|+|||.++
T Consensus 174 ~d~~~~~~~-~~~~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv 216 (336)
T 2b25_A 174 KDISGATED-IKSLTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCA 216 (336)
T ss_dssp SCTTCCC--------EEEEEECSSST--------TTTHHHHGGGEEEEEEEE
T ss_pred CChHHcccc-cCCCCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEE
Confidence 998875311 0125799999864331 124455677999999987
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-09 Score=101.45 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+. +|+++|.++.+++.|+++ ..+++++.++ ++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~-- 71 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT------------KLYCIDINVIALKEVKEK------FDSVITLSDP---KEI-- 71 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE------------EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGS--
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC------------eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCC--
Confidence 45678999999999999999998873 899999999999999887 2479999888 322
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..++||+|++...-..+ .....++..+.+.|+|||+++-
T Consensus 72 -~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~ 110 (170)
T 3i9f_A 72 -PDNSVDFILFANSFHDM---DDKQHVISEVKRILKDDGRVII 110 (170)
T ss_dssp -CTTCEEEEEEESCSTTC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCceEEEEEccchhcc---cCHHHHHHHHHHhcCCCCEEEE
Confidence 23689999985333222 2355666777789999998874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=110.91 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=80.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGM-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl-~~~I~vi~~~~~~l~~ 141 (694)
..+.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++.. +++ .++++++.+|..+...
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 158 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS----------VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR 158 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----------CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC----------CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence 3568999999999999999998732 36999999999999999998764 444 3589999999876421
Q ss_pred ccCCCCCccEEEEccccc-cccCCC-hHHHHHHHHHhccCCCCeEEcCc
Q 044245 142 GVDIDSRADILVSEILDS-ELLGEG-LIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~-~l~~e~-~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..+++||+|++++... ....+. ....+...+.++|+|||+++-..
T Consensus 159 --~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 159 --KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp --GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred --hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 1236899999986542 111111 12456666778999999988653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-10 Score=113.57 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=79.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC-------------------
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM------------------- 125 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl------------------- 125 (694)
.++.+|||||||+|.++..+++.+. .+|+++|.|+.|++.|++++..++.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-----------TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRM 123 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-----------EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCS
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-----------CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccccccc
Confidence 4568999999999999999888764 5899999999999999988765431
Q ss_pred ---------CCcE-EEEecccccccc-ccCCCCCccEEEEccccccccCC-ChHHHHHHHHHhccCCCCeEEc
Q 044245 126 ---------GRNI-KVINKRSDELEV-GVDIDSRADILVSEILDSELLGE-GLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 126 ---------~~~I-~vi~~~~~~l~~-~~~l~~~~DlIvse~~~~~l~~e-~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++| +++.++..+... +....++||+|++...-..+... .....++..+.++|+|||.++-
T Consensus 124 ~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 196 (265)
T 2i62_A 124 KGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM 196 (265)
T ss_dssp CHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred chHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence 1138 899999887542 11112689999985322211111 1345566677789999998864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=113.10 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=84.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GM-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl-~~~I~vi~~~~~~l~~ 141 (694)
.++.+|||||||+|.++..+++..+ ..+|+++|+|+.+++.|++++... ++ ..+|+++.+|..+...
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~----------~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~ 188 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS----------IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK 188 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC----------CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH
Confidence 4568999999999999999998743 369999999999999999988652 55 3589999999876421
Q ss_pred ccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCce
Q 044245 142 GVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
....++||+|+++........++. ...+...+.++|+|||+++-+..
T Consensus 189 -~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 189 -NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp -TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred -hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 001368999999765322211221 35566677789999999986533
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-09 Score=103.34 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=75.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ .+|+++|.++.+++.|+++.+.+++. +++++.++.. ...+.
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~-~~~~~ 155 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK-----------TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGS-KGFPP 155 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC-----------SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG-GCCGG
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC-----------CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcc-cCCCC
Confidence 45688999999999999999999874 48999999999999999999999986 5999999872 22211
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..+||+|++...-. ... ..+.+.|+|||+++
T Consensus 156 --~~~fD~Ii~~~~~~-----~~~----~~~~~~L~pgG~lv 186 (235)
T 1jg1_A 156 --KAPYDVIIVTAGAP-----KIP----EPLIEQLKIGGKLI 186 (235)
T ss_dssp --GCCEEEEEECSBBS-----SCC----HHHHHTEEEEEEEE
T ss_pred --CCCccEEEECCcHH-----HHH----HHHHHhcCCCcEEE
Confidence 23599999853221 112 24456899999875
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=111.01 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=80.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH---cCCCCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV---NGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~---ngl~~~I~vi~~~~~~l~~ 141 (694)
.++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++.. .....+++++.+|..++..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 163 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT----------VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC----------CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH
Confidence 4578999999999999999988742 36999999999999999998742 2223589999999887642
Q ss_pred ccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~ 187 (694)
. ..+++||+|+++........+.. -..+...+.+.|+|||+++-.
T Consensus 164 ~-~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 164 Q-TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp S-SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred h-ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1 02368999999765432211111 145666777899999998754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.3e-09 Score=108.62 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=76.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+ .+|+|+|.|+.|++.|+++. .+++++.++..+++.
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~------------~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-- 114 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSG------------AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV-- 114 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT------------CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC--
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCC------------CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc--
Confidence 3467899999999999999999854 49999999999999998754 368899999988653
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-..+ ...+.++..+.++|+|||.++-
T Consensus 115 --~~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~ 152 (279)
T 3ccf_A 115 --DKPLDAVFSNAMLHWV---KEPEAAIASIHQALKSGGRFVA 152 (279)
T ss_dssp --SSCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCCcCEEEEcchhhhC---cCHHHHHHHHHHhcCCCcEEEE
Confidence 3689999985332222 2355666777789999998863
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=109.00 Aligned_cols=118 Identities=19% Similarity=0.098 Sum_probs=87.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..+..+++... +..+|+|+|.++.+++.++++++.+|+. +++++++|..++....
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~---------~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMK---------NKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYL 150 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTT---------TCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHH
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcC---------CCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhh
Confidence 45789999999999999999998643 1269999999999999999999999987 8999999988764210
Q ss_pred -CCCCCccEEEEcccccc--ccCC-------------ChHHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 -DIDSRADILVSEILDSE--LLGE-------------GLIPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 -~l~~~~DlIvse~~~~~--l~~e-------------~~l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
...++||+|++++.-+. .+.. .....++....++|+|||+++-..+++
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 01368999999854332 1110 123455666667999999987654444
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=108.36 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=82.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..++++.+ ..+++++|. +.+++.|++++...++.++|+++.+|..+ +
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~---- 264 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFP----------GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-T---- 264 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-C----
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCC----------CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-C----
Confidence 3468999999999999999999864 468999999 99999999999999998899999999873 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+..||+|++..+-+.. .+.....++..+.+.|+|||+++-
T Consensus 265 ~p~~~D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i 305 (369)
T 3gwz_A 265 IPDGADVYLIKHVLHDW-DDDDVVRILRRIATAMKPDSRLLV 305 (369)
T ss_dssp CCSSCSEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCCceEEEhhhhhccC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 23479999884322211 121223566777789999998863
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=114.44 Aligned_cols=104 Identities=25% Similarity=0.243 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++.++ ..+|+++|.|+.|++.|+++++.+++. ++++.+|..+..
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~----------~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~----- 258 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSP----------KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV----- 258 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCT----------TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-----
T ss_pred CCCeEEEecCccCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-----
Confidence 467999999999999999999975 358999999999999999999999885 566788876532
Q ss_pred CCCccEEEEcccccccc--CCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELL--GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~--~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++++..+... .......++....++|+|||.++-
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 36899999976543211 112245677777889999998763
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=115.22 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-C
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV-D 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~-~ 144 (694)
++.+|||+|||+|.+++.+++.+ .+|+++|+|+.+++.|+++++.||+.+ ++++.+|+.++.... .
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~------------~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~ 275 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF------------REVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEK 275 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE------------EEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHhC------------CEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHh
Confidence 68899999999999999999984 599999999999999999999999974 999999987753210 0
Q ss_pred CCCCccEEEEccccccccCCC------hHHHHHHHHHhccCCCCeEEcCc
Q 044245 145 IDSRADILVSEILDSELLGEG------LIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~------~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..++||+|++++.....-... ....+.....++|+|||.++-..
T Consensus 276 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 276 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 135899999987543221111 12334555567999999886543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-09 Score=104.02 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=73.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc-
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV- 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~- 143 (694)
.++.+|||||||+|.++..+++.+. +|+++|.++.|++.|+++ .++.++..+..++....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~------------~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~ 111 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI------------EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV 111 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC------------EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC------------EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc
Confidence 3578999999999999999998864 899999999999999875 25677788877762111
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...++||+|++...- .......++..+.++|+|||+++-
T Consensus 112 ~~~~~fD~v~~~~~l----~~~~~~~~l~~~~~~L~pgG~l~~ 150 (227)
T 3e8s_A 112 PVGKDYDLICANFAL----LHQDIIELLSAMRTLLVPGGALVI 150 (227)
T ss_dssp CCCCCEEEEEEESCC----CSSCCHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCCccEEEECchh----hhhhHHHHHHHHHHHhCCCeEEEE
Confidence 122469999985322 223344566667789999998873
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-09 Score=108.52 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=74.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH----HHcCCCCcEEEEecccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL----HVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~----~~ngl~~~I~vi~~~~~~l 139 (694)
+.++.+|||||||+|.++..+++.++ ..+|+|+|.|+.|++.+.+.+ +.++++ +++++++|..++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p----------~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l 93 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP----------SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL 93 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT----------TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC
Confidence 45688999999999999999999863 369999999999888543333 345664 899999999987
Q ss_pred ccccCCCCCccEEEEccccccccCCCh---HHHHHHHHHhccCCCCeEEc
Q 044245 140 EVGVDIDSRADILVSEILDSELLGEGL---IPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~~e~~---l~~l~~~~~~~L~p~G~iiP 186 (694)
+... +. |.++.... .....+.. .+.++..+.++|+|||+++-
T Consensus 94 ~~~~---~~-d~v~~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 94 PPLS---GV-GELHVLMP-WGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp CSCC---CE-EEEEEESC-CHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred CCCC---CC-CEEEEEcc-chhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 6432 33 66553211 11100001 14566667789999998875
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=109.90 Aligned_cols=109 Identities=11% Similarity=0.155 Sum_probs=81.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||||||+|.++..+++..+ ..+|++||+++.+++.|+++...+. ..+++++.+|..++... ...+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p----------~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~-~~~~ 158 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP----------QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAES-FTPA 158 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST----------TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHT-CCTT
T ss_pred CEEEEEECCcCHHHHHHHHHCC----------CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhh-ccCC
Confidence 3999999999999999999653 3589999999999999999875433 35899999998775311 1136
Q ss_pred CccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCc
Q 044245 148 RADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
+||+|+++.+......+.. ...+...+++.|+|||+++-+.
T Consensus 159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 8999999865543222111 2456667778999999997554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-09 Score=112.76 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc---------------CCCCcEE
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN---------------GMGRNIK 130 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n---------------gl~~~I~ 130 (694)
++.+|||+|||+|.+++.+++..+ ..+|+++|+++.+++.|++|++.| |+. +++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~----------~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~ 115 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP----------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIV 115 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS----------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEE
T ss_pred CCCEEEECCCchhHHHHHHHHhCC----------CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceE
Confidence 688999999999999999999843 258999999999999999999999 886 499
Q ss_pred EEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 131 VINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++++|..++.. ...++||+|+.+++++ ...+++...+.|++||+++-
T Consensus 116 v~~~Da~~~~~--~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 116 INHDDANRLMA--ERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp EEESCHHHHHH--HSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEE
T ss_pred EEcCcHHHHHH--hccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEE
Confidence 99999877642 1235799999887653 23444444557899987643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.7e-09 Score=103.53 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH----cCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARA----MGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~----g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
++.+|||||||+|..+..+++. ++ ..+|+++|.++.|++.|+ ++.++|+++++|..+...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~----------~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~ 144 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGI----------DCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTT 144 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTC----------CCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCC----------CCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHH
Confidence 5689999999999999999987 32 369999999999998887 234689999999987410
Q ss_pred ccCCC-CCccEEEEccccccccCCChHHHHHHHHHh-ccCCCCeEEcCce
Q 044245 142 GVDID-SRADILVSEILDSELLGEGLIPTLQHAHDR-LLVENPLTVPCRV 189 (694)
Q Consensus 142 ~~~l~-~~~DlIvse~~~~~l~~e~~l~~l~~~~~~-~L~p~G~iiP~~~ 189 (694)
-.... .+||+|+++.. +. ..+.++..+.+ +|+|||+++-...
T Consensus 145 l~~~~~~~fD~I~~d~~-----~~-~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 145 FEHLREMAHPLIFIDNA-----HA-NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp GGGGSSSCSSEEEEESS-----CS-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred HHhhccCCCCEEEECCc-----hH-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 00112 36999997532 22 34555666665 9999999986544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-08 Score=105.36 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=80.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|||||||+|.++..++++.+ ..+++++|. +.+++.|++++...++.++|+++.+|..+ + .+
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~----~p 233 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHE----------DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-P----LP 233 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C----CC
T ss_pred CCEEEEeCCChhHHHHHHHHHCC----------CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-C----CC
Confidence 57999999999999999999875 468999999 99999999999999998899999999863 2 23
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..||+|++..+-+.. .+.....++..+.+.|+|||+++
T Consensus 234 ~~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~ 271 (332)
T 3i53_A 234 AGAGGYVLSAVLHDW-DDLSAVAILRRCAEAAGSGGVVL 271 (332)
T ss_dssp CSCSEEEEESCGGGS-CHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCcEEEEehhhccC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 479999984322111 12223556667778999999886
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.8e-08 Score=101.45 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=79.4
Q ss_pred CCEEEEEcCCC---CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 67 SCHVLDIGAGT---GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 67 ~~~VLDiG~Gt---G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
..+|||||||+ |.++..+++..+ ..+|+++|.|+.|++.|++++.. .++++++.+|+.+....
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p----------~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~ 144 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNP----------DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYIL 144 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCT----------TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCC----------CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhh
Confidence 37999999999 988877777653 36999999999999999988743 24899999999764210
Q ss_pred ------cCCC-CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 143 ------VDID-SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ------~~l~-~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..++ .++|+|++..+-+++-.+ ....++..+.+.|+|||.++-.
T Consensus 145 ~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 145 NHPDVRRMIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp HSHHHHHHCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred ccchhhccCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 0011 479999986544444333 4666777778899999998743
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-09 Score=109.58 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=84.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cC-C-CCcEEEEeccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NG-M-GRNIKVINKRSDELE 140 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ng-l-~~~I~vi~~~~~~l~ 140 (694)
.++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++... .+ + ..+++++.+|..+..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l 145 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT----------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL 145 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC----------CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHH
Confidence 4568999999999999999988742 36999999999999999998764 22 3 458999999987742
Q ss_pred cccCCCCCccEEEEcccccc---ccCCCh-HHHHHHHHHhccCCCCeEEcCceEE
Q 044245 141 VGVDIDSRADILVSEILDSE---LLGEGL-IPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~---l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
. ..+++||+|+++..... ...+.. ...+...+.++|+|||+++-+....
T Consensus 146 ~--~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 198 (314)
T 1uir_A 146 E--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (314)
T ss_dssp H--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred H--hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 1 12468999999865532 100111 3456667778999999998765443
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-09 Score=108.36 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-----------------CCC--
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-----------------GMG-- 126 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-----------------gl~-- 126 (694)
++.+|||||||+|.++..+++... .+|+|+|+|+.|++.|+++++.. +..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF-----------EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 139 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC-----------SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred CCCeEEEECCCcChHHHHhhccCC-----------CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccc
Confidence 578999999999997766665433 59999999999999998865421 111
Q ss_pred ----------CcEEEEeccccc-ccccc--CCCCCccEEEEccccccccCCC--hHHHHHHHHHhccCCCCeEEcC
Q 044245 127 ----------RNIKVINKRSDE-LEVGV--DIDSRADILVSEILDSELLGEG--LIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 127 ----------~~I~vi~~~~~~-l~~~~--~l~~~~DlIvse~~~~~l~~e~--~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..++++.+|+.+ ++++. ..+++||+|++...-..+ ... ....++..+.++|+|||+++-.
T Consensus 140 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 140 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV-SPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH-CSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhh-cCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 025677778876 43321 112569999996433222 122 3456677778899999998764
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=106.49 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=63.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.|+++++.+++ ++++++.+|+.++..
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~------------~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-- 104 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLA------------KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-- 104 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTS------------SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcC------------CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--
Confidence 4567899999999999999999875 4999999999999999999988887 489999999987653
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
++||+|++++..+
T Consensus 105 ---~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 105 ---PKFDVCTANIPYK 117 (299)
T ss_dssp ---CCCSEEEEECCGG
T ss_pred ---ccCCEEEEcCCcc
Confidence 4799999986553
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=115.87 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=79.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc------CCCCcEEEEeccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN------GMGRNIKVINKRSDE 138 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n------gl~~~I~vi~~~~~~ 138 (694)
.++.+|||||||+|.++..+++.++ +..+|+|+|+|+.|++.|+++++.. ++. +|+++++|..+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~---------p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~d 789 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPT---------SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSILE 789 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCC---------CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTTS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchHh
Confidence 3688999999999999999999873 1259999999999999999877642 554 89999999998
Q ss_pred cccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 139 LEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.. .++||+|++.-+-.+ +.+.....++..+.++|+|| .++
T Consensus 790 Lp~~---d~sFDlVV~~eVLeH-L~dp~l~~~L~eI~RvLKPG-~LI 831 (950)
T 3htx_A 790 FDSR---LHDVDIGTCLEVIEH-MEEDQACEFGEKVLSLFHPK-LLI 831 (950)
T ss_dssp CCTT---SCSCCEEEEESCGGG-SCHHHHHHHHHHHHHTTCCS-EEE
T ss_pred CCcc---cCCeeEEEEeCchhh-CChHHHHHHHHHHHHHcCCC-EEE
Confidence 7642 368999998422211 12223345666777899999 443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5e-09 Score=108.65 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=82.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~ 141 (694)
.++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++...++ + ..+++++.+|..+...
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~----------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 146 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS----------VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE 146 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----------CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC----------CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH
Confidence 4568999999999999999987743 3699999999999999999876432 2 3589999999876431
Q ss_pred ccCCCCCccEEEEccccccccCCChH-HHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLI-PTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l-~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+++||+|+++........+... ..+.....+.|+|||+++-+
T Consensus 147 --~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 147 --NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp --HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 124689999997654322112221 46666777899999998754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=109.07 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=82.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
....+|||||||+|.++..++++.+ ..+++++|. +.+++.|++++...++.++|+++.+|..+... .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK----------EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV--P 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST----------TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC--C
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC----------CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC--C
Confidence 3568999999999999999999875 468999999 99999999999988888899999999887420 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++.||+|++..+-+.. .+.....++..+.+.|+|||+++
T Consensus 245 ~p~~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~ 284 (363)
T 3dp7_A 245 FPTGFDAVWMSQFLDCF-SEEEVISILTRVAQSIGKDSKVY 284 (363)
T ss_dssp CCCCCSEEEEESCSTTS-CHHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCcCEEEEechhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 23689999984322111 12223356666778999999886
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-08 Score=107.39 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=80.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++.++ ..+++++|. +.+++.|+++++.+++.++|+++.+|+.+ .
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---- 245 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAP----------HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P---- 245 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C----
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCC----------CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C----
Confidence 4568999999999999999999875 468999999 99999999999999998899999999865 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++..||+|++..+-+.. .+.....++..+.+.|+|||+++
T Consensus 246 ~~~~~D~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~ 285 (360)
T 1tw3_A 246 LPRKADAIILSFVLLNW-PDHDAVRILTRCAEALEPGGRIL 285 (360)
T ss_dssp CSSCEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCccEEEEcccccCC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 23469999874322211 11122356666778999999876
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.4e-09 Score=106.09 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+... +|.+|||+||| |.+++.||+.| +++|+|+|- ++.|.++++++++.||++ ++|++++++..++..
T Consensus 118 ri~~~~~--~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~--np~a~~~~~~N~~~N~v~-~~v~~~~~D~~~~~~-- 189 (278)
T 3k6r_A 118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEK--DPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG-- 189 (278)
T ss_dssp HHHHHCC--TTCEEEETTCTTTTTTHHHHHHT-CCEEEEECC--CHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC--
T ss_pred HHHHhcC--CCCEEEEecCcCcHHHHHHHHhc-CCeEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEeCcHHHhcc--
Confidence 3444443 68899999999 99999999996 889999999 899999999999999998 999999998776542
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
..++|.||.-+
T Consensus 190 --~~~~D~Vi~~~ 200 (278)
T 3k6r_A 190 --ENIADRILMGY 200 (278)
T ss_dssp --CSCEEEEEECC
T ss_pred --ccCCCEEEECC
Confidence 36799888764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-09 Score=115.73 Aligned_cols=115 Identities=20% Similarity=0.133 Sum_probs=87.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+|+... +.++|+|+|+++.+++.++++++.+|+. |.++++|..++..
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~---------~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~-- 165 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMG---------GKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE-- 165 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTT---------TCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH--
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh--
Confidence 45789999999999999999998754 2369999999999999999999999996 9999999887641
Q ss_pred CCCCCccEEEEccccc--cccC--CCh---------------HHHHHHHHHhccCCCCeEEcCceEE
Q 044245 144 DIDSRADILVSEILDS--ELLG--EGL---------------IPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~--e~~---------------l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
..+++||+|++++.-+ +.+. ... ...++....++|+|||+++=..+++
T Consensus 166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1246899999876432 2211 111 1345566667999999998544443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=107.18 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=82.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+.+|||||||+|.++..++++.+ ..+++++|. +.+++.|++++...++.++|+++.+|..+... ..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 246 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHP----------QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN--FEG 246 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCT----------TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG--GTT
T ss_pred CCEEEEeCCCcCHHHHHHHHhCC----------CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc--cCC
Confidence 78999999999999999999875 468999999 89999999999999998899999999887541 123
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.||+|++..+-+.. .+.....++..+.+.|+|||+++
T Consensus 247 ~~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~ 284 (352)
T 3mcz_A 247 GAADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALL 284 (352)
T ss_dssp CCEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 579999984322211 22223566667778999999886
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=95.83 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+.+.....++.+|||+|||+|.+++.+++.+ +|+|+|+|+.|++. ..+++++++|.
T Consensus 14 ~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-------------~v~gvD~s~~~~~~----------~~~~~~~~~d~ 70 (170)
T 3q87_B 14 MDALEREGLEMKIVLDLGTSTGVITEQLRKRN-------------TVVSTDLNIRALES----------HRGGNLVRADL 70 (170)
T ss_dssp HHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-------------EEEEEESCHHHHHT----------CSSSCEEECST
T ss_pred HHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-------------cEEEEECCHHHHhc----------ccCCeEEECCh
Confidence 33343333567899999999999999988752 89999999999877 34788999998
Q ss_pred cccccccCCCCCccEEEEcccccccc-------CCChHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELL-------GEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~-------~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+. .. +++||+|++++.....- ++.....+....+ .| |||+++
T Consensus 71 ~~~-~~---~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-pgG~l~ 120 (170)
T 3q87_B 71 LCS-IN---QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVD-AV-TVGMLY 120 (170)
T ss_dssp TTT-BC---GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHH-HC-CSSEEE
T ss_pred hhh-cc---cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHh-hC-CCCEEE
Confidence 773 21 26899999986543211 1112334444444 44 999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=106.63 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=82.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++..+ ..+++++|.+ .+++.|++++..+++.++|+++.+|..+...
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--- 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP----------NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY--- 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT----------TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC----------CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---
Confidence 5678999999999999999999864 3599999999 9999999999999998899999999887543
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.||+|++..+-+.. .+.....++..+.+.|+|||+++
T Consensus 230 -~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~ 268 (335)
T 2r3s_A 230 -GNDYDLVLLPNFLHHF-DVATCEQLLRKIKTALAVEGKVI 268 (335)
T ss_dssp -CSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -CCCCcEEEEcchhccC-CHHHHHHHHHHHHHhCCCCcEEE
Confidence 3459999984222111 11233456667778999999765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=106.50 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=82.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||||||+|.++..++++.+ ..+++++|. +.+++.|+++++.+++.++|+++.+|..+.+.
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 254 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFP----------ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 254 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCT----------TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC--
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCC----------CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC--
Confidence 34578999999999999999999864 369999999 99999999999999998889999999887643
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...|+|++..+-... .+.....++..+.+.|+|||+++
T Consensus 255 ---~~~D~v~~~~vlh~~-~d~~~~~~l~~~~~~L~pgG~l~ 292 (359)
T 1x19_A 255 ---PEADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLL 292 (359)
T ss_dssp ---CCCSEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEE
T ss_pred ---CCCCEEEEechhccC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 234999884322211 12224566777778999999885
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.5e-09 Score=113.36 Aligned_cols=117 Identities=20% Similarity=0.174 Sum_probs=87.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+|+... +.++|+|+|+++.+++.++++++.+|+. +|.++++|..++..
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~---------~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~-- 170 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMK---------GKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVP-- 170 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT---------TCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHH--
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhh--
Confidence 45789999999999999999998753 1369999999999999999999999997 79999999887641
Q ss_pred CCCCCccEEEEccccc--cccCC----------Ch-------HHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLGE----------GL-------IPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~e----------~~-------l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
..+++||+|++++.-+ +.+.. .. ...++....++|+|||+++=..+++.
T Consensus 171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 1246899999986422 22111 11 11445555679999999985555443
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=108.91 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=81.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..+++..+ ..+++++|. +.+++.|++++..+++.++|+++.+|..+ .
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---- 244 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAP----------HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P---- 244 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C----
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC----------CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c----
Confidence 3568999999999999999999874 368999999 99999999999999998899999999865 2
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++..||+|++..+-+.. .+.....++..+.+.|+|||+++-
T Consensus 245 ~~~~~D~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i 285 (374)
T 1qzz_A 245 LPVTADVVLLSFVLLNW-SDEDALTILRGCVRALEPGGRLLV 285 (374)
T ss_dssp CSCCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCEEEEeccccCC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 23459999985332211 111223566667789999997763
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=106.05 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=82.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCcc-----------------------------CCCccEEEEEcCCHHHHH
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTS-----------------------------LNTKGMVTACESYLPMVK 114 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~-----------------------------~~~~~~V~avE~s~~~~~ 114 (694)
..++..|||.+||||.+++.+|..+... .... .....+|+|+|+|+.|++
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~i-apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~ 270 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNI-APGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE 270 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTC-CTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCc-CCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence 3467899999999999999999876510 0000 001246999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCC-ChHHHHHHHHHhccCC
Q 044245 115 LMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGE-GLIPTLQHAHDRLLVE 180 (694)
Q Consensus 115 ~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e-~~l~~l~~~~~~~L~p 180 (694)
.|++|++.+|+.++|+++++|+.++.. +.+||+||+|+....-+++ ..+..+...+.+.|++
T Consensus 271 ~Ar~Na~~~gl~~~I~~~~~D~~~l~~----~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 271 IARKNAREVGLEDVVKLKQMRLQDFKT----NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp HHHHHHHHTTCTTTEEEEECCGGGCCC----CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCceEEEECChHHCCc----cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 999999999999899999999998753 2589999999876544443 2344444445555654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=109.16 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 044245 56 YRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR 135 (694)
Q Consensus 56 y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~ 135 (694)
+..++...-..+.+|||+|||+|.+++.+|+.+ .+|+|+|.|+.|++.|++|++.||+. +++++.+|
T Consensus 203 ~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~------------~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d 269 (369)
T 3bt7_A 203 LEWALDVTKGSKGDLLELYCGNGNFSLALARNF------------DRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMA 269 (369)
T ss_dssp HHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGS------------SEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCC
T ss_pred HHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcC------------CEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECC
Confidence 334444332236789999999999999998854 49999999999999999999999995 89999999
Q ss_pred cccccc--ccC----------CC-CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 136 SDELEV--GVD----------ID-SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 136 ~~~l~~--~~~----------l~-~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.++.. ... +. .+||+|+.++.... ..+.+. +.|+++|+++
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-----~~~~~~----~~l~~~g~iv 323 (369)
T 3bt7_A 270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-----LDSETE----KMVQAYPRIL 323 (369)
T ss_dssp SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-----CCHHHH----HHHTTSSEEE
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECcCccc-----cHHHHH----HHHhCCCEEE
Confidence 877531 000 00 27999999876532 223232 2455777664
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=109.44 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=72.5
Q ss_pred HHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
.+..++... +.++.+|||+|||+|.+++.+++.+ .+|+|+|.|+.|++.|+++++.|++. +++++.
T Consensus 274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~------------~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~ 340 (433)
T 1uwv_A 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA------------ASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYH 340 (433)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS------------SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC------------CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 334444333 3467899999999999999999884 49999999999999999999999997 899999
Q ss_pred ccccccccc-cCCCCCccEEEEccccc
Q 044245 134 KRSDELEVG-VDIDSRADILVSEILDS 159 (694)
Q Consensus 134 ~~~~~l~~~-~~l~~~~DlIvse~~~~ 159 (694)
+|+.+.... ....++||+|++++...
T Consensus 341 ~d~~~~l~~~~~~~~~fD~Vv~dPPr~ 367 (433)
T 1uwv_A 341 ENLEEDVTKQPWAKNGFDKVLLDPARA 367 (433)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTT
T ss_pred CCHHHHhhhhhhhcCCCCEEEECCCCc
Confidence 998873210 01125799999987664
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=104.86 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=73.9
Q ss_pred HHHHHHHhh-c-cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 55 AYRLAIDKM-V-TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 55 ~y~~ai~~~-~-~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
...+++... + .++.+|||||||||.++..+++.|+ .+|+|+|.++.|++.+.+. . .++..+
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga-----------~~V~aVDvs~~mL~~a~r~----~--~rv~~~ 134 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGA-----------KLVYAVDVGTNQLVWKLRQ----D--DRVRSM 134 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEECSSSSCSCHHHHT----C--TTEEEE
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCC-----------CEEEEEECCHHHHHHHHHh----C--ccccee
Confidence 344555553 2 2478999999999999999999876 6999999999999875431 1 245443
Q ss_pred e-ccccccccccCCCCC-ccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 133 N-KRSDELEVGVDIDSR-ADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 133 ~-~~~~~l~~~~~l~~~-~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
. .+++.+.. .+++.. ||+|+++.... .+..++..+.++|+|||.++-
T Consensus 135 ~~~ni~~l~~-~~l~~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 135 EQYNFRYAEP-VDFTEGLPSFASIDVSFI------SLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp CSCCGGGCCG-GGCTTCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEEE
T ss_pred cccCceecch-hhCCCCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEEE
Confidence 3 34444442 234444 99999864322 135566677789999998864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-08 Score=97.05 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=61.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||+|.++..+++.+. .+|+++|.|+.|++.|++++. +++++.+|..+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~-----------~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--- 108 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGA-----------ESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--- 108 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTB-----------SEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCC-----------CEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---
Confidence 34678999999999999999998854 589999999999999998764 6889999988753
Q ss_pred CCCCCccEEEEcccccc
Q 044245 144 DIDSRADILVSEILDSE 160 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~ 160 (694)
++||+|++++....
T Consensus 109 ---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 109 ---GKYDTWIMNPPFGS 122 (200)
T ss_dssp ---CCEEEEEECCCC--
T ss_pred ---CCeeEEEECCCchh
Confidence 58999999876543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-08 Score=108.08 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=83.0
Q ss_pred HHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCc-----------------------------cCCCccEEE
Q 044245 56 YRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTT-----------------------------SLNTKGMVT 104 (694)
Q Consensus 56 y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~-----------------------------~~~~~~~V~ 104 (694)
...++... ..++..|||.+||||.+++.+|..+... ... ......+|+
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~-apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNI-APGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTC-CTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCc-CCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 34444433 3457899999999999999999876510 000 000124699
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCC-ChHHHHHHHHHhccCC
Q 044245 105 ACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGE-GLIPTLQHAHDRLLVE 180 (694)
Q Consensus 105 avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e-~~l~~l~~~~~~~L~p 180 (694)
|+|+|+.|++.|++|++.+|+.++|+++++|+.++.. +.+||+||+++....-+++ ..+..+...+.+.|++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~----~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT----EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC----CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC----CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence 9999999999999999999998889999999988753 3589999999876322221 1233344444445554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=103.77 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHH----HHcCCCCCCccCCCccEE--EEEcCCHHHHHHHHHHHHHc-CCCCcEEE--Eeccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAA----RAMGSSDSTTSLNTKGMV--TACESYLPMVKLMKKVLHVN-GMGRNIKV--INKRS 136 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa----~~g~~~~~~~~~~~~~~V--~avE~s~~~~~~A~~~~~~n-gl~~~I~v--i~~~~ 136 (694)
++.+|||||||+|.++..++ ..++ ..+| +++|.|+.|++.|++.+... ++. ++++ ..++.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~----------~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~ 120 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYP----------GVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETS 120 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHST----------TCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCC----------CceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecch
Confidence 45799999999997765333 2222 2444 99999999999999988754 443 5544 45555
Q ss_pred cccccc---cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVG---VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~---~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++... ...+++||+|++...-.++ + -.+..+..+.++|+|||+++-
T Consensus 121 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~-d~~~~l~~~~r~LkpgG~l~i 170 (292)
T 2aot_A 121 SEYQSRMLEKKELQKWDFIHMIQMLYYV--K-DIPATLKFFHSLLGTNAKMLI 170 (292)
T ss_dssp HHHHHHHHTTTCCCCEEEEEEESCGGGC--S-CHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhhhhhccccCCCceeEEEEeeeeeec--C-CHHHHHHHHHHHcCCCcEEEE
Confidence 443210 0013689999985322222 2 255666677789999998864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=107.89 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=83.5
Q ss_pred HHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCc-----------------------------cCCCccEEE
Q 044245 56 YRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTT-----------------------------SLNTKGMVT 104 (694)
Q Consensus 56 y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~-----------------------------~~~~~~~V~ 104 (694)
...++... ..++..|||.|||||.+++.+|+.+... ... ......+|+
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~-apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINM-APGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTC-CTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhh-CCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 34444433 3457899999999999999999886410 000 000124799
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccC-CChHHHHHHHHHhccCC
Q 044245 105 ACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLG-EGLIPTLQHAHDRLLVE 180 (694)
Q Consensus 105 avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~-e~~l~~l~~~~~~~L~p 180 (694)
|+|+++.|++.|+++++.+|+.++|+++++|..++.. ++++|+||+++....-++ +..+..+...+.+.|++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~----~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS----EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC----SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc----CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998899999999988753 358999999987532222 11233344444445554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-08 Score=112.15 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|..++.+|+... +.++|+|+|+++.+++.++++++.+|+. +|+++++|..++.. ..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~---------~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~--~~ 184 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN---------NEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGA--AV 184 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT---------TCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHH--HS
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhh--hc
Confidence 789999999999999999998753 1369999999999999999999999986 79999999987642 12
Q ss_pred CCCccEEEEccccc--cccC--CCh---------------HHHHHHHHHhccCCCCeEEcCceEE
Q 044245 146 DSRADILVSEILDS--ELLG--EGL---------------IPTLQHAHDRLLVENPLTVPCRVTT 191 (694)
Q Consensus 146 ~~~~DlIvse~~~~--~l~~--e~~---------------l~~l~~~~~~~L~p~G~iiP~~~~~ 191 (694)
+++||.|++++.-+ +.+. ... ...++....++|+|||+++=..+++
T Consensus 185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 46899999976432 2221 110 1234555567999999998544443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=102.72 Aligned_cols=111 Identities=11% Similarity=-0.010 Sum_probs=77.0
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
+..+...+.+..+|||||||+|.|++.++...+ ..+|+|+|+|+.|++.+++++..+|+. .++...|.
T Consensus 123 Y~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p----------~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~ 190 (281)
T 3lcv_B 123 YRELFRHLPRPNTLRDLACGLNPLAAPWMGLPA----------ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADL 190 (281)
T ss_dssp HHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCT----------TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCT
T ss_pred HHHHHhccCCCceeeeeccCccHHHHHHHhhCC----------CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeee
Confidence 334444455578999999999999999887643 479999999999999999999999986 55555554
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
..- ..++++|++++...-.++-.+.-- .....+ ..|+++|++|
T Consensus 191 ~~~----~p~~~~DvaL~lkti~~Le~q~kg-~g~~ll-~aL~~~~vvV 233 (281)
T 3lcv_B 191 LED----RLDEPADVTLLLKTLPCLETQQRG-SGWEVI-DIVNSPNIVV 233 (281)
T ss_dssp TTS----CCCSCCSEEEETTCHHHHHHHSTT-HHHHHH-HHSSCSEEEE
T ss_pred ccc----CCCCCcchHHHHHHHHHhhhhhhH-HHHHHH-HHhCCCCEEE
Confidence 432 235789999986444333111100 122222 3688998876
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=113.80 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc
Q 044245 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
+.+.+.++.+|||||||+|+++..+|+.|+ +|+|||.++.+++.|+..+..+|.. +|++.+++.+++
T Consensus 60 ~~~~~~~~~~vLDvGCG~G~~~~~la~~ga------------~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~ 126 (569)
T 4azs_A 60 LSRALGRPLNVLDLGCAQGFFSLSLASKGA------------TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEV 126 (569)
T ss_dssp HHHHHTSCCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHH
T ss_pred HHhhcCCCCeEEEECCCCcHHHHHHHhCCC------------EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHH
Confidence 444456678999999999999999999987 8999999999999999999888754 799999999887
Q ss_pred ccccCCCCCccEEEE
Q 044245 140 EVGVDIDSRADILVS 154 (694)
Q Consensus 140 ~~~~~l~~~~DlIvs 154 (694)
... ..+++||+|+|
T Consensus 127 ~~~-~~~~~fD~v~~ 140 (569)
T 4azs_A 127 IAA-LEEGEFDLAIG 140 (569)
T ss_dssp HHH-CCTTSCSEEEE
T ss_pred hhh-ccCCCccEEEE
Confidence 421 12368999998
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=103.48 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=73.8
Q ss_pred HHHHhhc-cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 58 LAIDKMV-TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 58 ~ai~~~~-~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
+.+.+.+ .++.+|||||||+|.++..+++..+ ..+|+++|.|+.|++.|+++. .++.++.++.
T Consensus 76 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----------~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~ 139 (269)
T 1p91_A 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALP----------EITTFGLDVSKVAIKAAAKRY------PQVTFCVASS 139 (269)
T ss_dssp HHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT----------TSEEEEEESCHHHHHHHHHHC------TTSEEEECCT
T ss_pred HHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCC----------CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcch
Confidence 3334433 5678999999999999999998742 258999999999999998753 3688899998
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+++.. +++||+|++... .. .+..+.++|+|||+++
T Consensus 140 ~~~~~~---~~~fD~v~~~~~------~~----~l~~~~~~L~pgG~l~ 175 (269)
T 1p91_A 140 HRLPFS---DTSMDAIIRIYA------PC----KAEELARVVKPGGWVI 175 (269)
T ss_dssp TSCSBC---TTCEEEEEEESC------CC----CHHHHHHHEEEEEEEE
T ss_pred hhCCCC---CCceeEEEEeCC------hh----hHHHHHHhcCCCcEEE
Confidence 877542 268999998421 11 2344567899999876
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-09 Score=107.75 Aligned_cols=90 Identities=19% Similarity=0.053 Sum_probs=71.9
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCH-------HHHHHHHHHHHHcCCC
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYL-------PMVKLMKKVLHVNGMG 126 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~-------~~~~~A~~~~~~ngl~ 126 (694)
..+.+++ ...++.+|||+|||+|.+++.+|+.+. +|+++|.|+ .+++.|+++++.|++.
T Consensus 73 ~~l~~a~--~~~~~~~VLDlgcG~G~~a~~lA~~g~------------~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~ 138 (258)
T 2r6z_A 73 ELIAKAV--NHTAHPTVWDATAGLGRDSFVLASLGL------------TVTAFEQHPAVACLLSDGIRRALLNPETQDTA 138 (258)
T ss_dssp CHHHHHT--TGGGCCCEEETTCTTCHHHHHHHHTTC------------CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHh--CcCCcCeEEEeeCccCHHHHHHHHhCC------------EEEEEECChhhhHHHHHHHHHHHhHHHhhCCc
Confidence 3444444 234578999999999999999999864 899999999 9999999999999887
Q ss_pred CcEEEEeccccccccccCCC---CCccEEEEccccc
Q 044245 127 RNIKVINKRSDELEVGVDID---SRADILVSEILDS 159 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~---~~~DlIvse~~~~ 159 (694)
++|+++++|+.++.. .++ ++||+|+++++..
T Consensus 139 ~ri~~~~~d~~~~l~--~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 139 ARINLHFGNAAEQMP--ALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp TTEEEEESCHHHHHH--HHHHHHCCCSEEEECCCC-
T ss_pred cCeEEEECCHHHHHH--hhhccCCCccEEEECCCCC
Confidence 679999999887521 112 5799999988654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=97.30 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=75.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+||| |.+++.+++.| +.+|+++|. ++.+.+.+++.++.|++ +++++++++.+++.. .++.+++|+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~--~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~-~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVES--DQRSAAVIARNIEALGL--SGATLRRGAVAAVVA-AGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEEC--CHHHHHHHHHHHHHHTC--SCEEEEESCHHHHHH-HCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEEC--CHHHHHHHHHHHHHcCC--CceEEEEccHHHHHh-hccCCCccE
Confidence 467899999999 99999888875 889999999 77777888999999998 589999998776532 122478999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++.+-|......+. ..+. ... ..++|+|||.++
T Consensus 117 i~~~~p~~~~~~~~~-~~l~--~~~--~~~~L~pgG~l~ 150 (189)
T 3p9n_A 117 VLADPPYNVDSADVD-AILA--ALG--TNGWTREGTVAV 150 (189)
T ss_dssp EEECCCTTSCHHHHH-HHHH--HHH--HSSSCCTTCEEE
T ss_pred EEECCCCCcchhhHH-HHHH--HHH--hcCccCCCeEEE
Confidence 999863332000111 1111 111 123799999865
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=103.99 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=80.1
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCC
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDS 147 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~ 147 (694)
.+|||||||+|.++..++++.+ ..+++++|. +.+++.|++++..+++.++|+++.+|..+ . .++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~----~~~ 232 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEP----------SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E----VPS 232 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCT----------TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C----CCS
T ss_pred CEEEEeCCCchHHHHHHHHHCC----------CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C----CCC
Confidence 7999999999999999999864 368999999 99999999999888887899999999876 2 236
Q ss_pred CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 148 RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 148 ~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+||+|++..+-+.. .+.....++..+.+.|+|||+++-
T Consensus 233 ~~D~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i 270 (334)
T 2ip2_A 233 NGDIYLLSRIIGDL-DEAASLRLLGNCREAMAGDGRVVV 270 (334)
T ss_dssp SCSEEEEESCGGGC-CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCEEEEchhccCC-CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 79999984322111 122233666677789999998763
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-09 Score=104.50 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=68.3
Q ss_pred HHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 56 YRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 56 y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
..+++.... .++.+|||||||||.++..+++.++ .+|+|+|+|+.|++.|+++.. ++....
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-----------~~V~gvDis~~ml~~a~~~~~------~~~~~~ 87 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-----------KLVYALDVGTNQLAWKIRSDE------RVVVME 87 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEECSSCCCCCHHHHTCT------TEEEEC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-----------CEEEEEcCCHHHHHHHHHhCc------cccccc
Confidence 345555432 2467999999999999999999875 599999999999998765321 333222
Q ss_pred c-cccccccccCCCC-CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 134 K-RSDELEVGVDIDS-RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 134 ~-~~~~l~~~~~l~~-~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
. +...+.. .+++. .+|.+.++..... +..++..+.++|+|||.++-
T Consensus 88 ~~~~~~~~~-~~~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 88 QFNFRNAVL-ADFEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp SCCGGGCCG-GGCCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred cceEEEeCH-hHcCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence 1 2222211 12222 3566555433222 24566667789999998875
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7.3e-08 Score=100.05 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=65.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++... . ++++++++|+.++..+.
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~~------------~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKNA------------KKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKVDLNK 112 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS------------SEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTSCGGG
T ss_pred CCCcCEEEEECCCchHHHHHHHhcC------------CEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhCCccc
Confidence 4568899999999999999999986 4999999999999999998873 3 48999999998876532
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
..||.|++++..
T Consensus 113 ---~~fD~Iv~NlPy 124 (295)
T 3gru_A 113 ---LDFNKVVANLPY 124 (295)
T ss_dssp ---SCCSEEEEECCG
T ss_pred ---CCccEEEEeCcc
Confidence 469999998655
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-08 Score=99.62 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=64.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+|+|+++.|++.++++... .++++++++|..+++++.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~~------------~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTECD------------NLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSS 91 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTSS------------EEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGG
T ss_pred CCCcCEEEEEcccccHHHHHHHHhCC------------EEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHH
Confidence 45688999999999999999998864 999999999999999988764 348999999999887533
Q ss_pred CC-CCCccEEEEcccc
Q 044245 144 DI-DSRADILVSEILD 158 (694)
Q Consensus 144 ~l-~~~~DlIvse~~~ 158 (694)
.. .+++| ||+|+.+
T Consensus 92 ~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPY 106 (255)
T ss_dssp SCCSSCEE-EEEECCH
T ss_pred hccCCCeE-EEecCCc
Confidence 21 24677 8888655
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=104.99 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=86.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..+..+++... +.++|+|+|.++.+++.++++++.+|+. +|+++.+|..++..
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~---------~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~-- 324 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMK---------NKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPE-- 324 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTT---------TCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSS--
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcC---------CCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcch--
Confidence 55788999999999999999998754 1269999999999999999999999986 79999999887641
Q ss_pred CCC-CCccEEEEccccc--cccC--CCh---------------HHHHHHHHHhccCCCCeEEcCceE
Q 044245 144 DID-SRADILVSEILDS--ELLG--EGL---------------IPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 144 ~l~-~~~DlIvse~~~~--~l~~--e~~---------------l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+ ++||+|++++.-+ +.+. .+. ...++....++|+|||+++-..++
T Consensus 325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 123 5799999875332 2221 111 134566666799999999744333
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-08 Score=104.86 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCC------CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAG------TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~G------tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
...|.+.+.....++.+||||||| +|..++.+++... +..+|+++|+|+.|. . ..
T Consensus 203 ~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f---------P~a~V~GVDiSp~m~--------~--~~ 263 (419)
T 3sso_A 203 TPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFF---------PRGQIYGLDIMDKSH--------V--DE 263 (419)
T ss_dssp HHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHC---------TTCEEEEEESSCCGG--------G--CB
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhC---------CCCEEEEEECCHHHh--------h--cC
Confidence 456777777766678999999999 7766666666532 136999999999973 1 23
Q ss_pred CcEEEEeccccccccccC---CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 127 RNIKVINKRSDELEVGVD---IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~---l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+|+++++|..++++... ..++||+|+++.. ...+ .....+..+.++|+|||+++-
T Consensus 264 ~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs---H~~~-d~~~aL~el~rvLKPGGvlVi 322 (419)
T 3sso_A 264 LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS---HINA-HVRTSFAALFPHVRPGGLYVI 322 (419)
T ss_dssp TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC---CCHH-HHHHHHHHHGGGEEEEEEEEE
T ss_pred CCcEEEEecccccchhhhhhcccCCccEEEECCc---ccch-hHHHHHHHHHHhcCCCeEEEE
Confidence 589999999998764310 0368999998531 1111 234455666789999999874
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.2e-08 Score=99.14 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.+++.+|+.| +++|+++|. ++.+.+.+++.++.||++ ++++++.++..++.. .++.|+|
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~-~~~V~~vD~--s~~~~~~a~~n~~~n~~~-~~v~~~~~D~~~~~~----~~~fD~V 196 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEK--DPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG----ENIADRI 196 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECC--CHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC----CSCEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhC-CCEEEEEEC--CHHHHHHHHHHHHHcCCC-ceEEEEECCHHHhcc----cCCccEE
Confidence 57899999999 99999999996 679999999 788888899999999998 889999998776643 4789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+-+.. ..++. .+ .+.|+|||.++
T Consensus 197 i~~~p~~~-~~~l~-------~~----~~~LkpgG~l~ 222 (278)
T 2frn_A 197 LMGYVVRT-HEFIP-------KA----LSIAKDGAIIH 222 (278)
T ss_dssp EECCCSSG-GGGHH-------HH----HHHEEEEEEEE
T ss_pred EECCchhH-HHHHH-------HH----HHHCCCCeEEE
Confidence 99863221 01111 11 12589999876
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.7e-08 Score=95.83 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=72.2
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||+|||+|.++..+++.+ .+|+++|.++.+++.|+++. .+++.++..+...+ .
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~------------~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~-~ 89 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG------------TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMP-Y 89 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT------------CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCC-S
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC------------CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCC-C
Confidence 467899999999999999998874 49999999999999887542 25778887764321 1
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++||+|++...-.++ .....++..+.++|+|||.++-
T Consensus 90 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~~ 128 (230)
T 3cc8_A 90 EEEQFDCVIFGDVLEHL---FDPWAVIEKVKPYIKQNGVILA 128 (230)
T ss_dssp CTTCEEEEEEESCGGGS---SCHHHHHHHTGGGEEEEEEEEE
T ss_pred CCCccCEEEECChhhhc---CCHHHHHHHHHHHcCCCCEEEE
Confidence 13689999985322222 1245677777889999998864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.9e-08 Score=98.44 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCCH----HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--------------------
Q 044245 67 SCHVLDIGAGTGL----LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-------------------- 122 (694)
Q Consensus 67 ~~~VLDiG~GtG~----lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-------------------- 122 (694)
+.+|||+|||||. +++.+++..+... ...+|+|+|+|+.|++.|++.+-.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~------~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~ 179 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAP------GRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT 179 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCT------TSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCC------CCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccc
Confidence 4689999999997 7777777632100 024899999999999999986410
Q ss_pred ---cC-------CCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 123 ---NG-------MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 123 ---ng-------l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+| +.++|++.++|..+.+++ ..++||+|+|.-+-.++ .+.....++..+.+.|+|||.++-.
T Consensus 180 ~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~--~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 180 GPHEGLVRVRQELANYVEFSSVNLLEKQYN--VPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp TTSCSEEEECHHHHTTEEEEECCTTCSSCC--CCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred cCCCCceeechhhcccCeEEecccCCCCCC--cCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 11 113699999998774332 13689999994221111 2223456777788899999998753
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-08 Score=98.28 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=70.6
Q ss_pred hhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC
Q 044245 46 MLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM 125 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl 125 (694)
++.|..-.+...+++. +.++ +|||||||+|.++..+++.++ +|+|+|.++.|++.++++..
T Consensus 29 fL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~~------------~V~avEid~~~~~~l~~~~~---- 89 (271)
T 3fut_A 29 FLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAGA------------EVTAIEKDLRLRPVLEETLS---- 89 (271)
T ss_dssp EECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTTC------------CEEEEESCGGGHHHHHHHTT----
T ss_pred ccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcCC------------EEEEEECCHHHHHHHHHhcC----
Confidence 4556543333332221 4567 999999999999999999874 89999999999999998765
Q ss_pred CCcEEEEeccccccccccCCCCCccEEEEccccc
Q 044245 126 GRNIKVINKRSDELEVGVDIDSRADILVSEILDS 159 (694)
Q Consensus 126 ~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~ 159 (694)
.++++++++|..+++.+. + ..+|.|++|+.++
T Consensus 90 ~~~v~vi~~D~l~~~~~~-~-~~~~~iv~NlPy~ 121 (271)
T 3fut_A 90 GLPVRLVFQDALLYPWEE-V-PQGSLLVANLPYH 121 (271)
T ss_dssp TSSEEEEESCGGGSCGGG-S-CTTEEEEEEECSS
T ss_pred CCCEEEEECChhhCChhh-c-cCccEEEecCccc
Confidence 248999999998876532 1 2689999987653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=101.48 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=81.7
Q ss_pred hhCCHHHHHHHHHHHHh-----------h--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHH
Q 044245 46 MLNDSYRNRAYRLAIDK-----------M--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPM 112 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~-----------~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~ 112 (694)
+..+..+.+.|.+++.. . +.++.+|||||||+|.++..++++.+ ..+++++|. +.+
T Consensus 151 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~ 219 (348)
T 3lst_A 151 FDGDAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFLLTVLREHP----------GLQGVLLDR-AEV 219 (348)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTHHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCT----------TEEEEEEEC-HHH
T ss_pred HHhCHHHHHHHHHHHHHhhhhhHHHHHHhCCccCCceEEEECCccCHHHHHHHHHCC----------CCEEEEecC-HHH
Confidence 34566555566554432 1 23468999999999999999999875 468999999 555
Q ss_pred HHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 113 VKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 113 ~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+. +++++..++.++|+++.+|..+ .++ .||+|++..+-+.. .+.....++..+++.|+|||+++
T Consensus 220 ~~--~~~~~~~~~~~~v~~~~~d~~~-----~~p-~~D~v~~~~vlh~~-~d~~~~~~L~~~~~~LkpgG~l~ 283 (348)
T 3lst_A 220 VA--RHRLDAPDVAGRWKVVEGDFLR-----EVP-HADVHVLKRILHNW-GDEDSVRILTNCRRVMPAHGRVL 283 (348)
T ss_dssp HT--TCCCCCGGGTTSEEEEECCTTT-----CCC-CCSEEEEESCGGGS-CHHHHHHHHHHHHHTCCTTCEEE
T ss_pred hh--cccccccCCCCCeEEEecCCCC-----CCC-CCcEEEEehhccCC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 54 4444445677789999999862 234 89999984322211 12122466667778999999986
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-08 Score=102.27 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH--cCC-CCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV--NGM-GRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~--ngl-~~~I~vi~~~~~~l~~~ 142 (694)
.+.+|||||||+|.++..+++. + .+|+++|+++.+++.|+++... +++ ..+++++.+|..+..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-----------~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-- 137 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-----------THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-- 137 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-----------CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-----------CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--
Confidence 4689999999999999888876 3 4999999999999999886532 222 348999999987642
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
++||+|+++..+ . . .+...+.+.|+|||+++-+
T Consensus 138 ----~~fD~Ii~d~~d------p-~-~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 138 ----KKYDLIFCLQEP------D-I-HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ----CCEEEEEESSCC------C-H-HHHHHHHTTEEEEEEEEEE
T ss_pred ----hhCCEEEECCCC------h-H-HHHHHHHHhcCCCcEEEEE
Confidence 689999987322 1 1 2566677899999998753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=94.55 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=70.8
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.+..+|||||||+|.|++.+. ++ .+|+|+|+++.|++.+++++..+|. +..+...|.....
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~-----------~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~---- 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GI-----------ASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAP---- 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TC-----------SEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSC----
T ss_pred CCCCeEEEecCCccHHHHHhc--cC-----------CeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCC----
Confidence 457899999999999999877 33 6999999999999999999999885 5677777766543
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++++|++++..+-..+-.+.- ......++ -|++++++|
T Consensus 165 ~~~~~DvvLllk~lh~LE~q~~-~~~~~ll~-aL~~~~vvV 203 (253)
T 3frh_A 165 PAEAGDLALIFKLLPLLEREQA-GSAMALLQ-SLNTPRMAV 203 (253)
T ss_dssp CCCBCSEEEEESCHHHHHHHST-THHHHHHH-HCBCSEEEE
T ss_pred CCCCcchHHHHHHHHHhhhhch-hhHHHHHH-HhcCCCEEE
Confidence 3468999988543333211110 01222333 577877665
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=96.91 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=68.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|..++.+++... +.++|+|+|+++.+++.++++++.+|+. +|+++++|..++....
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~---------~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 169 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLK---------NQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD 169 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT---------TCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccc
Confidence 46789999999999999999998742 1369999999999999999999999985 7999999988764311
Q ss_pred CCCCCccEEEEccc
Q 044245 144 DIDSRADILVSEIL 157 (694)
Q Consensus 144 ~l~~~~DlIvse~~ 157 (694)
...++||.|++++.
T Consensus 170 ~~~~~fD~Vl~D~P 183 (309)
T 2b9e_A 170 PRYHEVHYILLDPS 183 (309)
T ss_dssp GGGTTEEEEEECCC
T ss_pred cccCCCCEEEEcCC
Confidence 11147999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.4e-08 Score=97.12 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=62.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+|+|.++.|++.|+++.+. . ++++++++|+.+++.+.
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~~------------~v~~vD~~~~~~~~a~~~~~~--~-~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRCN------------FVTAIEIDHKLCKTTENKLVD--H-DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS------------EEEEECSCHHHHHHHHHHTTT--C-CSEEEECCCGGGCCCCS
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcCC------------eEEEEECCHHHHHHHHHhhcc--C-CCeEEEEChHHhCCccc
Confidence 34678999999999999999999874 899999999999999988753 2 48999999998876432
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
...+ .|++++..
T Consensus 93 --~~~~-~vv~nlPy 104 (244)
T 1qam_A 93 --NQSY-KIFGNIPY 104 (244)
T ss_dssp --SCCC-EEEEECCG
T ss_pred --CCCe-EEEEeCCc
Confidence 1245 67777655
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.5e-08 Score=104.52 Aligned_cols=81 Identities=9% Similarity=0.060 Sum_probs=67.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl~~~I~vi~~~~~~l~~ 141 (694)
+.+|.+|||+|||+|..++.+++.+. +|+++|.|+.|++.|++|++.+ |+ ++|+++++|+.+...
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g~------------~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~ 157 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKAS------------QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLP 157 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTCS------------EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHH
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcCC------------EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhh
Confidence 33489999999999999999998764 9999999999999999999998 88 589999999887421
Q ss_pred ccCCCCCccEEEEcccc
Q 044245 142 GVDIDSRADILVSEILD 158 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~ 158 (694)
....++||+|++++..
T Consensus 158 -~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 158 -LIKTFHPDYIYVDPAR 173 (410)
T ss_dssp -HHHHHCCSEEEECCEE
T ss_pred -hccCCCceEEEECCCC
Confidence 0002479999998765
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-08 Score=94.52 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=75.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc-ccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK-VDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~-vDv 482 (694)
+++.|||+||| |.+++.+++.| +.+|+++|. ++.+.+.+++.++.||++.++|+++.++..++.. .+..++ .|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLEL--DKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK-QPQNQPHFDV 128 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECS--CHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT-SCCSSCCEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEEC--CHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH-hhccCCCCCE
Confidence 56789999999 99999877776 789999999 7777788899999999831479999997765432 122467 999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
|++.+-|. .+..+ ..+.. ... .++|+|||.++=
T Consensus 129 I~~~~~~~--~~~~~-~~l~~--~~~--~~~LkpgG~l~i 161 (201)
T 2ift_A 129 VFLDPPFH--FNLAE-QAISL--LCE--NNWLKPNALIYV 161 (201)
T ss_dssp EEECCCSS--SCHHH-HHHHH--HHH--TTCEEEEEEEEE
T ss_pred EEECCCCC--CccHH-HHHHH--HHh--cCccCCCcEEEE
Confidence 99986432 12222 22211 111 347999997653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=94.12 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=71.7
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.+.+... +.+|||||||+|.++..+++ . +++|.++.|++.|+++ +++++.++..
T Consensus 40 ~~l~~~~~-~~~vLDiG~G~G~~~~~l~~---------------~-~~vD~s~~~~~~a~~~--------~~~~~~~d~~ 94 (219)
T 1vlm_A 40 QAVKCLLP-EGRGVEIGVGTGRFAVPLKI---------------K-IGVEPSERMAEIARKR--------GVFVLKGTAE 94 (219)
T ss_dssp HHHHHHCC-SSCEEEETCTTSTTHHHHTC---------------C-EEEESCHHHHHHHHHT--------TCEEEECBTT
T ss_pred HHHHHhCC-CCcEEEeCCCCCHHHHHHHH---------------H-hccCCCHHHHHHHHhc--------CCEEEEcccc
Confidence 34444444 88999999999998776531 3 9999999999998875 5788899988
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++.+ +++||+|++...-..+ .....++..+.++|+|||.++-
T Consensus 95 ~~~~~---~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i 137 (219)
T 1vlm_A 95 NLPLK---DESFDFALMVTTICFV---DDPERALKEAYRILKKGGYLIV 137 (219)
T ss_dssp BCCSC---TTCEEEEEEESCGGGS---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCC---CCCeeEEEEcchHhhc---cCHHHHHHHHHHHcCCCcEEEE
Confidence 76532 3689999985322222 2245666777789999998863
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=90.15 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=70.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc---
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE--- 140 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~--- 140 (694)
+.++.+|||+|||+|.++..+++... +..+|+++|.++ +++. .+++++.++..+.+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~---------~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~ 78 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIG---------GKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMK 78 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHC---------TTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhC---------CCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhh
Confidence 46788999999999999999998832 135999999998 6532 47999999988764
Q ss_pred -----cccCCCCCccEEEEccccccccCCCh---------HHHHHHHHHhccCCCCeEE
Q 044245 141 -----VGVDIDSRADILVSEILDSELLGEGL---------IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 -----~~~~l~~~~DlIvse~~~~~l~~e~~---------l~~l~~~~~~~L~p~G~ii 185 (694)
.+ +++||+|+++...... +... ...++..+.++|+|||.++
T Consensus 79 ~~~~~~~---~~~~D~i~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 133 (180)
T 1ej0_A 79 ALLERVG---DSKVQVVMSDMAPNMS-GTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp HHHHHHT---TCCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCC---CCceeEEEECCCcccc-CCCccchHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 21 2589999986433211 1110 1455666677999999887
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-08 Score=95.49 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=67.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||+|||+|.++..+++.+ .+|+|+|+++.. .. .+++++++|+.+.....
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~------------~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~ 78 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLA------------RKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFD 78 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTC------------SEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcC------------CcEEEEeccccc-----------cC-CCeEEEEccccCHHHHH
Confidence 5678999999999999999999884 599999998641 23 37999999988754211
Q ss_pred ----CCC----CCccEEEEccccccccCCC---------hHHHHHHHHHhccCCCCeEE
Q 044245 144 ----DID----SRADILVSEILDSELLGEG---------LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ----~l~----~~~DlIvse~~~~~l~~e~---------~l~~l~~~~~~~L~p~G~ii 185 (694)
.+. ++||+|+|++..... +.. ....++....++|+|||.++
T Consensus 79 ~~~~~~~~~~~~~~D~Vlsd~~~~~~-g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 79 DIDRALREEGIEKVDDVVSDAMAKVS-GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp HHHHHHHHHTCSSEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHhhcccCCcceEEecCCCcCCC-CCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 011 489999997532111 110 11234445567999999987
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-08 Score=109.35 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=69.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE-EEecccccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK-VINKRSDELEVGV 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~-vi~~~~~~l~~~~ 143 (694)
.++.+|||||||+|.++..+++.+. +|+++|.|+.|++.|++. ++..... +...+..+++.+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~------------~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~- 168 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV------------RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT- 168 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC------------EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH-
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC------------cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC-
Confidence 4678999999999999999998864 999999999999988864 4432111 111222233221
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++..+-.++ .....++..+.++|+|||+++-
T Consensus 169 --~~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i 206 (416)
T 4e2x_A 169 --EGPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVF 206 (416)
T ss_dssp --HCCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEE
T ss_pred --CCCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEE
Confidence 2689999985332222 2356677777889999999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.2e-08 Score=91.26 Aligned_cols=115 Identities=12% Similarity=0.032 Sum_probs=79.3
Q ss_pred HHHHHHHhc-CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 394 VMAMRNALQ-GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 394 ~~Ai~~~~~-~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
.+++.+... ..+++.|||+||| |.+++.+++.| +.+|+++|. ++.+.+.+++.++.+|+. ++++++.++..+..
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEK--NRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAI 94 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECC--CHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHHHHHcCCC-CceEEEECcHHHhH
Confidence 334444443 3467899999999 99999888885 789999999 777778889999999997 79999999876532
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. .+ .++.|+|++.+-|.. ...+ +.+..+.. .++|+|||.++
T Consensus 95 ~-~~-~~~fD~i~~~~~~~~--~~~~-~~~~~l~~----~~~L~~gG~l~ 135 (177)
T 2esr_A 95 D-CL-TGRFDLVFLDPPYAK--ETIV-ATIEALAA----KNLLSEQVMVV 135 (177)
T ss_dssp H-HB-CSCEEEEEECCSSHH--HHHH-HHHHHHHH----TTCEEEEEEEE
T ss_pred H-hh-cCCCCEEEECCCCCc--chHH-HHHHHHHh----CCCcCCCcEEE
Confidence 1 12 356999999853321 1122 22221111 25799999653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=96.71 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=67.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++++|+.+ ..+|+++|. ++.+.+.+++.++.|+++ ++|++++++..++.. .++.+++|+|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~-~~~v~gvDi--~~~~~~~a~~n~~~~~~~-~~v~~~~~D~~~~~~-~~~~~~fD~I 123 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRT-KAKIVGVEI--QERLADMAKRSVAYNQLE-DQIEIIEYDLKKITD-LIPKERADIV 123 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTC-CCEEEEECC--SHHHHHHHHHHHHHTTCT-TTEEEECSCGGGGGG-TSCTTCEEEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhc-CCcEEEEEC--CHHHHHHHHHHHHHCCCc-ccEEEEECcHHHhhh-hhccCCccEE
Confidence 57899999999 99999999986 559999999 787778899999999998 899999998776643 2335789999
Q ss_pred Eccc-ccc
Q 044245 484 IGEP-YYF 490 (694)
Q Consensus 484 vsE~-~~~ 490 (694)
|+-| |+.
T Consensus 124 i~npPy~~ 131 (259)
T 3lpm_A 124 TCNPPYFA 131 (259)
T ss_dssp EECCCC--
T ss_pred EECCCCCC
Confidence 9984 443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=104.69 Aligned_cols=116 Identities=15% Similarity=0.023 Sum_probs=86.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+|||+|..+..+++.++ .++|+|+|+++.+++.++++++.+|+ +++++.+|..++...
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~----------~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~- 310 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAP----------EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQW- 310 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCT----------TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHH-
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcC----------CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhh-
Confidence 45788999999999999999999874 36999999999999999999999998 478899998876410
Q ss_pred CCCCCccEEEEccccc--cccC--CC--------hH-------HHHHHHHHhccCCCCeEEcCceEEE
Q 044245 144 DIDSRADILVSEILDS--ELLG--EG--------LI-------PTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~--~l~~--e~--------~l-------~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
...++||+|++++.-+ +.+. .. .+ ..++....++|+|||+++-..+++.
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 0125799999876432 2221 11 11 2455666679999999876554443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=93.54 Aligned_cols=90 Identities=6% Similarity=-0.017 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEe
Q 044245 385 GDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEIL 463 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi 463 (694)
+=+.|-+ +|.+.+. ++..|+||||| |+|++.+|+.|.+.+|+|+|- ++.+.+.|++.++.||++ ++|+++
T Consensus 7 ~Ls~RL~----~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi--~~~al~~A~~N~~~~gl~-~~I~~~ 77 (230)
T 3lec_A 7 QLSKRLQ----KVANYVP--KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEV--VNGPYQSALKNVSEHGLT-SKIDVR 77 (230)
T ss_dssp CCCHHHH----HHHTTSC--TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEES--SHHHHHHHHHHHHHTTCT-TTEEEE
T ss_pred cHHHHHH----HHHHhCC--CCCEEEEECCchHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEE
Confidence 3345544 4555553 56789999999 999999999975789999999 788888999999999998 899999
Q ss_pred ecccccccccccCCccccEEEcc
Q 044245 464 QKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 464 ~~~~~~~~~~~l~~~~vDvivsE 486 (694)
.++.-+.-. +.+++|+||.-
T Consensus 78 ~gD~l~~~~---~~~~~D~Ivia 97 (230)
T 3lec_A 78 LANGLSAFE---EADNIDTITIC 97 (230)
T ss_dssp ECSGGGGCC---GGGCCCEEEEE
T ss_pred ECchhhccc---cccccCEEEEe
Confidence 986432211 12369998764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=92.59 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.+++.+++.| +.+|+++|. ++.+.+.+++.++.|++ ++|+++.++.++.... ..++.|+|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~--s~~~l~~a~~~~~~~~~--~~v~~~~~D~~~~~~~--~~~~fD~V 126 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEM--DRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQ--KGTPHNIV 126 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECS--CHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSS--CCCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEEC--CHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHhh--cCCCCCEE
Confidence 56789999999 99999877776 789999999 77777888999999998 5899999987653221 24679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.|-|.. +... ..+.. ..+ .++|+|||.++
T Consensus 127 ~~~~p~~~--~~~~-~~l~~-l~~---~~~L~pgG~l~ 157 (202)
T 2fpo_A 127 FVDPPFRR--GLLE-ETINL-LED---NGWLADEALIY 157 (202)
T ss_dssp EECCSSST--TTHH-HHHHH-HHH---TTCEEEEEEEE
T ss_pred EECCCCCC--CcHH-HHHHH-HHh---cCccCCCcEEE
Confidence 99864331 2222 22221 111 24699999765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=92.95 Aligned_cols=82 Identities=5% Similarity=0.055 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
+|.+.+. ++..|+||||| |.|++.+|+.|.+.+|+|+|- ++.+.+.|+++++.||++ ++|+++.++.- + .
T Consensus 8 ~l~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi--~~~al~~A~~N~~~~gl~-~~i~~~~~d~l--~--~ 78 (225)
T 3kr9_A 8 LVASFVS--QGAILLDVGSDHAYLPIELVERGQIKSAIAGEV--VEGPYQSAVKNVEAHGLK-EKIQVRLANGL--A--A 78 (225)
T ss_dssp HHHTTSC--TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEES--SHHHHHHHHHHHHHTTCT-TTEEEEECSGG--G--G
T ss_pred HHHHhCC--CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-ceEEEEECchh--h--h
Confidence 4555443 56789999999 999999999965789999999 788888999999999998 89999998642 1 2
Q ss_pred cCCc-cccEEEcc
Q 044245 475 TQQK-KVDLLIGE 486 (694)
Q Consensus 475 l~~~-~vDvivsE 486 (694)
+++. ++|+||.-
T Consensus 79 l~~~~~~D~Ivia 91 (225)
T 3kr9_A 79 FEETDQVSVITIA 91 (225)
T ss_dssp CCGGGCCCEEEEE
T ss_pred cccCcCCCEEEEc
Confidence 2223 69988764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.5e-07 Score=89.05 Aligned_cols=107 Identities=13% Similarity=0.030 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+..+.+.....++..|||+||| |.+++.+|+.| .+|+++|. ++.+.+.|++.++.+|+. ++|+++.++.++.-.
T Consensus 44 ~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~--s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~ 118 (204)
T 3njr_A 44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEP--RADRIENIQKNIDTYGLS-PRMRAVQGTAPAALA 118 (204)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEESCTTGGGT
T ss_pred HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeC--CHHHHHHHHHHHHHcCCC-CCEEEEeCchhhhcc
Confidence 3344455555577899999999 99999999983 68999999 777778889999999997 799999998776321
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. .+++|+|++.. ++-+ ..+ ....+.|+|||+++
T Consensus 119 -~--~~~~D~v~~~~------~~~~-~~l------~~~~~~LkpgG~lv 151 (204)
T 3njr_A 119 -D--LPLPEAVFIGG------GGSQ-ALY------DRLWEWLAPGTRIV 151 (204)
T ss_dssp -T--SCCCSEEEECS------CCCH-HHH------HHHHHHSCTTCEEE
T ss_pred -c--CCCCCEEEECC------cccH-HHH------HHHHHhcCCCcEEE
Confidence 1 24689999765 2211 111 11223699999765
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-08 Score=105.72 Aligned_cols=102 Identities=22% Similarity=0.203 Sum_probs=68.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-HHcCCCCcEEEE--eccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-HVNGMGRNIKVI--NKRSDELE 140 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-~~ngl~~~I~vi--~~~~~~l~ 140 (694)
+.++.+|||||||+|.++..+++. + +|+|+|.++ |+..+++.. ..+....+|+++ ++|+.+++
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~-~------------~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ-P------------NVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS-T------------TEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc-C------------CEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 456889999999999999999887 3 799999988 643332210 011122278899 88888764
Q ss_pred cccCCCCCccEEEEccccccccCCChH--H---HHHHHHHhccCCCC--eEEc
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLI--P---TLQHAHDRLLVENP--LTVP 186 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l--~---~l~~~~~~~L~p~G--~iiP 186 (694)
+++||+|+|+.. . ..+.... . .++..+.++|+||| .++-
T Consensus 146 -----~~~fD~Vvsd~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 146 -----PFQADTVLCDIG-E-SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp -----CCCCSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred -----CCCcCEEEECCC-c-CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 268999999755 2 2111111 1 24556667999999 7764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-07 Score=90.12 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=68.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++.+|||||||+|.++..+++..++ +..+|+|+|.++.+ .. .+++++++|+.+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~--------~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~ 79 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKN--------YKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNN 79 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTT--------SCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCC--------CCceEEEEeCCccC-----------CC-CCceEEEccccchhhhh
Confidence 567889999999999999999988530 02689999998731 22 3789999998775400
Q ss_pred --------------------cCC-CCCccEEEEccccccccCCChH---------HHHHHHHHhccCCCCeEEc
Q 044245 143 --------------------VDI-DSRADILVSEILDSELLGEGLI---------PTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 --------------------~~l-~~~~DlIvse~~~~~l~~e~~l---------~~l~~~~~~~L~p~G~iiP 186 (694)
..+ .++||+|+++..... .+.... ..++....++|+|||.++-
T Consensus 80 ~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~-~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 80 IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPC-IGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp C-----------CHHHHHHHHHHTTCCEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCC-CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 001 258999999643211 111011 1245556679999998873
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.9e-07 Score=86.70 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=76.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC--CCcEEEEeccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM--GRNIKVINKRSDELE- 140 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl--~~~I~vi~~~~~~l~- 140 (694)
+.+.++|||+|| |.-++++|+.. .++|++||.+++.++.|+++++.+|+ .++|+++.++..+..
T Consensus 28 l~~a~~VLEiGt--GySTl~lA~~~-----------~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~ 94 (202)
T 3cvo_A 28 YEEAEVILEYGS--GGSTVVAAELP-----------GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGD 94 (202)
T ss_dssp HHHCSEEEEESC--SHHHHHHHTST-----------TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCG
T ss_pred hhCCCEEEEECc--hHHHHHHHHcC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhc
Confidence 345789999998 57788888742 26999999999999999999999998 889999999965431
Q ss_pred ------------ccc------CCC--CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 141 ------------VGV------DID--SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 141 ------------~~~------~l~--~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
++. .+. ++||+|+.+- ......+..++ ++|+|||+++-+.
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg-------~k~~~~~~~~l-~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG-------RFRVGCALATA-FSITRPVTLLFDD 154 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS-------SSHHHHHHHHH-HHCSSCEEEEETT
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC-------CCchhHHHHHH-HhcCCCeEEEEeC
Confidence 000 122 6799999752 21233344444 6899999997654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=99.95 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.++..+++...... ....+++|+|+++.+++.|+.++..+|+ ++.++++|..+.. .
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~-----~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~----~ 198 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKG-----DVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL----L 198 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTS-----SCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC----C
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhc-----CCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc----c
Confidence 457999999999999999988763100 0015899999999999999999998887 5889999876532 2
Q ss_pred CCCccEEEEccccccccC------------CC--hH-HHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLG------------EG--LI-PTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~------------e~--~l-~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++++.....-. ++ .. ..++....++|+|||+++
T Consensus 199 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~ 253 (344)
T 2f8l_A 199 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 253 (344)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 368999999976322210 00 01 134444456899998653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=96.42 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++.+|||+|||+|.++..+++..+ ..+|+|+|.|+.|++.|+++++.+| +++++++++..++...
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~----------~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCP----------GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLL 91 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHH
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCC----------CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHH
Confidence 45688999999999999999999863 2699999999999999999998887 5899999999886410
Q ss_pred cCCC-CCccEEEEcc
Q 044245 143 VDID-SRADILVSEI 156 (694)
Q Consensus 143 ~~l~-~~~DlIvse~ 156 (694)
.... .+||.|++++
T Consensus 92 ~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 92 KTLGIEKVDGILMDL 106 (301)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HhcCCCCCCEEEEcC
Confidence 0111 4799999875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-07 Score=92.70 Aligned_cols=90 Identities=4% Similarity=0.026 Sum_probs=69.8
Q ss_pred cCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEE
Q 044245 384 YGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEI 462 (694)
Q Consensus 384 l~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~v 462 (694)
++=+.|-+ +|.+.+. ++..|+||||| |+|++.+|+.|.+.+|+|+|- ++.+.+.|++.++.||++ ++|++
T Consensus 6 ~~Ls~RL~----~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi--~~~al~~A~~N~~~~gl~-~~I~v 76 (244)
T 3gnl_A 6 EQLSKRLE----KVASYIT--KNERIADIGSDHAYLPCFAVKNQTASFAIAGEV--VDGPFQSAQKQVRSSGLT-EQIDV 76 (244)
T ss_dssp CCCCHHHH----HHHTTCC--SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEES--SHHHHHHHHHHHHHTTCT-TTEEE
T ss_pred cchhHHHH----HHHHhCC--CCCEEEEECCccHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-ceEEE
Confidence 33455554 4555554 56789999999 999999999965779999999 788888999999999998 89999
Q ss_pred eecccccccccccCC-ccccEEEcc
Q 044245 463 LQKGKKCLTMDDTQQ-KKVDLLIGE 486 (694)
Q Consensus 463 i~~~~~~~~~~~l~~-~~vDvivsE 486 (694)
+.++.-+. +.+ +++|+||.-
T Consensus 77 ~~gD~l~~----~~~~~~~D~Ivia 97 (244)
T 3gnl_A 77 RKGNGLAV----IEKKDAIDTIVIA 97 (244)
T ss_dssp EECSGGGG----CCGGGCCCEEEEE
T ss_pred Eecchhhc----cCccccccEEEEe
Confidence 99864322 222 359998864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.2e-07 Score=93.66 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=63.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++.. ..+|+|+|+++.|++.++++. .++++++++|+.+++++.
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~--------~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATP--------GSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGS 106 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBT--------TBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGG
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCc--------CCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhH
Confidence 4568899999999999999999987500 123999999999999999883 358999999999887543
Q ss_pred CCC-C--CccEEEEcccc
Q 044245 144 DID-S--RADILVSEILD 158 (694)
Q Consensus 144 ~l~-~--~~DlIvse~~~ 158 (694)
..+ . ....||+|+.+
T Consensus 107 ~~~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 107 IARPGDEPSLRIIGNLPY 124 (279)
T ss_dssp GSCSSSSCCEEEEEECCH
T ss_pred hcccccCCceEEEEccCc
Confidence 211 1 34578888655
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=88.96 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=80.3
Q ss_pred HHHHHHHHhc-CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQ-GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~-~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+.+++.+... ..+++.|||+||| |.+++.+++.| +.+|+++|. ++.+.+.+++.++.|++. ++++++.++..+.
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEK--NFAALKVIKENIAITKEP-EKFEVRKMDANRA 106 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHHTCG-GGEEEEESCHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHHHHHhCCC-cceEEEECcHHHH
Confidence 4444444443 2467899999999 99999888875 789999999 777778889999999987 7999999987653
Q ss_pred ccc-ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMD-DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~-~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
... ....++.|+|++.+-|.. ...+ ..+.. .. + .++|+|||.++
T Consensus 107 ~~~~~~~~~~fD~i~~~~~~~~--~~~~-~~~~~--l~-~-~~~L~~gG~l~ 151 (187)
T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYAK--QEIV-SQLEK--ML-E-RQLLTNEAVIV 151 (187)
T ss_dssp HHHHHHTTCCEEEEEECCCGGG--CCHH-HHHHH--HH-H-TTCEEEEEEEE
T ss_pred HHHHHhcCCCCCEEEECCCCCc--hhHH-HHHHH--HH-H-hcccCCCCEEE
Confidence 211 001467999999853331 2222 22211 11 1 45799999654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-08 Score=103.53 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=62.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.|+++++ + .++++++++|..+++.+.
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~~------------~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKISK------------QVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSS------------EEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTTCCC
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCC------------eEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcCccc
Confidence 45678999999999999999999864 89999999999999987664 2 358999999998876421
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
.++| .|++++..
T Consensus 92 --~~~f-~vv~n~Py 103 (245)
T 1yub_A 92 --KQRY-KIVGNIPY 103 (245)
T ss_dssp --SSEE-EEEEECCS
T ss_pred --CCCc-EEEEeCCc
Confidence 2468 78888655
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7e-07 Score=91.06 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=72.9
Q ss_pred CEEEEEcCCC---CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc---
Q 044245 68 CHVLDIGAGT---GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV--- 141 (694)
Q Consensus 68 ~~VLDiG~Gt---G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~--- 141 (694)
..|||||||+ |.+...+.+..+ ..+|+++|.|+.|++.|++++..++ ..+++++++|+.++..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P----------~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~ 148 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAP----------ESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILD 148 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCT----------TCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCC----------CCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhc
Confidence 6899999996 445444444433 4699999999999999998876543 2489999999988631
Q ss_pred -c-----cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 142 -G-----VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 -~-----~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+ -++.+++ .|+++.+-+++-.+.....++..+.+.|+|||.++-.
T Consensus 149 ~~~~~~~~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls 199 (277)
T 3giw_A 149 APELRDTLDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS 199 (277)
T ss_dssp CHHHHTTCCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred ccccccccCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence 0 1222333 4566544444432222456676777899999998744
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-07 Score=94.83 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=65.6
Q ss_pred cCC--CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-------cC-CCCcEEEEec
Q 044245 65 TKS--CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-------NG-MGRNIKVINK 134 (694)
Q Consensus 65 ~~~--~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-------ng-l~~~I~vi~~ 134 (694)
.++ .+|||+|||+|..++.+|+.|+ +|+++|.++.+++.++++++. |+ +.++|+++++
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g~------------~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVGC------------RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHTC------------CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcCC------------EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 556 8999999999999999999875 799999999988888777643 23 4358999999
Q ss_pred cccccccccCCCCCccEEEEcccccc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSE 160 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~ 160 (694)
|..++.. .++++||+|+.+++...
T Consensus 153 D~~~~L~--~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 153 SSLTALT--DITPRPQVVYLDPMFPH 176 (258)
T ss_dssp CHHHHST--TCSSCCSEEEECCCCCC
T ss_pred CHHHHHH--hCcccCCEEEEcCCCCC
Confidence 9887531 23357999999987743
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=94.29 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=67.5
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc---CCcccccEEEeecccccccc----c
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP---NCFSIDRVEILQKGKKCLTM----D 473 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~---N~l~~~~i~vi~~~~~~~~~----~ 473 (694)
...++..|||+||| |.+++++|+.+...+|+++|. ++.+.+.+++.++. |+++ ++|++++++..++.. .
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi--~~~~~~~a~~n~~~~~~~~l~-~~v~~~~~D~~~~~~~~~~~ 109 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYER--SQEMAEFARRSLELPDNAAFS-ARIEVLEADVTLRAKARVEA 109 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEES--SHHHHHHHHHHTTSGGGTTTG-GGEEEEECCTTCCHHHHHHT
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHHHhhhhCCCc-ceEEEEeCCHHHHhhhhhhh
Confidence 33456789999999 999998888753579999999 78778889999999 9998 899999998776622 1
Q ss_pred ccCCccccEEEcc-cccc
Q 044245 474 DTQQKKVDLLIGE-PYYF 490 (694)
Q Consensus 474 ~l~~~~vDvivsE-~~~~ 490 (694)
.++.+++|+||+- ||+.
T Consensus 110 ~~~~~~fD~Vv~nPPy~~ 127 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYND 127 (260)
T ss_dssp TCCTTCEEEEEECCCC--
T ss_pred ccCCCCcCEEEECCCCcC
Confidence 2335789999998 4554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-07 Score=88.19 Aligned_cols=110 Identities=11% Similarity=-0.014 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+..+.+.....++..|||+||| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.+|+ ++++++.+...+...
T Consensus 29 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 29 RAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALER--NPQYLGFIRDNLKKFVA--RNVTLVEAFAPEGLD 104 (204)
T ss_dssp HHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEEC--CHHHHHHHHHHHHHHTC--TTEEEEECCTTTTCT
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHhCC--CcEEEEeCChhhhhh
Confidence 3445555555577899999999 999999999865789999999 77777788888888998 589999987643321
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+++|+|++...+.. +. ..+ ....+.|+|||+++
T Consensus 105 ---~~~~~D~i~~~~~~~~----~~-~~l------~~~~~~LkpgG~l~ 139 (204)
T 3e05_A 105 ---DLPDPDRVFIGGSGGM----LE-EII------DAVDRRLKSEGVIV 139 (204)
T ss_dssp ---TSCCCSEEEESCCTTC----HH-HHH------HHHHHHCCTTCEEE
T ss_pred ---cCCCCCEEEECCCCcC----HH-HHH------HHHHHhcCCCeEEE
Confidence 1256999998752110 11 111 11223699999765
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-08 Score=104.61 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=68.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH-HHcCCCCcEEEE--eccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL-HVNGMGRNIKVI--NKRSDELE 140 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~-~~ngl~~~I~vi--~~~~~~l~ 140 (694)
+.++.+|||||||+|.++..+++. + +|+|+|.++ |+..+++.. ..+....+|.++ ++|+.+++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~-~------------~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR-P------------HVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP 137 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS-T------------TEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc-C------------cEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence 557889999999999999999887 3 799999987 533222110 001111268888 88888764
Q ss_pred cccCCCCCccEEEEccccccccCCChHH-----HHHHHHHhccCCCC--eEEc
Q 044245 141 VGVDIDSRADILVSEILDSELLGEGLIP-----TLQHAHDRLLVENP--LTVP 186 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~~l~-----~l~~~~~~~L~p~G--~iiP 186 (694)
+++||+|+|+.. . ..+....+ .++....++|+||| .++-
T Consensus 138 -----~~~fD~V~sd~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 138 -----VERTDVIMCDVG-E-SSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp -----CCCCSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred -----CCCCcEEEEeCc-c-cCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 268999999755 2 22211111 14556667999999 7763
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-07 Score=89.95 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=67.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE-eccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI-NKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi-~~~~~~l~~~ 142 (694)
+.++.+|||||||+|.++..+++..+.... ....+..+|+++|.++.+ .+ .+++++ .+|..+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~-~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGT-DPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTS 86 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCC-CTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccc-cccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHH
Confidence 567899999999999999999998531000 000011589999998731 23 368888 8887654311
Q ss_pred c----CC-CCCccEEEEccccccccCC--Ch------HHHHHHHHHhccCCCCeEE
Q 044245 143 V----DI-DSRADILVSEILDSELLGE--GL------IPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~----~l-~~~~DlIvse~~~~~l~~e--~~------l~~l~~~~~~~L~p~G~ii 185 (694)
. .+ .++||+|+++......... .. ...++....++|+|||+++
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 142 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFL 142 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 0 01 1479999996422111110 00 1244555677999999886
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-07 Score=87.84 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++.+|+. ..+|+++|. ++.+.+.|++.++.+|+ ++|+++.+..+++.. ..++++|+|
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~--s~~~l~~a~~~~~~~~~--~~v~~~~~~~~~l~~--~~~~~fD~v 93 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDV--QEQALGKTSQRLSDLGI--ENTELILDGHENLDH--YVREPIRAA 93 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT--SSEEEEEES--CHHHHHHHHHHHHHHTC--CCEEEEESCGGGGGG--TCCSCEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEEC--CHHHHHHHHHHHHHcCC--CcEEEEeCcHHHHHh--hccCCcCEE
Confidence 67899999999 9999999998 479999999 77777788888998998 589999876665432 225789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-+
T Consensus 94 ~~~~ 97 (185)
T 3mti_A 94 IFNL 97 (185)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9874
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-08 Score=103.31 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=66.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcC----CHHHHHHHHHHHHHcCCCCcEEEEec-cccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACES----YLPMVKLMKKVLHVNGMGRNIKVINK-RSDE 138 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~----s~~~~~~A~~~~~~ngl~~~I~vi~~-~~~~ 138 (694)
+.++.+|||||||+|.++..+++. + +|+|+|. ++.+++.++ .+..+. ++|+++.+ |..+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~-~------------~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~ 143 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL-K------------NVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFF 143 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS-T------------TEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc-C------------CEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEecccccc
Confidence 456789999999999999999987 3 7999998 554332111 111122 47999998 7776
Q ss_pred cccccCCCCCccEEEEccccccccC---C-ChHHHHHHHHHhccCCCCeEEc
Q 044245 139 LEVGVDIDSRADILVSEILDSELLG---E-GLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~l~~---e-~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++ +++||+|+|+...+.... + ..+ .++....++|+|||.++-
T Consensus 144 l~-----~~~fD~V~sd~~~~~g~~~~d~~~~l-~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 144 IP-----PERCDTLLCDIGESSPNPTVEAGRTL-RVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp SC-----CCCCSEEEECCCCCCSSHHHHHHHHH-HHHHHHHHHCCTTCEEEE
T ss_pred CC-----cCCCCEEEECCccccCcchhhHHHHH-HHHHHHHHHhCCCCEEEE
Confidence 53 258999999764321110 0 011 234455679999998763
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-07 Score=93.30 Aligned_cols=101 Identities=9% Similarity=0.042 Sum_probs=75.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |++++..|+.....+|+++|. ++.+.+.++++++.+|++ + |++++++.+++.......++.|+|
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~l~-~-v~~~~~d~~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDA--TRKKVAFVERAIEVLGLK-G-ARALWGRAEVLAREAGHREAYARA 155 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHTCS-S-EEEEECCHHHHTTSTTTTTCEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC-c-eEEEECcHHHhhcccccCCCceEE
Confidence 46789999999 999998888733679999999 777778899999999996 4 999999988775421123689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|-- +.++..+ . ....++|+|||+++
T Consensus 156 ~s~a-------~~~~~~l---l--~~~~~~LkpgG~l~ 181 (249)
T 3g89_A 156 VARA-------VAPLCVL---S--ELLLPFLEVGGAAV 181 (249)
T ss_dssp EEES-------SCCHHHH---H--HHHGGGEEEEEEEE
T ss_pred EECC-------cCCHHHH---H--HHHHHHcCCCeEEE
Confidence 9963 2222222 1 11234799999765
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=86.00 Aligned_cols=116 Identities=10% Similarity=-0.022 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc----cEEEeecccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID----RVEILQKGKK 468 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~----~i~vi~~~~~ 468 (694)
.+.|.+.....+++.|||+||| |.++..+++.++..+|+++|. ++.+.+.+++.++.+++. + +|+++.+..+
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDV--SYRSLEIAQERLDRLRLP-RNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEES--CHHHHHHHHHHHTTCCCC-HHHHTTEEEEECCTT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEEC--CHHHHHHHHHHHHHhcCC-cccCcceEEEeCCcc
Confidence 3444444444567899999999 999988888765679999999 777777888888888886 5 8999998754
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
... ...++.|+|++-..+. .++-..+. -.-..+.+.|+|||.++
T Consensus 95 ~~~---~~~~~fD~v~~~~~l~----~~~~~~~~--~~l~~~~~~LkpgG~li 138 (217)
T 3jwh_A 95 YQD---KRFHGYDAATVIEVIE----HLDLSRLG--AFERVLFEFAQPKIVIV 138 (217)
T ss_dssp SCC---GGGCSCSEEEEESCGG----GCCHHHHH--HHHHHHHTTTCCSEEEE
T ss_pred ccc---ccCCCcCEEeeHHHHH----cCCHHHHH--HHHHHHHHHcCCCEEEE
Confidence 332 2246899999753211 11211111 11122235799999665
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=84.15 Aligned_cols=89 Identities=15% Similarity=0.052 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+.+.+..... .++..|||+||| |.++..+|+. |+..+|+++|. ++.+.+.+++.++.+|+. ++++++.++.+++
T Consensus 11 ~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~ 86 (197)
T 3eey_A 11 QSHDYIKMFV-KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDI--QDKAIANTTKKLTDLNLI-DRVTLIKDGHQNM 86 (197)
T ss_dssp HHHHHHHHHC-CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECS--CHHHHHHHHHHHHHTTCG-GGEEEECSCGGGG
T ss_pred HHHHHHHhcC-CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH
Confidence 4444444432 367899999999 8888877776 32569999999 777777889999999997 7999999987766
Q ss_pred cccccCCccccEEEccc
Q 044245 471 TMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~ 487 (694)
.. ..++++|+|++-+
T Consensus 87 ~~--~~~~~fD~v~~~~ 101 (197)
T 3eey_A 87 DK--YIDCPVKAVMFNL 101 (197)
T ss_dssp GG--TCCSCEEEEEEEE
T ss_pred hh--hccCCceEEEEcC
Confidence 42 2247899999875
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=92.43 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=85.3
Q ss_pred HhhCCHHHHHHHHHHHHhh-------------ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH
Q 044245 45 DMLNDSYRNRAYRLAIDKM-------------VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP 111 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~-------------~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~ 111 (694)
.+..+..+...|.+++... .....+|+|||||+|.++..++++.+ ..+++..|. |.
T Consensus 145 ~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p----------~~~~~~~dl-p~ 213 (353)
T 4a6d_A 145 AIYRSEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYP----------GCKITVFDI-PE 213 (353)
T ss_dssp HHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCS----------SCEEEEEEC-HH
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCC----------CceeEeccC-HH
Confidence 3445566666666655421 23457999999999999999999986 568888997 89
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 112 MVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 112 ~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++.|++++...+ .+||+++.+|+.+.+. ..+|+++...+-+.. .+.....++..+++.|+|||+++
T Consensus 214 v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-----~~~D~~~~~~vlh~~-~d~~~~~iL~~~~~al~pgg~ll 280 (353)
T 4a6d_A 214 VVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-----PEADLYILARVLHDW-ADGKCSHLLERIYHTCKPGGGIL 280 (353)
T ss_dssp HHHHHHHHSCC---CCSEEEEESCTTTSCC-----CCCSEEEEESSGGGS-CHHHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHhhhhcc-cCceeeecCccccCCC-----CCceEEEeeeecccC-CHHHHHHHHHHHHhhCCCCCEEE
Confidence 9999998876554 5799999999875322 358998874222111 12223345666677899999876
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.9e-07 Score=94.85 Aligned_cols=116 Identities=10% Similarity=0.097 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHH-------hccCCcccccEEEee
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTV-------ADPNCFSIDRVEILQ 464 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i-------~~~N~l~~~~i~vi~ 464 (694)
+.+.| +.....++.+||||||| |-+++.+|+..|+++|++||- ++.+.++|++. ++.+|+..++|++++
T Consensus 162 i~~il-~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDi--S~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 162 VAQMI-DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEK--ADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHH-HHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHH-HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 33344 34444578899999999 988887775434889999999 66555666553 355777336899999
Q ss_pred cccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 465 KGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 465 ~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++.++...+. ...+|+|++..++.. ..+.- ..+..+ +.|||||+++
T Consensus 239 GD~~~lp~~d~-~~~aDVVf~Nn~~F~-------pdl~~-aL~Ei~-RvLKPGGrIV 285 (438)
T 3uwp_A 239 GDFLSEEWRER-IANTSVIFVNNFAFG-------PEVDH-QLKERF-ANMKEGGRIV 285 (438)
T ss_dssp CCTTSHHHHHH-HHTCSEEEECCTTCC-------HHHHH-HHHHHH-TTSCTTCEEE
T ss_pred CcccCCccccc-cCCccEEEEcccccC-------chHHH-HHHHHH-HcCCCCcEEE
Confidence 98876654211 146999999865321 22211 112222 4699999876
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-07 Score=89.86 Aligned_cols=84 Identities=18% Similarity=0.092 Sum_probs=62.4
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..++ .+|+++|.++. +++++.++..+++.+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~---------------~~v~~~D~s~~----------------~~~~~~~d~~~~~~~-- 112 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR---------------NPVHCFDLASL----------------DPRVTVCDMAQVPLE-- 112 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC---------------SCEEEEESSCS----------------STTEEESCTTSCSCC--
T ss_pred CCCCeEEEECCcCCHHHHHhh---------------ccEEEEeCCCC----------------CceEEEeccccCCCC--
Confidence 457899999999999887662 38999999876 456788888876532
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...- +......++..+.++|+|||.++-
T Consensus 113 -~~~fD~v~~~~~l----~~~~~~~~l~~~~~~L~~gG~l~i 149 (215)
T 2zfu_A 113 -DESVDVAVFCLSL----MGTNIRDFLEEANRVLKPGGLLKV 149 (215)
T ss_dssp -TTCEEEEEEESCC----CSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCEeEEEEehhc----cccCHHHHHHHHHHhCCCCeEEEE
Confidence 3689999984322 223456666677789999998763
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=89.20 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+++.......++..|||+||| |.++..+|+.+ ..+|+++|. ++.+.+.+++.++.+|++ ++|+++.+..+++..
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~- 110 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYV-KGQITGIDL--FPDFIEIFNENAVKANCA-DRVKGITGSMDNLPF- 110 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC-CSEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCSS-
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC-CCeEEEEEC--CHHHHHHHHHHHHHcCCC-CceEEEECChhhCCC-
Confidence 333333233456799999999 99998888886 359999999 777777888889999998 889999998766542
Q ss_pred ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 474 ~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.++.|+|++...+. .+ ++..+ -..+.+.|+|||.++
T Consensus 111 --~~~~fD~v~~~~~l~---~~-~~~~~-----l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 111 --QNEELDLIWSEGAIY---NI-GFERG-----MNEWSKYLKKGGFIA 147 (257)
T ss_dssp --CTTCEEEEEEESCSC---CC-CHHHH-----HHHHHTTEEEEEEEE
T ss_pred --CCCCEEEEEecChHh---hc-CHHHH-----HHHHHHHcCCCcEEE
Confidence 357899999975222 11 21211 122345799999765
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=94.62 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+..+|||||||+|.++..++++.+ ..+++++|. +.+++.|++. .+|+++.+|+.+ +.
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~---- 259 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYP----------SINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV---- 259 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCC----------CCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC----
Confidence 358999999999999999999875 468999999 8888776531 489999999876 33
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.. |+|++..+-+.. .+.....++..+++.|+|||+++-
T Consensus 260 p~~-D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 260 PKG-DAIFIKWICHDW-SDEHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp CCC-SEEEEESCGGGB-CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCC-CEEEEechhhcC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 233 999885332211 122233566667789999998763
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.3e-07 Score=93.05 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=60.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++. +++ ++ ..+|+|+|+++.|++.++++...+ ++++++++|+.+++++.
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~~-~~----------~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PVG-ER----------LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HHH-TT----------CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHH
T ss_pred CCCcCEEEEECCCCcHHHH-hhh-CC----------CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHH
Confidence 4567899999999999999 654 43 123999999999999998766432 48999999998876432
Q ss_pred CC--CCCccEEEEcccc
Q 044245 144 DI--DSRADILVSEILD 158 (694)
Q Consensus 144 ~l--~~~~DlIvse~~~ 158 (694)
.. ++..+.||+++.+
T Consensus 84 ~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 84 LAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHTSCEEEEEECCT
T ss_pred hhcccCCceEEEECCCC
Confidence 11 1245799998765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=89.72 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=76.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..||||||| |.++..+|+.+ ..+|+++|. ++.+.+.+++.++.+|++ ++|+++.+..+++.. +.++.|+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~---~~~~fD~ 117 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHV-TGQVTGLDF--LSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPF---RNEELDL 117 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTC-SSEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCC---CTTCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCEEEEEeC--CHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCC---CCCCEEE
Confidence 457899999999 99999888885 679999999 777777888888999997 899999998776542 3578999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++-..+.. + ++.. .-..+.+.|+|||.++
T Consensus 118 i~~~~~~~~---~-~~~~-----~l~~~~~~LkpgG~l~ 147 (267)
T 3kkz_A 118 IWSEGAIYN---I-GFER-----GLNEWRKYLKKGGYLA 147 (267)
T ss_dssp EEESSCGGG---T-CHHH-----HHHHHGGGEEEEEEEE
T ss_pred EEEcCCcee---c-CHHH-----HHHHHHHHcCCCCEEE
Confidence 999753221 2 2111 1122345799999776
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-06 Score=80.10 Aligned_cols=109 Identities=14% Similarity=0.025 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
++.+.+.....++..|||+||| |.++..+|+..+..+|+++|. ++.+.+.+++.++.+|+. +++ ++.+...+ ..
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~-~~ 88 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEI--SEERRERILSNAINLGVS-DRI-AVQQGAPR-AF 88 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECS--CHHHHHHHHHHHHTTTCT-TSE-EEECCTTG-GG
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHHHHHHhCCC-CCE-EEecchHh-hh
Confidence 3444444555567899999999 988888888633689999999 776677888889999997 789 77776532 11
Q ss_pred cccCCccccEEEccccccCCccccCc-chhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPW-QNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w-~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
... .+++|+|++-.. +.+ ..+. ...+.|+|||.++
T Consensus 89 ~~~-~~~~D~i~~~~~-------~~~~~~l~------~~~~~L~~gG~l~ 124 (178)
T 3hm2_A 89 DDV-PDNPDVIFIGGG-------LTAPGVFA------AAWKRLPVGGRLV 124 (178)
T ss_dssp GGC-CSCCSEEEECC--------TTCTTHHH------HHHHTCCTTCEEE
T ss_pred hcc-CCCCCEEEECCc-------ccHHHHHH------HHHHhcCCCCEEE
Confidence 111 268999997641 111 1221 1123699999765
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-07 Score=98.32 Aligned_cols=71 Identities=15% Similarity=0.010 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||+|||+|.+++.+++... +..+|+|+|+++.+++.| .+++++++|..+...
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~---------~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~---- 95 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHG---------TAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEP---- 95 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHC---------SCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCC----
T ss_pred CCCEEEECCCCChHHHHHHHHHhC---------CCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCc----
Confidence 467999999999999999998742 126999999999998776 379999999887542
Q ss_pred CCCccEEEEccccc
Q 044245 146 DSRADILVSEILDS 159 (694)
Q Consensus 146 ~~~~DlIvse~~~~ 159 (694)
.++||+|++++...
T Consensus 96 ~~~fD~Ii~NPPy~ 109 (421)
T 2ih2_A 96 GEAFDLILGNPPYG 109 (421)
T ss_dssp SSCEEEEEECCCCC
T ss_pred cCCCCEEEECcCcc
Confidence 36899999987553
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=87.97 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
.|.+++.+.... +|..||||||| |+.+...|+.+ ..+|++||. ++.+.+.|++..+.++. +++++.+..+++
T Consensus 48 ~~m~~~a~~~~~-~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~--~~~~~~~a~~~~~~~~~---~~~~~~~~a~~~ 120 (236)
T 3orh_A 48 PYMHALAAAASS-KGGRVLEVGFGMAIAASKVQEAP-IDEHWIIEC--NDGVFQRLRDWAPRQTH---KVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECCTTSHHHHHHTTSC-EEEEEEEEC--CHHHHHHHHHHGGGCSS---EEEEEESCHHHH
T ss_pred HHHHHHHHhhcc-CCCeEEEECCCccHHHHHHHHhC-CcEEEEEeC--CHHHHHHHHHHHhhCCC---ceEEEeehHHhh
Confidence 466666666543 67799999999 99998888875 578999999 67666778888877765 588888877765
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.. .++.+..|.|+..++... +.........+ ......++|||||+++
T Consensus 121 ~~-~~~~~~FD~i~~D~~~~~-~~~~~~~~~~~--~~~e~~rvLkPGG~l~ 167 (236)
T 3orh_A 121 AP-TLPDGHFDGILYDTYPLS-EETWHTHQFNF--IKNHAFRLLKPGGVLT 167 (236)
T ss_dssp GG-GSCTTCEEEEEECCCCCB-GGGTTTHHHHH--HHHTHHHHEEEEEEEE
T ss_pred cc-cccccCCceEEEeeeecc-cchhhhcchhh--hhhhhhheeCCCCEEE
Confidence 43 344577999987764332 12221111211 1122345899999874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-07 Score=90.38 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=61.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.++++ + ..+++++++|+.+++++.
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~-----------~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPL-----------KKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCS 92 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCC-----------SEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGG
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCC-----------CeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhH
Confidence 45688999999999999999998853 5999999999999999876 2 348999999999887543
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
+... ..|++|+.+
T Consensus 93 -~~~~-~~vv~NlPy 105 (249)
T 3ftd_A 93 -LGKE-LKVVGNLPY 105 (249)
T ss_dssp -SCSS-EEEEEECCT
T ss_pred -ccCC-cEEEEECch
Confidence 2223 378888655
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-07 Score=91.75 Aligned_cols=110 Identities=15% Similarity=0.029 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 388 EWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 388 ~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
.-+..+.+++.+.. .+++.|||+||| |++++.+++.| + +|+++|. ++.+.+.+++.++.|++ + ++++.+.
T Consensus 105 ~tt~~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g-~-~v~gvDi--~~~~v~~a~~n~~~~~~--~-v~~~~~d 175 (254)
T 2nxc_A 105 ETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLG-G-KALGVDI--DPMVLPQAEANAKRNGV--R-PRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTT-C-EEEEEES--CGGGHHHHHHHHHHTTC--C-CEEEESC
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhC-C-eEEEEEC--CHHHHHHHHHHHHHcCC--c-EEEEECC
Confidence 33555667777664 367899999999 99999999996 6 9999999 77777788888989988 3 8888876
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+. ++.+++|+||+-+... .+.- ..+ .+.+.|+|||.++
T Consensus 176 ~~~~----~~~~~fD~Vv~n~~~~---------~~~~-~l~-~~~~~LkpgG~li 215 (254)
T 2nxc_A 176 LEAA----LPFGPFDLLVANLYAE---------LHAA-LAP-RYREALVPGGRAL 215 (254)
T ss_dssp HHHH----GGGCCEEEEEEECCHH---------HHHH-HHH-HHHHHEEEEEEEE
T ss_pred hhhc----CcCCCCCEEEECCcHH---------HHHH-HHH-HHHHHcCCCCEEE
Confidence 5442 2346799999864211 1110 111 1234689999765
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=84.48 Aligned_cols=113 Identities=8% Similarity=-0.054 Sum_probs=75.8
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc----cEEEeeccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID----RVEILQKGKKCLT 471 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~----~i~vi~~~~~~~~ 471 (694)
|.+.....+++.|||+||| |.++..+++.++..+|+++|. ++.+.+.+++.+..++++ + +|+++.+..+.+.
T Consensus 21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 21 VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDV--SYSVLERAKDRLKIDRLP-EMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEES--CHHHHHHHHHHHTGGGSC-HHHHTTEEEEECCSSSCC
T ss_pred HHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHHHhhccc-cccCcceEEEeCcccccc
Confidence 3333333467899999999 988888888764589999999 777777888888888886 5 8999998764433
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
...++.|+|++-.... .++...+. -.-..+.+.|+|||.++
T Consensus 98 ---~~~~~fD~V~~~~~l~----~~~~~~~~--~~l~~~~~~LkpgG~~i 138 (219)
T 3jwg_A 98 ---KRFSGYDAATVIEVIE----HLDENRLQ--AFEKVLFEFTRPQTVIV 138 (219)
T ss_dssp ---GGGTTCSEEEEESCGG----GCCHHHHH--HHHHHHHTTTCCSEEEE
T ss_pred ---cccCCCCEEEEHHHHH----hCCHHHHH--HHHHHHHHhhCCCEEEE
Confidence 2346899999753111 12211111 11122335799999665
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.32 E-value=7.7e-07 Score=98.15 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCcc----CCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEeccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTS----LNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELE 140 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~----~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~ 140 (694)
++.+|||.|||||.+.+.+++....... .. ..+..+++|+|+++.+++.|+.++..+|+.. ++.++++|.....
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~-~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSA-SKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC--CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcC-CHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 3679999999999999988876310000 00 0002479999999999999999999898853 6788889877643
Q ss_pred cccCCCCCccEEEEccccccccCCC--------------hHHHHHHHHHhccCCCCeE
Q 044245 141 VGVDIDSRADILVSEILDSELLGEG--------------LIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e~--------------~l~~l~~~~~~~L~p~G~i 184 (694)
. .++||+|++++.....-... ..-.++....++|+|||++
T Consensus 250 ~----~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~ 303 (445)
T 2okc_A 250 P----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 303 (445)
T ss_dssp C----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred c----cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence 2 24899999998654321100 0113334444589999865
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=93.14 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+..+|||||||+|.++..++++.+ ..+++++|. +.+++.|++ . ++|+++.+|+.+ +.
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~D~~~-~~---- 257 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYP----------TIKGVNFDL-PHVISEAPQ------F-PGVTHVGGDMFK-EV---- 257 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CC----
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC----------CCeEEEecC-HHHHHhhhh------c-CCeEEEeCCcCC-CC----
Confidence 468999999999999999999875 468999999 888877653 1 489999999876 43
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+.. |+|++..+-+.. .+.....++..+++.|+|||+++-
T Consensus 258 p~~-D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 258 PSG-DTILMKWILHDW-SDQHCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp CCC-SEEEEESCGGGS-CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCC-CEEEehHHhccC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 223 999874322211 122234566667789999998863
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=90.26 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=64.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.+++.+|+.+++.+|+++|. ++.+.+.|++.++.||++ +++++.++.+++ .. .++.|+
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~--s~~av~~a~~n~~~n~l~--~~~~~~~d~~~~-~~---~~~~D~ 189 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEK--NPTAYHYLCENIKLNKLN--NVIPILADNRDV-EL---KDVADR 189 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEEC--CHHHHHHHHHHHHHTTCS--SEEEEESCGGGC-CC---TTCEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC--CEEEEECChHHc-Cc---cCCceE
Confidence 367899999999 999999998855779999999 888888999999999995 588999988766 21 467999
Q ss_pred EEcccc
Q 044245 483 LIGEPY 488 (694)
Q Consensus 483 ivsE~~ 488 (694)
||+.+-
T Consensus 190 Vi~d~p 195 (272)
T 3a27_A 190 VIMGYV 195 (272)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 999863
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=95.12 Aligned_cols=111 Identities=10% Similarity=0.004 Sum_probs=77.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc-cEEEeeccccccccccc--CCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID-RVEILQKGKKCLTMDDT--QQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~-~i~vi~~~~~~~~~~~l--~~~~v 480 (694)
+++.|||+||| |.+++.+|+.| |++|+++|. ++.+.+.|++.++.||++ + +++++.+++.+.-. .+ .+++.
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~--s~~al~~A~~N~~~n~~~-~~~v~~~~~D~~~~l~-~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDL--AKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFK-YARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEES--CTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHH-HHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEEC--CHHHHHHHHHHHHHcCCC-ccceEEEECCHHHHHH-HHHHhCCCc
Confidence 57899999999 99999999985 899999999 777778899999999996 5 89999998765321 11 13579
Q ss_pred cEEEccc-cccCCccccCcchhhHH--HHHhhcccccCCCceEEc
Q 044245 481 DLLIGEP-YYFGNDGMLPWQNLRFW--KERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 481 DvivsE~-~~~~~e~~l~w~~l~f~--~~r~~~~~~L~p~g~i~P 522 (694)
|+||+.| ++....+.+. +.+..+ ..+. ..++|+|||.++=
T Consensus 287 D~Ii~DPP~~~~~~~~~~-~~~~~~~~ll~~-~~~~L~pgG~l~~ 329 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVF-SVSKDYHKLIRQ-GLEILSENGLIIA 329 (385)
T ss_dssp EEEEECCCCC-----CCC-CHHHHHHHHHHH-HHHTEEEEEEEEE
T ss_pred cEEEECCCCCCCChhhHH-HHHHHHHHHHHH-HHHhcCCCcEEEE
Confidence 9999985 4431112333 333211 1111 1246999986643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=86.78 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=74.3
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC----Cc
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ----QK 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~----~~ 478 (694)
+++.||||||| |.+++..|++ +...+|+++|. ++.+.+.+++.++.+|++ ++|+++.++..+.-. .+. .+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~-~~~~~~~~~ 133 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEI--NPDCAAITQQMLNFAGLQ-DKVTILNGASQDLIP-QLKKKYDVD 133 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHGG-GTTTTSCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeC--ChHHHHHHHHHHHHcCCC-CceEEEECCHHHHHH-HHHHhcCCC
Confidence 56789999999 9999988885 21469999999 777777889999999998 899999998765321 221 26
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
++|+|+...... ...+ .+. +. ... ++|+|||.++=+
T Consensus 134 ~fD~V~~d~~~~---~~~~--~~~--~~-~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 134 TLDMVFLDHWKD---RYLP--DTL--LL-EKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CCSEEEECSCGG---GHHH--HHH--HH-HHT-TCCCTTCEEEES
T ss_pred ceEEEEEcCCcc---cchH--HHH--HH-Hhc-cccCCCeEEEEe
Confidence 799999874211 1111 111 11 122 579999987644
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.29 E-value=8e-07 Score=83.73 Aligned_cols=101 Identities=6% Similarity=-0.024 Sum_probs=70.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc--CCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT--QQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l--~~~~vD 481 (694)
+++.|||+||| |.+++.+++.| ++ |+++|. ++.+.+.+++.++.+++ +++++.++..+... .+ ..++.|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~-~~-v~~vD~--~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG-WE-AVLVEK--DPEAVRLLKENVRRTGL---GARVVALPVEVFLP-EAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT-CE-EEEECC--CHHHHHHHHHHHHHHTC---CCEEECSCHHHHHH-HHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC-Ce-EEEEeC--CHHHHHHHHHHHHHcCC---ceEEEeccHHHHHH-hhhccCCceE
Confidence 56789999999 99999999986 65 999999 77777788888888776 58899887665321 11 124799
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++.+-|. ...+ +.+..+.. .++|+|||.++
T Consensus 113 ~i~~~~~~~---~~~~-~~~~~~~~----~~~L~~gG~~~ 144 (171)
T 1ws6_A 113 VAFMAPPYA---MDLA-ALFGELLA----SGLVEAGGLYV 144 (171)
T ss_dssp EEEECCCTT---SCTT-HHHHHHHH----HTCEEEEEEEE
T ss_pred EEEECCCCc---hhHH-HHHHHHHh----hcccCCCcEEE
Confidence 999986332 2233 33322121 24799998654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=85.84 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
...+++..... +++.|||+||| |.++..+++.| +.+|+++|. ++.+.+.+++.++.+++. + |+++.++..+.
T Consensus 49 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~~~~~~-~-v~~~~~d~~~~ 121 (205)
T 3grz_A 49 LAMLGIERAMV--KPLTVADVGTGSGILAIAAHKLG-AKSVLATDI--SDESMTAAEENAALNGIY-D-IALQKTSLLAD 121 (205)
T ss_dssp HHHHHHHHHCS--SCCEEEEETCTTSHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHTTCC-C-CEEEESSTTTT
T ss_pred HHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHCC-CCEEEEEEC--CHHHHHHHHHHHHHcCCC-c-eEEEecccccc
Confidence 34444554432 57899999999 99999999986 789999999 777777888889999986 5 99999875542
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.+++.|+|++-+.+. .+. -.-....+.|+|||.++
T Consensus 122 -----~~~~fD~i~~~~~~~---------~~~--~~l~~~~~~L~~gG~l~ 156 (205)
T 3grz_A 122 -----VDGKFDLIVANILAE---------ILL--DLIPQLDSHLNEDGQVI 156 (205)
T ss_dssp -----CCSCEEEEEEESCHH---------HHH--HHGGGSGGGEEEEEEEE
T ss_pred -----CCCCceEEEECCcHH---------HHH--HHHHHHHHhcCCCCEEE
Confidence 247899999975221 110 11223345799999665
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=93.60 Aligned_cols=98 Identities=9% Similarity=0.065 Sum_probs=71.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..++++++ ..+++++|. +.+++.|++ . .+|+++.+|+.+ +.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~----------~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~--- 265 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYP----------LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA-SV--- 265 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC----------CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc-CC---
Confidence 3468999999999999999999875 468999999 999887764 2 369999999876 32
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+. +|+|++..+-+.. .+.....++..+.+.|+|||+++-.
T Consensus 266 -~~-~D~v~~~~~lh~~-~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 266 -PQ-GDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp -CC-EEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CC-CCEEEEecccccC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 33 9999985332211 1112225666777899999988643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=85.40 Aligned_cols=113 Identities=11% Similarity=-0.037 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
+...+.+.....++..||||||| |.++...|+.. ..+|+++|. ++.+.+.+++.++.+|++ ++|+++.+..+++.
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~--s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~ 99 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDM--SSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYV 99 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeC--CHHHHHHHHHHHHhcCCC-cceEEEECChHhCC
Confidence 34444555555577899999999 88887777763 258999999 776667788888889997 79999999777654
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. .+..|+|++-.... . ++ ... -.-..+.+.|||||.++
T Consensus 100 ~----~~~fD~V~~~~~~~---~-~~-~~~---~~l~~~~r~LkpgG~l~ 137 (256)
T 1nkv_A 100 A----NEKCDVAACVGATW---I-AG-GFA---GAEELLAQSLKPGGIML 137 (256)
T ss_dssp C----SSCEEEEEEESCGG---G-TS-SSH---HHHHHHTTSEEEEEEEE
T ss_pred c----CCCCCEEEECCChH---h-cC-CHH---HHHHHHHHHcCCCeEEE
Confidence 2 46799999853111 1 11 111 11122345799999665
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=87.86 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc---
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV--- 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v--- 480 (694)
++..|||+||| |.+++.+|+. ...+|+++|. ++.+.++|+++++.||++ ++|++++++..+. + +++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDi--s~~al~~A~~n~~~~~l~-~~v~~~~~D~~~~----~-~~~f~~~ 193 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDV--SSKAVEIARKNAERHGVS-DRFFVRKGEFLEP----F-KEKFASI 193 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEES--CHHHHHHHHHHHHHTTCT-TSEEEEESSTTGG----G-GGGTTTC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CceEEEECcchhh----c-ccccCCC
Confidence 45689999999 9888888887 3679999999 788888999999999997 7899999976642 1 2467
Q ss_pred cEEEccc
Q 044245 481 DLLIGEP 487 (694)
Q Consensus 481 DvivsE~ 487 (694)
|+|||-|
T Consensus 194 D~IvsnP 200 (284)
T 1nv8_A 194 EMILSNP 200 (284)
T ss_dssp CEEEECC
T ss_pred CEEEEcC
Confidence 9999984
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=90.94 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=71.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..++++.+ ..+++++|. +.|++.|++ .+ +|+++.+|..+ +.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~~-- 244 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP----------KLKCIVFDR-PQVVENLSG------SN-NLTYVGGDMFT-SI-- 244 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HHHHTTCCC------BT-TEEEEECCTTT-CC--
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC----------CCeEEEeeC-HHHHhhccc------CC-CcEEEeccccC-CC--
Confidence 34568999999999999999999864 368999999 999888764 22 59999999865 32
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCC---CCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE---NPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p---~G~iiP 186 (694)
+ .||+|++..+-+.. .+.....++..+.+.|+| ||+++-
T Consensus 245 --p-~~D~v~~~~~lh~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i 286 (352)
T 1fp2_A 245 --P-NADAVLLKYILHNW-TDKDCLRILKKCKEAVTNDGKRGKVTI 286 (352)
T ss_dssp --C-CCSEEEEESCGGGS-CHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred --C-CccEEEeehhhccC-CHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 2 39999985332222 111222566677789999 998764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.8e-06 Score=86.61 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=63.0
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
+.....++..||||||| |.++..+|+..| .+|++++. ++.+.+.+++.++.+|++ ++|+++.++.+++ .
T Consensus 66 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------~ 135 (302)
T 3hem_A 66 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTL--SENQYAHDKAMFDEVDSP-RRKEVRIQGWEEF------D 135 (302)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEEC--CHHHHHHHHHHHHHSCCS-SCEEEEECCGGGC------C
T ss_pred HHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEECCHHHc------C
Confidence 33334567899999999 988888888722 58999999 777677888889999997 8999999977655 3
Q ss_pred ccccEEEccc
Q 044245 478 KKVDLLIGEP 487 (694)
Q Consensus 478 ~~vDvivsE~ 487 (694)
++.|+|++-.
T Consensus 136 ~~fD~v~~~~ 145 (302)
T 3hem_A 136 EPVDRIVSLG 145 (302)
T ss_dssp CCCSEEEEES
T ss_pred CCccEEEEcc
Confidence 7899999864
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-06 Score=86.37 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=71.3
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCC--ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKT--AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a--~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
.++..||||||| |.+++..|+..+. .+|++++. ++.+.+.|++.++..+.. ++|++++++.+++. .++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~--s~~ml~~A~~~~~~~~~~-~~v~~~~~D~~~~~-----~~~~ 140 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN--SPAMIERCRRHIDAYKAP-TPVDVIEGDIRDIA-----IENA 140 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEES--CHHHHHHHHHHHHTSCCS-SCEEEEESCTTTCC-----CCSE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEEC--CHHHHHHHHHHHHhhccC-ceEEEeeccccccc-----cccc
Confidence 367899999999 9888877775322 38999999 676667788888888887 89999999776554 3568
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++-. .+ ..++..... -.-.++.+.|||||.++
T Consensus 141 d~v~~~~--~l--~~~~~~~~~--~~l~~i~~~LkpGG~li 175 (261)
T 4gek_A 141 SMVVLNF--TL--QFLEPSERQ--ALLDKIYQGLNPGGALV 175 (261)
T ss_dssp EEEEEES--CG--GGSCHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred ccceeee--ee--eecCchhHh--HHHHHHHHHcCCCcEEE
Confidence 9998842 21 233322210 11122335799999765
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.9e-06 Score=84.93 Aligned_cols=106 Identities=18% Similarity=0.059 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
.|.......+++.|||+||| |.++..+|+. |...+|+++|. ++.+.+.|++.++.+|+. ++|+++.++..+.
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--- 157 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEI--REDFAKLAWENIKWAGFD-DRVTIKLKDIYEG--- 157 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECS--CHHHHHHHHHHHHHHTCT-TTEEEECSCGGGC---
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEec--CHHHHHHHHHHHHHcCCC-CceEEEECchhhc---
Confidence 34445555578899999999 8888888887 54689999999 777777888899999997 8899999876643
Q ss_pred ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 474 DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 474 ~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+++|+|++.+- -+|..+. .+ .+.|+|||.++
T Consensus 158 -~~~~~~D~v~~~~~-------~~~~~l~--~~----~~~L~~gG~l~ 191 (255)
T 3mb5_A 158 -IEEENVDHVILDLP-------QPERVVE--HA----AKALKPGGFFV 191 (255)
T ss_dssp -CCCCSEEEEEECSS-------CGGGGHH--HH----HHHEEEEEEEE
T ss_pred -cCCCCcCEEEECCC-------CHHHHHH--HH----HHHcCCCCEEE
Confidence 33467999998641 1223331 11 23589998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=86.86 Aligned_cols=101 Identities=8% Similarity=0.058 Sum_probs=71.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.+++..|+.....+|+++|. ++.+.+.+++.++.+|++ +|++++++.+++.......+++|+|
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDS--LNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC--CEEEEeccHHHhcccccccCCccEE
Confidence 56789999999 999988886433568999999 777777889899999985 4999999877664310013679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-.+ -+... +. ....++|+|||.++
T Consensus 146 ~~~~~-------~~~~~----~l-~~~~~~LkpgG~l~ 171 (240)
T 1xdz_A 146 TARAV-------ARLSV----LS-ELCLPLVKKNGLFV 171 (240)
T ss_dssp EEECC-------SCHHH----HH-HHHGGGEEEEEEEE
T ss_pred EEecc-------CCHHH----HH-HHHHHhcCCCCEEE
Confidence 98642 11111 11 12234799999874
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=88.27 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=75.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++.+|+.| .+|+++|. ++.+.+.+++.++.+|++ ++|+++.++.+++. +.+++|+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~----~~~~~D~v 148 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDI--DPVKIALARNNAEVYGIA-DKIEFICGDFLLLA----SFLKADVV 148 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHG----GGCCCSEE
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEEC--CHHHHHHHHHHHHHcCCC-cCeEEEECChHHhc----ccCCCCEE
Confidence 67899999999 99999999985 79999999 777778889999999997 78999999877664 24689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-+-|... .... ..+ ..+.++|+|||.++
T Consensus 149 ~~~~~~~~~-~~~~-~~~------~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 149 FLSPPWGGP-DYAT-AET------FDIRTMMSPDGFEI 178 (241)
T ss_dssp EECCCCSSG-GGGG-SSS------BCTTTSCSSCHHHH
T ss_pred EECCCcCCc-chhh-hHH------HHHHhhcCCcceeH
Confidence 998643321 1111 011 12345799999654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-06 Score=84.96 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=72.2
Q ss_pred HHHHHHHHHhc---CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 392 SMVMAMRNALQ---GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~---~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
...+||.+.+. ..+|..|||+||| |..+..+|+. |...+|||+|- ++.+.+.+++.++.. .+|+.|.+.
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~--s~~~~~~l~~~a~~~----~ni~~V~~d 134 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEF--APRVMRDLLTVVRDR----RNIFPILGD 134 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEEC--CHHHHHHHHHHSTTC----TTEEEEESC
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeC--CHHHHHHHHHhhHhh----cCeeEEEEe
Confidence 34466765443 4578999999999 8777777775 54679999999 665544555544432 357777776
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+.+......+.+|+|++... .+|+.-. ..++ ..++|||||+++
T Consensus 135 ~~~p~~~~~~~~~vDvVf~d~~-------~~~~~~~--~l~~-~~r~LKpGG~lv 179 (233)
T 4df3_A 135 ARFPEKYRHLVEGVDGLYADVA-------QPEQAAI--VVRN-ARFFLRDGGYML 179 (233)
T ss_dssp TTCGGGGTTTCCCEEEEEECCC-------CTTHHHH--HHHH-HHHHEEEEEEEE
T ss_pred ccCccccccccceEEEEEEecc-------CChhHHH--HHHH-HHHhccCCCEEE
Confidence 6554433233578999987752 3333221 1222 234799999764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-06 Score=93.33 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=67.0
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCccccc-EEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR-VEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~-i~vi~~~~~~~~~~~l~~~~vD 481 (694)
++..|||+++| |.+|+.||+. +||++|+++|. ++.+.++++++++.||++ ++ ++++.+++.++-...+ .++.|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi--~~~av~~~~~N~~~Ngl~-~~~v~v~~~Da~~~l~~~~-~~~fD 127 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDI--SSKAIEIMKENFKLNNIP-EDRYEIHGMEANFFLRKEW-GFGFD 127 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECS--CHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHHHSCC-SSCEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC-CceEEEEeCCHHHHHHHhh-CCCCc
Confidence 56789999999 9999999985 35899999999 888889999999999997 77 9999998765532012 36799
Q ss_pred EEEcccc
Q 044245 482 LLIGEPY 488 (694)
Q Consensus 482 vivsE~~ 488 (694)
+|+..||
T Consensus 128 ~V~lDP~ 134 (392)
T 3axs_A 128 YVDLDPF 134 (392)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999994
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.9e-06 Score=84.34 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.+.+.....++..||||||| |.++..+|+.. ..+|++++. ++.+.+.+++.++.+|+. ++|+++.+..+++..
T Consensus 50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISI--SRPQVNQANARATAAGLA-NRVTFSYADAMDLPF 125 (273)
T ss_dssp HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeC--CHHHHHHHHHHHHhcCCC-cceEEEECccccCCC
Confidence 3444455544567899999999 98888888764 369999999 676667788888888997 899999997766542
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.++.|+|++-..+. .+ + ..-. +. ..+.+.|+|||.++
T Consensus 126 ---~~~~fD~v~~~~~l~---~~-~-~~~~--~l-~~~~~~L~pgG~l~ 163 (273)
T 3bus_A 126 ---EDASFDAVWALESLH---HM-P-DRGR--AL-REMARVLRPGGTVA 163 (273)
T ss_dssp ---CTTCEEEEEEESCTT---TS-S-CHHH--HH-HHHHTTEEEEEEEE
T ss_pred ---CCCCccEEEEechhh---hC-C-CHHH--HH-HHHHHHcCCCeEEE
Confidence 346899999864222 11 1 1111 11 22345799999765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-06 Score=88.83 Aligned_cols=103 Identities=12% Similarity=-0.091 Sum_probs=74.0
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..++..|||+||| |.++..+|+.. ..+|+++|. ++.+.+.+++.++.+|+. ++|+++.++.+++. ++.++.|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~---~~~~~fD 187 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTL--SAAQADFGNRRARELRID-DHVRSRVCNMLDTP---FDKGAVT 187 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCC---CCTTCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeC--CHHHHHHHHHHHHHcCCC-CceEEEECChhcCC---CCCCCEe
Confidence 3457899999999 98888888862 258999999 777777888889999997 89999999877654 3357899
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++-..+.. + ++..+ -....+.|||||.++
T Consensus 188 ~V~~~~~l~~---~-~~~~~-----l~~~~~~LkpgG~l~ 218 (312)
T 3vc1_A 188 ASWNNESTMY---V-DLHDL-----FSEHSRFLKVGGRYV 218 (312)
T ss_dssp EEEEESCGGG---S-CHHHH-----HHHHHHHEEEEEEEE
T ss_pred EEEECCchhh---C-CHHHH-----HHHHHHHcCCCcEEE
Confidence 9998532111 1 21111 122234799999876
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-06 Score=84.91 Aligned_cols=102 Identities=17% Similarity=0.051 Sum_probs=71.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC-Ccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ-QKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~-~~~vD 481 (694)
+++.||||||| |..++..|++-+ ..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+.-. .+. .++.|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~l~-~~~~~~~fD 138 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEA--DAHHAQVARENLQLAGVD-QRVTLREGPALQSLE-SLGECPAFD 138 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEEC--CHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-TCCSCCCCS
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-hcCCCCCeE
Confidence 56799999999 988888888622 479999999 776677889999999997 899999998765322 121 24899
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++..- .+ .... +.+. ..++|+|||.++
T Consensus 139 ~V~~d~~-------~~-~~~~--~l~~-~~~~LkpGG~lv 167 (248)
T 3tfw_A 139 LIFIDAD-------KP-NNPH--YLRW-ALRYSRPGTLII 167 (248)
T ss_dssp EEEECSC-------GG-GHHH--HHHH-HHHTCCTTCEEE
T ss_pred EEEECCc-------hH-HHHH--HHHH-HHHhcCCCeEEE
Confidence 9997541 11 1111 1111 224799999665
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=89.11 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=65.2
Q ss_pred ccCCCEEEEEcCCC------CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE-Eeccc
Q 044245 64 VTKSCHVLDIGAGT------GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV-INKRS 136 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt------G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v-i~~~~ 136 (694)
+.++.+|||+|||+ |. ..+++..+ +..+|+|+|+++. + .++++ +++|+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~---------~~~~V~gvDis~~-------------v-~~v~~~i~gD~ 115 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP---------TGTLLVDSDLNDF-------------V-SDADSTLIGDC 115 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSC---------TTCEEEEEESSCC-------------B-CSSSEEEESCG
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC---------CCCEEEEEECCCC-------------C-CCCEEEEECcc
Confidence 56789999999955 55 44454432 1369999999987 1 26788 99999
Q ss_pred cccccccCCCCCccEEEEccccccc----c----CCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVGVDIDSRADILVSEILDSEL----L----GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l----~----~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++.. +++||+|+|++..... . .....+.++....++|+|||+++-
T Consensus 116 ~~~~~----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 116 ATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp GGCCC----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCc----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 88653 2689999997532210 1 122345666777789999999874
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=86.19 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.||||||| |.+++..|+++...+|+++|. ++.+.+.+++.++.+|++ ++|+++.+...+.....+ .++.|+|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~-~~~fD~V 146 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIER--NETMIQYAKQNLATYHFE-NQVRIIEGNALEQFENVN-DKVYDMI 146 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEEC--CHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCHHHHT-TSCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHHhhc-cCCccEE
Confidence 56799999999 999988888643579999999 777777889999999997 899999998765421012 4689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+...... .... +. ....++|+|||.++
T Consensus 147 ~~~~~~~--------~~~~--~l-~~~~~~LkpgG~lv 173 (232)
T 3ntv_A 147 FIDAAKA--------QSKK--FF-EIYTPLLKHQGLVI 173 (232)
T ss_dssp EEETTSS--------SHHH--HH-HHHGGGEEEEEEEE
T ss_pred EEcCcHH--------HHHH--HH-HHHHHhcCCCeEEE
Confidence 9764111 1111 11 12235799999764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=88.14 Aligned_cols=78 Identities=6% Similarity=0.052 Sum_probs=63.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc-cEEEeeccccccccccc-CCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID-RVEILQKGKKCLTMDDT-QQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~-~i~vi~~~~~~~~~~~l-~~~~vD 481 (694)
+++.|||+||| |.+++.+|+.| + +|+++|. ++.+.+.+++.++.||++ + +++++.+++.++..... ..++.|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g-a-~V~~VD~--s~~al~~a~~n~~~~gl~-~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG-A-EVTHVDA--SKKAIGWAKENQVLAGLE-QAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT-C-EEEEECS--CHHHHHHHHHHHHHHTCT-TSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCcEEEcccccCHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHHcCCC-ccceEEEECcHHHHHHHHHhcCCCce
Confidence 46789999999 99999999986 7 9999999 788888899999999997 6 59999998765432100 135799
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+||+.|
T Consensus 228 ~Ii~dP 233 (332)
T 2igt_A 228 IILTDP 233 (332)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999985
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=80.53 Aligned_cols=87 Identities=8% Similarity=0.013 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
.+.++.+.....++..|||+||| |.+++.+++.+ .+|+++|. ++.+.+.+++.++.+++. ++++++.+..++ .
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~--~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDR--NPEAISTTEMNLQRHGLG-DNVTLMEGDAPE-A 94 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEES--CHHHHHHHHHHHHHTTCC-TTEEEEESCHHH-H
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEEC--CHHHHHHHHHHHHHcCCC-cceEEEecCHHH-h
Confidence 34455555555678899999999 99999999985 79999999 777777888888889986 789999886554 1
Q ss_pred ccccCCccccEEEccc
Q 044245 472 MDDTQQKKVDLLIGEP 487 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~ 487 (694)
..++ .++|+|++-.
T Consensus 95 ~~~~--~~~D~v~~~~ 108 (192)
T 1l3i_A 95 LCKI--PDIDIAVVGG 108 (192)
T ss_dssp HTTS--CCEEEEEESC
T ss_pred cccC--CCCCEEEECC
Confidence 1111 4799999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5e-06 Score=83.22 Aligned_cols=118 Identities=12% Similarity=0.022 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
+.+.+.+... .++..||||||| |.++..+++.+ ..+|+++|. ++.+.+.|++..+.++ .+++++.+..+++.
T Consensus 49 ~~~~l~~~~~-~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~--s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 49 YMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIEC--NDGVFQRLRDWAPRQT---HKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEEC--CHHHHHHHHHHGGGCS---SEEEEEESCHHHHG
T ss_pred HHHHHHhhcC-CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcC--CHHHHHHHHHHHHhcC---CCeEEEecCHHHhh
Confidence 4444444432 356789999999 98888888875 679999999 7766677787777666 46999999877762
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. .++.++.|+|++..|-+ ............ +. ..+.+.|||||.++
T Consensus 122 ~-~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~-~l-~~~~r~LkpgG~l~ 167 (236)
T 1zx0_A 122 P-TLPDGHFDGILYDTYPL-SEETWHTHQFNF-IK-NHAFRLLKPGGVLT 167 (236)
T ss_dssp G-GSCTTCEEEEEECCCCC-BGGGTTTHHHHH-HH-HTHHHHEEEEEEEE
T ss_pred c-ccCCCceEEEEECCccc-chhhhhhhhHHH-HH-HHHHHhcCCCeEEE
Confidence 1 23357899999953322 111111111111 11 22345799999754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-06 Score=80.22 Aligned_cols=82 Identities=7% Similarity=0.033 Sum_probs=63.3
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc-cEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID-RVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~-~i~vi~~~~~~~~~~~ 474 (694)
+.+.....++..|||+||| |.++..+++. ..+|+++|. ++.+.+.+++.++.++++ + +++++.+...+.
T Consensus 44 l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~---- 114 (194)
T 1dus_A 44 LVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADI--NRRAIKLAKENIKLNNLD-NYDIRVVHSDLYEN---- 114 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEES--CHHHHHHHHHHHHHTTCT-TSCEEEEECSTTTT----
T ss_pred HHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEEC--CHHHHHHHHHHHHHcCCC-ccceEEEECchhcc----
Confidence 3334444467899999999 9999888887 369999999 777777888888888986 4 699999876542
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
+..++.|+|++-+
T Consensus 115 ~~~~~~D~v~~~~ 127 (194)
T 1dus_A 115 VKDRKYNKIITNP 127 (194)
T ss_dssp CTTSCEEEEEECC
T ss_pred cccCCceEEEECC
Confidence 2246899999975
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=86.40 Aligned_cols=95 Identities=3% Similarity=-0.115 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHh-----ccCCcc---cccEEE
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVA-----DPNCFS---IDRVEI 462 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~-----~~N~l~---~~~i~v 462 (694)
...+.+.+.....+++.||||||| |.+++.+|+.| +++|++++.+ ++.+.+.+++.+ +.||+. .++|++
T Consensus 66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s-~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYP-DPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECS-CHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCC-CHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 344455555544577899999999 99999999996 8899999982 245556788888 455552 026777
Q ss_pred eeccccccccccc----CCccccEEEc-cccc
Q 044245 463 LQKGKKCLTMDDT----QQKKVDLLIG-EPYY 489 (694)
Q Consensus 463 i~~~~~~~~~~~l----~~~~vDvivs-E~~~ 489 (694)
+.....+... ++ ..++.|+||+ ..+|
T Consensus 144 ~~~~~~~~~~-~~~~~~~~~~fD~Ii~~dvl~ 174 (281)
T 3bzb_A 144 VPYRWGDSPD-SLQRCTGLQRFQVVLLADLLS 174 (281)
T ss_dssp EECCTTSCTH-HHHHHHSCSSBSEEEEESCCS
T ss_pred EEecCCCccH-HHHhhccCCCCCEEEEeCccc
Confidence 7433222110 11 2467999987 5543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.3e-06 Score=84.19 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=66.8
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
.|.+.....++..|||+||| |.+++.+|+. |...+|+++|. ++.+.+.+++.++.+++. ++++++.++..+.
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--- 176 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEK--REEFAKLAESNLTKWGLI-ERVTIKVRDISEG--- 176 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECC--CHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC---
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHHHHHHHcCCC-CCEEEEECCHHHc---
Confidence 34444455577899999999 9998888887 54579999999 777777888888889987 7899999876554
Q ss_pred ccCCccccEEEccc
Q 044245 474 DTQQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l~~~~vDvivsE~ 487 (694)
++.+++|+|++.+
T Consensus 177 -~~~~~~D~V~~~~ 189 (277)
T 1o54_A 177 -FDEKDVDALFLDV 189 (277)
T ss_dssp -CSCCSEEEEEECC
T ss_pred -ccCCccCEEEECC
Confidence 3346799999864
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.5e-06 Score=89.12 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc--cEEEeeccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID--RVEILQKGKKCLTMD 473 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~--~i~vi~~~~~~~~~~ 473 (694)
+.+.....++..|||+||| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.||++ + +++++.++..+
T Consensus 214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~--s~~al~~Ar~n~~~ngl~-~~~~v~~~~~D~~~---- 286 (375)
T 4dcm_A 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDE--SPMAVASSRLNVETNMPE-ALDRCEFMINNALS---- 286 (375)
T ss_dssp HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHCGG-GGGGEEEEECSTTT----
T ss_pred HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEEC--cHHHHHHHHHHHHHcCCC-cCceEEEEechhhc----
Confidence 3444444455789999999 999999999854579999999 788888899999999986 5 57778886554
Q ss_pred ccCCccccEEEcccc
Q 044245 474 DTQQKKVDLLIGEPY 488 (694)
Q Consensus 474 ~l~~~~vDvivsE~~ 488 (694)
.++.+++|+|++-|-
T Consensus 287 ~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPP 301 (375)
T ss_dssp TCCTTCEEEEEECCC
T ss_pred cCCCCCeeEEEECCC
Confidence 234578999999853
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.3e-06 Score=86.49 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=70.6
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHH--HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEE
Q 044245 385 GDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVA--RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA--~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~ 461 (694)
....|...|++.+.... .++..||||||| |.+++..| +.. ..+|+++|. ++.+.+.+++.++.+|+. ++|+
T Consensus 100 ~~~~~~~~~~~~l~~~l--~~~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~ 173 (305)
T 3ocj_A 100 ATRERHGHFRRALQRHL--RPGCVVASVPCGWMSELLALDYSACP-GVQLVGIDY--DPEALDGATRLAAGHALA-GQIT 173 (305)
T ss_dssp HHHHHHHHHHHHHHHHC--CTTCEEEETTCTTCHHHHTSCCTTCT-TCEEEEEES--CHHHHHHHHHHHTTSTTG-GGEE
T ss_pred cchHHHHHHHHHHHhhC--CCCCEEEEecCCCCHHHHHHHHhcCC-CCeEEEEEC--CHHHHHHHHHHHHhcCCC-CceE
Confidence 33455555777775544 367899999999 87776654 333 569999999 777777889999999998 8999
Q ss_pred EeecccccccccccCCccccEEEccc
Q 044245 462 ILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
++.++.+++.. + +++|+|++-.
T Consensus 174 ~~~~d~~~~~~---~-~~fD~v~~~~ 195 (305)
T 3ocj_A 174 LHRQDAWKLDT---R-EGYDLLTSNG 195 (305)
T ss_dssp EEECCGGGCCC---C-SCEEEEECCS
T ss_pred EEECchhcCCc---c-CCeEEEEECC
Confidence 99998776542 2 7899999964
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-06 Score=83.75 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=91.9
Q ss_pred HHHHHHHhh----ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-cC--C-C
Q 044245 55 AYRLAIDKM----VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-NG--M-G 126 (694)
Q Consensus 55 ~y~~ai~~~----~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-ng--l-~ 126 (694)
.|.+.+... ....++||-||.|.|..+..+.+... ..+|+.||+++.+++.|++.... ++ + .
T Consensus 68 ~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~----------v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~d 137 (294)
T 3o4f_A 68 IYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKN----------VESITMVEIDAGVVSFCRQYLPNHNAGSYDD 137 (294)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTT----------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCC----------cceEEEEcCCHHHHHHHHhcCccccccccCC
Confidence 455555431 23468999999999999999888743 36899999999999999998643 22 2 3
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
.|++++.+|....-. ...++||+|+.+..+.....+.. -..+...+++.|+|||+++-+....+
T Consensus 138 pRv~v~~~Dg~~~l~--~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~ 202 (294)
T 3o4f_A 138 PRFKLVIDDGVNFVN--QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCF 202 (294)
T ss_dssp TTEEEEESCTTTTTS--CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred CcEEEEechHHHHHh--hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 589999999887642 33478999999877654333332 23466677889999999986655443
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.7e-06 Score=83.43 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=72.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++..+++.| .+|+++|. ++.+.+.+++.++.+|+. ++|+++.+..+++.. ...+++|+|
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~~fD~v 140 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERG--HQVILCDL--SAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVAS--HLETPVDLI 140 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTGG--GCSSCEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhhh--hcCCCceEE
Confidence 35689999999 99998888885 48999999 776677888888899997 799999998776642 235789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..+.. ++ +.-. +. ..+.+.|+|||.++
T Consensus 141 ~~~~~l~~----~~-~~~~--~l-~~~~~~LkpgG~l~ 170 (285)
T 4htf_A 141 LFHAVLEW----VA-DPRS--VL-QTLWSVLRPGGVLS 170 (285)
T ss_dssp EEESCGGG----CS-CHHH--HH-HHHHHTEEEEEEEE
T ss_pred EECchhhc----cc-CHHH--HH-HHHHHHcCCCeEEE
Confidence 99642221 12 1111 11 12234799999764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-06 Score=81.23 Aligned_cols=82 Identities=16% Similarity=-0.020 Sum_probs=63.6
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.....++..|||+||| |.++...|+.+ .+|+++|. ++.+.+.+++.++.+|+. +++++.++..+...
T Consensus 69 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~--~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~--- 139 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTGSGYQTAILAHLV--QHVCSVER--IKGLQWQARRRLKNLDLH--NVSTRHGDGWQGWQ--- 139 (210)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCG---
T ss_pred HHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEec--CHHHHHHHHHHHHHcCCC--ceEEEECCcccCCc---
Confidence 3344444567899999999 99998888884 79999999 777777888888888984 69999987654322
Q ss_pred CCccccEEEccc
Q 044245 476 QQKKVDLLIGEP 487 (694)
Q Consensus 476 ~~~~vDvivsE~ 487 (694)
..++.|+|++-.
T Consensus 140 ~~~~~D~i~~~~ 151 (210)
T 3lbf_A 140 ARAPFDAIIVTA 151 (210)
T ss_dssp GGCCEEEEEESS
T ss_pred cCCCccEEEEcc
Confidence 246799999874
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=81.18 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=61.5
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChh------HHHHHHHHhccCCcccccEEEeecc-
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDK------GAQYLRTVADPNCFSIDRVEILQKG- 466 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~------~~~~~~~i~~~N~l~~~~i~vi~~~- 466 (694)
.|.+.....+++.||||||| |.++..+|+.+|. .+|++++. ++. +.+.+++.++.+++. ++|+++.++
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~--s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~ 110 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDI--ASPDYGAPLTLGQAWNHLLAGPLG-DRLTVHFNTN 110 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECS--SCTTCCSSSCHHHHHHHHHTSTTG-GGEEEECSCC
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEC--CccccccHHHHHHHHHHHHhcCCC-CceEEEECCh
Confidence 34444444578899999999 8888888876324 79999999 442 345677888888987 799999886
Q ss_pred cccccccccCCccccEEEccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~ 487 (694)
...... .++.++.|+|++-.
T Consensus 111 ~~~~~~-~~~~~~fD~v~~~~ 130 (275)
T 3bkx_A 111 LSDDLG-PIADQHFDRVVLAH 130 (275)
T ss_dssp TTTCCG-GGTTCCCSEEEEES
T ss_pred hhhccC-CCCCCCEEEEEEcc
Confidence 111111 12346899999854
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=82.26 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=71.8
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHH-HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVA-RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA-~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
.+.....++..||||||| |.++..+| +.| + +|++++. ++.+.+.+++.++.+|+. ++|+++.+..+++
T Consensus 57 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~gvd~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~----- 126 (287)
T 1kpg_A 57 LGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-V-NVVGLTL--SKNQANHVQQLVANSENL-RSKRVLLAGWEQF----- 126 (287)
T ss_dssp HTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-C-EEEEEES--CHHHHHHHHHHHHTCCCC-SCEEEEESCGGGC-----
T ss_pred HHHcCCCCcCEEEEECCcccHHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEECChhhC-----
Confidence 333334467899999999 88877777 555 5 9999999 676667788888888887 7999999865533
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+ ++.|+|++-..+. . ++..... -.-..+.+.|||||.++
T Consensus 127 ~-~~fD~v~~~~~l~---~-~~~~~~~--~~l~~~~~~LkpgG~l~ 165 (287)
T 1kpg_A 127 D-EPVDRIVSIGAFE---H-FGHERYD--AFFSLAHRLLPADGVML 165 (287)
T ss_dssp C-CCCSEEEEESCGG---G-TCTTTHH--HHHHHHHHHSCTTCEEE
T ss_pred C-CCeeEEEEeCchh---h-cChHHHH--HHHHHHHHhcCCCCEEE
Confidence 2 6799999853221 1 1101111 11122234799999776
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-06 Score=81.57 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.+-+.+.+.....++..||||||| |..++..|++ +...+|+++|. ++.+.+.+++.++.+|++.++|+++.++..+
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDP--ESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECS--CHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 344444444432233489999999 9988888875 22469999999 7777778899999999842589999998765
Q ss_pred ccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
+-. .+..++.|+|+...-.. .... +.+. ..++|+|||.++=
T Consensus 121 ~l~-~~~~~~fD~V~~d~~~~--------~~~~--~l~~-~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 121 VMS-RLANDSYQLVFGQVSPM--------DLKA--LVDA-AWPLLRRGGALVL 161 (221)
T ss_dssp HGG-GSCTTCEEEEEECCCTT--------THHH--HHHH-HHHHEEEEEEEEE
T ss_pred HHH-HhcCCCcCeEEEcCcHH--------HHHH--HHHH-HHHHcCCCcEEEE
Confidence 532 23247899998864111 1111 1111 1246999997664
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=88.47 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEeccccccccccC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSDELEVGVD 144 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~~ 144 (694)
++.+|||.+||||.+.+.+++..... +..+++|+|+++.++..|+.++..+|+. +++.+.++|......+..
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~-------~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~ 293 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQP-------QTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQ 293 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCT-------TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhc-------cCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccc
Confidence 46799999999999988888874210 1368999999999999999999999985 478999999765421112
Q ss_pred CCCCccEEEEccccc
Q 044245 145 IDSRADILVSEILDS 159 (694)
Q Consensus 145 l~~~~DlIvse~~~~ 159 (694)
...+||+||+||...
T Consensus 294 ~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 294 EPTNFDGVLMNPPYS 308 (542)
T ss_dssp SCCCBSEEEECCCTT
T ss_pred ccccccEEEecCCcC
Confidence 236899999998654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-06 Score=90.04 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc-ccccEEEeeccccccccccc--CCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF-SIDRVEILQKGKKCLTMDDT--QQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l-~~~~i~vi~~~~~~~~~~~l--~~~~v 480 (694)
+++.|||+||| |.+++.+|+.| +++|+++|. ++.+.+.|++.++.||+ + ++++++.+++.++.. .+ ..++.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~--s~~al~~a~~n~~~ngl~~-~~v~~~~~D~~~~~~-~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDT--SQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLR-TYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHTTCCG-GGEEEEESCHHHHHH-HHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEEC--CHHHHHHHHHHHHHcCCCc-cceEEEECCHHHHHH-HHHhcCCCC
Confidence 67899999999 99999999986 899999999 78888889999999999 7 689999998766532 11 13579
Q ss_pred cEEEccc-cc
Q 044245 481 DLLIGEP-YY 489 (694)
Q Consensus 481 DvivsE~-~~ 489 (694)
|+||+.| ++
T Consensus 295 D~Ii~dpP~~ 304 (396)
T 3c0k_A 295 DVIVMDPPKF 304 (396)
T ss_dssp EEEEECCSST
T ss_pred CEEEECCCCC
Confidence 9999984 44
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.10 E-value=5.7e-06 Score=80.72 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=70.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.++..+|+..+..+|+++|. ++.+.+.+++.++.++++ + |+++.++.+++. +.++.|+|
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~-~-v~~~~~d~~~~~----~~~~~D~i 136 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDS--LGKRVRFLRQVQHELKLE-N-IEPVQSRVEEFP----SEPPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHTTCS-S-EEEEECCTTTSC----CCSCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC-C-eEEEecchhhCC----ccCCcCEE
Confidence 46799999999 888887777633579999999 777777888889899986 4 999998776543 23679999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
++-.+ -++.. .. ....++|+|||.++=.
T Consensus 137 ~~~~~-------~~~~~----~l-~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 137 ISRAF-------ASLND----MV-SWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ECSCS-------SSHHH----HH-HHHTTSEEEEEEEEEE
T ss_pred EEecc-------CCHHH----HH-HHHHHhcCCCcEEEEE
Confidence 98531 11111 11 2224579999976543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-06 Score=88.71 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=70.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccC
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVD 144 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~ 144 (694)
.++.+|||||||+|.++..++++.+ ..+++++|. +.+++.|++ .+ +|+++.+|+.+ +.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p----------~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~~--- 249 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFP----------HLKCTVFDQ-PQVVGNLTG------NE-NLNFVGGDMFK-SI--- 249 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCT----------TSEEEEEEC-HHHHSSCCC------CS-SEEEEECCTTT-CC---
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCC----------CCeEEEecc-HHHHhhccc------CC-CcEEEeCccCC-CC---
Confidence 4568999999999999999999875 468999999 788877653 33 59999999876 32
Q ss_pred CCCCccEEEEccccccccCCChHHHHHHHHHhccCC---CCeEEc
Q 044245 145 IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE---NPLTVP 186 (694)
Q Consensus 145 l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p---~G~iiP 186 (694)
+ .+|+|++..+-+.. .+.....++..+.+.|+| ||+++-
T Consensus 250 -~-~~D~v~~~~vlh~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i 291 (358)
T 1zg3_A 250 -P-SADAVLLKWVLHDW-NDEQSLKILKNSKEAISHKGKDGKVII 291 (358)
T ss_dssp -C-CCSEEEEESCGGGS-CHHHHHHHHHHHHHHTGGGGGGCEEEE
T ss_pred -C-CceEEEEcccccCC-CHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 2 49999985333221 111223566667789999 998764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.6e-06 Score=83.53 Aligned_cols=100 Identities=7% Similarity=0.046 Sum_probs=70.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++..+|+.| + +|+++|. ++.+.+.+++.++.||+ +++++.++.+++.. .++.|+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g-~-~v~~vD~--s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~----~~~fD~i 188 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLG-Y-DVTSWDH--NENSIAFLNETKEKENL---NISTALYDINAANI----QENYDFI 188 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHHHHTTC---CEEEEECCGGGCCC----CSCEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCC-C-eEEEEEC--CHHHHHHHHHHHHHcCC---ceEEEEeccccccc----cCCccEE
Confidence 67789999999 99999999986 5 8999999 77777788888888876 58999887665443 4789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..+. .++...+.- +. ..+.+.|+|||.++
T Consensus 189 ~~~~~~~----~~~~~~~~~-~l-~~~~~~LkpgG~l~ 220 (286)
T 3m70_A 189 VSTVVFM----FLNRERVPS-II-KNMKEHTNVGGYNL 220 (286)
T ss_dssp EECSSGG----GSCGGGHHH-HH-HHHHHTEEEEEEEE
T ss_pred EEccchh----hCCHHHHHH-HH-HHHHHhcCCCcEEE
Confidence 9975322 122122210 11 12234699999743
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.7e-06 Score=83.17 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc-CCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT-QQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l-~~~~vDv 482 (694)
+++.|||+||| |.++..+|+..+..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+... .+ ..++.|+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~~~~fD~ 129 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIER--DERRYEEAHKHVKALGLE-SRIELLFGDALQLGE-KLELYPLFDV 129 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECC--CHHHHHHHHHHHHHTTCT-TTEEEECSCGGGSHH-HHTTSCCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHH-hcccCCCccE
Confidence 56789999999 888888887633479999999 777777888888899997 789999987665311 11 1367999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
|++..
T Consensus 130 I~~~~ 134 (233)
T 2gpy_A 130 LFIDA 134 (233)
T ss_dssp EEEEG
T ss_pred EEECC
Confidence 99864
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=83.75 Aligned_cols=104 Identities=9% Similarity=-0.021 Sum_probs=71.5
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....++..||||||| |.++..+|+. | + +|+++|. ++.+.+.+++.++.+|+. ++|+++.++.+++ ++
T Consensus 86 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~-~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------~~ 154 (318)
T 2fk8_A 86 LDLKPGMTLLDIGCGWGTTMRRAVERFD-V-NVIGLTL--SKNQHARCEQVLASIDTN-RSRQVLLQGWEDF------AE 154 (318)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHHC-C-EEEEEES--CHHHHHHHHHHHHTSCCS-SCEEEEESCGGGC------CC
T ss_pred cCCCCcCEEEEEcccchHHHHHHHHHCC-C-EEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEECChHHC------CC
Confidence 333467899999999 8888777776 5 4 9999999 776677888888888997 8899999876544 26
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.|+|++-..+. . ++..... -.-..+.+.|+|||.++
T Consensus 155 ~fD~v~~~~~l~---~-~~~~~~~--~~l~~~~~~LkpgG~l~ 191 (318)
T 2fk8_A 155 PVDRIVSIEAFE---H-FGHENYD--DFFKRCFNIMPADGRMT 191 (318)
T ss_dssp CCSEEEEESCGG---G-TCGGGHH--HHHHHHHHHSCTTCEEE
T ss_pred CcCEEEEeChHH---h-cCHHHHH--HHHHHHHHhcCCCcEEE
Confidence 799999853211 1 1111111 11112234799999765
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.08 E-value=7.6e-06 Score=80.51 Aligned_cols=110 Identities=10% Similarity=0.126 Sum_probs=74.4
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
+.+.....+++.|||+||| |.++..+++.+ ...+|+++|. ++.+.+.+++.++.++++ +|+++.+..+++.
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~--- 101 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDV--QEEMVNYAWEKVNKLGLK--NVEVLKSEENKIP--- 101 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEES--CHHHHHHHHHHHHHHTCT--TEEEEECBTTBCS---
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHHHHHHHcCCC--cEEEEecccccCC---
Confidence 4444444567899999999 88887777774 2469999999 676667788888888884 7999998776554
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+++|+|++-..+.. + + +... ..+ .+.+.|+|||.++
T Consensus 102 ~~~~~fD~v~~~~~l~~---~-~-~~~~--~l~-~~~~~LkpgG~l~ 140 (219)
T 3dh0_A 102 LPDNTVDFIFMAFTFHE---L-S-EPLK--FLE-ELKRVAKPFAYLA 140 (219)
T ss_dssp SCSSCEEEEEEESCGGG---C-S-SHHH--HHH-HHHHHEEEEEEEE
T ss_pred CCCCCeeEEEeehhhhh---c-C-CHHH--HHH-HHHHHhCCCeEEE
Confidence 33578999998642221 1 1 1111 111 1234699999765
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=9e-06 Score=79.58 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.+.+.....++ .|||+||| |.++...++.. ..+|+++|. ++.+.+.+++.++.+++. ++++++.+..+++.
T Consensus 35 ~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~--- 106 (219)
T 3dlc_A 35 NIINRFGITAG-TCIDIGSGPGALSIALAKQS-DFSIRALDF--SKHMNEIALKNIADANLN-DRIQIVQGDVHNIP--- 106 (219)
T ss_dssp HHHHHHCCCEE-EEEEETCTTSHHHHHHHHHS-EEEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEECBTTBCS---
T ss_pred HHHHhcCCCCC-EEEEECCCCCHHHHHHHHcC-CCeEEEEEC--CHHHHHHHHHHHHhcccc-CceEEEEcCHHHCC---
Confidence 33444433334 89999999 98888888873 469999999 676777888888889987 79999999877654
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
++.++.|+|++-.
T Consensus 107 ~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 107 IEDNYADLIVSRG 119 (219)
T ss_dssp SCTTCEEEEEEES
T ss_pred CCcccccEEEECc
Confidence 3357899999864
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-05 Score=87.08 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=77.7
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
...+.+.+.. ...++..|||+||| |.+++.+++.| + +|+++|. ++.+.+.+++.++.|++. ++++.++..
T Consensus 218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~-~V~gvDi--s~~al~~A~~n~~~~~~~---v~~~~~D~~ 290 (381)
T 3dmg_A 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-A-EVVGVED--DLASVLSLQKGLEANALK---AQALHSDVD 290 (381)
T ss_dssp HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-C-EEEEEES--BHHHHHHHHHHHHHTTCC---CEEEECSTT
T ss_pred HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHHcCCC---eEEEEcchh
Confidence 3444555443 22357789999999 99999999985 4 9999999 788888899999999984 788888766
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+... +.++.|+||+.|-|... .....+...- +.+. ..+.|+|||.++
T Consensus 291 ~~~~---~~~~fD~Ii~npp~~~~-~~~~~~~~~~-~l~~-~~~~LkpGG~l~ 337 (381)
T 3dmg_A 291 EALT---EEARFDIIVTNPPFHVG-GAVILDVAQA-FVNV-AAARLRPGGVFF 337 (381)
T ss_dssp TTSC---TTCCEEEEEECCCCCTT-CSSCCHHHHH-HHHH-HHHHEEEEEEEE
T ss_pred hccc---cCCCeEEEEECCchhhc-ccccHHHHHH-HHHH-HHHhcCcCcEEE
Confidence 5432 13689999998533310 1111121110 1111 234699998654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=6.4e-06 Score=86.49 Aligned_cols=85 Identities=7% Similarity=-0.068 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
.+.+.....++..||||||| |.++..+|+.++. .+|+++|. ++.+.+.+++.++.+|++ +|+++.++.++...
T Consensus 66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~g~~--~v~~~~~d~~~~~~- 140 (317)
T 1dl5_A 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY--SRKICEIAKRNVERLGIE--NVIFVCGDGYYGVP- 140 (317)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCG-
T ss_pred HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--CeEEEECChhhccc-
Confidence 33444445577899999999 9999988888642 57999999 676667888888899996 49999887655321
Q ss_pred ccCCccccEEEccc
Q 044245 474 DTQQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l~~~~vDvivsE~ 487 (694)
..++.|+|++-.
T Consensus 141 --~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 141 --EFSPYDVIFVTV 152 (317)
T ss_dssp --GGCCEEEEEECS
T ss_pred --cCCCeEEEEEcC
Confidence 136799999975
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-06 Score=87.25 Aligned_cols=97 Identities=13% Similarity=-0.055 Sum_probs=70.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc--cccEEE
Q 044245 386 DGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS--IDRVEI 462 (694)
Q Consensus 386 D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~--~~~i~v 462 (694)
...|++.|++.|.+.....+++.||||||| |.++...|+.| + +|++++. ++.+.+.+++.+..++.. ..++++
T Consensus 38 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~ 113 (293)
T 3thr_A 38 TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-F-SVTSVDA--SDKMLKYALKERWNRRKEPAFDKWVI 113 (293)
T ss_dssp CSCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHHHHTTTSHHHHTCEE
T ss_pred CcchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCC-C-eEEEEEC--CHHHHHHHHHhhhhcccccccceeeE
Confidence 456778899998888776677899999999 99999999986 5 9999999 666656666554322211 146888
Q ss_pred eecccccccccccCCccccEEEcc
Q 044245 463 LQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 463 i~~~~~~~~~~~l~~~~vDvivsE 486 (694)
+.+...++..+-++.++.|+|++-
T Consensus 114 ~~~d~~~~~~~~~~~~~fD~V~~~ 137 (293)
T 3thr_A 114 EEANWLTLDKDVPAGDGFDAVICL 137 (293)
T ss_dssp EECCGGGHHHHSCCTTCEEEEEEC
T ss_pred eecChhhCccccccCCCeEEEEEc
Confidence 888766554111235789999985
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.5e-06 Score=86.76 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=62.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||+||| |.+++. |+ | +++|+++|. ++.+.+.+++.++.||+. ++++++.++..++. ++.|+|
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~-~~~V~~vD~--s~~ai~~a~~n~~~n~l~-~~v~~~~~D~~~~~------~~fD~V 262 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-N-AKKIYAIDI--NPHAIELLKKNIKLNKLE-HKIIPILSDVREVD------VKGNRV 262 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-T-SSEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCC------CCEEEE
T ss_pred CCCEEEEccCccCHHHHh-cc-C-CCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEECChHHhc------CCCcEE
Confidence 67899999999 999999 88 5 899999999 888888999999999997 78999999766542 679999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++.|
T Consensus 263 i~dp 266 (336)
T 2yx1_A 263 IMNL 266 (336)
T ss_dssp EECC
T ss_pred EECC
Confidence 9984
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=77.39 Aligned_cols=109 Identities=6% Similarity=-0.026 Sum_probs=73.9
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.+.+.....+++.|||+||| |.++..+|+.| .+|+++|. ++.+.+.+++.++.++++ +|+++.+..+++..
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~-- 94 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG--YDVDAWDK--NAMSIANVERIKSIENLD--NLHTRVVDLNNLTF-- 94 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHHHHHTCT--TEEEEECCGGGCCC--
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC--CeEEEEEC--CHHHHHHHHHHHHhCCCC--CcEEEEcchhhCCC--
Confidence 34444444567899999999 98888888885 48999999 676667788888888884 59999887665432
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
.++.|+|++-..+. .++.+... -.-..+.+.|+|||.+
T Consensus 95 --~~~~D~v~~~~~l~----~~~~~~~~--~~l~~~~~~L~~gG~l 132 (199)
T 2xvm_A 95 --DRQYDFILSTVVLM----FLEAKTIP--GLIANMQRCTKPGGYN 132 (199)
T ss_dssp --CCCEEEEEEESCGG----GSCGGGHH--HHHHHHHHTEEEEEEE
T ss_pred --CCCceEEEEcchhh----hCCHHHHH--HHHHHHHHhcCCCeEE
Confidence 47899999864222 12112221 1112223479999974
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=80.24 Aligned_cols=107 Identities=11% Similarity=0.002 Sum_probs=71.8
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.+.+.....+++.|||+||| |.++..+++.| +++|+++|. ++.+.+.+++..+ . .+|+++.+..+++.
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~----~-~~~~~~~~d~~~~~--- 103 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDL--SERMLTEAKRKTT----S-PVVCYEQKAIEDIA--- 103 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHCC----C-TTEEEEECCGGGCC---
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHhhc----c-CCeEEEEcchhhCC---
Confidence 44455544567899999999 99999999986 779999999 6665556665444 3 68999998776554
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+++|+|++-..+. .+ + +... .. ..+.+.|+|||.++
T Consensus 104 ~~~~~fD~v~~~~~l~---~~-~-~~~~--~l-~~~~~~LkpgG~l~ 142 (253)
T 3g5l_A 104 IEPDAYNVVLSSLALH---YI-A-SFDD--IC-KKVYINLKSSGSFI 142 (253)
T ss_dssp CCTTCEEEEEEESCGG---GC-S-CHHH--HH-HHHHHHEEEEEEEE
T ss_pred CCCCCeEEEEEchhhh---hh-h-hHHH--HH-HHHHHHcCCCcEEE
Confidence 2357899999964221 11 1 1111 11 12234699999765
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.03 E-value=3.4e-06 Score=86.11 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=67.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC--c-------------------------
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC--F------------------------- 455 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--l------------------------- 455 (694)
.+++.||||||| |+++.++|+.| +++|++++. ++.+.+.|++.++.+. +
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~--s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDF--TDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEES--CHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh-hcceeeccc--cHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 467899999999 89999888886 889999999 7776677776655442 1
Q ss_pred -ccccEE-Eeecccccccc-cccCCccccEEEccccccCCccc-cCcchhhHHHHHhhcccccCCCceEE
Q 044245 456 -SIDRVE-ILQKGKKCLTM-DDTQQKKVDLLIGEPYYFGNDGM-LPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 456 -~~~~i~-vi~~~~~~~~~-~~l~~~~vDvivsE~~~~~~e~~-l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. .+|+ ++.+++++... ..+..+++|+|++=.... .+ ..++.+. -+-..+.++|||||.++
T Consensus 131 ~~-~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~---~i~~~~~~~~--~~l~~i~r~LKPGG~li 194 (263)
T 2a14_A 131 LR-AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME---CACCSLDAYR--AALCNLASLLKPGGHLV 194 (263)
T ss_dssp HH-HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH---HHCSSHHHHH--HHHHHHHTTEEEEEEEE
T ss_pred HH-hhhheEEeccccCCCCCCccccCCCCEeeehHHHH---HhcCCHHHHH--HHHHHHHHHcCCCcEEE
Confidence 1 2354 77776654211 111235799999964211 11 1111111 22222346899999664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-05 Score=77.72 Aligned_cols=115 Identities=8% Similarity=-0.015 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
.+.+.+.+.......+++.|||+||| |.++...++.| .+|+++|. ++.+.+.+++.++.+ .+|+++.+..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~~~~~----~~~~~~~~d~~ 107 (216)
T 3ofk_A 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDV--MPRAIGRACQRTKRW----SHISWAATDIL 107 (216)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEES--CHHHHHHHHHHTTTC----SSEEEEECCTT
T ss_pred HHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEEC--CHHHHHHHHHhcccC----CCeEEEEcchh
Confidence 34666777777666667899999999 99999998986 49999999 676666776665543 37999999877
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++. +.++.|+|++-..+. .+-+.+.+. -.-..+.+.|+|||.++
T Consensus 108 ~~~----~~~~fD~v~~~~~l~---~~~~~~~~~--~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 108 QFS----TAELFDLIVVAEVLY---YLEDMTQMR--TAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp TCC----CSCCEEEEEEESCGG---GSSSHHHHH--HHHHHHHHTEEEEEEEE
T ss_pred hCC----CCCCccEEEEccHHH---hCCCHHHHH--HHHHHHHHHcCCCCEEE
Confidence 665 257899999963211 111111110 11122334799999765
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7e-06 Score=81.21 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=60.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC---Ccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ---QKK 479 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~---~~~ 479 (694)
+++.||||||| |..++..|++-+ ..+|+++|. ++.+.+.+++.++.+|++ ++|+++.+...+... .+. .++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~~~~~~ 133 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEA--SEKHADIARSNIERANLN-DRVEVRTGLALDSLQ-QIENEKYEP 133 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-HHHHTTCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-HHHhcCCCC
Confidence 56799999999 988888888621 259999999 676677888889999997 899999998754321 111 156
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
+|+|+...
T Consensus 134 fD~v~~d~ 141 (223)
T 3duw_A 134 FDFIFIDA 141 (223)
T ss_dssp CSEEEECS
T ss_pred cCEEEEcC
Confidence 99998764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=82.47 Aligned_cols=104 Identities=9% Similarity=0.025 Sum_probs=72.0
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||+||| |.++..+++. | + +|++++. ++.+.+.+++.++.+|+. ++|+++.+..+++. ++.++
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~-~v~gvD~--s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---~~~~~ 150 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG-V-SIDCLNI--APVQNKRNEEYNNQAGLA-DNITVKYGSFLEIP---CEDNS 150 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-C-EEEEEES--CHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCS---SCTTC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC-C-EEEEEeC--CHHHHHHHHHHHHhcCCC-cceEEEEcCcccCC---CCCCC
Confidence 44567899999999 8777777775 5 4 8999999 676667778888888887 89999999776653 23468
Q ss_pred ccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 480 VDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.|+|++-..... ++ .... +. ..+.+.|||||.++
T Consensus 151 fD~v~~~~~l~~----~~-~~~~--~l-~~~~~~LkpgG~l~ 184 (297)
T 2o57_A 151 YDFIWSQDAFLH----SP-DKLK--VF-QECARVLKPRGVMA 184 (297)
T ss_dssp EEEEEEESCGGG----CS-CHHH--HH-HHHHHHEEEEEEEE
T ss_pred EeEEEecchhhh----cC-CHHH--HH-HHHHHHcCCCeEEE
Confidence 999998632111 11 1111 11 12234799999775
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=80.92 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++.+|+..+..+|+++|. ++.+.+.+++.++.+|++ +|+++.++..+. ++.++.|+|
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~--s~~~l~~a~~n~~~~~~~--~v~~~~~d~~~~----~~~~~fD~I 180 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDR--MPDAVSLAQRNAQHLAIK--NIHILQSDWFSA----LAGQQFAMI 180 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECS--SHHHHHHHHHHHHHHTCC--SEEEECCSTTGG----GTTCCEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--ceEEEEcchhhh----cccCCccEE
Confidence 56789999999 888887776423579999999 787778889999888984 699999876543 224679999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
|+-|
T Consensus 181 v~np 184 (276)
T 2b3t_A 181 VSNP 184 (276)
T ss_dssp EECC
T ss_pred EECC
Confidence 9984
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=80.88 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=60.9
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
+.....++..||||||| |.++...++.+ .+|+++|. ++.+.+.+++.++.+|+. +++++.++.+++. ++.
T Consensus 31 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~--s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~l~---~~~ 101 (260)
T 1vl5_A 31 QIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDL--TEDILKVARAFIEGNGHQ--QVEYVQGDAEQMP---FTD 101 (260)
T ss_dssp HHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEECCC-CCC---SCT
T ss_pred HHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeC--CHHHHHHHHHHHHhcCCC--ceEEEEecHHhCC---CCC
Confidence 33334467899999999 99998888885 39999999 676666778888888884 6999998776654 335
Q ss_pred ccccEEEcc
Q 044245 478 KKVDLLIGE 486 (694)
Q Consensus 478 ~~vDvivsE 486 (694)
+..|+|++-
T Consensus 102 ~~fD~V~~~ 110 (260)
T 1vl5_A 102 ERFHIVTCR 110 (260)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEEEh
Confidence 789999986
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-05 Score=80.33 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 403 GRVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 403 ~~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..++..||||||| | +.++++|+.-| .+|+++|. ++.+.+.|++.++..|+ ++|+++.++..++. .+..
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~g-a~V~gIDi--s~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l~-----d~~F 189 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEI--EPDIAELSRKVIEGLGV--DGVNVITGDETVID-----GLEF 189 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTC-CEEEEEES--SHHHHHHHHHHHHHHTC--CSEEEEESCGGGGG-----GCCC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccC-CEEEEEEC--CHHHHHHHHHHHHhcCC--CCeEEEECchhhCC-----CCCc
Confidence 3467899999999 4 66677788532 58999999 77777788888888888 68999999877653 3679
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++... .+ ..-. . -..+.+.|||||+++
T Consensus 190 DvV~~~a~-------~~-d~~~--~-l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 190 DVLMVAAL-------AE-PKRR--V-FRNIHRYVDTETRII 219 (298)
T ss_dssp SEEEECTT-------CS-CHHH--H-HHHHHHHCCTTCEEE
T ss_pred CEEEECCC-------cc-CHHH--H-HHHHHHHcCCCcEEE
Confidence 99987541 22 2111 1 112234699999877
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-05 Score=78.47 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=73.7
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.....++..|||+|+| |.+++.+|+. +.+|+++|. ++.+.+.+++..+.++++ ++++++.++..+.. +
T Consensus 83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---~ 154 (248)
T 2yvl_A 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEA--VEEFYKTAQKNLKKFNLG-KNVKFFNVDFKDAE---V 154 (248)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECS--CHHHHHHHHHHHHHTTCC-TTEEEECSCTTTSC---C
T ss_pred HHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEec--CHHHHHHHHHHHHHcCCC-CcEEEEEcChhhcc---c
Confidence 3333444567899999999 9999988888 479999999 777777888888888987 78999988765432 1
Q ss_pred CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 476 QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 476 ~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.+++|+|++.+- -+|..+. .+ .++|+|||.++
T Consensus 155 ~~~~~D~v~~~~~-------~~~~~l~--~~----~~~L~~gG~l~ 187 (248)
T 2yvl_A 155 PEGIFHAAFVDVR-------EPWHYLE--KV----HKSLMEGAPVG 187 (248)
T ss_dssp CTTCBSEEEECSS-------CGGGGHH--HH----HHHBCTTCEEE
T ss_pred CCCcccEEEECCc-------CHHHHHH--HH----HHHcCCCCEEE
Confidence 2467999998541 1223231 11 23589999654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=78.54 Aligned_cols=106 Identities=9% Similarity=-0.054 Sum_probs=67.9
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhc----------cCCc-----ccccEEEeeccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVAD----------PNCF-----SIDRVEILQKGK 467 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~----------~N~l-----~~~~i~vi~~~~ 467 (694)
.++..|||+||| |.++...|+.| . +|+++|. ++.+.+.|++... .+++ ...+|+++.++.
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G-~-~V~gvD~--S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRG-H-TVVGVEI--SEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT-C-EEEEECS--CHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCC-C-eEEEEEC--CHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 356789999999 99888888886 5 8999999 7766556544321 1111 015799999987
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.++...+ .++.|+|++-..+. .++.+... -+.+ .+.++|||||+++
T Consensus 143 ~~l~~~~--~~~FD~V~~~~~l~----~l~~~~~~-~~l~-~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 143 FDLPRAN--IGKFDRIWDRGALV----AINPGDHD-RYAD-IILSLLRKEFQYL 188 (252)
T ss_dssp TTGGGGC--CCCEEEEEESSSTT----TSCGGGHH-HHHH-HHHHTEEEEEEEE
T ss_pred ccCCccc--CCCEEEEEEhhhhh----hCCHHHHH-HHHH-HHHHHcCCCeEEE
Confidence 7765422 26899999864322 23423221 0222 2345799999763
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.6e-06 Score=79.86 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcC-CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQG-RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~-~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
++.+.+.+.+.... .+++.|||+||| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.|++ +++++.++.
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~---~~~~~~~d~ 88 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDL--SMDALAVARRNAERFGA---VVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEEC--C----------------------CCHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHHHHhCC---ceEEEEcch
Confidence 44455555555433 467899999999 999998888853459999999 66666677777777765 588888765
Q ss_pred ccccccc--cCCccccEEEccc
Q 044245 468 KCLTMDD--TQQKKVDLLIGEP 487 (694)
Q Consensus 468 ~~~~~~~--l~~~~vDvivsE~ 487 (694)
.+. ..+ ...++.|+|++-|
T Consensus 89 ~~~-~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 89 IEW-LIERAERGRPWHAIVSNP 109 (215)
T ss_dssp HHH-HHHHHHTTCCBSEEEECC
T ss_pred Hhh-hhhhhhccCcccEEEECC
Confidence 541 111 0127899999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=85.26 Aligned_cols=109 Identities=12% Similarity=0.108 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhcc-------CCcc--cccEEEeec
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADP-------NCFS--IDRVEILQK 465 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~-------N~l~--~~~i~vi~~ 465 (694)
+.......++..|||+||| |.+++.+|+. |...+|+++|. ++.+.+.|++.++. |++. .++|+++.+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEV--RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES--SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeC--CHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 3344445678899999999 9999988887 52389999999 77666777777663 4442 158999998
Q ss_pred ccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.++... .++.+++|+|++-+ ..+|..+ ..+.+.|+|||.++
T Consensus 175 d~~~~~~-~~~~~~fD~V~~~~-------~~~~~~l------~~~~~~LkpgG~lv 216 (336)
T 2b25_A 175 DISGATE-DIKSLTFDAVALDM-------LNPHVTL------PVFYPHLKHGGVCA 216 (336)
T ss_dssp CTTCCC--------EEEEEECS-------SSTTTTH------HHHGGGEEEEEEEE
T ss_pred ChHHccc-ccCCCCeeEEEECC-------CCHHHHH------HHHHHhcCCCcEEE
Confidence 7765421 23345799999864 1233322 11234699999876
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=79.19 Aligned_cols=76 Identities=11% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 404 RVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++..|||+||| |.+++.+|+.+ ..+|+++|. ++.+.+.+++.++.||+ +++++.++.+.+. .++.++.|
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~--s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~--~~~~~~fD 125 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEV--DEEFFEYARRNIERNNS---NVRLVKSNGGIIK--GVVEGTFD 125 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEEC--CHHHHHHHHHHHHHTTC---CCEEEECSSCSST--TTCCSCEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEEC--CHHHHHHHHHHHHHhCC---CcEEEeCCchhhh--hcccCcee
Confidence 367899999999 79999999985 579999999 77777888999999887 5889988754333 23347899
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+|++-|
T Consensus 126 ~I~~np 131 (230)
T 3evz_A 126 VIFSAP 131 (230)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999985
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=77.61 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=60.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++..+|+.....+|+++|. ++.+.+.|++.++.+|+ ++|+++.+..+++.. .++.+++|+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~--s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~-~~~~~~~D~i 115 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDI--QKSVLSYALDKVLEVGV--PNIKLLWVDGSDLTD-YFEDGEIDRL 115 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHCC--SSEEEEECCSSCGGG-TSCTTCCSEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEc--CHHHHHHHHHHHHHcCC--CCEEEEeCCHHHHHh-hcCCCCCCEE
Confidence 46789999999 988887777643469999999 77777788888888888 479999998776541 1334679999
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
++-
T Consensus 116 ~~~ 118 (214)
T 1yzh_A 116 YLN 118 (214)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=80.13 Aligned_cols=78 Identities=8% Similarity=0.058 Sum_probs=61.3
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
....++..|||+||| |.++..+++.+ .+|+++|. ++.+.+.+++.++.+++. +|+++.+..+++. ++.+.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~---~~~~~ 87 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDA--TKEMVEVASSFAQEKGVE--NVRFQQGTAESLP---FPDDS 87 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEES--CHHHHHHHHHHHHHHTCC--SEEEEECBTTBCC---SCTTC
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEEC--CHHHHHHHHHHHHHcCCC--CeEEEecccccCC---CCCCc
Confidence 334567899999999 99999999885 49999999 676667778888888874 7999998776654 23478
Q ss_pred ccEEEccc
Q 044245 480 VDLLIGEP 487 (694)
Q Consensus 480 vDvivsE~ 487 (694)
.|+|++-.
T Consensus 88 fD~v~~~~ 95 (239)
T 1xxl_A 88 FDIITCRY 95 (239)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 99999863
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.99 E-value=5e-06 Score=82.35 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=71.5
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC----c
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ----K 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~----~ 478 (694)
+++.|||+||| |..++..|+. ++..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+... .+.. +
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~~~~~~ 139 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDV--DEKSTALAKEYWEKAGLS-DKIGLRLSPAKDTLA-ELIHAGQAW 139 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-HHHTTTCTT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCC-CceEEEeCCHHHHHH-HhhhccCCC
Confidence 56789999999 9888888885 22479999999 777777889999999997 889999998754421 1111 6
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++|+|+..+-.. .... +.+ ...++|+|||.++
T Consensus 140 ~fD~v~~~~~~~--------~~~~--~l~-~~~~~L~pgG~lv 171 (225)
T 3tr6_A 140 QYDLIYIDADKA--------NTDL--YYE-ESLKLLREGGLIA 171 (225)
T ss_dssp CEEEEEECSCGG--------GHHH--HHH-HHHHHEEEEEEEE
T ss_pred CccEEEECCCHH--------HHHH--HHH-HHHHhcCCCcEEE
Confidence 799999654110 0111 111 1224699999876
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=77.97 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 388 EWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 388 ~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
.+.+.+.+.+.+... ++..|||+||| |.++..+++.| . +|+++|. ++.+.+.+++..+.++ .+|+++.++
T Consensus 23 ~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~~~~~~~---~~~~~~~~d 93 (227)
T 1ve3_A 23 SRIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYG-F-EVVGVDI--SEDMIRKAREYAKSRE---SNVEFIVGD 93 (227)
T ss_dssp HHHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHHHHTT---CCCEEEECC
T ss_pred HHHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHhcC---CCceEEECc
Confidence 344455555555543 36789999999 99999999986 4 9999999 6766667777777766 368999887
Q ss_pred cccccccccCCccccEEEccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~ 487 (694)
..++. ++.++.|+|++-.
T Consensus 94 ~~~~~---~~~~~~D~v~~~~ 111 (227)
T 1ve3_A 94 ARKLS---FEDKTFDYVIFID 111 (227)
T ss_dssp TTSCC---SCTTCEEEEEEES
T ss_pred hhcCC---CCCCcEEEEEEcC
Confidence 66543 2346899999875
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-05 Score=81.47 Aligned_cols=114 Identities=14% Similarity=0.027 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
+.+.+.......+++.||||||| |.++..+++.+...+|+++|. ++.+.+.+++.+..++++ +++++.++.+++.
T Consensus 25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~ 100 (276)
T 3mgg_A 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI--SPESLEKARENTEKNGIK--NVKFLQANIFSLP 100 (276)
T ss_dssp HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEECCGGGCC
T ss_pred HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--CcEEEEcccccCC
Confidence 34444444444567899999999 888888888743479999999 676667788888888884 6999998766554
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+++|+|++-..+. .+-++. . .. ..+.+.|+|||.++
T Consensus 101 ---~~~~~fD~v~~~~~l~---~~~~~~--~--~l-~~~~~~L~pgG~l~ 139 (276)
T 3mgg_A 101 ---FEDSSFDHIFVCFVLE---HLQSPE--E--AL-KSLKKVLKPGGTIT 139 (276)
T ss_dssp ---SCTTCEEEEEEESCGG---GCSCHH--H--HH-HHHHHHEEEEEEEE
T ss_pred ---CCCCCeeEEEEechhh---hcCCHH--H--HH-HHHHHHcCCCcEEE
Confidence 2357899999864222 111111 1 11 12234699999664
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.3e-06 Score=91.50 Aligned_cols=116 Identities=14% Similarity=-0.025 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCC--ccC------CCccEEEEEcCCHHHHHHHHHHHHHcCCCC----cEEEEe
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDST--TSL------NTKGMVTACESYLPMVKLMKKVLHVNGMGR----NIKVIN 133 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~--~~~------~~~~~V~avE~s~~~~~~A~~~~~~ngl~~----~I~vi~ 133 (694)
++.+|||.+||||.+.+.+++........ ... ....+++|+|+++.+++.|+.++..+|+.. ++.+++
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 46799999999999998888764210000 000 001379999999999999999999888863 277888
Q ss_pred ccccccccccCCCCCccEEEEccccccccCC-----------C-hHHHHHHHHHhccCCCCeE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGE-----------G-LIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e-----------~-~l~~l~~~~~~~L~p~G~i 184 (694)
+|....... ..++||+|+++|........ . ....+.++ -++|+|||++
T Consensus 249 gDtL~~~~~--~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~-l~~Lk~gGr~ 308 (541)
T 2ar0_A 249 GNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHI-IETLHPGGRA 308 (541)
T ss_dssp SCTTSHHHH--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHH-HHHEEEEEEE
T ss_pred CCCcccccc--cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHH-HHHhCCCCEE
Confidence 887653311 12589999999865432211 1 12233334 4589998864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.1e-06 Score=89.51 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=66.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc--CCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT--QQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l--~~~~vD 481 (694)
+++.|||+||| |.+++.+|+.| +++|+++|. ++.+.+.+++.++.||++ ++++++.++..++... + ..++.|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~--s~~~l~~a~~n~~~n~~~-~~v~~~~~d~~~~~~~-~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDK--SPRAIETAKENAKLNGVE-DRMKFIVGSAFEEMEK-LQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHH-HHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeC--CHHHHHHHHHHHHHcCCC-ccceEEECCHHHHHHH-HHhhCCCCC
Confidence 57899999999 99999999985 899999999 787888899999999997 6999999987654321 1 136799
Q ss_pred EEEccc-ccc
Q 044245 482 LLIGEP-YYF 490 (694)
Q Consensus 482 vivsE~-~~~ 490 (694)
+||+.| +|.
T Consensus 292 ~Vi~dpP~~~ 301 (396)
T 2as0_A 292 IVVLDPPAFV 301 (396)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 999985 443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=9.3e-06 Score=80.50 Aligned_cols=78 Identities=8% Similarity=0.001 Sum_probs=58.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++.+||||||| |.+++..|+.+...+|+++|. ++.+...+++.++.+|++ +|+++.++.+++-...++...+|.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~--s~~~l~~a~~~~~~~~l~--nv~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEV--HSPGVGACLASAHEEGLS--NLRVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECS--CHHHHHHHHHHHHHTTCS--SEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEe--cHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHcCCCChheE
Confidence 45789999999 877777776643568999999 666666778888889985 5999999877652212345778988
Q ss_pred Ecc
Q 044245 484 IGE 486 (694)
Q Consensus 484 vsE 486 (694)
++-
T Consensus 110 ~~~ 112 (218)
T 3dxy_A 110 QLF 112 (218)
T ss_dssp EEE
T ss_pred EEe
Confidence 763
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.7e-06 Score=82.13 Aligned_cols=79 Identities=6% Similarity=-0.021 Sum_probs=61.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC----Cc
Q 044245 405 VQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ----QK 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~----~~ 478 (694)
+++.|||+||| |.+++..|++. +..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+.-. .+. .+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~~-~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEV--DAQPPELGRPLWRQAEAE-HKIDLRLKPALETLD-ELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH-HHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHCCCC-CeEEEEEcCHHHHHH-HHHhcCCCC
Confidence 56799999999 99988888862 2579999999 666667888899999997 899999987654311 121 15
Q ss_pred cccEEEccc
Q 044245 479 KVDLLIGEP 487 (694)
Q Consensus 479 ~vDvivsE~ 487 (694)
++|+|++.+
T Consensus 145 ~~D~v~~d~ 153 (229)
T 2avd_A 145 TFDVAVVDA 153 (229)
T ss_dssp CEEEEEECS
T ss_pred CccEEEECC
Confidence 799999875
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.3e-05 Score=84.14 Aligned_cols=112 Identities=11% Similarity=0.018 Sum_probs=70.5
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHH-------HHHhccCCcccccEEEeeccccc
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYL-------RTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~-------~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.+.....++..||||||| |.+++.+|+..|+.+|+++|. ++.+.+.| ++.++.+|++.++|+++.+....
T Consensus 235 l~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDi--s~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 235 YQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEI--MDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp HHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEEC--CHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeC--CHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 334444567899999999 999988888534789999999 66665666 77777888421589998864221
Q ss_pred c--cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 470 L--TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~--~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. .... .....|+|++-.+. .. ..+.- .. .++.+.|+|||+++
T Consensus 313 ~~~~~~~-~~~~FDvIvvn~~l------~~-~d~~~-~L-~el~r~LKpGG~lV 356 (433)
T 1u2z_A 313 DNNRVAE-LIPQCDVILVNNFL------FD-EDLNK-KV-EKILQTAKVGCKII 356 (433)
T ss_dssp TCHHHHH-HGGGCSEEEECCTT------CC-HHHHH-HH-HHHHTTCCTTCEEE
T ss_pred ccccccc-ccCCCCEEEEeCcc------cc-ccHHH-HH-HHHHHhCCCCeEEE
Confidence 0 0000 12578999975321 11 22210 11 23345799999754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-05 Score=79.32 Aligned_cols=77 Identities=10% Similarity=-0.080 Sum_probs=61.3
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.++..+++.| ..+|+++|. ++.+.+.+++.+..+++. ++|+++.+..+++... +.++.|+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~--~~~~fD~ 136 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDI--AEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMD--LGKEFDV 136 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEES--CHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCC--CSSCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEEC--CHHHHHHHHHHHHhcCCC-ccEEEEECCccccccC--CCCCcCE
Confidence 467899999999 87777777876 779999999 776667788888888886 7899999977655321 2568999
Q ss_pred EEcc
Q 044245 483 LIGE 486 (694)
Q Consensus 483 ivsE 486 (694)
|++-
T Consensus 137 v~~~ 140 (298)
T 1ri5_A 137 ISSQ 140 (298)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9986
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=80.70 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=55.2
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-cccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-DDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~~l~~~~vD 481 (694)
.++..|||+||| |.++..+|+..|..+|+++|. ++.+.+.+++.++.+ ++|+++.++.++... ..+. +++|
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~--s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~-~~~D 145 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEY--APRIMRELLDACAER----ENIIPILGDANKPQEYANIV-EKVD 145 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEES--CHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEEC--CHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccC-ccEE
Confidence 356789999999 888887777623789999999 776666666666654 468898887665211 1222 6799
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+|+.++
T Consensus 146 ~v~~~~ 151 (230)
T 1fbn_A 146 VIYEDV 151 (230)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999553
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=79.42 Aligned_cols=83 Identities=7% Similarity=0.047 Sum_probs=60.6
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.....++..|||+||| |.++..+|+.++ .+|+++|. ++.+.+.+++.++.+|+. +|+++.+... ....
T Consensus 83 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~--~~~~~~~a~~~~~~~~~~--~v~~~~~d~~-~~~~-- 154 (235)
T 1jg1_A 83 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIER--IPELVEFAKRNLERAGVK--NVHVILGDGS-KGFP-- 154 (235)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEESCGG-GCCG--
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeC--CHHHHHHHHHHHHHcCCC--CcEEEECCcc-cCCC--
Confidence 3334444567899999999 988888888764 89999998 676667888888889985 4999888641 1111
Q ss_pred CCccccEEEccc
Q 044245 476 QQKKVDLLIGEP 487 (694)
Q Consensus 476 ~~~~vDvivsE~ 487 (694)
...+.|+||+-.
T Consensus 155 ~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 155 PKAPYDVIIVTA 166 (235)
T ss_dssp GGCCEEEEEECS
T ss_pred CCCCccEEEECC
Confidence 123589999764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=80.24 Aligned_cols=84 Identities=13% Similarity=-0.055 Sum_probs=63.3
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEeeccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.+.....++..|||+||| |.+++.+|+. |...+|+++|. ++.+.+.+++.++.+ |. ++|+++.++..+..
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~--~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~-- 161 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEA--RPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAE-- 161 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCC--
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHhcCC--CCEEEEECchhhcC--
Confidence 4444444577899999999 8888888887 43479999999 676667788888777 73 68999998766542
Q ss_pred ccCCccccEEEccc
Q 044245 474 DTQQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l~~~~vDvivsE~ 487 (694)
++.+++|+|++.+
T Consensus 162 -~~~~~~D~v~~~~ 174 (258)
T 2pwy_A 162 -LEEAAYDGVALDL 174 (258)
T ss_dssp -CCTTCEEEEEEES
T ss_pred -CCCCCcCEEEECC
Confidence 3346799999854
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=80.91 Aligned_cols=83 Identities=5% Similarity=-0.128 Sum_probs=61.2
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEeeccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.......++..|||+||| |.+++.+|+. +...+|+++|. ++.+.+.+++.++.+ |. ++++++.++.++
T Consensus 102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~---- 173 (275)
T 1yb2_A 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER--DEDNLKKAMDNLSEFYDI--GNVRTSRSDIAD---- 173 (275)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECS--CHHHHHHHHHHHHTTSCC--TTEEEECSCTTT----
T ss_pred HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHhcCCC--CcEEEEECchhc----
Confidence 3334444567899999999 8888888876 33579999999 777777888888888 85 589999987654
Q ss_pred ccCCccccEEEccc
Q 044245 474 DTQQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l~~~~vDvivsE~ 487 (694)
.++.+++|+|++.+
T Consensus 174 ~~~~~~fD~Vi~~~ 187 (275)
T 1yb2_A 174 FISDQMYDAVIADI 187 (275)
T ss_dssp CCCSCCEEEEEECC
T ss_pred cCcCCCccEEEEcC
Confidence 12346799999853
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=7e-06 Score=88.28 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=65.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC---------------CcccccEEEeecccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN---------------CFSIDRVEILQKGKK 468 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N---------------~l~~~~i~vi~~~~~ 468 (694)
++..|||+|+| |++++.+|+..++.+|+++|. ++.+.++++++++.| |++ + |++++++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi--~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~-i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDI--SEDAYELMKRNVMLNFDGELRESKGRAILKGEK-T-IVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEES--CHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-E-EEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHHHHhcccccccccccccccCCC-c-eEEEcCcHH
Confidence 56789999999 999999999733678999999 888888999999999 886 4 999999876
Q ss_pred cccccccCCccccEEEcccccc
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~ 490 (694)
++-.. + .++.|+|+..||+.
T Consensus 123 ~~~~~-~-~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 123 RLMAE-R-HRYFHFIDLDPFGS 142 (378)
T ss_dssp HHHHH-S-TTCEEEEEECCSSC
T ss_pred HHHHh-c-cCCCCEEEeCCCCC
Confidence 54321 1 35799999999754
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=83.73 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
+...+++.......++..|||+||| |.++..||+.+ ...+|+++|. ++.+.+.|++.++.+|++ +|++++++.+
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di--~~~~i~~a~~n~~~~g~~--~i~~~~~D~~ 264 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDL--DEKRLGLAREAALASGLS--WIRFLRADAR 264 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEES--CHHHHHHHHHHHHHTTCT--TCEEEECCGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEEC--CHHHHHHHHHHHHHcCCC--ceEEEeCChh
Confidence 3455566666655577899999999 88888888864 3579999999 777778899999999994 8999999887
Q ss_pred cccccccCCccccEEEccccc
Q 044245 469 CLTMDDTQQKKVDLLIGEPYY 489 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~ 489 (694)
++... ....|+||+.|-|
T Consensus 265 ~~~~~---~~~~D~Ii~npPy 282 (354)
T 3tma_A 265 HLPRF---FPEVDRILANPPH 282 (354)
T ss_dssp GGGGT---CCCCSEEEECCCS
T ss_pred hCccc---cCCCCEEEECCCC
Confidence 76542 2457999998533
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=78.65 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=64.6
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++..|||+||| |.++..+|+. |+..+|+++|. ++.+.+.+.+.++.| .+++++.++.++...-....+++|
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~--s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF--SHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECC--CHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCCcEE
Confidence 357799999999 8887777765 43579999999 654433444555554 368999987765431111246899
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++.+. .++..-. +.+ ...++|+|||.++
T Consensus 150 ~V~~~~~-------~~~~~~~--~~~-~~~~~LkpgG~l~ 179 (233)
T 2ipx_A 150 VIFADVA-------QPDQTRI--VAL-NAHTFLRNGGHFV 179 (233)
T ss_dssp EEEECCC-------CTTHHHH--HHH-HHHHHEEEEEEEE
T ss_pred EEEEcCC-------CccHHHH--HHH-HHHHHcCCCeEEE
Confidence 9999752 2322211 111 1234699999654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.93 E-value=7e-06 Score=82.32 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=60.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc---------
Q 044245 405 VQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD--------- 473 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~--------- 473 (694)
+++.|||+||| |.++...|+..+ ..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+....
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDV--SEEWTNVARKYWKENGLE-NKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CCEEEEECCHHHHHHHHHhhccccc
Confidence 56789999999 988888888632 469999999 777777888888889997 7899999876542110
Q ss_pred ---ccC-C-ccccEEEccc
Q 044245 474 ---DTQ-Q-KKVDLLIGEP 487 (694)
Q Consensus 474 ---~l~-~-~~vDvivsE~ 487 (694)
.++ . +++|+|++..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~ 155 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDA 155 (239)
T ss_dssp GGTTTCCSTTCEEEEEECS
T ss_pred ccccccCCCCCcCEEEEeC
Confidence 011 1 6799998763
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.5e-05 Score=80.08 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccC-C-cccccEEEeecccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPN-C-FSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N-~-l~~~~i~vi~~~~~~~~~ 472 (694)
|.+.....++..|||+||| |.++..+|+. |...+|+++|. ++.+.+.+++.++.+ | +. ++++++.++..+..
T Consensus 91 i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~g~~~-~~v~~~~~d~~~~~- 166 (280)
T 1i9g_A 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQ--RADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSE- 166 (280)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECS--CHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCC-
T ss_pred HHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHhcCCCC-CcEEEEECchHhcC-
Confidence 4444444567899999999 8888877774 43579999999 676667778777776 5 54 68999998766553
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++.+.+|+|++.+ --+|..|. .+ .+.|+|||.+
T Consensus 167 --~~~~~~D~v~~~~-------~~~~~~l~--~~----~~~L~pgG~l 199 (280)
T 1i9g_A 167 --LPDGSVDRAVLDM-------LAPWEVLD--AV----SRLLVAGGVL 199 (280)
T ss_dssp --CCTTCEEEEEEES-------SCGGGGHH--HH----HHHEEEEEEE
T ss_pred --CCCCceeEEEECC-------cCHHHHHH--HH----HHhCCCCCEE
Confidence 2346799999853 13344332 11 2258998854
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=77.74 Aligned_cols=85 Identities=9% Similarity=-0.032 Sum_probs=61.1
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
.+.+.....++..|||+||| |.++..+++.+|. .+|+++|. ++.+.+.+++.++.+++. +++++.+...+..
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~-- 141 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIER--IPELAEKAERTLRKLGYD--NVIVIVGDGTLGY-- 141 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHHTCT--TEEEEESCGGGCC--
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC--CeEEEECCcccCC--
Confidence 34444444567899999999 8888888887533 79999999 676667778888778884 5999888653211
Q ss_pred ccCCccccEEEccc
Q 044245 474 DTQQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l~~~~vDvivsE~ 487 (694)
...++.|+|++-.
T Consensus 142 -~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 142 -EPLAPYDRIYTTA 154 (215)
T ss_dssp -GGGCCEEEEEESS
T ss_pred -CCCCCeeEEEECC
Confidence 1135799999864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.3e-05 Score=80.07 Aligned_cols=116 Identities=9% Similarity=0.025 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccC-CcccccEEEeeccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPN-CFSIDRVEILQKGKKC 469 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l~~~~i~vi~~~~~~ 469 (694)
+.+.|.+... .++..||||||| |.++...|+. +...+|+++|. ++.+.+.+++.++.+ +.. .+|+++.+..++
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~ 100 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDL--SATMIKTAEVIKEGSPDTY-KNVSFKISSSDD 100 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEES--CHHHHHHHHHHHHHCC-CC-TTEEEEECCTTC
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHHHHHhccCCC-CceEEEEcCHHh
Confidence 4444555433 257899999999 9888888862 13689999999 676666777777766 554 789999998887
Q ss_pred ccccc---cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 470 LTMDD---TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~~~---l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+...+ +..+++|+|++-.... -+ .+..+ -..+.+.|+|||.++
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~---~~-~~~~~-----l~~~~~~LkpgG~l~ 146 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAH---WF-DFEKF-----QRSAYANLRKDGTIA 146 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGG---GS-CHHHH-----HHHHHHHEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHhhHHH---Hh-CHHHH-----HHHHHHhcCCCcEEE
Confidence 65422 1126899999853211 11 21111 112234699999764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.91 E-value=3.4e-05 Score=77.52 Aligned_cols=112 Identities=12% Similarity=-0.035 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.+.+.....++..||||||| |.++...++.| ..+|+++|. ++.+.+.+++.+..+ .+++++.+..+++.
T Consensus 82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~- 153 (254)
T 1xtp_A 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEP--VKHMLEEAKRELAGM----PVGKFILASMETAT- 153 (254)
T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEES--CHHHHHHHHHHTTTS----SEEEEEESCGGGCC-
T ss_pred HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeC--CHHHHHHHHHHhccC----CceEEEEccHHHCC-
Confidence 3444444444467899999999 98888888886 789999999 666666666655543 47899988766553
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+++|+|++-.... .++-..+. ..-..+.+.|+|||.++
T Consensus 154 --~~~~~fD~v~~~~~l~----~~~~~~~~--~~l~~~~~~LkpgG~l~ 194 (254)
T 1xtp_A 154 --LPPNTYDLIVIQWTAI----YLTDADFV--KFFKHCQQALTPNGYIF 194 (254)
T ss_dssp --CCSSCEEEEEEESCGG----GSCHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred --CCCCCeEEEEEcchhh----hCCHHHHH--HHHHHHHHhcCCCeEEE
Confidence 3357899999864211 12101111 11122234799999765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=80.97 Aligned_cols=94 Identities=6% Similarity=-0.023 Sum_probs=66.0
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+++|.... ....++.|||||+| |.++..+++..++.+|++||- ++.+.+++++.+.. +++..++++++.++
T Consensus 60 ~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEi--d~~~v~~ar~~~~~~~~~~~~~rv~v~~~D 137 (275)
T 1iy9_A 60 VYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDI--DGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137 (275)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEES--CHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCchHHHHHHHHhCCCCceEEEEEC--CHHHHHHHHHHhHhhccccCCCceEEEECc
Confidence 4666655431 11245789999999 999999888733789999999 77766777776543 35633689999987
Q ss_pred cccccccccCCccccEEEccccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYY 489 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~ 489 (694)
..+.-. . ..++.|+|++.+++
T Consensus 138 ~~~~l~-~-~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 138 GFMHIA-K-SENQYDVIMVDSTE 158 (275)
T ss_dssp SHHHHH-T-CCSCEEEEEESCSS
T ss_pred HHHHHh-h-CCCCeeEEEECCCC
Confidence 654311 1 14689999998754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.4e-06 Score=85.09 Aligned_cols=102 Identities=4% Similarity=-0.062 Sum_probs=69.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc----CCc
Q 044245 405 VQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT----QQK 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l----~~~ 478 (694)
+++.||||||| |..++..|++- ...+|+++|. ++.+.+.|++.++.+|++ ++|+++.+...++-. .+ ..+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~-~~~~~~~~~ 135 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDI--NEGWTKHAHPYWREAKQE-HKIKLRLGPALDTLH-SLLNEGGEH 135 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEEC--CCSSCCCSHHHHHHTTCT-TTEEEEESCHHHHHH-HHHHHHCSS
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-HHhhccCCC
Confidence 46789999999 99998888852 1368999998 444445667788889997 899999998765422 11 026
Q ss_pred cccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++|+|+...- .. .... +.+. ..++|+|||.++
T Consensus 136 ~fD~V~~d~~-------~~-~~~~--~l~~-~~~~LkpGG~lv 167 (242)
T 3r3h_A 136 QFDFIFIDAD-------KT-NYLN--YYEL-ALKLVTPKGLIA 167 (242)
T ss_dssp CEEEEEEESC-------GG-GHHH--HHHH-HHHHEEEEEEEE
T ss_pred CEeEEEEcCC-------hH-HhHH--HHHH-HHHhcCCCeEEE
Confidence 7999987641 11 1111 1111 224799999765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=76.66 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=60.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc---cccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS---IDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~---~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
+++.|||+||| |.++..+|+.| + +|+++|. ++.+.+.+++.++.+++. .++++++.+..+++. ++.+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 102 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKG-Y-SVTGIDI--NSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---FHDSSF 102 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC---SCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhCC-C-eEEEEEC--CHHHHHHHHHHHHhcCCccccCcceEEEEecccccC---CCCCce
Confidence 56799999999 99998888885 4 8999999 776677888888888873 147999998776554 235789
Q ss_pred cEEEccc
Q 044245 481 DLLIGEP 487 (694)
Q Consensus 481 DvivsE~ 487 (694)
|+|++-.
T Consensus 103 D~v~~~~ 109 (235)
T 3sm3_A 103 DFAVMQA 109 (235)
T ss_dssp EEEEEES
T ss_pred eEEEEcc
Confidence 9999863
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-05 Score=76.21 Aligned_cols=101 Identities=9% Similarity=-0.015 Sum_probs=66.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-cccCCccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-DDTQQKKV 480 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~~l~~~~v 480 (694)
.++..|||+||| |.++..+|+. |...+|+++|. ++.+.+.+++.++.+ ++|+++.++.++... ..+ ++++
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~--s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~-~~~~ 144 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF--SPRVLRELVPIVEER----RNIVPILGDATKPEEYRAL-VPKV 144 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTT-CCCE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEEC--CHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcc-cCCc
Confidence 357799999999 9888888865 43479999999 676555666666665 479999987765432 122 3579
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++.+. .++..-. +.+. ..++|+|||.++
T Consensus 145 D~v~~~~~-------~~~~~~~--~l~~-~~~~LkpgG~l~ 175 (227)
T 1g8a_A 145 DVIFEDVA-------QPTQAKI--LIDN-AEVYLKRGGYGM 175 (227)
T ss_dssp EEEEECCC-------STTHHHH--HHHH-HHHHEEEEEEEE
T ss_pred eEEEECCC-------CHhHHHH--HHHH-HHHhcCCCCEEE
Confidence 99998752 2222111 1222 234699999654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=79.83 Aligned_cols=109 Identities=12% Similarity=0.046 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEee-ccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQ-KGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~-~~~~~ 469 (694)
...++|.......++++|||+||| |.++..+++.| |++|||++.+. .|.. .+ .+.+ .++.+.. .+++.
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~-~mL~-~a---~r~~----~rv~~~~~~ni~~ 141 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGT-NQLV-WK---LRQD----DRVRSMEQYNFRY 141 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSS-SCSC-HH---HHTC----TTEEEECSCCGGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCH-HHHH-HH---HHhC----cccceecccCcee
Confidence 345566655444567899999999 99998888886 89999999952 2221 21 1111 2444443 34445
Q ss_pred ccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 470 LTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.++++...+|++++...|...+.+|+ .+.+.|+|||.++
T Consensus 142 l~~~~l~~~~fD~v~~d~sf~sl~~vL~-----------e~~rvLkpGG~lv 182 (291)
T 3hp7_A 142 AEPVDFTEGLPSFASIDVSFISLNLILP-----------ALAKILVDGGQVV 182 (291)
T ss_dssp CCGGGCTTCCCSEEEECCSSSCGGGTHH-----------HHHHHSCTTCEEE
T ss_pred cchhhCCCCCCCEEEEEeeHhhHHHHHH-----------HHHHHcCcCCEEE
Confidence 5555554344899998764432222222 1223699999764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.9e-05 Score=78.77 Aligned_cols=102 Identities=7% Similarity=-0.001 Sum_probs=70.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++..+|+.| .+|+++|. ++.+.+.+++.+..++.. ++|+++.++.+++.. .++.|+|
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~----~~~fD~v 136 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE--RFVVGLDI--SESALAKANETYGSSPKA-EYFSFVKEDVFTWRP----TELFDLI 136 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT--EEEEEECS--CHHHHHHHHHHHTTSGGG-GGEEEECCCTTTCCC----SSCEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC--CeEEEEEC--CHHHHHHHHHHhhccCCC-cceEEEECchhcCCC----CCCeeEE
Confidence 44589999999 98888888874 57999999 777777888888877776 789999998776542 4589999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..+. .++.+... -.-..+.+.|+|||.++
T Consensus 137 ~~~~~l~----~~~~~~~~--~~l~~~~~~LkpgG~l~ 168 (235)
T 3lcc_A 137 FDYVFFC----AIEPEMRP--AWAKSMYELLKPDGELI 168 (235)
T ss_dssp EEESSTT----TSCGGGHH--HHHHHHHHHEEEEEEEE
T ss_pred EEChhhh----cCCHHHHH--HHHHHHHHHCCCCcEEE
Confidence 9853222 12212221 11122234799999764
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.4e-05 Score=78.06 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
+.+.|.+.+ .++..|||+||| |.++..+++.| ..+|+++|. ++.+.+.+++..+. . .+|+++.+..+++.
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~~D~--s~~~~~~a~~~~~~--~--~~i~~~~~d~~~~~ 102 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGG-FPNVTSVDY--SSVVVAAMQACYAH--V--PQLRWETMDVRKLD 102 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTT-CCCEEEEES--CHHHHHHHHHHTTT--C--TTCEEEECCTTSCC
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcC-CCcEEEEeC--CHHHHHHHHHhccc--C--CCcEEEEcchhcCC
Confidence 455555544 356789999999 99999888986 669999999 67666666665543 2 47888888766653
Q ss_pred ccccCCccccEEEccc
Q 044245 472 MDDTQQKKVDLLIGEP 487 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~ 487 (694)
++.+++|+|++-+
T Consensus 103 ---~~~~~fD~v~~~~ 115 (215)
T 2pxx_A 103 ---FPSASFDVVLEKG 115 (215)
T ss_dssp ---SCSSCEEEEEEES
T ss_pred ---CCCCcccEEEECc
Confidence 3357899999864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.8e-05 Score=76.56 Aligned_cols=107 Identities=15% Similarity=0.009 Sum_probs=69.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
+|.+.....+++.|||+||| |.++..+++.| +.+|+++|. ++.+.+.+++.... .+++++.+..+++.
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~--- 102 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDL--SEKMLARARAAGPD-----TGITYERADLDKLH--- 102 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHTSCS-----SSEEEEECCGGGCC---
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcC--CHHHHHHHHHhccc-----CCceEEEcChhhcc---
Confidence 45666655577899999999 98888888885 679999999 66555555543332 46888888766543
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.++.|+|++-..+.. ++ +... .. ..+.+.|+|||.++
T Consensus 103 ~~~~~fD~v~~~~~l~~----~~-~~~~--~l-~~~~~~L~pgG~l~ 141 (243)
T 3bkw_A 103 LPQDSFDLAYSSLALHY----VE-DVAR--LF-RTVHQALSPGGHFV 141 (243)
T ss_dssp CCTTCEEEEEEESCGGG----CS-CHHH--HH-HHHHHHEEEEEEEE
T ss_pred CCCCCceEEEEeccccc----cc-hHHH--HH-HHHHHhcCcCcEEE
Confidence 33578999998642111 11 1111 11 12234699999765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.9e-05 Score=77.42 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=69.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
+++.|||+||| |..++..|++-+ ..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+... .+ .+ +|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~-~~-fD~ 129 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDP--DRDNVEHARRMLHDNGLI-DRVELQVGDPLGIAA-GQ-RD-IDI 129 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEES--CHHHHHHHHHHHHHHSGG-GGEEEEESCHHHHHT-TC-CS-EEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHCCCC-ceEEEEEecHHHHhc-cC-CC-CCE
Confidence 45789999999 988888887621 369999999 777777888888889997 899999997765421 22 25 999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++-.- ... ... +.+ ...++|+|||.++
T Consensus 130 v~~~~~------~~~--~~~--~l~-~~~~~LkpgG~lv 157 (210)
T 3c3p_A 130 LFMDCD------VFN--GAD--VLE-RMNRCLAKNALLI 157 (210)
T ss_dssp EEEETT------TSC--HHH--HHH-HHGGGEEEEEEEE
T ss_pred EEEcCC------hhh--hHH--HHH-HHHHhcCCCeEEE
Confidence 987631 001 011 111 2235799999765
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.4e-05 Score=78.05 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=65.3
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC----------cccccEEEeecccccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC----------FSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~----------l~~~~i~vi~~~~~~~~~ 472 (694)
.++..|||+||| |.++...|+.| . +|++++. |+.+.+.|++..+.+. ....+|+++.++.+++..
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g-~-~V~gvD~--S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 96 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQG-Y-HVVGAEL--SEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 96 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHC-C-EEEEEEE--CHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCC-C-eEEEEeC--CHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc
Confidence 356789999999 98888888886 4 8999999 6766566655433210 001478899887766543
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCce
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~ 519 (694)
.+ .++.|+|++-..+. .++.+... -+. ..+.+.|||||+
T Consensus 97 ~~--~~~fD~v~~~~~l~----~l~~~~~~-~~l-~~~~r~LkpgG~ 135 (203)
T 1pjz_A 97 RD--IGHCAAFYDRAAMI----ALPADMRE-RYV-QHLEALMPQACS 135 (203)
T ss_dssp HH--HHSEEEEEEESCGG----GSCHHHHH-HHH-HHHHHHSCSEEE
T ss_pred cc--CCCEEEEEECcchh----hCCHHHHH-HHH-HHHHHHcCCCcE
Confidence 21 15799999864222 23312110 011 223457999997
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.2e-05 Score=85.68 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
-|+.++. . .++..|||+||| |.+++.+|+. +.+|+++|. ++.+.+.|++.++.||+ + ++++.++.+++
T Consensus 281 l~~~~~~--~--~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~--s~~ai~~A~~n~~~ngl--~-v~~~~~d~~~~ 349 (425)
T 2jjq_A 281 LVRKVSE--L--VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDS--NEFAIEMARRNVEINNV--D-AEFEVASDREV 349 (425)
T ss_dssp HHHHHHH--H--CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEES--CHHHHHHHHHHHHHHTC--C-EEEEECCTTTC
T ss_pred HHHHhhc--c--CCCCEEEEeeccchHHHHHHHHc--CCEEEEEEC--CHHHHHHHHHHHHHcCC--c-EEEEECChHHc
Confidence 3444544 3 356789999999 9999999986 469999999 77777888999999998 5 99999987765
Q ss_pred cccccCCccccEEEcccccc
Q 044245 471 TMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~ 490 (694)
. +.+.|+||+.|-+.
T Consensus 350 ~-----~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 350 S-----VKGFDTVIVDPPRA 364 (425)
T ss_dssp C-----CTTCSEEEECCCTT
T ss_pred C-----ccCCCEEEEcCCcc
Confidence 3 23799999987443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=79.05 Aligned_cols=103 Identities=12% Similarity=-0.127 Sum_probs=69.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++...++.+ ..+|+++|. ++.+.+.+++.+..++. .+++++.+..+++.. +.++.|+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~---~~~~fD~v 150 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDI--TEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTP---EPDSYDVI 150 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEES--CHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCC---CSSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeC--CHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCC---CCCCEEEE
Confidence 46799999999 99988888876 679999999 67666777777777653 579999887665542 24579999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-.... .++-..+.- +. ..+.+.|+|||.++
T Consensus 151 ~~~~~l~----~~~~~~~~~-~l-~~~~~~LkpgG~l~ 182 (241)
T 2ex4_A 151 WIQWVIG----HLTDQHLAE-FL-RRCKGSLRPNGIIV 182 (241)
T ss_dssp EEESCGG----GSCHHHHHH-HH-HHHHHHEEEEEEEE
T ss_pred EEcchhh----hCCHHHHHH-HH-HHHHHhcCCCeEEE
Confidence 9863211 122011110 11 12234799999665
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-05 Score=77.68 Aligned_cols=111 Identities=13% Similarity=-0.013 Sum_probs=65.4
Q ss_pred HHHHHHHhc---CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 394 VMAMRNALQ---GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 394 ~~Ai~~~~~---~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
..+|.+.+. ..+|..|||+||| |.++..+|+. |...+|||+|. ++.+.+-+.+.++.+ .+|+++.++.+
T Consensus 62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~--s~~~l~~l~~~a~~r----~nv~~i~~Da~ 135 (232)
T 3id6_C 62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF--SPRVVRELLLVAQRR----PNIFPLLADAR 135 (232)
T ss_dssp HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEEC--CHHHHHHHHHHHHHC----TTEEEEECCTT
T ss_pred HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEEC--cHHHHHHHHHHhhhc----CCeEEEEcccc
Confidence 344544433 4578899999999 8777666654 43569999999 554321122223221 35888888766
Q ss_pred ccccc-ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 469 CLTMD-DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 469 ~~~~~-~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..... .+ .+++|+|++.. . .++..- .......++|||||+++
T Consensus 136 ~~~~~~~~-~~~~D~I~~d~------a-~~~~~~---il~~~~~~~LkpGG~lv 178 (232)
T 3id6_C 136 FPQSYKSV-VENVDVLYVDI------A-QPDQTD---IAIYNAKFFLKVNGDML 178 (232)
T ss_dssp CGGGTTTT-CCCEEEEEECC------C-CTTHHH---HHHHHHHHHEEEEEEEE
T ss_pred cchhhhcc-ccceEEEEecC------C-ChhHHH---HHHHHHHHhCCCCeEEE
Confidence 54321 22 46899999984 1 232211 11122233699999765
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-05 Score=81.20 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHc------CCCCCCccCCCccEEEEEcCCH---H-----------HHHHHHHHHHHc--
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAM------GSSDSTTSLNTKGMVTACESYL---P-----------MVKLMKKVLHVN-- 123 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g------~~~~~~~~~~~~~~V~avE~s~---~-----------~~~~A~~~~~~n-- 123 (694)
+..+|||||+|+|+..+.++++. .+.. .....+++++|..+ + +.+.|+++++.-
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~----~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~ 135 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQA----QLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPM 135 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTS----SCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCC
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCC----CcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccc
Confidence 34799999999999888877653 2100 00025899999886 3 344666666541
Q ss_pred --------CCC---CcEEEEeccccccccccCCCC----CccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 124 --------GMG---RNIKVINKRSDELEVGVDIDS----RADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 124 --------gl~---~~I~vi~~~~~~l~~~~~l~~----~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+. .+++++.+|..+... .++. +||+|+.+.+......+-..+.++..+.++|+|||+++-
T Consensus 136 ~~~g~~r~~~~~~~~~l~l~~GDa~~~l~--~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 136 PLPGCHRLLLDEGRVTLDLWFGDINELIS--QLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SCSEEEEEEEC--CEEEEEEESCHHHHGG--GSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cccchhheeccCCceEEEEEECcHHHHHh--hcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 121 378899999887421 2222 799999875442222222245677778889999999883
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-05 Score=80.89 Aligned_cols=119 Identities=11% Similarity=0.040 Sum_probs=75.1
Q ss_pred HHHHHHHHH--hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-Cc-------ccccE
Q 044245 392 SMVMAMRNA--LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-CF-------SIDRV 460 (694)
Q Consensus 392 ~y~~Ai~~~--~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-~l-------~~~~i 460 (694)
.|++++... .....++.|||||+| |.++..+++. ++.+|+++|. ++.+.+++++.++.| ++ ..++|
T Consensus 60 ~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDi--d~~~i~~ar~~~~~~~~l~~~~~~~~~~~v 136 (281)
T 1mjf_A 60 SYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEI--DEDVIMVSKDLIKIDNGLLEAMLNGKHEKA 136 (281)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEES--CHHHHHHHHHHTCTTTTHHHHHHTTCCSSE
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEEC--CHHHHHHHHHHHhhccccccccccCCCCcE
Confidence 355555532 112346789999999 9999999988 4889999999 776667777766222 44 22689
Q ss_pred EEeecccccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEcc
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+++.++..+.-. . .++.|+|++.+++.. +. + ..+ .| + + ...+.|+|||+++=.
T Consensus 137 ~~~~~D~~~~l~-~--~~~fD~Ii~d~~~~~--~~-~-~~l~~~~~-l-~-~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 137 KLTIGDGFEFIK-N--NRGFDVIIADSTDPV--GP-A-KVLFSEEF-Y-R-YVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEESCHHHHHH-H--CCCEEEEEEECCCCC---------TTSHHH-H-H-HHHHHEEEEEEEEEE
T ss_pred EEEECchHHHhc-c--cCCeeEEEECCCCCC--Cc-c-hhhhHHHH-H-H-HHHHhcCCCcEEEEE
Confidence 999987554311 1 367999999865321 11 1 111 11 1 1 123469999987544
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.1e-05 Score=83.12 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=61.7
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc--c--------
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD--D-------- 474 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~--~-------- 474 (694)
++.|||++|| |.+++.+|+. +++|+++|. ++.+.+.|+++++.||+ ++++++.++++++... .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~--~~~ai~~a~~n~~~ng~--~~v~~~~~d~~~~~~~~~~~~~~~~l~ 287 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEI--AKPSVAAAQYNIAANHI--DNVQIIRMAAEEFTQAMNGVREFNRLQ 287 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECC--CHHHHHHHHHHHHHTTC--CSEEEECCCSHHHHHHHSSCCCCTTGG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEEC--CHHHHHHHHHHHHHcCC--CceEEEECCHHHHHHHHhhcccccccc
Confidence 5679999999 9999999984 689999999 78788889999999999 4799999988765321 0
Q ss_pred ---cCCccccEEEcccc
Q 044245 475 ---TQQKKVDLLIGEPY 488 (694)
Q Consensus 475 ---l~~~~vDvivsE~~ 488 (694)
+...+.|+||..|=
T Consensus 288 ~~~~~~~~fD~Vv~dPP 304 (369)
T 3bt7_A 288 GIDLKSYQCETIFVDPP 304 (369)
T ss_dssp GSCGGGCCEEEEEECCC
T ss_pred ccccccCCCCEEEECcC
Confidence 11137899999863
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.7e-05 Score=86.48 Aligned_cols=90 Identities=19% Similarity=0.107 Sum_probs=62.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCC---CCCcc--CCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSS---DSTTS--LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~---~~~~~--~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+|||.+||||.+.+.+++..... ..+.. .....+++|+|+++.++..|+.++..+|+..+|.+.++|....+.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 489999999998888776542100 00000 000248999999999999999999999987666667777654321
Q ss_pred cCCCCCccEEEEccccc
Q 044245 143 VDIDSRADILVSEILDS 159 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~ 159 (694)
....+||+||+||...
T Consensus 325 -~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 325 -HPDLRADFVMTNPPFN 340 (544)
T ss_dssp -CTTCCEEEEEECCCSS
T ss_pred -cccccccEEEECCCcC
Confidence 1236899999998664
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.4e-05 Score=75.20 Aligned_cols=103 Identities=11% Similarity=0.077 Sum_probs=67.2
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..++..|||+||| |.++...++.....+|+++|. ++.+.+.+++.++.++ +|+++.++.+++.. +++.|
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~~----~~~fD 111 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDM--SEKMLEIAKNRFRGNL----KVKYIEADYSKYDF----EEKYD 111 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHTCSCT----TEEEEESCTTTCCC----CSCEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHhhccCC----CEEEEeCchhccCC----CCCce
Confidence 3456899999999 888877777632468999999 6666666666665543 69999987765543 27899
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++-..+. .++..... -.-..+.+.|+|||.++
T Consensus 112 ~v~~~~~l~----~~~~~~~~--~~l~~~~~~LkpgG~l~ 145 (234)
T 3dtn_A 112 MVVSALSIH----HLEDEDKK--ELYKRSYSILKESGIFI 145 (234)
T ss_dssp EEEEESCGG----GSCHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred EEEEeCccc----cCCHHHHH--HHHHHHHHhcCCCcEEE
Confidence 999864211 12211110 01112234799999776
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.1e-05 Score=79.50 Aligned_cols=79 Identities=5% Similarity=0.013 Sum_probs=60.6
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc-----CC
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT-----QQ 477 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l-----~~ 477 (694)
+++.||||||| |..++..|++ ....+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...++-. .+ ..
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~--s~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~-~l~~~~~~~ 154 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDI--NKENYELGLPVIKKAGVD-HKIDFREGPALPVLD-EMIKDEKNH 154 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEES--CCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHH-HHHHSGGGT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHH-HHHhccCCC
Confidence 56789999999 9888888886 21258999999 666667889999999997 899999998765421 11 13
Q ss_pred ccccEEEccc
Q 044245 478 KKVDLLIGEP 487 (694)
Q Consensus 478 ~~vDvivsE~ 487 (694)
++.|+|++..
T Consensus 155 ~~fD~V~~d~ 164 (247)
T 1sui_A 155 GSYDFIFVDA 164 (247)
T ss_dssp TCBSEEEECS
T ss_pred CCEEEEEEcC
Confidence 6799999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.84 E-value=6.8e-05 Score=77.44 Aligned_cols=83 Identities=7% Similarity=0.003 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.|.+.....++..||||||| |.++...++.| .+|+++|. ++.+.+.+++.+..+++. ++++++.++..++..
T Consensus 18 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~--~~~~~~~a~~~~~~~~~~-~~v~~~~~D~~~~~~- 91 (285)
T 1zq9_A 18 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACEL--DPRLVAELHKRVQGTPVA-SKLQVLVGDVLKTDL- 91 (285)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEES--CHHHHHHHHHHHTTSTTG-GGEEEEESCTTTSCC-
T ss_pred HHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEEC--CHHHHHHHHHHHHhcCCC-CceEEEEcceecccc-
Confidence 344555555567899999999 98888888875 58999999 666667788888888876 789999998765532
Q ss_pred ccCCccccEEEccc
Q 044245 474 DTQQKKVDLLIGEP 487 (694)
Q Consensus 474 ~l~~~~vDvivsE~ 487 (694)
...|+|++-+
T Consensus 92 ----~~fD~vv~nl 101 (285)
T 1zq9_A 92 ----PFFDTCVANL 101 (285)
T ss_dssp ----CCCSEEEEEC
T ss_pred ----hhhcEEEEec
Confidence 3689999973
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6e-05 Score=75.15 Aligned_cols=106 Identities=5% Similarity=-0.093 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+..+.......++..||||||| |.++...++.| . +|+++|. ++.+.+.+++... .+++++.+..+++.
T Consensus 31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~v~gvD~--s~~~~~~a~~~~~------~~v~~~~~d~~~~~- 99 (250)
T 2p7i_A 31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF-N-DITCVEA--SEEAISHAQGRLK------DGITYIHSRFEDAQ- 99 (250)
T ss_dssp HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC-S-CEEEEES--CHHHHHHHHHHSC------SCEEEEESCGGGCC-
T ss_pred HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC-C-cEEEEeC--CHHHHHHHHHhhh------CCeEEEEccHHHcC-
Confidence 3333333333467789999999 99999998886 4 8999999 6665555554332 26889988776652
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcc-cccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLD-PVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~-~~L~p~g~i~ 521 (694)
+.++.|+|++.-... .+-++. . ..+ .+. +.|||||.++
T Consensus 100 ---~~~~fD~v~~~~~l~---~~~~~~--~--~l~-~~~~~~LkpgG~l~ 138 (250)
T 2p7i_A 100 ---LPRRYDNIVLTHVLE---HIDDPV--A--LLK-RINDDWLAEGGRLF 138 (250)
T ss_dssp ---CSSCEEEEEEESCGG---GCSSHH--H--HHH-HHHHTTEEEEEEEE
T ss_pred ---cCCcccEEEEhhHHH---hhcCHH--H--HHH-HHHHHhcCCCCEEE
Confidence 357899999964211 111211 1 122 223 5799999654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.83 E-value=3.3e-05 Score=74.85 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++ .|||+||| |.++..+++.| + +|+++|. ++.+.+.+++..+.++. +++++.+..+++. ++.++.|+|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---~~~~~fD~v 98 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLG-Y-EVTAVDQ--SSVGLAKAKQLAQEKGV---KITTVQSNLADFD---IVADAWEGI 98 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTT-C-EEEEECS--SHHHHHHHHHHHHHHTC---CEEEECCBTTTBS---CCTTTCSEE
T ss_pred CC-CEEEECCCCCHhHHHHHhCC-C-eEEEEEC--CHHHHHHHHHHHHhcCC---ceEEEEcChhhcC---CCcCCccEE
Confidence 45 89999999 99888888885 4 9999999 67666677777766655 5888888766553 334689999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++- + . .++.+... -.-..+.+.|+|||.++
T Consensus 99 ~~~-~-~----~~~~~~~~--~~l~~~~~~L~pgG~l~ 128 (202)
T 2kw5_A 99 VSI-F-C----HLPSSLRQ--QLYPKVYQGLKPGGVFI 128 (202)
T ss_dssp EEE-C-C----CCCHHHHH--HHHHHHHTTCCSSEEEE
T ss_pred EEE-h-h----cCCHHHHH--HHHHHHHHhcCCCcEEE
Confidence 983 1 1 11211111 11122345799999664
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=89.08 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHH--HHHHHHcCCCC---cEEEEeccccccc
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLM--KKVLHVNGMGR---NIKVINKRSDELE 140 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A--~~~~~~ngl~~---~I~vi~~~~~~l~ 140 (694)
++.+|||.|||||.+.+.+++..... ...+++|+|+++.+++.| +.++..|++.. ...+...+..+..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei-------~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~ 393 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNV-------MPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN 393 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTC-------CGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC
T ss_pred CCCEEEECCCCccHHHHHHHHHhccc-------CCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc
Confidence 46799999999999999998875310 125799999999999999 66655544322 2345555554432
Q ss_pred cccCCCCCccEEEEccccc
Q 044245 141 VGVDIDSRADILVSEILDS 159 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~ 159 (694)
. ...++||+||+||...
T Consensus 394 ~--~~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 394 P--EDFANVSVVVMNPPYV 410 (878)
T ss_dssp G--GGGTTEEEEEECCBCC
T ss_pred c--cccCCCCEEEECCCcc
Confidence 1 1236899999999763
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.82 E-value=4.8e-05 Score=74.80 Aligned_cols=101 Identities=10% Similarity=0.009 Sum_probs=59.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-cccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-DDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~~l~~~~vD 481 (694)
.++..|||+||| |.++..+|+.+|..+|+++|. ++.+.+.+.+.++. . .+|+++.++.++... ..+ .+++|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~--s~~~l~~~~~~a~~--~--~~v~~~~~d~~~~~~~~~~-~~~fD 128 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEY--SAKPFEKLLELVRE--R--NNIIPLLFDASKPWKYSGI-VEKVD 128 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECC--CHHHHHHHHHHHHH--C--SSEEEECSCTTCGGGTTTT-CCCEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEEC--CHHHHHHHHHHHhc--C--CCeEEEEcCCCCchhhccc-cccee
Confidence 367799999999 888776666533579999999 66433223333332 1 357777776554321 122 36899
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++.. . .+ ..... ..+ ...++|||||+++
T Consensus 129 ~V~~~~--~-----~~-~~~~~-~l~-~~~r~LkpgG~l~ 158 (210)
T 1nt2_A 129 LIYQDI--A-----QK-NQIEI-LKA-NAEFFLKEKGEVV 158 (210)
T ss_dssp EEEECC--C-----ST-THHHH-HHH-HHHHHEEEEEEEE
T ss_pred EEEEec--c-----Ch-hHHHH-HHH-HHHHHhCCCCEEE
Confidence 999873 1 12 11110 112 2234799999764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=85.48 Aligned_cols=74 Identities=8% Similarity=-0.085 Sum_probs=58.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+|+.|||+||| |.+++.+|+.| |+ |+++|. ++.+.+.+++.++.||++ +++. .+++.+.-. .+. ++.|+|
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g-a~-V~avDi--s~~al~~a~~n~~~ng~~-~~~~--~~D~~~~l~-~~~-~~fD~I 284 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG-AY-ALAVDK--DLEALGVLDQAALRLGLR-VDIR--HGEALPTLR-GLE-GPFHHV 284 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT-CE-EEEEES--CHHHHHHHHHHHHHHTCC-CEEE--ESCHHHHHH-TCC-CCEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcC-Ce-EEEEEC--CHHHHHHHHHHHHHhCCC-CcEE--EccHHHHHH-Hhc-CCCCEE
Confidence 47899999999 99999999985 77 999999 888888999999999997 5544 665544321 222 349999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
|+.|
T Consensus 285 i~dp 288 (393)
T 4dmg_A 285 LLDP 288 (393)
T ss_dssp EECC
T ss_pred EECC
Confidence 9985
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.8e-05 Score=75.43 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.+.+.....++..|||+||| |.++..+++.| .+|+++|. ++.+.+.+++.++.++ +++++.++.++...
T Consensus 61 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~--~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~-- 130 (231)
T 1vbf_A 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEI--NEKMYNYASKLLSYYN----NIKLILGDGTLGYE-- 130 (231)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEES--CHHHHHHHHHHHTTCS----SEEEEESCGGGCCG--
T ss_pred HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeC--CHHHHHHHHHHHhhcC----CeEEEECCcccccc--
Confidence 34444444567899999999 99999999985 79999999 6766667777776654 58898887654111
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
..++.|+|++-.
T Consensus 131 -~~~~fD~v~~~~ 142 (231)
T 1vbf_A 131 -EEKPYDRVVVWA 142 (231)
T ss_dssp -GGCCEEEEEESS
T ss_pred -cCCCccEEEECC
Confidence 236799999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.9e-05 Score=74.64 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCC-----CceEEEcCCCcChhHHHHHHHHhccCCc----ccccEEEeecccccccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSK-----TAHVLSLLPGLGDKGAQYLRTVADPNCF----SIDRVEILQKGKKCLTM 472 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~-----a~~V~ave~~~~~~~~~~~~~i~~~N~l----~~~~i~vi~~~~~~~~~ 472 (694)
..++..|||+||| |.++..+|+.++ ..+|+++|. ++.+.+.+++.++.+++ . ++|+++.++..+...
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~ 154 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLER--VKDLVNFSLENIKRDKPELLKI-DNFKIIHKNIYQVNE 154 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEES--CHHHHHHHHHHHHHHCGGGGSS-TTEEEEECCGGGCCH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeC--CHHHHHHHHHHHHHcCcccccc-CCEEEEECChHhccc
Confidence 3467899999999 988888888742 259999999 77667788888888773 3 589999887654320
Q ss_pred cc-cCCccccEEEccc
Q 044245 473 DD-TQQKKVDLLIGEP 487 (694)
Q Consensus 473 ~~-l~~~~vDvivsE~ 487 (694)
.. ...++.|+|++-.
T Consensus 155 ~~~~~~~~fD~I~~~~ 170 (227)
T 2pbf_A 155 EEKKELGLFDAIHVGA 170 (227)
T ss_dssp HHHHHHCCEEEEEECS
T ss_pred ccCccCCCcCEEEECC
Confidence 00 1235789998864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-05 Score=75.60 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC---Cccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ---QKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~---~~~v 480 (694)
++..|||+||| |.+++.+|+.....+|+++|. ++.+.+.|++.++.|+++ ++|++++++.++.-...++ .++.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEV--DDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLMDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHHHHHcCCC-ccEEEEEcchhhhhhhhhhcccCCcc
Confidence 45689999999 876665555421479999999 777778899999999997 8899999976652111232 1579
Q ss_pred cEEEccc-ccc
Q 044245 481 DLLIGEP-YYF 490 (694)
Q Consensus 481 DvivsE~-~~~ 490 (694)
|+|++.| |+.
T Consensus 142 D~i~~npp~~~ 152 (254)
T 2h00_A 142 DFCMCNPPFFA 152 (254)
T ss_dssp SEEEECCCCC-
T ss_pred cEEEECCCCcc
Confidence 9999984 543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.80 E-value=7.3e-05 Score=74.46 Aligned_cols=116 Identities=9% Similarity=-0.073 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCC--CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 390 RLSMVMAMRNALQGR--VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~--~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
.+.+.+.|.+.+... +++.|||+||| |.++...++.| .+|+++|. ++.+.+.+++....+++ +++++.+.
T Consensus 20 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~--s~~~~~~a~~~~~~~~~---~~~~~~~d 92 (246)
T 1y8c_A 20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDL--SQEMLSEAENKFRSQGL---KPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECS--CHHHHHHHHHHHHHTTC---CCEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC--CcEEEEEC--CHHHHHHHHHHHhhcCC---CeEEEecc
Confidence 344555555555433 66899999999 98888888885 47999999 66666677776666654 58888887
Q ss_pred cccccccccCCccccEEEccc-cccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.+++. + +++.|+|++-. .+. .+...+.+. -.-..+.+.|+|||.++
T Consensus 93 ~~~~~---~-~~~fD~v~~~~~~l~---~~~~~~~~~--~~l~~~~~~L~pgG~l~ 139 (246)
T 1y8c_A 93 ISNLN---I-NRKFDLITCCLDSTN---YIIDSDDLK--KYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp GGGCC---C-SCCEEEEEECTTGGG---GCCSHHHHH--HHHHHHHTTEEEEEEEE
T ss_pred cccCC---c-cCCceEEEEcCcccc---ccCCHHHHH--HHHHHHHHhcCCCcEEE
Confidence 66543 2 26899999853 211 111101111 11122345799999765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=79.59 Aligned_cols=109 Identities=11% Similarity=0.032 Sum_probs=69.1
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC----------------------------
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC---------------------------- 454 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~---------------------------- 454 (694)
.+++.|||+||| |.++..+|+.| +.+|++++. ++.+.+.+++.++.++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACES-FTEIIVSDY--TDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGT-EEEEEEEES--CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcc-cCeEEEecC--CHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 466789999999 99999988886 679999999 6666667777666543
Q ss_pred cccccE-EEeecccccccc-cccCCccccEEEccccccCCccccCc-chhhHHHHHhhcccccCCCceEE
Q 044245 455 FSIDRV-EILQKGKKCLTM-DDTQQKKVDLLIGEPYYFGNDGMLPW-QNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 455 l~~~~i-~vi~~~~~~~~~-~~l~~~~vDvivsE~~~~~~e~~l~w-~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+. ++| +++.+..++... .....+++|+|++-.... .+.++ ..+. -.-..+.++|+|||.++
T Consensus 132 l~-~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~---~~~~~~~~~~--~~l~~~~~~LkpgG~li 195 (265)
T 2i62_A 132 LR-RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD---AACPDLPAYR--TALRNLGSLLKPGGFLV 195 (265)
T ss_dssp HH-HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH---HHCSSHHHHH--HHHHHHHTTEEEEEEEE
T ss_pred hh-hhheeEEEeeeccCCCCCccccCCccEEEEhhhhh---hhcCChHHHH--HHHHHHHhhCCCCcEEE
Confidence 11 248 888887665432 112226899999853111 11111 1111 11122345799999765
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.4e-05 Score=78.13 Aligned_cols=79 Identities=4% Similarity=0.001 Sum_probs=60.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccC--C--c
Q 044245 405 VQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQ--Q--K 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~--~--~ 478 (694)
+++.|||+||| |..++..|++-+ ..+|+++|. ++.+.+.+++.++.+|+. ++|+++.+...+.-. .++ . +
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~l~-~l~~~~~~~ 147 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQ--DPNATAIAKKYWQKAGVA-EKISLRLGPALATLE-QLTQGKPLP 147 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHH-HHHTSSSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-HHHhcCCCC
Confidence 46789999999 998888888621 359999999 777777888888889997 899999987654311 121 1 6
Q ss_pred cccEEEccc
Q 044245 479 KVDLLIGEP 487 (694)
Q Consensus 479 ~vDvivsE~ 487 (694)
++|+|++..
T Consensus 148 ~fD~V~~d~ 156 (232)
T 3cbg_A 148 EFDLIFIDA 156 (232)
T ss_dssp CEEEEEECS
T ss_pred CcCEEEECC
Confidence 799999764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=74.73 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=55.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+||| |.++..+++.| + +|+++|. ++.+.+.+++.++.+++ +|+++.+..+++.. +++.|+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~v~gvD~--s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~----~~~fD~ 108 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERG-Y-EVVGLDL--HEEMLRVARRKAKERNL---KIEFLQGDVLEIAF----KNEFDA 108 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHHHHTTC---CCEEEESCGGGCCC----CSCEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCC-C-eEEEEEC--CHHHHHHHHHHHHhcCC---ceEEEECChhhccc----CCCccE
Confidence 356799999999 99998888885 4 8999999 67666677777777665 48888887665432 367999
Q ss_pred EEcc
Q 044245 483 LIGE 486 (694)
Q Consensus 483 ivsE 486 (694)
|++-
T Consensus 109 v~~~ 112 (252)
T 1wzn_A 109 VTMF 112 (252)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9863
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=82.16 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcCh-------hHHHHHHHHhccCCcccccEE
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGD-------KGAQYLRTVADPNCFSIDRVE 461 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~-------~~~~~~~~i~~~N~l~~~~i~ 461 (694)
.+.+.+++ ...++..|||+||| |.+++.+|+.| .+|+++|. ++ .+.+.+++.++.||+. ++|+
T Consensus 72 ~~~l~~a~----~~~~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~--s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~ 142 (258)
T 2r6z_A 72 GELIAKAV----NHTAHPTVWDATAGLGRDSFVLASLG--LTVTAFEQ--HPAVACLLSDGIRRALLNPETQDTA-ARIN 142 (258)
T ss_dssp -CHHHHHT----TGGGCCCEEETTCTTCHHHHHHHHTT--CCEEEEEC--CHHHHHHHHHHHHHHHHSHHHHHHH-TTEE
T ss_pred hHHHHHHh----CcCCcCeEEEeeCccCHHHHHHHHhC--CEEEEEEC--ChhhhHHHHHHHHHHHhHHHhhCCc-cCeE
Confidence 34445555 22346789999999 99999999985 48999999 77 5566677778888987 7899
Q ss_pred EeecccccccccccCC--ccccEEEcccccc
Q 044245 462 ILQKGKKCLTMDDTQQ--KKVDLLIGEPYYF 490 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~--~~vDvivsE~~~~ 490 (694)
+++++.+++.. .++. +.+|+|++.|+|.
T Consensus 143 ~~~~d~~~~l~-~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 143 LHFGNAAEQMP-ALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp EEESCHHHHHH-HHHHHHCCCSEEEECCCC-
T ss_pred EEECCHHHHHH-hhhccCCCccEEEECCCCC
Confidence 99998776421 1212 5799999998664
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.3e-05 Score=80.05 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc--ccccEEEeeccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF--SIDRVEILQKGKKCLT 471 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l--~~~~i~vi~~~~~~~~ 471 (694)
+.+.+.... ++..||||||| |.++..+++.| .+|+++|. ++.+.+.+++.+..+++ . ++|+++.++.+++.
T Consensus 73 ~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~--s~~~~~~a~~~~~~~~~~~~-~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 73 REFATRTGP-VSGPVLELAAGMGRLTFPFLDLG--WEVTALEL--STSVLAAFRKRLAEAPADVR-DRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTT--CCEEEEES--CHHHHHHHHHHHHTSCHHHH-TTEEEEECBTTBCC
T ss_pred HHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcC--CeEEEEEC--CHHHHHHHHHHHhhcccccc-cceEEEeCchhcCC
Confidence 334444433 34589999999 98888888885 57999999 67666778877777764 2 57999999877654
Q ss_pred ccccCCccccEEEcc
Q 044245 472 MDDTQQKKVDLLIGE 486 (694)
Q Consensus 472 ~~~l~~~~vDvivsE 486 (694)
. +++.|+||+-
T Consensus 147 ~----~~~fD~v~~~ 157 (299)
T 3g2m_A 147 L----DKRFGTVVIS 157 (299)
T ss_dssp C----SCCEEEEEEC
T ss_pred c----CCCcCEEEEC
Confidence 3 4789988853
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.77 E-value=7.3e-05 Score=78.36 Aligned_cols=82 Identities=7% Similarity=-0.027 Sum_probs=62.3
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||+||| |..+..+|+. ++..+|+++|. ++.+.+.+++.++.+|+. +|+++.++.+++.. . .++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~--s~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~~~--~-~~~ 187 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDV--DENRLRETRLNLSRLGVL--NVILFHSSSLHIGE--L-NVE 187 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECS--CHHHHHHHHHHHHHHTCC--SEEEESSCGGGGGG--G-CCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHHHHhCCC--eEEEEECChhhccc--c-ccc
Confidence 34567899999999 8777766664 33579999999 676667888889999985 69999988776543 2 367
Q ss_pred ccEEEcccccc
Q 044245 480 VDLLIGEPYYF 490 (694)
Q Consensus 480 vDvivsE~~~~ 490 (694)
+|+|++.+-+.
T Consensus 188 fD~Il~d~Pcs 198 (315)
T 1ixk_A 188 FDKILLDAPCT 198 (315)
T ss_dssp EEEEEEECCTT
T ss_pred CCEEEEeCCCC
Confidence 99999985443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.76 E-value=8e-05 Score=73.30 Aligned_cols=76 Identities=9% Similarity=-0.028 Sum_probs=57.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++...|+.....+|+++|. ++.+.+.|++.++.+|+. +|++++++..++.. .++...+|.|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~--s~~~l~~a~~~~~~~~~~--nv~~~~~d~~~l~~-~~~~~~~d~v 112 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIEL--FKSVIVTAVQKVKDSEAQ--NVKLLNIDADTLTD-VFEPGEVKRV 112 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECS--CHHHHHHHHHHHHHSCCS--SEEEECCCGGGHHH-HCCTTSCCEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEe--chHHHHHHHHHHHHcCCC--CEEEEeCCHHHHHh-hcCcCCcCEE
Confidence 45789999999 877777666532478999999 776667788888888984 69999998876531 1334568877
Q ss_pred Ec
Q 044245 484 IG 485 (694)
Q Consensus 484 vs 485 (694)
+.
T Consensus 113 ~~ 114 (213)
T 2fca_A 113 YL 114 (213)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.76 E-value=8e-05 Score=76.63 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=75.2
Q ss_pred HHHHHHHHHHh-cCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 391 LSMVMAMRNAL-QGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 391 ~~y~~Ai~~~~-~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
..|...+.+.. ...++..||||||| |.++...|+.-. ..+|+++|. ++.+.+.+++.++.++. +|+++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~---~v~~~~~d~ 81 (284)
T 3gu3_A 7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS--GETLLAEARELFRLLPY---DSEFLEGDA 81 (284)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEES--CHHHHHHHHHHHHSSSS---EEEEEESCT
T ss_pred hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHhcCC---ceEEEEcch
Confidence 34444444443 33467899999999 988888887621 369999999 77666777777766654 699999887
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++.. +++.|+|++-.... .+-++.. ..+ ...+.|+|||.++
T Consensus 82 ~~~~~----~~~fD~v~~~~~l~---~~~~~~~----~l~-~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 82 TEIEL----NDKYDIAICHAFLL---HMTTPET----MLQ-KMIHSVKKGGKII 123 (284)
T ss_dssp TTCCC----SSCEEEEEEESCGG---GCSSHHH----HHH-HHHHTEEEEEEEE
T ss_pred hhcCc----CCCeeEEEECChhh---cCCCHHH----HHH-HHHHHcCCCCEEE
Confidence 76543 36899999975322 1222221 111 1234699999776
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.6e-05 Score=79.95 Aligned_cols=80 Identities=10% Similarity=-0.023 Sum_probs=59.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++.|||||+| |.++..+++..+..+|+++|. ++.+.+++++.+.. +++..++++++.++..+.-. . ..++.|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~-~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEV--DGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-K-FKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-G-CSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-h-CCCCce
Confidence 45789999999 999999888734789999999 77766777776654 45532689999987654321 1 246799
Q ss_pred EEEcccc
Q 044245 482 LLIGEPY 488 (694)
Q Consensus 482 vivsE~~ 488 (694)
+||+.++
T Consensus 166 ~Ii~d~~ 172 (296)
T 1inl_A 166 VIIIDST 172 (296)
T ss_dssp EEEEEC-
T ss_pred EEEEcCC
Confidence 9999754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.8e-05 Score=77.95 Aligned_cols=79 Identities=3% Similarity=-0.058 Sum_probs=60.8
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc-----CC
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT-----QQ 477 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l-----~~ 477 (694)
+++.|||||+| |..++..|++ +...+|+++|. ++...+.+++.++.+|+. ++|+++.+...++-. .+ ..
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~-~l~~~~~~~ 145 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDF--DREAYEIGLPFIRKAGVE-HKINFIESDAMLALD-NLLQGQESE 145 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHH-HHHHSTTCT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-HHHhccCCC
Confidence 56789999999 8888877776 21369999999 777777889999999997 899999997665421 12 13
Q ss_pred ccccEEEccc
Q 044245 478 KKVDLLIGEP 487 (694)
Q Consensus 478 ~~vDvivsE~ 487 (694)
++.|+|+...
T Consensus 146 ~~fD~I~~d~ 155 (237)
T 3c3y_A 146 GSYDFGFVDA 155 (237)
T ss_dssp TCEEEEEECS
T ss_pred CCcCEEEECC
Confidence 6799998763
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.6e-05 Score=70.60 Aligned_cols=84 Identities=8% Similarity=-0.042 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.+.+.....++..|||+||| |.++..+++ + ..+|+++|. ++.+.+.+++.++.||+ ++++++.++.++ .
T Consensus 24 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~-~~~v~~vD~--~~~~~~~a~~~~~~~~~--~~~~~~~~d~~~-~- 95 (183)
T 2yxd_A 24 RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-R-CKFVYAIDY--LDGAIEVTKQNLAKFNI--KNCQIIKGRAED-V- 95 (183)
T ss_dssp HHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-T-SSEEEEEEC--SHHHHHHHHHHHHHTTC--CSEEEEESCHHH-H-
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-c-CCeEEEEeC--CHHHHHHHHHHHHHcCC--CcEEEEECCccc-c-
Confidence 3445555555577899999999 999988888 4 689999999 77777788888889998 479999987654 2
Q ss_pred cccCCccccEEEccc
Q 044245 473 DDTQQKKVDLLIGEP 487 (694)
Q Consensus 473 ~~l~~~~vDvivsE~ 487 (694)
++.++.|+|++-+
T Consensus 96 --~~~~~~D~i~~~~ 108 (183)
T 2yxd_A 96 --LDKLEFNKAFIGG 108 (183)
T ss_dssp --GGGCCCSEEEECS
T ss_pred --ccCCCCcEEEECC
Confidence 2336799999875
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=70.64 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=60.8
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..+++.|||+||| |.+++.+|+.| +++|+++|. ++.+.+.+++.++.|++ +++++.++.+++ +.++|
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~--~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~------~~~~D 114 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEV--DKEAVDVLIENLGEFKG---KFKVFIGDVSEF------NSRVD 114 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHTGGGTT---SEEEEESCGGGC------CCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHHHHHcCC---CEEEEECchHHc------CCCCC
Confidence 3467899999999 99999999986 789999999 77777788888888877 589999876654 24799
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+|++.|
T Consensus 115 ~v~~~~ 120 (207)
T 1wy7_A 115 IVIMNP 120 (207)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999985
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.75 E-value=4.6e-05 Score=80.51 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=65.0
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|...+.... ....++.|||||+| |.++..+++..+..+|+++|. ++.+.+++++.+.. +|+...+|+++.++
T Consensus 105 ~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDi--s~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D 182 (334)
T 1xj5_A 105 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEI--DKMVVDVSKQFFPDVAIGYEDPRVNLVIGD 182 (334)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHhhccccCCCcEEEEECC
Confidence 3555554432 11245789999999 988888888744689999999 77777777776654 35632689999987
Q ss_pred cccccccccCCccccEEEcccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPY 488 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~ 488 (694)
..+.-. .++.++.|+||+.++
T Consensus 183 ~~~~l~-~~~~~~fDlIi~d~~ 203 (334)
T 1xj5_A 183 GVAFLK-NAAEGSYDAVIVDSS 203 (334)
T ss_dssp HHHHHH-TSCTTCEEEEEECCC
T ss_pred HHHHHH-hccCCCccEEEECCC
Confidence 654311 122367999999753
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.7e-05 Score=73.32 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=64.5
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
..++..|||+||| |.++..+++.| .+|+++|. ++.+.+.++ .++. .+++++.+..+++ .+.+++|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~--s~~~~~~a~----~~~~--~~~~~~~~d~~~~----~~~~~~D 109 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLA--DRVTALDG--SAEMIAEAG----RHGL--DNVEFRQQDLFDW----TPDRQWD 109 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHS--SEEEEEES--CHHHHHHHG----GGCC--TTEEEEECCTTSC----CCSSCEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeC--CHHHHHHHH----hcCC--CCeEEEecccccC----CCCCcee
Confidence 3456799999999 99998888885 49999999 665444443 3665 4799999987765 2357899
Q ss_pred EEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 482 LLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 482 vivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++-.... .++...+.- +.+ .+.+.|+|||.++
T Consensus 110 ~v~~~~~l~----~~~~~~~~~-~l~-~~~~~L~pgG~l~ 143 (218)
T 3ou2_A 110 AVFFAHWLA----HVPDDRFEA-FWE-SVRSAVAPGGVVE 143 (218)
T ss_dssp EEEEESCGG----GSCHHHHHH-HHH-HHHHHEEEEEEEE
T ss_pred EEEEechhh----cCCHHHHHH-HHH-HHHHHcCCCeEEE
Confidence 999853111 122111110 122 2234799998654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.74 E-value=4.5e-05 Score=78.23 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=62.2
Q ss_pred cCCCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc-cCCc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD-TQQK 478 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~-l~~~ 478 (694)
...++..|||+|+| |..+...|+ .+++.+|+++|. ++.+.+.+++.++.+|+. +|+++.++.+++.... ...+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~--~~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEI--SKTRTKALKSNINRMGVL--NTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEESCHHHHHHHHHHTTC
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECC--CHHHHHHHHHHHHHhCCC--cEEEEeCChHhcchhhhhccc
Confidence 34467899999999 877766665 344689999999 676667788889999984 7999998776554210 0136
Q ss_pred cccEEEcccccc
Q 044245 479 KVDLLIGEPYYF 490 (694)
Q Consensus 479 ~vDvivsE~~~~ 490 (694)
++|+|++.+-|.
T Consensus 156 ~fD~Vl~d~Pcs 167 (274)
T 3ajd_A 156 FFDKILLDAPCS 167 (274)
T ss_dssp CEEEEEEEECCC
T ss_pred cCCEEEEcCCCC
Confidence 799999985443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.74 E-value=5.3e-05 Score=81.68 Aligned_cols=108 Identities=13% Similarity=0.017 Sum_probs=71.0
Q ss_pred CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccC-----C-cccccEEEeeccccccccc--
Q 044245 404 RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPN-----C-FSIDRVEILQKGKKCLTMD-- 473 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N-----~-l~~~~i~vi~~~~~~~~~~-- 473 (694)
.++..||||||| |.++..+|+. |...+|+++|. ++.+.+.+++.++.+ | +...+|+++.+..+++...
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDM--LDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEEC--CHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 367899999999 8888777775 22359999999 776666777666554 4 4325899999988876322
Q ss_pred -ccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 474 -DTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 474 -~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.++.+++|+|++-..+.. ++ +.-. ..+ .+.+.|||||.++
T Consensus 160 ~~~~~~~fD~V~~~~~l~~----~~-d~~~--~l~-~~~r~LkpgG~l~ 200 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNL----ST-NKLA--LFK-EIHRVLRDGGELY 200 (383)
T ss_dssp CCCCTTCEEEEEEESCGGG----CS-CHHH--HHH-HHHHHEEEEEEEE
T ss_pred CCCCCCCEEEEEEccchhc----CC-CHHH--HHH-HHHHHcCCCCEEE
Confidence 344578999999753221 11 1111 111 2234799999765
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=72.78 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=57.0
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCC-ceEEEcCCCcChhHHHHHHHHhccCCc----ccccEEEeecccccccccccCC
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKT-AHVLSLLPGLGDKGAQYLRTVADPNCF----SIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a-~~V~ave~~~~~~~~~~~~~i~~~N~l----~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
.++..|||+||| |.++..+|+..|. .+|+++|. ++.+.+.+++.++.+++ . ++|+++.++..+... ..
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~---~~ 149 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDH--IKELVDDSVNNVRKDDPTLLSS-GRVQLVVGDGRMGYA---EE 149 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHCTHHHHT-SSEEEEESCGGGCCG---GG
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeC--CHHHHHHHHHHHHhhcccccCC-CcEEEEECCcccCcc---cC
Confidence 467899999999 8888877776324 59999999 67666777777777764 3 579999886553221 23
Q ss_pred ccccEEEccc
Q 044245 478 KKVDLLIGEP 487 (694)
Q Consensus 478 ~~vDvivsE~ 487 (694)
.+.|+|++-.
T Consensus 150 ~~fD~i~~~~ 159 (226)
T 1i1n_A 150 APYDAIHVGA 159 (226)
T ss_dssp CCEEEEEECS
T ss_pred CCcCEEEECC
Confidence 5799998764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4e-05 Score=77.27 Aligned_cols=110 Identities=11% Similarity=-0.025 Sum_probs=69.7
Q ss_pred CCCcEEEecCC-chHHHHHHHc--CCCceEEEcCCCcChhHHHHHHHHhccC---Cccccc-------------------
Q 044245 405 VQPLCVVADDS-VFLTICVARL--SKTAHVLSLLPGLGDKGAQYLRTVADPN---CFSIDR------------------- 459 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~--g~a~~V~ave~~~~~~~~~~~~~i~~~N---~l~~~~------------------- 459 (694)
++..|||+||| |.+++.+|+. .+..+|+++|- ++.+.+.|++.+..+ +++ ++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDi--s~~~l~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDV--DPAPLELAAKNLALLSPAGLT-ARELERREQSERFGKPSYLEA 127 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEES--CHHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEEC--CHHHHHHHHHHHHHhhhcccc-ccchhhhhhhhhcccccchhh
Confidence 45689999999 8888888775 22468999999 777777888888877 775 44
Q ss_pred ------EE-------------Eeeccccccccc-cc-CCccccEEEccccccCCccccCcch-----hhHHHHHhhcccc
Q 044245 460 ------VE-------------ILQKGKKCLTMD-DT-QQKKVDLLIGEPYYFGNDGMLPWQN-----LRFWKERSKLDPV 513 (694)
Q Consensus 460 ------i~-------------vi~~~~~~~~~~-~l-~~~~vDvivsE~~~~~~e~~l~w~~-----l~f~~~r~~~~~~ 513 (694)
|+ +++++..+.... .+ ..++.|+||+-|-|.. ...|.. ..--+.+ ...++
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~---~~~~~~~~~~~~~~~~l~-~~~~~ 203 (250)
T 1o9g_A 128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE---RTHWEGQVPGQPVAGLLR-SLASA 203 (250)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG---SSSSSSCCCHHHHHHHHH-HHHHH
T ss_pred hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeec---cccccccccccHHHHHHH-HHHHh
Confidence 77 888765542210 00 2347999999864332 122221 1000111 22347
Q ss_pred cCCCceEE
Q 044245 514 LSKEVIIM 521 (694)
Q Consensus 514 L~p~g~i~ 521 (694)
|+|||.++
T Consensus 204 LkpgG~l~ 211 (250)
T 1o9g_A 204 LPAHAVIA 211 (250)
T ss_dssp SCTTCEEE
T ss_pred cCCCcEEE
Confidence 99999765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=75.38 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=64.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||+ . . +|.|+.|++.|+++.. .+++++.+++.++....
T Consensus 10 ~~~g~~vL~~~~g~-----------v-----------~----vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~ 58 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------S-----------P----VEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSA 58 (176)
T ss_dssp CCTTSEEEEEECTT-----------S-----------C----HHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGC
T ss_pred CCCCCEEEEecCCc-----------e-----------e----eeCCHHHHHHHHHhcc-----cCcEEEEechhcCcccc
Confidence 56789999999985 1 1 7889999999987643 24889999998876410
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+++||+|++...-.++ .++ ...++..+.++|+|||+++-
T Consensus 59 ~~~~~fD~V~~~~~l~~~-~~~-~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 59 HKESSFDIILSGLVPGST-TLH-SAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp CCSSCEEEEEECCSTTCC-CCC-CHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEeEEEECChhhhc-ccC-HHHHHHHHHHHCCCCEEEEE
Confidence 123689999985332222 122 35667777789999999876
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.1e-05 Score=76.17 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHH-H---HHHHhccCCcccccEEEeecccccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQ-Y---LRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~-~---~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.++..|||+||| |.++..+|+.+...+|+++|. ++.+.+ + +++..+.+++ .+|+++.++.+++..
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~--s~~~l~~~~~~a~~~~~~~~~--~~v~~~~~d~~~l~~ 95 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDA--DKSRMEKISAKAAAKPAKGGL--PNLLYLWATAERLPP 95 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEES--CGGGGHHHHHHHTSCGGGTCC--TTEEEEECCSTTCCS
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhhhhcCC--CceEEEecchhhCCC
Confidence 467789999999 988888888743579999999 443212 2 2223345666 479999998877653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.6e-05 Score=79.47 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=65.7
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+..|.... ....++.|||||+| |.++..+++.++..+|+++|. ++.+.+++++.+.. +++..++++++.++
T Consensus 80 ~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~ar~~~~~~~~~~~~~rv~v~~~D 157 (304)
T 2o07_A 80 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEI--DEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 157 (304)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHhHHhhcccCCCcEEEEECc
Confidence 4555555432 12245789999999 999999988754689999999 67666777776654 56632789999987
Q ss_pred cccccccccCCccccEEEcccc
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPY 488 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~ 488 (694)
..+.-. . ..++.|+||+.+.
T Consensus 158 a~~~l~-~-~~~~fD~Ii~d~~ 177 (304)
T 2o07_A 158 GFEFMK-Q-NQDAFDVIITDSS 177 (304)
T ss_dssp HHHHHH-T-CSSCEEEEEEECC
T ss_pred HHHHHh-h-CCCCceEEEECCC
Confidence 654311 1 2468999999764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.9e-05 Score=76.19 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=53.2
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc---
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM--- 472 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~--- 472 (694)
+.......++..||||||| |.+++.+|+.| .+|+++|. ++.+.+.+++.++.+. ++...+++..
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~--S~~ml~~Ar~~~~~~~--------v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALERG--ASVTVFDF--SQRMCDDLAEALADRC--------VTIDLLDITAEIP 104 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHTSSSC--------CEEEECCTTSCCC
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEEC--CHHHHHHHHHHHHhcc--------ceeeeeecccccc
Confidence 3334444567899999999 99999999985 48999999 7766667777666542 2222233322
Q ss_pred cccCCccccEEEccc
Q 044245 473 DDTQQKKVDLLIGEP 487 (694)
Q Consensus 473 ~~l~~~~vDvivsE~ 487 (694)
.++ .++.|+|++-.
T Consensus 105 ~~~-~~~fD~Vv~~~ 118 (261)
T 3iv6_A 105 KEL-AGHFDFVLNDR 118 (261)
T ss_dssp GGG-TTCCSEEEEES
T ss_pred ccc-CCCccEEEEhh
Confidence 122 36799999964
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.1e-05 Score=78.06 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred cEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEc
Q 044245 408 LCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 408 ~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivs 485 (694)
.||+||+| |.++..+++ ..+ .+|++||- ++.+.+++++....++ . .+++++.++..+.-. .++.++.|+||+
T Consensus 92 rVLdIG~G~G~la~~la~~~p~-~~v~~VEi--dp~vi~~Ar~~~~~~~-~-~rv~v~~~Da~~~l~-~~~~~~fDvIi~ 165 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQ-SRNTVVEL--DAELARLSREWFDIPR-A-PRVKIRVDDARMVAE-SFTPASRDVIIR 165 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTT-CEEEEEES--CHHHHHHHHHHSCCCC-T-TTEEEEESCHHHHHH-TCCTTCEEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHCCC-cEEEEEEC--CHHHHHHHHHhccccC-C-CceEEEECcHHHHHh-hccCCCCCEEEE
Confidence 89999999 888888888 443 48999999 6766677887776543 2 689999987665422 223478999999
Q ss_pred cccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 486 EPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 486 E~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+... + .+ ..| .| + +. ..+.|+|||+++
T Consensus 166 D~~~~~--~-~~-~~L~t~ef-l-~~-~~r~LkpgGvlv 197 (317)
T 3gjy_A 166 DVFAGA--I-TP-QNFTTVEF-F-EH-CHRGLAPGGLYV 197 (317)
T ss_dssp CCSTTS--C-CC-GGGSBHHH-H-HH-HHHHEEEEEEEE
T ss_pred CCCCcc--c-cc-hhhhHHHH-H-HH-HHHhcCCCcEEE
Confidence 865332 1 22 122 22 1 11 234699999876
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=4.5e-05 Score=80.91 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=71.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.+.+.....++..|||+||| |.++..+++.+...+|+++|. ++.+.+.+++.++.|++. ++++.++..+.
T Consensus 187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~--s~~~l~~a~~~~~~~~~~---~~~~~~d~~~~---- 257 (343)
T 2pjd_A 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDV--SAPAVEASRATLAANGVE---GEVFASNVFSE---- 257 (343)
T ss_dssp HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEES--BHHHHHHHHHHHHHTTCC---CEEEECSTTTT----
T ss_pred HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHHhCCC---CEEEEcccccc----
Confidence 34444433345689999999 999999999863359999999 777777888888889885 45566654322
Q ss_pred cCCccccEEEccccccCCcccc-CcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGML-PWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l-~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..++.|+|++-+-|.. +.- ..+... -.-....+.|+|||.++
T Consensus 258 -~~~~fD~Iv~~~~~~~--g~~~~~~~~~--~~l~~~~~~LkpgG~l~ 300 (343)
T 2pjd_A 258 -VKGRFDMIISNPPFHD--GMQTSLDAAQ--TLIRGAVRHLNSGGELR 300 (343)
T ss_dssp -CCSCEEEEEECCCCCS--SSHHHHHHHH--HHHHHHGGGEEEEEEEE
T ss_pred -ccCCeeEEEECCCccc--CccCCHHHHH--HHHHHHHHhCCCCcEEE
Confidence 1468999999863321 111 101110 11112245799999753
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0001 Score=80.72 Aligned_cols=93 Identities=13% Similarity=-0.033 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
...+.+.+.....++..|||+||| |.+++.+|+. +.+|+++|. ++.+.+.|++.++.||+. +++++.++.++.
T Consensus 273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~--s~~al~~A~~n~~~~~~~--~v~f~~~d~~~~ 346 (433)
T 1uwv_A 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEG--VPALVEKGQQNARLNGLQ--NVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEECCTTSC
T ss_pred HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeC--CHHHHHHHHHHHHHcCCC--ceEEEECCHHHH
Confidence 333333344444466799999999 9999999987 479999999 777778899999999994 799999987763
Q ss_pred ccc-ccCCccccEEEcccccc
Q 044245 471 TMD-DTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 471 ~~~-~l~~~~vDvivsE~~~~ 490 (694)
-.. .+..+++|+||+.|=+.
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~ 367 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARA 367 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTT
T ss_pred hhhhhhhcCCCCEEEECCCCc
Confidence 211 12235799999997444
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=73.22 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.++...++.| .+|+++|. ++.+.+.+++.+ .++. .+++++.+..+++. ++.+++|+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~~-~~~~--~~~~~~~~d~~~~~---~~~~~fD~ 107 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARG--YRYIALDA--DAAMLEVFRQKI-AGVD--RKVQVVQADARAIP---LPDESVHG 107 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTT--CEEEEEES--CHHHHHHHHHHT-TTSC--TTEEEEESCTTSCC---SCTTCEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEEC--CHHHHHHHHHHh-hccC--CceEEEEcccccCC---CCCCCeeE
Confidence 356799999999 98888888875 58999999 666666666655 3333 57999998776554 33468999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++-..+. .++ +.-. .. ..+.+.|+|||.++
T Consensus 108 v~~~~~l~----~~~-~~~~--~l-~~~~~~L~pgG~l~ 138 (263)
T 2yqz_A 108 VIVVHLWH----LVP-DWPK--VL-AEAIRVLKPGGALL 138 (263)
T ss_dssp EEEESCGG----GCT-THHH--HH-HHHHHHEEEEEEEE
T ss_pred EEECCchh----hcC-CHHH--HH-HHHHHHCCCCcEEE
Confidence 99853211 111 1111 11 12234699999775
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.2e-05 Score=83.40 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc--CCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT--QQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l--~~~~vD 481 (694)
+++.|||+||| |.+++.+|+. +++|+++|. ++.+.+.+++.++.||++ + ++++.++++++... + ..++.|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~--s~~~~~~a~~n~~~n~~~-~-~~~~~~d~~~~~~~-~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDS--SAEALRRAEENARLNGLG-N-VRVLEANAFDLLRR-LEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEES--CHHHHHHHHHHHHHTTCT-T-EEEEESCHHHHHHH-HHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEEC--CHHHHHHHHHHHHHcCCC-C-ceEEECCHHHHHHH-HHhcCCCee
Confidence 56789999999 9999999997 689999999 788888899999999996 5 99999987665321 1 136799
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+||+.|
T Consensus 282 ~Ii~dp 287 (382)
T 1wxx_A 282 LVVLDP 287 (382)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999985
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.9e-05 Score=78.70 Aligned_cols=49 Identities=10% Similarity=-0.107 Sum_probs=35.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC 454 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~ 454 (694)
++++.||||||| |.+++.+|+.-+..+|+++|. ++.+.+.|++.++.++
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDi--s~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDI--DSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHTC----
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHHHHhhh
Confidence 467899999999 988887777623679999999 6666667777666544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=71.60 Aligned_cols=108 Identities=10% Similarity=0.050 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
|.+.+..... .++..|||+||| |.++...++.| .+|+++|. ++.+.+.+++... ++|+++.+..+++.
T Consensus 34 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~~~------~~~~~~~~d~~~~~ 102 (220)
T 3hnr_A 34 YEDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAG--RTVYGIEP--SREMRMIAKEKLP------KEFSITEGDFLSFE 102 (220)
T ss_dssp HHHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTT--CEEEEECS--CHHHHHHHHHHSC------TTCCEESCCSSSCC
T ss_pred HHHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCC--CeEEEEeC--CHHHHHHHHHhCC------CceEEEeCChhhcC
Confidence 3444444333 367799999999 98888888885 48999999 6655555554432 36888888766654
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. + ++.|+|++-..+. .++ ..-.. ..-..+.+.|+|||.++
T Consensus 103 ~---~-~~fD~v~~~~~l~----~~~-~~~~~-~~l~~~~~~LkpgG~l~ 142 (220)
T 3hnr_A 103 V---P-TSIDTIVSTYAFH----HLT-DDEKN-VAIAKYSQLLNKGGKIV 142 (220)
T ss_dssp C---C-SCCSEEEEESCGG----GSC-HHHHH-HHHHHHHHHSCTTCEEE
T ss_pred C---C-CCeEEEEECcchh----cCC-hHHHH-HHHHHHHHhcCCCCEEE
Confidence 3 2 7899999863211 122 11000 01122335799999776
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.3e-05 Score=73.18 Aligned_cols=113 Identities=6% Similarity=0.043 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chH-HHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFL-TICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giL-sl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
|.+.+.......++..|||+||| |.+ ..++++.| .+|+++|. ++.+.+.+++.++.++ .+++++.+..+++
T Consensus 11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~--s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~ 83 (209)
T 2p8j_A 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEI--SDLQLKKAENFSRENN---FKLNISKGDIRKL 83 (209)
T ss_dssp HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEEC--CHHHHHHHHHHHHHHT---CCCCEEECCTTSC
T ss_pred HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEEC--CHHHHHHHHHHHHhcC---CceEEEECchhhC
Confidence 44444433333457899999999 765 34445654 48999999 6666667777666555 2578888776654
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. ++.+++|+|++-.... . ++.+... -.-..+.+.|+|||.++
T Consensus 84 ~---~~~~~fD~v~~~~~l~---~-~~~~~~~--~~l~~~~~~LkpgG~l~ 125 (209)
T 2p8j_A 84 P---FKDESMSFVYSYGTIF---H-MRKNDVK--EAIDEIKRVLKPGGLAC 125 (209)
T ss_dssp C---SCTTCEEEEEECSCGG---G-SCHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred C---CCCCceeEEEEcChHH---h-CCHHHHH--HHHHHHHHHcCCCcEEE
Confidence 3 3346899999853111 1 1111111 11122234799999765
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.1e-05 Score=77.82 Aligned_cols=80 Identities=6% Similarity=0.002 Sum_probs=60.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++.|||||+| |.++..+++..+..+|+++|. ++.+.+++++.+.. |++..++++++.++..+.-. . ..++.|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--s~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~-~-~~~~fD 191 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEI--DETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE-N-VTNTYD 191 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-H-CCSCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-h-cCCCce
Confidence 45789999999 999988888733689999999 77777788887766 56633689999987654311 1 146799
Q ss_pred EEEcccc
Q 044245 482 LLIGEPY 488 (694)
Q Consensus 482 vivsE~~ 488 (694)
+||+.++
T Consensus 192 vIi~d~~ 198 (321)
T 2pt6_A 192 VIIVDSS 198 (321)
T ss_dssp EEEEECC
T ss_pred EEEECCc
Confidence 9999753
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=70.57 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=62.4
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
+..|||+||| |.++...++.| + +|+++|. ++.+.+.+++. . .+++++.+..+++.. +.++.|+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~-~-~v~gvD~--s~~~~~~a~~~-----~--~~~~~~~~d~~~~~~---~~~~fD~v~ 107 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG-H-QIEGLEP--ATRLVELARQT-----H--PSVTFHHGTITDLSD---SPKRWAGLL 107 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT-C-CEEEECC--CHHHHHHHHHH-----C--TTSEEECCCGGGGGG---SCCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcC-C-eEEEEeC--CHHHHHHHHHh-----C--CCCeEEeCccccccc---CCCCeEEEE
Confidence 6789999999 98888888885 4 8999999 66554454432 2 368888887776543 357899999
Q ss_pred ccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 485 GEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 485 sE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+-..+. .++.+... ..-..+.+.|+|||.++
T Consensus 108 ~~~~l~----~~~~~~~~--~~l~~~~~~L~pgG~l~ 138 (203)
T 3h2b_A 108 AWYSLI----HMGPGELP--DALVALRMAVEDGGGLL 138 (203)
T ss_dssp EESSST----TCCTTTHH--HHHHHHHHTEEEEEEEE
T ss_pred ehhhHh----cCCHHHHH--HHHHHHHHHcCCCcEEE
Confidence 953111 12212221 11122234799999764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.8e-05 Score=74.30 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
....+.+.+. ++..||||||| |.++..+++.| + +|+++|. ++.+.+.++ .+... .+++++.+..+++.
T Consensus 43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~----~~~~~-~~~~~~~~d~~~~~ 111 (242)
T 3l8d_A 43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTG-Y-KAVGVDI--SEVMIQKGK----ERGEG-PDLSFIKGDLSSLP 111 (242)
T ss_dssp HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTT-C-EEEEEES--CHHHHHHHH----TTTCB-TTEEEEECBTTBCS
T ss_pred HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcC-C-eEEEEEC--CHHHHHHHH----hhccc-CCceEEEcchhcCC
Confidence 4445555543 56799999999 98988888885 4 8999999 665544443 33333 68999998777654
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+++|+|++-..+. . ++ +... .. ..+.+.|+|||.++
T Consensus 112 ---~~~~~fD~v~~~~~l~---~-~~-~~~~--~l-~~~~~~L~pgG~l~ 150 (242)
T 3l8d_A 112 ---FENEQFEAIMAINSLE---W-TE-EPLR--AL-NEIKRVLKSDGYAC 150 (242)
T ss_dssp ---SCTTCEEEEEEESCTT---S-SS-CHHH--HH-HHHHHHEEEEEEEE
T ss_pred ---CCCCCccEEEEcChHh---h-cc-CHHH--HH-HHHHHHhCCCeEEE
Confidence 3357899999853211 1 12 1111 11 12234699999664
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=78.45 Aligned_cols=90 Identities=14% Similarity=0.013 Sum_probs=70.8
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
..+++.... ..++..|||+||| |.+++.+|+.|...+|+++|. ++.+.+.|++.++.+|++ ++|++++++.+++.
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Di--s~~~l~~A~~n~~~~gl~-~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEK--YRKHLIGAEMNALAAGVL-DKIKFIQGDATQLS 281 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEES--CHHHHHHHHHHHHHTTCG-GGCEEEECCGGGGG
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeC--CHHHHHHHHHHHHHcCCC-CceEEEECChhhCC
Confidence 344444444 4567899999999 999999999862249999999 777778899999999997 89999999887765
Q ss_pred ccccCCccccEEEccccc
Q 044245 472 MDDTQQKKVDLLIGEPYY 489 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~ 489 (694)
. +.++.|+||+.|-|
T Consensus 282 ~---~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 282 Q---YVDSVDFAISNLPY 296 (373)
T ss_dssp G---TCSCEEEEEEECCC
T ss_pred c---ccCCcCEEEECCCC
Confidence 3 23679999998533
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=78.33 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=61.9
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc-ccccccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC-LTMDDTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~-~~~~~l~~~~vD 481 (694)
.+++.|||+| | |.+++.+|+.|...+|+++|- ++.+.+.+++.++.||++ +|+++.++..+ +.. .+ .+++|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi--~~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~l~~-~~-~~~fD 243 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDI--DERLTKFIEKAANEIGYE--DIEIFTFDLRKPLPD-YA-LHKFD 243 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECS--CHHHHHHHHHHHHHHTCC--CEEEECCCTTSCCCT-TT-SSCBS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--CEEEEEChhhhhchh-hc-cCCcc
Confidence 3578999999 9 999999999862289999999 777778889999999984 79999997765 321 11 35799
Q ss_pred EEEcccc
Q 044245 482 LLIGEPY 488 (694)
Q Consensus 482 vivsE~~ 488 (694)
+||+-|-
T Consensus 244 ~Vi~~~p 250 (373)
T 2qm3_A 244 TFITDPP 250 (373)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999863
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=71.74 Aligned_cols=82 Identities=11% Similarity=-0.044 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
..+.+.|.+.+. +++.|||+||| |.++..+++. .+|+++|. ++.+.+.+++.++.++ .+++++.+..++
T Consensus 21 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~--s~~~~~~a~~~~~~~~---~~~~~~~~d~~~ 90 (243)
T 3d2l_A 21 PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH---YEVTGVDL--SEEMLEIAQEKAMETN---RHVDFWVQDMRE 90 (243)
T ss_dssp HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT---SEEEEEES--CHHHHHHHHHHHHHTT---CCCEEEECCGGG
T ss_pred HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC---CeEEEEEC--CHHHHHHHHHhhhhcC---CceEEEEcChhh
Confidence 456666766654 46789999999 9888888775 68999999 6766667777776665 358888887665
Q ss_pred ccccccCCccccEEEcc
Q 044245 470 LTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE 486 (694)
+. + +++.|+|++-
T Consensus 91 ~~---~-~~~fD~v~~~ 103 (243)
T 3d2l_A 91 LE---L-PEPVDAITIL 103 (243)
T ss_dssp CC---C-SSCEEEEEEC
T ss_pred cC---C-CCCcCEEEEe
Confidence 43 2 3689999974
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.3e-05 Score=76.45 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+... .+..||||||| |.++...|+.| .+|+++|. ++.+.+ .++. . .+|+++.+..+++..
T Consensus 32 ~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~--s~~ml~----~a~~--~--~~v~~~~~~~e~~~~-- 95 (257)
T 4hg2_A 32 WLGEVAP--ARGDALDCGCGSGQASLGLAEFF--ERVHAVDP--GEAQIR----QALR--H--PRVTYAVAPAEDTGL-- 95 (257)
T ss_dssp HHHHHSS--CSSEEEEESCTTTTTHHHHHTTC--SEEEEEES--CHHHHH----TCCC--C--TTEEEEECCTTCCCC--
T ss_pred HHHHhcC--CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeC--cHHhhh----hhhh--c--CCceeehhhhhhhcc--
Confidence 3444432 34689999999 99988888885 58999999 554322 1222 2 479999998877654
Q ss_pred cCCccccEEEccccccCCccccCcchh-hHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNL-RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l-~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.+.+|+|++-. .+.|-.. .+ +. ...+.|||||.+.
T Consensus 96 -~~~sfD~v~~~~-------~~h~~~~~~~-~~--e~~rvLkpgG~l~ 132 (257)
T 4hg2_A 96 -PPASVDVAIAAQ-------AMHWFDLDRF-WA--ELRRVARPGAVFA 132 (257)
T ss_dssp -CSSCEEEEEECS-------CCTTCCHHHH-HH--HHHHHEEEEEEEE
T ss_pred -cCCcccEEEEee-------ehhHhhHHHH-HH--HHHHHcCCCCEEE
Confidence 457899999843 1222222 11 21 2235799999763
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=74.31 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=67.1
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
...++..|||+||| |.++..+|+.. ..+|+++|. ++.+.+.+++.++.+ ++|+++.++.+++. ++.++.
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~--s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~---~~~~~f 121 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDI--CSNIVNMANERVSGN----NKIIFEANDILTKE---FPENNF 121 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEES--CHHHHHHHHHTCCSC----TTEEEEECCTTTCC---CCTTCE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeC--CHHHHHHHHHHhhcC----CCeEEEECccccCC---CCCCcE
Confidence 33467799999999 88888887763 369999999 666556666555443 47999998776653 335789
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++-..+. . ++..... -.-..+.+.|+|||.++
T Consensus 122 D~v~~~~~l~---~-~~~~~~~--~~l~~~~~~L~pgG~l~ 156 (266)
T 3ujc_A 122 DLIYSRDAIL---A-LSLENKN--KLFQKCYKWLKPTGTLL 156 (266)
T ss_dssp EEEEEESCGG---G-SCHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred EEEeHHHHHH---h-cChHHHH--HHHHHHHHHcCCCCEEE
Confidence 9999853211 1 1101111 11112234799999776
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=74.20 Aligned_cols=129 Identities=7% Similarity=0.009 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH----------------
Q 044245 50 SYRNRAYRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP---------------- 111 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~---------------- 111 (694)
..|......+++... ...+.|||+|+..|.-++.+++..... ..+..+|+++|..+.
T Consensus 88 ~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~-----g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~ 162 (282)
T 2wk1_A 88 IKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAH-----DVRDRTVWVADSFQGIPDVGEDGYAGDRKMA 162 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHT-----TCCSCCEEEEECSSCSCCCCTTSCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhc-----CCCCCEEEEEECCCCCCcccccccccccccc
Confidence 455666666666654 336799999999999888877653100 001368999996421
Q ss_pred ----------HHHHHHHHHHHcCCC-CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCC
Q 044245 112 ----------MVKLMKKVLHVNGMG-RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVE 180 (694)
Q Consensus 112 ----------~~~~A~~~~~~ngl~-~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p 180 (694)
..+.++++++..|+. ++|+++.|++.+... ....+++|+|..+. . .++... ..++.+..+|+|
T Consensus 163 ~~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~-~~~~~~~d~vfIDa---D-~y~~~~-~~Le~~~p~L~p 236 (282)
T 2wk1_A 163 LHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLP-TAPIDTLAVLRMDG---D-LYESTW-DTLTNLYPKVSV 236 (282)
T ss_dssp GGGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHST-TCCCCCEEEEEECC---C-SHHHHH-HHHHHHGGGEEE
T ss_pred cccccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHh-hCCCCCEEEEEEcC---C-ccccHH-HHHHHHHhhcCC
Confidence 467789999999994 899999999876432 21236899998652 1 122222 345556678999
Q ss_pred CCeEEcCce
Q 044245 181 NPLTVPCRV 189 (694)
Q Consensus 181 ~G~iiP~~~ 189 (694)
||+++-+..
T Consensus 237 GGiIv~DD~ 245 (282)
T 2wk1_A 237 GGYVIVDDY 245 (282)
T ss_dssp EEEEEESSC
T ss_pred CEEEEEcCC
Confidence 999998875
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00014 Score=75.42 Aligned_cols=65 Identities=23% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
.+.+.|...-.++.+|||++||+|..++.+++.|. +++|+|+++.+++.|+++++...-...+.+
T Consensus 224 l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~------------~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~ 288 (297)
T 2zig_A 224 LAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR------------RALGVELVPRYAQLAKERFAREVPGFSLEV 288 (297)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHHSTTCCEEE
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC------------eEEEEeCCHHHHHHHHHHHHHhccccchhh
Confidence 34444554445789999999999999999999875 899999999999999999876533334443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=72.05 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCC
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPG 437 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~ 437 (694)
...++|.......+++.||||||| |.++..+++.| +++|++++.+
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis 69 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVG 69 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSS
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCC
Confidence 355667666555567899999999 99998888886 8899999994
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=75.33 Aligned_cols=119 Identities=10% Similarity=0.053 Sum_probs=75.9
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC--cccccEEEeecc
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC--FSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--l~~~~i~vi~~~ 466 (694)
.|++.+.... ...+++.|||||+| |.++..+++..+..+|+++|. ++.+.+++++.+..++ +...+++++.++
T Consensus 63 ~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D 140 (283)
T 2i7c_A 63 AYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEI--DETVIEVSKIYFKNISCGYEDKRVNVFIED 140 (283)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCTTTSGGGGSTTEEEEESC
T ss_pred hHHHHHHHHHHhcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHhHHhccccCCCcEEEEECC
Confidence 4555554432 11245789999999 888888888754689999999 7777778887776543 422689999987
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+... .. .++.|+||+..+... + +-..+ .| + + ...+.|+|||+++
T Consensus 141 ~~~~l~-~~-~~~fD~Ii~d~~~~~--~--~~~~l~~~~~-l-~-~~~~~L~pgG~lv 189 (283)
T 2i7c_A 141 ASKFLE-NV-TNTYDVIIVDSSDPI--G--PAETLFNQNF-Y-E-KIYNALKPNGYCV 189 (283)
T ss_dssp HHHHHH-HC-CSCEEEEEEECCCTT--T--GGGGGSSHHH-H-H-HHHHHEEEEEEEE
T ss_pred hHHHHH-hC-CCCceEEEEcCCCCC--C--cchhhhHHHH-H-H-HHHHhcCCCcEEE
Confidence 654321 11 468999999753221 1 10112 11 1 1 1234699999875
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00018 Score=72.96 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=63.3
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..||||||| |.|+...|+.| .+|+++|- ++.+.+.+++.+.. . +++++++++..++...+
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEi--d~~~~~~~~~~~~~---~-~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 20 KIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEI--DRDLVAFLQKKYNQ---Q-KNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEEC--CHHHHHHHHHHHTT---C-TTEEEEESCTTTCCGGG
T ss_pred HHHHhcCCCCcCEEEEEcccccHHHHHHHHhC--CEEEEEEC--CHHHHHHHHHHHhh---C-CCcEEEEcchHhCCHHH
Confidence 34455555567899999999 99999999984 68999999 66666677666554 2 68999999988876654
Q ss_pred cC-CccccEEEcc-cccc
Q 044245 475 TQ-QKKVDLLIGE-PYYF 490 (694)
Q Consensus 475 l~-~~~vDvivsE-~~~~ 490 (694)
+. +++.| ||+. ||+.
T Consensus 92 ~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp SCCSSCEE-EEEECCHHH
T ss_pred hccCCCeE-EEecCCccc
Confidence 42 34567 7777 5654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.6e-05 Score=81.50 Aligned_cols=118 Identities=10% Similarity=-0.062 Sum_probs=79.5
Q ss_pred cCCCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||+|+| |-.++.+|+ .++..+|+|+|. ++.+.+.+++.++.+|++ +|++++++.+++... + +++
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDi--s~~rl~~~~~n~~r~g~~--nv~v~~~Da~~l~~~-~-~~~ 175 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEI--FPKRAKILSENIERWGVS--NAIVTNHAPAELVPH-F-SGF 175 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECS--SHHHHHHHHHHHHHHTCS--SEEEECCCHHHHHHH-H-TTC
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhhh-c-ccc
Confidence 34567899999999 877776665 444579999999 676677889999999995 599998877665321 1 468
Q ss_pred ccEEEccccccCCccccCcc----------hhh------HHHHHhhcccccCCCceEEcceEEE
Q 044245 480 VDLLIGEPYYFGNDGMLPWQ----------NLR------FWKERSKLDPVLSKEVIIMPFKGIL 527 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l~w~----------~l~------f~~~r~~~~~~L~p~g~i~P~~a~l 527 (694)
+|+|++.+=|.+ +|++.-+ .+. .-..+.+ .++|||||+++=+.|++
T Consensus 176 FD~Il~DaPCSg-~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a-~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 176 FDRIVVDAPCSG-EGMFRKDPNAIKEWTEESPLYCQKRQQEILSSA-IKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEEEEECCCCC-GGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHH-HHTEEEEEEEEEEESCC
T ss_pred CCEEEECCCCCC-ccccccCHHHhhhcCHHHHHHHHHHHHHHHHHH-HHhcCCCcEEEEEEeec
Confidence 999999864444 4665311 000 0011121 24799999887555543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=82.67 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHh------ccCCcccccEEEeec
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVA------DPNCFSIDRVEILQK 465 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~------~~N~l~~~~i~vi~~ 465 (694)
.+++.+.+...++..||||||| |.++..+|+.|+ ..+|+++|. ++.+.+.|++.+ +.+++ .+|+++++
T Consensus 710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDI--S~emLe~AReRLa~~lnAkr~gl--~nVefiqG 785 (950)
T 3htx_A 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDI--SPKGLARAAKMLHVKLNKEACNV--KSATLYDG 785 (950)
T ss_dssp HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEES--CHHHHHHHHHHHHHHTTTTCSSC--SEEEEEES
T ss_pred HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEEC--CHHHHHHHHHHhhhccchhhcCC--CceEEEEC
Confidence 3444444444467899999999 999999999862 279999999 666666666533 24566 48999999
Q ss_pred ccccccccccCCccccEEEcc
Q 044245 466 GKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE 486 (694)
+.+++.. ..+.+|+|++-
T Consensus 786 Da~dLp~---~d~sFDlVV~~ 803 (950)
T 3htx_A 786 SILEFDS---RLHDVDIGTCL 803 (950)
T ss_dssp CTTSCCT---TSCSCCEEEEE
T ss_pred chHhCCc---ccCCeeEEEEe
Confidence 8777654 24789999984
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=73.12 Aligned_cols=76 Identities=8% Similarity=-0.017 Sum_probs=55.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC--------CcccccEEEeeccccccccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN--------CFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N--------~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+++.||||||| |.+++.+|+.+...+|+++|. ++.+.+.+++.++.| ++. +|+++.++..+.-...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~~~--nv~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEI--RVQVTNYVEDRIIALRNNTASKHGFQ--NINVLRGNAMKFLPNFF 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEES--CHHHHHHHHHHHHHHHHTC-CCSTTT--TEEEEECCTTSCGGGTS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEc--CHHHHHHHHHHHHHHhhccccccCCC--cEEEEeccHHHHHHHhc
Confidence 56789999999 999998888863358999999 666666777777766 774 69999998765211123
Q ss_pred CCccccEEE
Q 044245 476 QQKKVDLLI 484 (694)
Q Consensus 476 ~~~~vDviv 484 (694)
+...+|.|+
T Consensus 125 ~~~~~d~v~ 133 (246)
T 2vdv_E 125 EKGQLSKMF 133 (246)
T ss_dssp CTTCEEEEE
T ss_pred cccccCEEE
Confidence 345677775
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00023 Score=75.56 Aligned_cols=123 Identities=14% Similarity=0.023 Sum_probs=88.0
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-----CcEEEEecccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-----RNIKVINKRSD 137 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-----~~I~vi~~~~~ 137 (694)
.+.+|.+|||+++|.|.=++.++..+. .+.|+|+|+++.-++.+++++++.+.. .+|.+...|..
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~----------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~ 214 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGC----------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR 214 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTC----------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC----------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence 356789999999999998888888764 468999999999999999999987653 47899888887
Q ss_pred ccccccCCCCCccEEEEcccccc----ccCCC-----------------hHHHHHHHHHhccCCCCeEEcCceEEEEEEe
Q 044245 138 ELEVGVDIDSRADILVSEILDSE----LLGEG-----------------LIPTLQHAHDRLLVENPLTVPCRVTTYGQLV 196 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~----l~~e~-----------------~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~v 196 (694)
.+.. ...++||.|+.+..=++ ..... ....++...-++|+|||+++=..+++. +.
T Consensus 215 ~~~~--~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~--~~ 290 (359)
T 4fzv_A 215 KWGE--LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS--HL 290 (359)
T ss_dssp GHHH--HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC--TT
T ss_pred hcch--hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc--hh
Confidence 7642 23468999998764222 11110 011344444568999999985555544 55
Q ss_pred cch
Q 044245 197 EST 199 (694)
Q Consensus 197 e~~ 199 (694)
|.+
T Consensus 291 ENE 293 (359)
T 4fzv_A 291 QNE 293 (359)
T ss_dssp TTH
T ss_pred hCH
Confidence 554
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=71.90 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
..++.+.....++..|||+||| |.++..+++.| + +|+++|. ++.+.+.+++ + .+++++....+++..
T Consensus 41 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~----~----~~~~~~~~~~~~~~~ 108 (227)
T 3e8s_A 41 DQAILLAILGRQPERVLDLGCGEGWLLRALADRG-I-EAVGVDG--DRTLVDAARA----A----GAGEVHLASYAQLAE 108 (227)
T ss_dssp HHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT-C-EEEEEES--CHHHHHHHHH----T----CSSCEEECCHHHHHT
T ss_pred cHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC-C-EEEEEcC--CHHHHHHHHH----h----cccccchhhHHhhcc
Confidence 3445555554567899999999 99998888885 4 8999999 6655445443 2 134555665555532
Q ss_pred ccc-CCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDT-QQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l-~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
... ...+.|+|++-..+. . .... ..-..+.+.|+|||.++
T Consensus 109 ~~~~~~~~fD~v~~~~~l~-~------~~~~--~~l~~~~~~L~pgG~l~ 149 (227)
T 3e8s_A 109 AKVPVGKDYDLICANFALL-H------QDII--ELLSAMRTLLVPGGALV 149 (227)
T ss_dssp TCSCCCCCEEEEEEESCCC-S------SCCH--HHHHHHHHTEEEEEEEE
T ss_pred cccccCCCccEEEECchhh-h------hhHH--HHHHHHHHHhCCCeEEE
Confidence 222 235699999864211 1 1111 11112234699999765
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=68.62 Aligned_cols=85 Identities=7% Similarity=-0.085 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcC-CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLS-KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g-~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
-+.|+.++...+. +...|||+||| |.+|+..+... +| +|+|++- ++.+.+++++.+..||.. +++++..
T Consensus 36 ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di--~~~~leiar~~~~~~g~~-~~v~~~d--- 106 (200)
T 3fzg_A 36 LNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDI--DRAEIAFLSSIIGKLKTT-IKYRFLN--- 106 (200)
T ss_dssp HHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECS--CHHHHHHHHHHHHHSCCS-SEEEEEC---
T ss_pred HHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeC--CHHHHHHHHHHHHhcCCC-ccEEEec---
Confidence 4455666666663 35689999999 99999987762 25 9999999 777778999999999997 7888822
Q ss_pred ccccccccCCccccEEEcc
Q 044245 468 KCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE 486 (694)
+... .+++..|+|++=
T Consensus 107 --~~~~-~~~~~~DvVLa~ 122 (200)
T 3fzg_A 107 --KESD-VYKGTYDVVFLL 122 (200)
T ss_dssp --CHHH-HTTSEEEEEEEE
T ss_pred --cccc-CCCCCcChhhHh
Confidence 2211 246789999885
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00015 Score=75.85 Aligned_cols=80 Identities=8% Similarity=0.013 Sum_probs=60.0
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC--CcccccEEEeecccccccccccCCcccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN--CFSIDRVEILQKGKKCLTMDDTQQKKVD 481 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N--~l~~~~i~vi~~~~~~~~~~~l~~~~vD 481 (694)
.++.|||||+| |.++..+++..+..+|+++|. ++.+.++|++.+..+ ++..++|+++.++..+.-. . ..++.|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~-~-~~~~fD 183 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEI--DEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK-N-HKNEFD 183 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECS--CHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-H-CTTCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH-h-cCCCce
Confidence 45789999999 999888888744689999999 777777888877654 5632789999987654211 1 246899
Q ss_pred EEEcccc
Q 044245 482 LLIGEPY 488 (694)
Q Consensus 482 vivsE~~ 488 (694)
+||+.++
T Consensus 184 ~Ii~d~~ 190 (314)
T 2b2c_A 184 VIITDSS 190 (314)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998763
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.3e-05 Score=75.36 Aligned_cols=74 Identities=11% Similarity=-0.045 Sum_probs=49.7
Q ss_pred CCCcEEEecCC-chHHHHHHHc----CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc-ccccCCc
Q 044245 405 VQPLCVVADDS-VFLTICVARL----SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT-MDDTQQK 478 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~----g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~-~~~l~~~ 478 (694)
+++.||||||| |.++...|+. +...+|+++|. ++.+.+.++ ++. ++|+++.++..++. .+.+...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~--s~~~l~~a~------~~~-~~v~~~~gD~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDR--DLSRCQIPA------SDM-ENITLHQGDCSDLTTFEHLREM 151 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEES--CCTTCCCCG------GGC-TTEEEEECCSSCSGGGGGGSSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeC--ChHHHHHHh------ccC-CceEEEECcchhHHHHHhhccC
Confidence 45689999999 8888777775 33479999998 443322222 344 68999999877642 1122223
Q ss_pred cccEEEccc
Q 044245 479 KVDLLIGEP 487 (694)
Q Consensus 479 ~vDvivsE~ 487 (694)
+.|+|++..
T Consensus 152 ~fD~I~~d~ 160 (236)
T 2bm8_A 152 AHPLIFIDN 160 (236)
T ss_dssp CSSEEEEES
T ss_pred CCCEEEECC
Confidence 689999764
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00025 Score=70.14 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc-cc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK-CL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~-~~ 470 (694)
+..++.... .++..|||+||| |.++..+|+.| .+|+++|. ++.+.+.+++. . .+++++.++.. .+
T Consensus 38 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~-----~--~~~~~~~~d~~~~~ 104 (226)
T 3m33_A 38 FDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDF--SPELLKLARAN-----A--PHADVYEWNGKGEL 104 (226)
T ss_dssp HHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEES--CHHHHHHHHHH-----C--TTSEEEECCSCSSC
T ss_pred HHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHcC--CEEEEEEC--CHHHHHHHHHh-----C--CCceEEEcchhhcc
Confidence 444444444 357899999999 99999999985 48999999 66655555443 2 46888888763 22
Q ss_pred cccccC-CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQ-QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~-~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
. ++ .+++|+|++-. ....+|. .+.+.|+|||.++
T Consensus 105 ~---~~~~~~fD~v~~~~---~~~~~l~-----------~~~~~LkpgG~l~ 139 (226)
T 3m33_A 105 P---AGLGAPFGLIVSRR---GPTSVIL-----------RLPELAAPDAHFL 139 (226)
T ss_dssp C---TTCCCCEEEEEEES---CCSGGGG-----------GHHHHEEEEEEEE
T ss_pred C---CcCCCCEEEEEeCC---CHHHHHH-----------HHHHHcCCCcEEE
Confidence 2 22 46899999862 1012222 1123699999998
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=73.39 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=61.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc--
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV-- 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~-- 141 (694)
+.++.+++|.+||.|..+..+++++ ++|+|+|.++.+++.|++ ++. +++++++++..++..
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~~------------g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L 82 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILERG------------GRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHL 82 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTT------------CEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHH
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHCC------------CEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHH
Confidence 5678999999999999999999984 599999999999999987 532 489999999988751
Q ss_pred ccCCCCCccEEEEcc
Q 044245 142 GVDIDSRADILVSEI 156 (694)
Q Consensus 142 ~~~l~~~~DlIvse~ 156 (694)
...-.+++|.|+.++
T Consensus 83 ~~~g~~~vDgIL~DL 97 (285)
T 1wg8_A 83 AALGVERVDGILADL 97 (285)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HHcCCCCcCEEEeCC
Confidence 110114789998763
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.51 E-value=7.9e-05 Score=75.60 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCC--CcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHH-------hccCC-cccccEEEe
Q 044245 395 MAMRNALQGRVQ--PLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTV-------ADPNC-FSIDRVEIL 463 (694)
Q Consensus 395 ~Ai~~~~~~~~~--~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i-------~~~N~-l~~~~i~vi 463 (694)
.+|.+.....++ .+|||+++| |..++++|+.| + +|+++|. ++.+..++++. .+.|+ +. ++|+++
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g-~-~V~~vE~--~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~ 150 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-C-RVRMLER--NPVVAALLDDGLARGYADAEIGGWLQ-ERLQLI 150 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-C-CEEEEEC--CHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEE
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC-C-EEEEEEC--CHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEE
Confidence 345555544456 799999999 99999999986 5 6999999 66544444443 34456 65 689999
Q ss_pred ecccccccccccCCccccEEEcccccc
Q 044245 464 QKGKKCLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 464 ~~~~~~~~~~~l~~~~vDvivsE~~~~ 490 (694)
+++.+++-. .+ .+++|+|+..|.|-
T Consensus 151 ~~D~~~~L~-~~-~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 151 HASSLTALT-DI-TPRPQVVYLDPMFP 175 (258)
T ss_dssp ESCHHHHST-TC-SSCCSEEEECCCCC
T ss_pred ECCHHHHHH-hC-cccCCEEEEcCCCC
Confidence 998776522 23 24699999998765
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00018 Score=75.23 Aligned_cols=124 Identities=8% Similarity=-0.011 Sum_probs=76.2
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CC-cccccEEEeec
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NC-FSIDRVEILQK 465 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~-l~~~~i~vi~~ 465 (694)
.|.+++.... ....++.|||||+| |.++..+++..+..+|+++|. ++.+.+++++.+.. .+ +...+++++.+
T Consensus 62 ~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~ar~~~~~~~~~~~~~~~v~~~~~ 139 (314)
T 1uir_A 62 IYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDI--DGELVEVAKRHMPEWHQGAFDDPRAVLVID 139 (314)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEES--CHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHHhHhhccccccCCceEEEEc
Confidence 3555544321 11245789999999 988888888743689999999 77666777776543 23 42268999998
Q ss_pred ccccccccccCCccccEEEccccccC-CccccCcchh---hHHHHHhhcccccCCCceEEcce
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFG-NDGMLPWQNL---RFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~-~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
+..+.-. . ..++.|+||+..+... ..+. + ..+ .| .+ ...+.|+|||+++=..
T Consensus 140 D~~~~l~-~-~~~~fD~Ii~d~~~~~~~~~~-~-~~l~~~~~--l~-~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 140 DARAYLE-R-TEERYDVVIIDLTDPVGEDNP-A-RLLYTVEF--YR-LVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CHHHHHH-H-CCCCEEEEEEECCCCBSTTCG-G-GGGSSHHH--HH-HHHHTEEEEEEEEEEE
T ss_pred hHHHHHH-h-cCCCccEEEECCCCcccccCc-c-hhccHHHH--HH-HHHHhcCCCcEEEEEc
Confidence 7665311 1 2467999999864321 0011 1 111 11 11 1234699999876543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00033 Score=73.59 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=55.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.++...++.....+|+++|. + .+.+.+++.++.+++. ++|+++.++..+.. + +++.|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~---~-~~~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW--A-SVLEVAKENARIQGVA-SRYHTIAGSAFEVD---Y-GNDYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEEC--H-HHHHHHHHHHHHHTCG-GGEEEEESCTTTSC---C-CSCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEec--H-HHHHHHHHHHHhcCCC-cceEEEecccccCC---C-CCCCcE
Confidence 356799999999 877777766522358999999 5 4445677778888887 89999998765432 2 345999
Q ss_pred EEcc
Q 044245 483 LIGE 486 (694)
Q Consensus 483 ivsE 486 (694)
|++-
T Consensus 236 v~~~ 239 (335)
T 2r3s_A 236 VLLP 239 (335)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9984
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=68.67 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.++..|||+||| |.++..+++.+ + +|+++|. ++.+.+.+++. . .+|+++.+. +. ++.+++|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~-~-~v~~vD~--s~~~~~~a~~~-----~--~~v~~~~~d---~~---~~~~~~D~ 78 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA-T-KLYCIDI--NVIALKEVKEK-----F--DSVITLSDP---KE---IPDNSVDF 78 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE-E-EEEEECS--CHHHHHHHHHH-----C--TTSEEESSG---GG---SCTTCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc-C-eEEEEeC--CHHHHHHHHHh-----C--CCcEEEeCC---CC---CCCCceEE
Confidence 456789999999 99999888986 4 9999999 66554555443 2 578888875 22 23578999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++-..+.. ++ +... +. ..+.+.|+|||.++
T Consensus 79 v~~~~~l~~----~~-~~~~--~l-~~~~~~L~pgG~l~ 109 (170)
T 3i9f_A 79 ILFANSFHD----MD-DKQH--VI-SEVKRILKDDGRVI 109 (170)
T ss_dssp EEEESCSTT----CS-CHHH--HH-HHHHHHEEEEEEEE
T ss_pred EEEccchhc----cc-CHHH--HH-HHHHHhcCCCCEEE
Confidence 998642221 11 1111 11 12234699999765
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00031 Score=71.78 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.|.+.....++ .|||||+| |.|+...++.| .+|+++|. ++.+.+.+++.+. . +++++++++..++...
T Consensus 37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEi--d~~~~~~l~~~~~----~-~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEK--DLRLRPVLEETLS----G-LPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEES--CGGGHHHHHHHTT----T-SSEEEEESCGGGSCGG
T ss_pred HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEEC--CHHHHHHHHHhcC----C-CCEEEEECChhhCChh
Confidence 345555555567 99999999 99999999985 68999999 5555556665543 2 5799999988777654
Q ss_pred ccCCccccEEEcc-ccccC
Q 044245 474 DTQQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 474 ~l~~~~vDvivsE-~~~~~ 491 (694)
++ ...|.|||- ||+..
T Consensus 107 ~~--~~~~~iv~NlPy~is 123 (271)
T 3fut_A 107 EV--PQGSLLVANLPYHIA 123 (271)
T ss_dssp GS--CTTEEEEEEECSSCC
T ss_pred hc--cCccEEEecCccccc
Confidence 33 257999998 56553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=71.62 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=44.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHH---HHHHhccCCcccccEEEeecccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQY---LRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~---~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
++.+||||||| |.++..+|+.....+|++++.+. +.+.+. |++.++.+|+. +|+++.+..+++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~-~~ml~~A~~A~~~~~~~~~~--~v~~~~~d~~~l 90 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVK-ENLFDISKKIIKKPSKGGLS--NVVFVIAAAESL 90 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCC-GGGHHHHHHHTSCGGGTCCS--SEEEECCBTTBC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHHHHHHcCCC--CeEEEEcCHHHh
Confidence 56789999999 88887777543357899999942 333222 35556677774 689999987766
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00034 Score=69.85 Aligned_cols=103 Identities=7% Similarity=-0.034 Sum_probs=65.0
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc-cC-Cccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD-TQ-QKKV 480 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~-l~-~~~v 480 (694)
.++..|||+||| |.++...|+.| . +|+++|. ++.+.+.+++... . .+++++.++.+++.... +. ....
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~-~-~v~gvD~--s~~~~~~a~~~~~----~-~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF-P-RVIGLDV--SKSALEIAAKENT----A-ANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS-S-CEEEEES--CHHHHHHHHHHSC----C-TTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC-C-CEEEEEC--CHHHHHHHHHhCc----c-cCceEEECcccccccccccccccCc
Confidence 356789999999 99999999986 4 9999999 6666556655442 1 47999998777654321 10 1237
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++-..+. .++.+...- +. ..+.+.|||||.++
T Consensus 126 d~v~~~~~~~----~~~~~~~~~-~l-~~~~~~LkpgG~l~ 160 (245)
T 3ggd_A 126 ANIYMRTGFH----HIPVEKREL-LG-QSLRILLGKQGAMY 160 (245)
T ss_dssp CEEEEESSST----TSCGGGHHH-HH-HHHHHHHTTTCEEE
T ss_pred cEEEEcchhh----cCCHHHHHH-HH-HHHHHHcCCCCEEE
Confidence 8999875322 122122210 11 12234699999643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=71.86 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=55.8
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCC------ceEEEcCCCcChhHHHHHHHHhccCCc----ccccEEEeecccccccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKT------AHVLSLLPGLGDKGAQYLRTVADPNCF----SIDRVEILQKGKKCLTM 472 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a------~~V~ave~~~~~~~~~~~~~i~~~N~l----~~~~i~vi~~~~~~~~~ 472 (694)
.++..|||+||| |.++..+|+..+. .+|+++|. ++.+.+.+++.++.+++ . ++|+++.++..+-
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~-- 157 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEH--QAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKG-- 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEES--CHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGC--
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEc--CHHHHHHHHHHHHhcCccccCC-CceEEEECCcccC--
Confidence 457799999999 8888777774223 59999999 67666777777777662 2 5799998865541
Q ss_pred cccC-CccccEEEccc
Q 044245 473 DDTQ-QKKVDLLIGEP 487 (694)
Q Consensus 473 ~~l~-~~~vDvivsE~ 487 (694)
++ ..+.|+|++-.
T Consensus 158 --~~~~~~fD~I~~~~ 171 (227)
T 1r18_A 158 --YPPNAPYNAIHVGA 171 (227)
T ss_dssp --CGGGCSEEEEEECS
T ss_pred --CCcCCCccEEEECC
Confidence 22 25799998764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0003 Score=71.16 Aligned_cols=68 Identities=6% Similarity=-0.109 Sum_probs=50.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.||||||| |.++...++.| .+|+++|. ++.+.+.+++.. .+|+++.+..+++.. +++.|+|
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~--s~~~~~~a~~~~-------~~~~~~~~d~~~~~~----~~~fD~v 114 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSF--GTVEGLEL--SADMLAIARRRN-------PDAVLHHGDMRDFSL----GRRFSAV 114 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTS--SEEEEEES--CHHHHHHHHHHC-------TTSEEEECCTTTCCC----SCCEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHcC--CeEEEEEC--CHHHHHHHHhhC-------CCCEEEECChHHCCc----cCCcCEE
Confidence 45789999999 99998888885 48999999 665555554432 257888887665543 4789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-.
T Consensus 115 ~~~~ 118 (263)
T 3pfg_A 115 TCMF 118 (263)
T ss_dssp EECT
T ss_pred EEcC
Confidence 9853
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00032 Score=72.55 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
.+.|.+.....++..|||||+| |.|+...|+. +++|+++|. ++.+.+.+++.++ +. ++++++.++..++..
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEi--d~~li~~a~~~~~--~~--~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEI--DKSLEPYANKLKE--LY--NNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEES--CGGGHHHHHHHHH--HC--SSEEEEESCTTTSCG
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEEC--CHHHHHHHHHHhc--cC--CCeEEEECchhhCCc
Confidence 3345555555567899999999 9999998887 479999999 5555566666554 23 579999998776654
Q ss_pred cccCCccccEEEcc-ccc
Q 044245 473 DDTQQKKVDLLIGE-PYY 489 (694)
Q Consensus 473 ~~l~~~~vDvivsE-~~~ 489 (694)
. ....|+||+. ||+
T Consensus 111 ~---~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 111 N---KLDFNKVVANLPYQ 125 (295)
T ss_dssp G---GSCCSEEEEECCGG
T ss_pred c---cCCccEEEEeCccc
Confidence 2 2358999998 444
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=9.1e-05 Score=74.79 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=63.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ ..+|+++|+...+...... ......++..+..+++...+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~----------~~~v~g~dVGvDl~~~pi~---~~~~g~~ii~~~~~~dv~~l-- 136 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE----------VSGVKGFTLGRDGHEKPMN---VQSLGWNIITFKDKTDIHRL-- 136 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT----------EEEEEEECCCCTTCCCCCC---CCBTTGGGEEEECSCCTTTS--
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC----------CCcceeEEEeccCcccccc---cCcCCCCeEEEeccceehhc--
Confidence 56678999999999999999887632 2578888886433100000 00011134445555433322
Q ss_pred CCCCCccEEEEccccccccCCChHH-----HHHHHHHhccCCC-CeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIP-----TLQHAHDRLLVEN-PLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~-----~l~~~~~~~L~p~-G~iiP 186 (694)
..+++|+|+|+...+ .+....+ .+++...++|+|| |.++-
T Consensus 137 -~~~~~DlVlsD~apn--sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 137 -EPVKCDTLLCDIGES--SSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp -CCCCCSEEEECCCCC--CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -CCCCccEEEecCccC--cCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 236899999986443 1211122 2345667899999 98875
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00017 Score=79.81 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=62.9
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++..|||+||| |-.++.+|+. ++..+|+|+|. ++.+.+.+++.++.+|+. +|+++.++.+++... + .+++|.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDi--s~~~l~~~~~n~~r~g~~--nv~~~~~D~~~~~~~-~-~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEF--SASRVKVLHANISRCGIS--NVALTHFDGRVFGAA-V-PEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECS--SHHHHHHHHHHHHHHTCC--SEEEECCCSTTHHHH-S-TTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCCC--cEEEEeCCHHHhhhh-c-cccCCE
Confidence 67899999999 8777766664 33579999999 676667888899999985 699999887765421 1 367999
Q ss_pred EEccccccCCcccc
Q 044245 483 LIGEPYYFGNDGML 496 (694)
Q Consensus 483 ivsE~~~~~~e~~l 496 (694)
|++.+=|.+ +|++
T Consensus 191 Il~D~PcSg-~G~~ 203 (479)
T 2frx_A 191 ILLDAPCSG-EGVV 203 (479)
T ss_dssp EEEECCCCC-GGGG
T ss_pred EEECCCcCC-cccc
Confidence 999854433 3444
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=75.01 Aligned_cols=120 Identities=10% Similarity=0.004 Sum_probs=72.8
Q ss_pred HHHHHHHHHhc--CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQ--GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~--~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|..++..... ..+++.|||||+| |.++..+++..+..+|+++|. ++.+.+.+++.+.. .++...+++++.++
T Consensus 80 ~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDi--d~~~i~~a~~~~~~~~~~~~~~~v~~~~~D 157 (304)
T 3bwc_A 80 VYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDI--DGEVMEQSKQHFPQISRSLADPRATVRVGD 157 (304)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred HHHHHHhhhhhhcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHhHHhhcccCCCcEEEEECc
Confidence 35666554321 1245789999999 888888888744689999999 67666677665521 12322689999987
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+.... ...++.|+||+..++.. +. + ..| .| + + ...+.|+|||+++
T Consensus 158 ~~~~~~~-~~~~~fDvIi~d~~~~~--~~-~-~~l~~~~~-l-~-~~~~~LkpgG~lv 207 (304)
T 3bwc_A 158 GLAFVRQ-TPDNTYDVVIIDTTDPA--GP-A-SKLFGEAF-Y-K-DVLRILKPDGICC 207 (304)
T ss_dssp HHHHHHS-SCTTCEEEEEEECC-------------CCHHH-H-H-HHHHHEEEEEEEE
T ss_pred HHHHHHh-ccCCceeEEEECCCCcc--cc-c-hhhhHHHH-H-H-HHHHhcCCCcEEE
Confidence 6654321 12478999999754321 10 1 111 11 1 1 1234699999775
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=75.94 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=61.7
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||+|+| |..++.+|+. ++..+|+++|. ++...+.+++.++.+|+. +|+++.++..++.. .++.++
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~--s~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~-~~~~~~ 330 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDV--DKMRMKRLKDFVKRMGIK--IVKPLVKDARKAPE-IIGEEV 330 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECS--CHHHHHHHHHHHHHTTCC--SEEEECSCTTCCSS-SSCSSC
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHHcCCC--cEEEEEcChhhcch-hhccCC
Confidence 34567899999999 7776666664 43479999999 676667788888899985 69999887665532 133367
Q ss_pred ccEEEcccccc
Q 044245 480 VDLLIGEPYYF 490 (694)
Q Consensus 480 vDvivsE~~~~ 490 (694)
+|+|++.+=|.
T Consensus 331 fD~Vl~D~Pcs 341 (450)
T 2yxl_A 331 ADKVLLDAPCT 341 (450)
T ss_dssp EEEEEEECCCC
T ss_pred CCEEEEcCCCC
Confidence 99999885443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=77.01 Aligned_cols=126 Identities=16% Similarity=0.110 Sum_probs=85.9
Q ss_pred HHHHHHHHhh---ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH---cCC--
Q 044245 54 RAYRLAIDKM---VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV---NGM-- 125 (694)
Q Consensus 54 ~~y~~ai~~~---~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~---ngl-- 125 (694)
..|.+++... ..+.++||-||.|.|.....+.+... .+|+.||+++.+++.|++.... ..+
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~-----------~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~ 258 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKP-----------KMVTMVEIDQMVIDGCKKYMRKTCGDVLDN 258 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCC-----------SEEEEEESCHHHHHHHHHHCCC----CCSS
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCC-----------ceeEEEccCHHHHHHHHhhchhhhhhhhcc
Confidence 3577777642 23468999999999999999888743 6899999999999999987521 112
Q ss_pred --CCcEEEEeccccccccc-cCCCCCccEEEEccccccccC--CC-----hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 126 --GRNIKVINKRSDELEVG-VDIDSRADILVSEILDSELLG--EG-----LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 126 --~~~I~vi~~~~~~l~~~-~~l~~~~DlIvse~~~~~l~~--e~-----~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
.++++++.+|..+.-.. ....++||+||.++.+...-. .+ .-..+....++.|+|||+++-+...
T Consensus 259 pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s 333 (381)
T 3c6k_A 259 LKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC 333 (381)
T ss_dssp SEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 24699999997654310 011257999999875421111 11 1234566777899999999865443
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00025 Score=73.66 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=59.0
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..|||+||| |.++..+|+.| .+|+++|. ++.+.+.+++.++.+++ ++++++.++..++.
T Consensus 33 ~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi--~~~~~~~a~~~~~~~~~--~~v~~~~~D~~~~~--- 103 (299)
T 2h1r_A 33 KIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDI--DSRMISEVKKRCLYEGY--NNLEVYEGDAIKTV--- 103 (299)
T ss_dssp HHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECS--CHHHHHHHHHHHHHTTC--CCEEC----CCSSC---
T ss_pred HHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEEC--CHHHHHHHHHHHHHcCC--CceEEEECchhhCC---
Confidence 33444444567899999999 99999988874 69999999 67666778887777887 47999998766553
Q ss_pred cCCccccEEEccc
Q 044245 475 TQQKKVDLLIGEP 487 (694)
Q Consensus 475 l~~~~vDvivsE~ 487 (694)
..+.|+||+.+
T Consensus 104 --~~~~D~Vv~n~ 114 (299)
T 2h1r_A 104 --FPKFDVCTANI 114 (299)
T ss_dssp --CCCCSEEEEEC
T ss_pred --cccCCEEEEcC
Confidence 24789999984
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0002 Score=71.63 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=52.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc------CCcccccEEEeeccccc-ccccccC
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP------NCFSIDRVEILQKGKKC-LTMDDTQ 476 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~------N~l~~~~i~vi~~~~~~-~~~~~l~ 476 (694)
++..||||||| |.+++..|+.....+|+++|. ++.+.++|++.++. +++ .+|+++.++..+ +. ..++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDi--s~~~l~~A~~~~~~l~~~~~~~~--~nv~~~~~d~~~~l~-~~~~ 120 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEI--RVKVSDYVQDRIRALRAAPAGGF--QNIACLRSNAMKHLP-NFFY 120 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEES--CHHHHHHHHHHHHHHHHSTTCCC--TTEEEEECCTTTCHH-HHCC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHHHHHHHHHHhcCC--CeEEEEECcHHHhhh-hhCC
Confidence 45689999999 877777777643578999999 66655566655442 566 479999998765 32 1133
Q ss_pred CccccEEEc
Q 044245 477 QKKVDLLIG 485 (694)
Q Consensus 477 ~~~vDvivs 485 (694)
...+|.|+.
T Consensus 121 ~~~~D~v~~ 129 (235)
T 3ckk_A 121 KGQLTKMFF 129 (235)
T ss_dssp TTCEEEEEE
T ss_pred CcCeeEEEE
Confidence 467888764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00023 Score=64.69 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=60.2
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCC-HHHHHHHH-HcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTG-LLSMMAAR-AMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG-~lsl~aa~-~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
+...+.|.+...++.+|||||||+| ..+..+++ .| ..|+|+|+|+.+++ +
T Consensus 23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g------------~~V~atDInp~Av~----------------~ 74 (153)
T 2k4m_A 23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSK------------VDLVLTDIKPSHGG----------------I 74 (153)
T ss_dssp HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSC------------CEEEEECSSCSSTT----------------E
T ss_pred HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCC------------CeEEEEECCccccc----------------e
Confidence 3456666666666789999999999 59999997 55 48999999987765 6
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHH
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHD 175 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~ 175 (694)
+..|..+... ++-+.||+|.+ +-....+.+.++...+
T Consensus 75 v~dDiF~P~~--~~Y~~~DLIYs-----irPP~El~~~i~~lA~ 111 (153)
T 2k4m_A 75 VRDDITSPRM--EIYRGAALIYS-----IRPPAEIHSSLMRVAD 111 (153)
T ss_dssp ECCCSSSCCH--HHHTTEEEEEE-----ESCCTTTHHHHHHHHH
T ss_pred EEccCCCCcc--cccCCcCEEEE-----cCCCHHHHHHHHHHHH
Confidence 7777766332 11147999964 1223445666665554
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00036 Score=66.47 Aligned_cols=69 Identities=9% Similarity=-0.039 Sum_probs=50.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.++..+++.| .+|+++|. ++.+.+.+++.. .+++++.+...++. ++.+++|+|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~--~~~~~~~a~~~~-------~~~~~~~~d~~~~~---~~~~~~D~i 111 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQG--HDVLGTDL--DPILIDYAKQDF-------PEARWVVGDLSVDQ---ISETDFDLI 111 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHC-------TTSEEEECCTTTSC---CCCCCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCC--CcEEEEcC--CHHHHHHHHHhC-------CCCcEEEcccccCC---CCCCceeEE
Confidence 67799999999 98888888885 48999999 665555554432 24777887665543 334789999
Q ss_pred Eccc
Q 044245 484 IGEP 487 (694)
Q Consensus 484 vsE~ 487 (694)
++-+
T Consensus 112 ~~~~ 115 (195)
T 3cgg_A 112 VSAG 115 (195)
T ss_dssp EECC
T ss_pred EECC
Confidence 9973
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00042 Score=68.68 Aligned_cols=77 Identities=6% Similarity=-0.038 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
.+.+.|.+.. .+++.|||+||| |.++...++.| . +|+++|. ++.+.+.+++. + .+++++.+..+++
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~-~-~v~~~D~--s~~~~~~a~~~-----~--~~~~~~~~d~~~~ 95 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF-G-DTAGLEL--SEDMLTHARKR-----L--PDATLHQGDMRDF 95 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH-S-EEEEEES--CHHHHHHHHHH-----C--TTCEEEECCTTTC
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC-C-cEEEEeC--CHHHHHHHHHh-----C--CCCEEEECCHHHc
Confidence 3444455544 356799999999 98888888886 4 9999999 66555555442 2 3578888876654
Q ss_pred cccccCCccccEEEc
Q 044245 471 TMDDTQQKKVDLLIG 485 (694)
Q Consensus 471 ~~~~l~~~~vDvivs 485 (694)
.. +++.|+|++
T Consensus 96 ~~----~~~~D~v~~ 106 (239)
T 3bxo_A 96 RL----GRKFSAVVS 106 (239)
T ss_dssp CC----SSCEEEEEE
T ss_pred cc----CCCCcEEEE
Confidence 32 468999994
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00045 Score=72.96 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=62.9
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.+|.+|||+||++|.++..+++.|+ +|+|||.. +|...+ . .. .+|+++++|...+...
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~------------~V~aVD~~-~l~~~l----~--~~-~~V~~~~~d~~~~~~~ 267 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRNM------------WVYSVDNG-PMAQSL----M--DT-GQVTWLREDGFKFRPT 267 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTTC------------EEEEECSS-CCCHHH----H--TT-TCEEEECSCTTTCCCC
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCCC------------EEEEEEhh-hcChhh----c--cC-CCeEEEeCccccccCC
Confidence 467899999999999999999999975 99999975 332222 1 12 3899999998876542
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN 181 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~ 181 (694)
..++|+|+|++... ...+.....++|..+
T Consensus 268 ---~~~~D~vvsDm~~~-------p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 268 ---RSNISWMVCDMVEK-------PAKVAALMAQWLVNG 296 (375)
T ss_dssp ---SSCEEEEEECCSSC-------HHHHHHHHHHHHHTT
T ss_pred ---CCCcCEEEEcCCCC-------hHHhHHHHHHHHhcc
Confidence 25799999975432 333444444555554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=78.79 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=63.6
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
...++..|||+||| |-.++.+|+. ++..+|+|+|. ++.+.+.+++.++.+|+ . |+++.++.+++... + +++
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDi--s~~~l~~a~~n~~r~G~--~-v~~~~~Da~~l~~~-~-~~~ 170 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV--DGKRVRGLLENVERWGA--P-LAVTQAPPRALAEA-F-GTY 170 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECS--CHHHHHHHHHHHHHHCC--C-CEEECSCHHHHHHH-H-CSC
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEEC--CHHHHHHHHHHHHHcCC--e-EEEEECCHHHhhhh-c-ccc
Confidence 34467899999999 8777766654 43569999999 77667788999999998 4 89998877665421 1 468
Q ss_pred ccEEEccccccCCcccc
Q 044245 480 VDLLIGEPYYFGNDGML 496 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l 496 (694)
+|+|++.+=|.+ +|++
T Consensus 171 FD~Il~D~PcSg-~G~~ 186 (464)
T 3m6w_A 171 FHRVLLDAPCSG-EGMF 186 (464)
T ss_dssp EEEEEEECCCCC-GGGT
T ss_pred CCEEEECCCcCC-cccc
Confidence 999998754433 3444
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00036 Score=71.75 Aligned_cols=44 Identities=7% Similarity=-0.157 Sum_probs=33.7
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVAD 451 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~ 451 (694)
++..||||||| |.+++++++.+ ..+|++++. ++.+.+.+++.++
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~--s~~~l~~a~~~~~ 115 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDF--LEVNRQELGRWLQ 115 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECS--CHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcChHHHHhhccC-CCeEEEeCC--CHHHHHHHHHHHh
Confidence 56789999999 88888777754 469999999 6666666665443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0004 Score=72.34 Aligned_cols=78 Identities=5% Similarity=-0.152 Sum_probs=53.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC------cccccEEEeeccccccccc-ccC
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC------FSIDRVEILQKGKKCLTMD-DTQ 476 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~------l~~~~i~vi~~~~~~~~~~-~l~ 476 (694)
++..|||+||| |.++...++.+ ..+|+++|. ++.+.+.+++....++ .. .+++++.++.+++... .++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 109 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDI--ADVSVKQCQQRYEDMKNRRDSEYI-FSAEFITADSSKELLIDKFR 109 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHHHSSSCC-CC-CEEEEEECCTTTSCSTTTCS
T ss_pred CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeC--CHHHHHHHHHHHHHhhhccccccc-ceEEEEEecccccchhhhcc
Confidence 56789999999 87777677664 679999999 6655556665554431 22 4799999987765421 121
Q ss_pred --CccccEEEcc
Q 044245 477 --QKKVDLLIGE 486 (694)
Q Consensus 477 --~~~vDvivsE 486 (694)
.++.|+|++-
T Consensus 110 ~~~~~fD~V~~~ 121 (313)
T 3bgv_A 110 DPQMCFDICSCQ 121 (313)
T ss_dssp STTCCEEEEEEE
T ss_pred cCCCCEEEEEEe
Confidence 3479999985
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.35 E-value=9.1e-05 Score=74.90 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=63.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..|++..+ ..+|+++|+...+...+... .....++..+..+.....+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~g----------v~sV~GvdvG~d~~~~pi~~---~~~g~~ii~~~~~~dv~~l-- 152 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKN----------VKKVMAFTLGVQGHEKPIMR---TTLGWNLIRFKDKTDVFNM-- 152 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTT----------EEEEEEECCCCTTSCCCCCC---CBTTGGGEEEECSCCGGGS--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC----------CCeeeeEEeccCcccccccc---ccCCCceEEeeCCcchhhc--
Confidence 56778999999999999999886543 36899999875532222110 0112233334333322222
Q ss_pred CCCCCccEEEEccccccccCCChHH-----HHHHHHHhccCCC--CeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIP-----TLQHAHDRLLVEN--PLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~-----~l~~~~~~~L~p~--G~iiP 186 (694)
.++++|+|+|++..+ .+....+ .+++....+|+|| |.++-
T Consensus 153 -~~~~~DvVLSDmApn--sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 153 -EVIPGDTLLCDIGES--SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp -CCCCCSEEEECCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred -CCCCcCEEEecCccC--CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 236899999986544 2211112 2455566799999 88763
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00081 Score=71.23 Aligned_cols=76 Identities=11% Similarity=-0.048 Sum_probs=55.6
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
++.||||||| |.++...++.....+++.++. ..+. +.+++.++.+++. ++|+++.++..+... ..++.+|+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~-~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL--PTTR-DAARKTIHAHDLG-GRVEFFEKNLLDARN--FEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC--GGGH-HHHHHHHHHTTCG-GGEEEEECCTTCGGG--GTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC--HHHH-HHHHHHHHhcCCC-CceEEEeCCcccCcc--cCCCCccEEE
Confidence 6799999999 887777777633468888877 4443 4667778888887 899999997654431 1246699999
Q ss_pred ccc
Q 044245 485 GEP 487 (694)
Q Consensus 485 sE~ 487 (694)
+-.
T Consensus 254 ~~~ 256 (352)
T 3mcz_A 254 LND 256 (352)
T ss_dssp EES
T ss_pred Eec
Confidence 853
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00077 Score=65.09 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=53.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.|||+||| |.++..+|+.| +.+|+++|. ++.+.+.+++.++ +++++.++.+++ +++.|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~--~~~~~~~a~~~~~-------~~~~~~~d~~~~------~~~~D~ 113 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDI--DPDAIETAKRNCG-------GVNFMVADVSEI------SGKYDT 113 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEES--CHHHHHHHHHHCT-------TSEEEECCGGGC------CCCEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEEC--CHHHHHHHHHhcC-------CCEEEECcHHHC------CCCeeE
Confidence 357799999999 99999999985 889999999 7766666665443 478888876653 267999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
||+.|
T Consensus 114 v~~~~ 118 (200)
T 1ne2_A 114 WIMNP 118 (200)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99985
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00038 Score=74.90 Aligned_cols=89 Identities=9% Similarity=0.048 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCC---------------------------------------ce
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKT---------------------------------------AH 430 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a---------------------------------------~~ 430 (694)
+...++|.......++..|||++|| |-+++-||+.+ + .+
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~-~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIG-INMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHH-TTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHH-hhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 3455666666555567889999999 88888888874 3 36
Q ss_pred EEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 431 VLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 431 V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
|+++|. ++.+.++|++.++.||++ +.|++++++..++.. +++.|+||+-|
T Consensus 260 V~GvDi--d~~ai~~Ar~Na~~~gl~-~~i~~~~~D~~~l~~----~~~~D~Iv~NP 309 (385)
T 3ldu_A 260 IYGYDI--DEESIDIARENAEIAGVD-EYIEFNVGDATQFKS----EDEFGFIITNP 309 (385)
T ss_dssp EEEEES--CHHHHHHHHHHHHHHTCG-GGEEEEECCGGGCCC----SCBSCEEEECC
T ss_pred EEEEEC--CHHHHHHHHHHHHHcCCC-CceEEEECChhhcCc----CCCCcEEEECC
Confidence 999999 777788999999999998 899999998776643 46799999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 694 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-39 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-14 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 7e-36 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 4e-11 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-31 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 6e-08 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 5e-04 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 145 bits (366), Expect = 2e-39
Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 37/304 (12%)
Query: 43 YLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTK 100
+ +ML D R YR ++ + K VLD+G+GTG+L M AA+A
Sbjct: 8 HEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARK--------- 58
Query: 101 GMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160
V E + K++ N + + +I + +E+E + DI++SE +
Sbjct: 59 --VIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE---LPVEKVDIIISEWMGYC 112
Query: 161 LLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHL 220
L E ++ T+ HA D+ L + L P R T Y +E + D
Sbjct: 113 LFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFD---- 168
Query: 221 VPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFW--KRPDSHGEAELQIKST 278
M I V ++ + +L++ I E D + K D + ++
Sbjct: 169 ----MSCIKDVAIKEPLVDV---VDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVK 221
Query: 279 DDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEE 337
+ VHA+V+++ ++ R +ST+P + HWKQ V+++ +++ GEE
Sbjct: 222 RNDYVHALVAYFNIEFTRCHKRTGFSTSP-----ESPYTHWKQTVFYME-DYLTVKTGEE 275
Query: 338 LLFH 341
+
Sbjct: 276 IFGT 279
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.1 bits (176), Expect = 2e-14
Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 24/221 (10%)
Query: 451 DPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKER--- 507
+ + S V+I++ K + + K ++ + L +
Sbjct: 63 ECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTV 122
Query: 508 -SKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSL-SKIEGFDHAVVNTSLGACGDL 565
D L+ + +I P + L AI + + + GFD +
Sbjct: 123 LHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFD-------------M 169
Query: 566 PAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSK---PISPCQGKVQVEFTEPGLCHGF 622
KD + ++N + E D ++ H
Sbjct: 170 SCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHAL 229
Query: 623 ALWIDWVLD-SENSIVISTGPD--KRYWKQGVKLMAKPVAV 660
+ + ST P+ +WKQ V M + V
Sbjct: 230 VAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTV 270
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 135 bits (341), Expect = 7e-36
Identities = 61/304 (20%), Positives = 125/304 (41%), Gaps = 35/304 (11%)
Query: 43 YLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTK 100
+ +ML D+ R +YR AI + + K VLD+G GTG+LSM AA+
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKH--------- 63
Query: 101 GMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160
V + ++++ K+++ +NG I ++ + +++ + + DI++SE +
Sbjct: 64 --VIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLP---FPKVDIIISEWMGYF 117
Query: 161 LLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHL 220
LL E ++ T+ +A D LVE L P + + + +E + Y + D
Sbjct: 118 LLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDY--- 174
Query: 221 VPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPDSHGEAELQIKSTDD 280
S + + S+ F+ + K D ++ ++ +
Sbjct: 175 ------SPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQ 228
Query: 281 GRVHAVVSWWVLQLDR---EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEE 337
++ +V+W+ + + + +ST P T HWKQ +++ P + G+
Sbjct: 229 DMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYT-----HWKQTIFYFP-DDLDAETGDT 282
Query: 338 LLFH 341
+
Sbjct: 283 IEGE 286
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (151), Expect = 4e-11
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 16/148 (10%)
Query: 519 IIMPFKGILKACAIFCPDIWNSRRSL-SKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFF 577
+I P K + + + + + + GFD++ P
Sbjct: 140 LIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVP---LVLHEPIVDTVERNNVN 196
Query: 578 TWQCGEIKKLSNVFTVMEFDFSKPISPCQGKVQVEFTEPGLCHGFALWIDWVLDSENS-- 635
T I+ N + + F ++ + +G W D V +
Sbjct: 197 TTSDKLIEFDLNTVKISDLAFKSN-------FKLTAKRQDMINGIVTWFDIVFPAPKGKR 249
Query: 636 -IVISTGPD--KRYWKQGVKLMAKPVAV 660
+ STGP +WKQ + +
Sbjct: 250 PVEFSTGPHAPYTHWKQTIFYFPDDLDA 277
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 4e-31
Identities = 61/305 (20%), Positives = 115/305 (37%), Gaps = 38/305 (12%)
Query: 43 YLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTK 100
+ +ML D R +YR I + + K VLD+G GTG+LSM AA+A
Sbjct: 10 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK--------- 60
Query: 101 GMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160
V + ++ ++ +N + I +I + +E+ + D+++SE +
Sbjct: 61 --VLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEVH---LPVEKVDVIISEWMGYF 114
Query: 161 LLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVESTFLWKLHDLYNNEAKALDDIHL 220
LL E ++ ++ +A ++ L + P T V + ++ +
Sbjct: 115 LLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCM 174
Query: 221 VPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKR--PDSHGEAELQIKST 278
A + + L+SEP I D D ++ +K T
Sbjct: 175 KKAVIPEAVVEVLDPK-----------TLISEPCGIKHIDCHTTSISDLEFSSDFTLKIT 223
Query: 279 DDGRVHAVVSWWVLQLDR--EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGE 336
A+ ++ + ++ + +ST P+ HWKQ V+ + K S+ GE
Sbjct: 224 RTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQS-----TKTHWKQTVFLLE-KPFSVKAGE 277
Query: 337 ELLFH 341
L
Sbjct: 278 ALKGK 282
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 6e-08
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 20/180 (11%)
Query: 486 EPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDIWNSRRSL- 544
E + ++ + K + +K + P + A+ + R +
Sbjct: 109 EWMGYFLLFESMLDSVLYAKNKYL-----AKGGSVYPDICTISLVAVSDVNKHADRIAFW 163
Query: 545 SKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPISP 604
+ GF + + ++ +P P K + T D
Sbjct: 164 DDVYGFKMSCMKKAV-----IPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLE----- 213
Query: 605 CQGKVQVEFTEPGLCHGFALWIDW--VLDSENSIVISTGPDKRY--WKQGVKLMAKPVAV 660
++ T +C A + D + N +V STGP WKQ V L+ KP +V
Sbjct: 214 FSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSV 273
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 40.1 bits (93), Expect = 5e-04
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 50 SYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESY 109
S N R+ + K+ V+D+ AG G LS+ A K V A E
Sbjct: 91 SPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAV-----------YGKAKVIAIEKD 139
Query: 110 LPMVKLMKKVLHVNGMGRNIKVIN 133
K + + +H+N + + N
Sbjct: 140 PYTFKFLVENIHLNKVEDRMSAYN 163
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 694 | |||
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.47 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.45 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.45 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.43 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.43 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.42 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.4 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.4 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.37 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.36 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.36 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.35 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.33 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.31 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.3 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.24 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.24 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.23 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.22 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.21 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.2 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.19 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.19 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.19 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.19 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.18 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.16 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.16 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.15 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.13 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.12 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.11 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.1 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.08 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.08 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.06 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.06 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.04 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.04 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.04 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.04 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.01 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.01 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.99 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.98 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.97 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.97 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.96 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.95 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.95 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.95 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.94 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.94 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.93 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.91 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.89 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.85 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.81 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.78 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.78 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.74 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.73 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.73 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.69 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.67 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.65 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.55 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.55 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.52 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.51 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.46 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.46 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.45 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.44 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.41 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.41 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.39 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.39 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.36 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.34 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.34 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.31 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.3 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.3 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.29 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.25 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.23 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.22 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.22 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.21 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.2 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.2 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.19 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.19 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.17 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.15 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.14 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.14 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.13 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.13 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.11 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.11 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.09 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.07 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.05 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.03 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.03 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.03 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.02 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.01 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.01 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.01 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.99 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.99 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.99 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.98 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 97.98 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.93 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 97.92 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.92 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.91 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.91 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.89 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.88 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.8 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.76 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.76 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.71 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.7 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.7 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.69 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.6 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.58 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.53 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.45 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.44 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 97.41 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.39 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.37 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 97.36 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.35 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.32 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.28 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.24 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.24 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.22 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.21 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.19 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.12 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.12 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.08 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.06 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.06 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.03 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 96.94 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.8 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.62 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.61 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.57 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.49 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 96.28 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.14 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 95.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.9 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.82 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.79 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 95.75 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 95.75 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.72 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 95.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.67 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.64 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 95.42 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 95.38 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.3 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.27 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.19 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.17 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.04 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 95.03 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.02 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.91 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 94.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.74 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.68 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.36 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.25 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.24 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.17 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.75 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.33 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.04 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.98 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.85 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.44 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.2 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.8 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.61 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.46 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.34 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.13 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 91.12 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 90.94 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.91 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.59 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 90.38 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.88 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.63 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 89.54 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 88.86 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.77 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.74 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.66 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 88.66 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 88.44 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 88.12 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.83 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 87.75 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.51 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 87.15 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.44 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 86.42 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 85.37 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 85.26 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 84.82 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.74 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.7 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.31 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 84.2 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 83.74 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 83.16 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 83.1 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.98 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 82.45 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 81.54 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.34 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 81.02 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.37 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 80.2 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.7e-46 Score=394.50 Aligned_cols=260 Identities=17% Similarity=0.178 Sum_probs=217.4
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccccc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDR 459 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~ 459 (694)
..||||..|+++|++||.++...++|++||||||| |+||++|||+| |++|+++|. ++++ ..++++++.||+. ++
T Consensus 9 ~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~--s~~~-~~a~~~~~~n~~~-~~ 83 (316)
T d1oria_ 9 EEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIEC--SSIS-DYAVKIVKANKLD-HV 83 (316)
T ss_dssp HHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEEC--STTH-HHHHHHHHHTTCT-TT
T ss_pred HHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcC--cHHH-hhhhhHHHHhCCc-cc
Confidence 47999999999999999998877899999999999 99999999996 999999999 6665 4567889999998 99
Q ss_pred EEEeecccccccccccCCccccEEEcccc--ccCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChhh
Q 044245 460 VEILQKGKKCLTMDDTQQKKVDLLIGEPY--YFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPDI 537 (694)
Q Consensus 460 i~vi~~~~~~~~~~~l~~~~vDvivsE~~--~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~l 537 (694)
|+++++.+++++. +.+++|+|++|++ ++..|++++ ..+ .++ +++|+|||+|+|+++++|++||++..+
T Consensus 84 v~~~~~~~~~~~~---~~~~~D~ivs~~~~~~l~~e~~~~-~~l---~~~---~r~Lkp~G~iiP~~~~~~~~~v~~~~~ 153 (316)
T d1oria_ 84 VTIIKGKVEEVEL---PVEKVDIIISEWMGYCLFYESMLN-TVL---HAR---DKWLAPDGLIFPDRATLYVTAIEDRQY 153 (316)
T ss_dssp EEEEESCTTTCCC---SSSCEEEEEECCCBBTBTBTCCHH-HHH---HHH---HHHEEEEEEEESCEEEEEEEEECCHHH
T ss_pred cceEeccHHHccc---ccceeEEEeeeeeeeeeccHHHHH-HHH---HHH---HhcCCCCeEEEeeeEEEEEEEecCHHH
Confidence 9999999888764 3578999999974 334455555 333 444 447999999999999999999999999
Q ss_pred hhhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C--CcceeEEEEe
Q 044245 538 WNSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S--PCQGKVQVEF 613 (694)
Q Consensus 538 ~~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~--~~~~~~~~~~ 613 (694)
|..+.. |++++||||++++...... |+..+. .+.+++|+|+.++++||.+.. + .....+++++
T Consensus 154 ~~~~~~~~~~~~g~d~~~~~~~~~~~------------~~v~~~-~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~ 220 (316)
T d1oria_ 154 KDYKIHWWENVYGFDMSCIKDVAIKE------------PLVDVV-DPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQV 220 (316)
T ss_dssp HHHHTTTTTCBTTBCCHHHHHHHHTS------------CEEECC-CGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEB
T ss_pred Hhhhcccccccccccchhhhhhhccc------------cEEEEe-cCceEeeCCEEeEEEcCCCCcccCccEEEEEEEee
Confidence 999876 6899999999999865321 111111 135789999999999999865 3 3456788899
Q ss_pred cCCeeeeEEEEEEEEEecCC-CcEEEecCCC--CCceeeeEEecCcceeccccCCCCC
Q 044245 614 TEPGLCHGFALWIDWVLDSE-NSIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 614 ~~~g~~~g~~~Wfd~~~~~~-~~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
+++|+||||++|||+.|++. +.+.+||+|. .+||+|++|+|++|+.|++||.+.|
T Consensus 221 ~~~g~~hg~~~wFd~~l~~~~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~ 278 (316)
T d1oria_ 221 KRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFG 278 (316)
T ss_dssp CSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred cCCceEEEEEEEEEEEeeCCCCCeEEECCCCcCCCceecEEEEcCCceEcCCCCEEEE
Confidence 99999999999999999864 3578999997 4799999999999999999997765
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-45 Score=386.29 Aligned_cols=259 Identities=18% Similarity=0.197 Sum_probs=215.3
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 380 RIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 380 ~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
+..||||..|+++|++||.++...++|++||||||| |+|||+|||+| |++|+|+|. ++.+.. +++.++.||+. +
T Consensus 10 h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~--s~~~~~-a~~~~~~~~~~-~ 84 (311)
T d2fyta1 10 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQ--SEILYQ-AMDIIRLNKLE-D 84 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEES--STHHHH-HHHHHHHTTCT-T
T ss_pred HHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeC--HHHHHH-HHHHHHHhCCC-c
Confidence 357999999999999999999988899999999999 99999999996 999999999 676654 56677888987 9
Q ss_pred cEEEeecccccccccccCCccccEEEcccccc--CCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChh
Q 044245 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPYYF--GNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPD 536 (694)
Q Consensus 459 ~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~--~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~ 536 (694)
+|+++++.++++.. +.+++|+||||+++. ..|++++ ..+ .+++ ++|+|||+++|+++++|++||++..
T Consensus 85 ~i~~~~~~~~~l~~---~~~~~D~Ivse~~~~~~~~e~~~~-~~~---~a~~---~~Lkp~G~iip~~~~~~~~~v~~~~ 154 (311)
T d2fyta1 85 TITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLD-SVL---YAKN---KYLAKGGSVYPDICTISLVAVSDVN 154 (311)
T ss_dssp TEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHH-HHH---HHHH---HHEEEEEEEESCEEEEEEEEECCHH
T ss_pred cceEEEeeHHHhcC---ccccceEEEEeeeeeecccccccH-HHH---HHHH---hcCCCCcEEeccccceEEEEecCHH
Confidence 99999999888764 357999999997543 3345555 323 4444 4799999999999999999999999
Q ss_pred hhhhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C--CcceeEEEE
Q 044245 537 IWNSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S--PCQGKVQVE 612 (694)
Q Consensus 537 l~~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~--~~~~~~~~~ 612 (694)
+|.++.+ |++++||||+++++..... |+..+. .+.++||+|+.++++||.+.. . ..+..++++
T Consensus 155 ~~~~~~~~~~~~~G~d~~~~~~~~~~~------------~~~~~~-~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~ 221 (311)
T d2fyta1 155 KHADRIAFWDDVYGFKMSCMKKAVIPE------------AVVEVL-DPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLK 221 (311)
T ss_dssp HHHHHTGGGGCBTTBCCGGGHHHHTTB------------CEEECC-CGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred HHHhhhccccccccccccchhhccccc------------cEEEec-ChhheecCCEeEEEeccCcCccccccEEEEEEee
Confidence 9988765 7899999999999864321 111221 135789999999999999865 3 345678899
Q ss_pred ecCCeeeeEEEEEEEEEecCC--CcEEEecCCC--CCceeeeEEecCcceeccccCCC
Q 044245 613 FTEPGLCHGFALWIDWVLDSE--NSIVISTGPD--KRYWKQGVKLMAKPVAVGFEESG 666 (694)
Q Consensus 613 ~~~~g~~~g~~~Wfd~~~~~~--~~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~ 666 (694)
++++|+||||++|||+.|+.+ +.+.+||+|. .+||+|++++|++|+.|++||.+
T Consensus 222 ~~~~g~~~g~~~Wfd~~f~~~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~gd~l 279 (311)
T d2fyta1 222 ITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEAL 279 (311)
T ss_dssp BCSCEEEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEE
T ss_pred ecCCcceEEEEEEEEEEEECCCCCceEEeCCCCcCCCccccEEEEeCCceEeCCCCEE
Confidence 999999999999999999753 3588999997 58999999999999999999954
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.8e-45 Score=385.00 Aligned_cols=261 Identities=17% Similarity=0.206 Sum_probs=218.5
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 380 RIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 380 ~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
+..||||..|+++|++||.++...++|++||||||| |+||++||++| |++|+++|. ++++ ..++++++.||+. +
T Consensus 13 h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~--s~~~-~~a~~~~~~~~~~-~ 87 (328)
T d1g6q1_ 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDM--SSII-EMAKELVELNGFS-D 87 (328)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEES--STHH-HHHHHHHHHTTCT-T
T ss_pred HHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeC--CHHH-HHHHHHHHHhCcc-c
Confidence 367999999999999999999887899999999999 99999999997 999999999 6765 5778899999998 9
Q ss_pred cEEEeecccccccccccCCccccEEEccccc--cCCccccCcchhhHHHHHhhcccccCCCceEEcceEEEEEEEccChh
Q 044245 459 RVEILQKGKKCLTMDDTQQKKVDLLIGEPYY--FGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGILKACAIFCPD 536 (694)
Q Consensus 459 ~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~--~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~l~~~~v~~~~ 536 (694)
+|+++++.++++.. +.+++|+|++|++. +.+|++++ ..+ .+++ ++|||||+|+|+++++|++||++++
T Consensus 88 ~i~~i~~~~~~l~~---~~~~~D~i~se~~~~~~~~e~~~~-~~~---~a~~---r~LkpgG~iiP~~~~~~~~~v~~~~ 157 (328)
T d1g6q1_ 88 KITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMD-TVL---YARD---HYLVEGGLIFPDKCSIHLAGLEDSQ 157 (328)
T ss_dssp TEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHH-HHH---HHHH---HHEEEEEEEESCEEEEEEEEECCHH
T ss_pred cceEEEeehhhccC---cccceeEEEEEecceeeccchhHH-HHH---HHHH---hccCCCeEEEeeecceeeecccCHH
Confidence 99999998887754 45899999999753 34455555 333 4444 4799999999999999999999999
Q ss_pred hhhhcCC-CCcccccccccchhhhhhcCCCCCCCCCCCCCccccccccccccCCceeEEEEeCCCCC-C--CcceeEEEE
Q 044245 537 IWNSRRS-LSKIEGFDHAVVNTSLGACGDLPAPKDGPCLPFFTWQCGEIKKLSNVFTVMEFDFSKPI-S--PCQGKVQVE 612 (694)
Q Consensus 537 l~~~~~~-~~~v~G~d~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~~l~~~d~~~~~-~--~~~~~~~~~ 612 (694)
+|.++.. |+++|||||++++...... |++.+. .+.++++.|..+..+||.+.. . .+...++++
T Consensus 158 l~~~~~~~~~~~~G~d~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (328)
T d1g6q1_ 158 YKDEKLNYWQDVYGFDYSPFVPLVLHE------------PIVDTV-ERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLT 224 (328)
T ss_dssp HHHHHHHHTTCBTTBCCTTHHHHHTTS------------CEEECC-CGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred HHHHhccccccccccccchhhhhhccC------------cEEEEe-cCceeecCceeEEEecccccchhhcceeeeEEEE
Confidence 9998865 8999999999999865321 112211 135789999999999999875 2 455678899
Q ss_pred ecCCeeeeEEEEEEEEEecCCC---cEEEecCCC--CCceeeeEEecCcceeccccCCCCC
Q 044245 613 FTEPGLCHGFALWIDWVLDSEN---SIVISTGPD--KRYWKQGVKLMAKPVAVGFEESGRT 668 (694)
Q Consensus 613 ~~~~g~~~g~~~Wfd~~~~~~~---~~~lst~P~--~~hW~Q~v~~l~~p~~v~~g~~~~~ 668 (694)
++++|+||||++|||+.|+... .+.+||+|. .|||+|++++|++|+.|++||.+.|
T Consensus 225 ~~~~g~~hg~~~wFd~~l~~~~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~ 285 (328)
T d1g6q1_ 225 AKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEG 285 (328)
T ss_dssp BCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEE
T ss_pred ecCCcEEEEEEEEEEEEccCCCCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCCCEEEE
Confidence 9999999999999999998643 378999997 4799999999999999999997654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-43 Score=367.13 Aligned_cols=271 Identities=22% Similarity=0.290 Sum_probs=227.3
Q ss_pred chHHHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 41 TSYLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 41 ~~~~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
.-|.+|++|..|+++|++||.+. +.++++|||||||+|+++++||++|+ .+|+|+|.|+.|. .|++
T Consensus 8 ~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-----------~~V~aid~s~~~~-~a~~ 75 (311)
T d2fyta1 8 GIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-----------KKVLGVDQSEILY-QAMD 75 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEEESSTHHH-HHHH
T ss_pred hHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-----------CEEEEEeCHHHHH-HHHH
Confidence 34889999999999999999874 56799999999999999999999987 6999999998876 4667
Q ss_pred HHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecc
Q 044245 119 VLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVES 198 (694)
Q Consensus 119 ~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~ 198 (694)
++++|++.++|+++++++.++..+ .++||+|++|++++++.+|+.++.++++++++|+|||+++|+.+++|++|+++
T Consensus 76 ~~~~~~~~~~i~~~~~~~~~l~~~---~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~ 152 (311)
T d2fyta1 76 IIRLNKLEDTITLIKGKIEEVHLP---VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD 152 (311)
T ss_dssp HHHHTTCTTTEEEEESCTTTSCCS---CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHhCCCccceEEEeeHHHhcCc---cccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecC
Confidence 788889989999999999998753 26999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCC--CCceeeEEEE
Q 044245 199 TFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPD--SHGEAELQIK 276 (694)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~--~~~~~~~~~~ 276 (694)
..+|...... ....+|+++++. .+.. .+.+. ....++.+.||+|+.+++|||.+... ......++++
T Consensus 153 ~~~~~~~~~~---~~~~~G~d~~~~--~~~~----~~~~~--~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~ 221 (311)
T d2fyta1 153 VNKHADRIAF---WDDVYGFKMSCM--KKAV----IPEAV--VEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLK 221 (311)
T ss_dssp HHHHHHHTGG---GGCBTTBCCGGG--HHHH----TTBCE--EECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred HHHHHhhhcc---ccccccccccch--hhcc----ccccE--EEecChhheecCCEeEEEeccCcCccccccEEEEEEee
Confidence 9998753221 235689998873 2211 01111 12234678999999999999987543 3456778999
Q ss_pred EccCCceeEEEEEEEEeecC--CCcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 277 STDDGRVHAVVSWWVLQLDR--EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 277 ~~~~G~~~g~~~Wf~~~l~~--~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
++++|+||||++||+++|+. ++++.|||+|. .|.+||+|++|+|+ +|+.|++||+|.++++
T Consensus 222 ~~~~g~~~g~~~Wfd~~f~~~~~~~~~lST~P~-----~~~thW~q~~~~l~-~p~~v~~gd~l~~~~~ 284 (311)
T d2fyta1 222 ITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQ-----STKTHWKQTVFLLE-KPFSVKAGEALKGKVT 284 (311)
T ss_dssp BCSCEEEEEEEEEEEEEECTTCSSCEEEECSTT-----SCCCTTCEEEEEEE-EEEEECTTCEEEEEEE
T ss_pred ecCCcceEEEEEEEEEEEECCCCCceEEeCCCC-----cCCCccccEEEEeC-CceEeCCCCEEEEEEE
Confidence 99999999999999998864 35699999996 35679999999996 7999999999998865
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-42 Score=366.08 Aligned_cols=285 Identities=21% Similarity=0.331 Sum_probs=235.0
Q ss_pred chHHHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 41 TSYLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 41 ~~~~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
..|.+|++|..|+++|++||.+. +.++++|||||||+|.++++||++|+ .+|+|+|.|+ +++.|++
T Consensus 11 ~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga-----------~~V~avd~s~-~~~~a~~ 78 (328)
T d1g6q1_ 11 GIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA-----------KHVIGVDMSS-IIEMAKE 78 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC-----------SEEEEEESST-HHHHHHH
T ss_pred hHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCC-----------CEEEEEeCCH-HHHHHHH
Confidence 45889999999999999999763 56899999999999999999999987 6999999985 7899999
Q ss_pred HHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecc
Q 044245 119 VLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVES 198 (694)
Q Consensus 119 ~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~ 198 (694)
+++.|++.++|+++++++.++..+. +++|+|+++++++++.+++.++.++++++++|+|||+++|+++++|++||++
T Consensus 79 ~~~~~~~~~~i~~i~~~~~~l~~~~---~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~ 155 (328)
T d1g6q1_ 79 LVELNGFSDKITLLRGKLEDVHLPF---PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLED 155 (328)
T ss_dssp HHHHTTCTTTEEEEESCTTTSCCSS---SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHhCccccceEEEeehhhccCcc---cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccC
Confidence 9999999999999999999987532 6899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCC--CCCceeeEEEE
Q 044245 199 TFLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRP--DSHGEAELQIK 276 (694)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~--~~~~~~~~~~~ 276 (694)
+.+|+.+.. .....+||+++++ .... .+.+... . ..+...++.|..+..|||.... +......++++
T Consensus 156 ~~l~~~~~~---~~~~~~G~d~~~~--~~~~----~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (328)
T d1g6q1_ 156 SQYKDEKLN---YWQDVYGFDYSPF--VPLV----LHEPIVD-T-VERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLT 224 (328)
T ss_dssp HHHHHHHHH---HTTCBTTBCCTTH--HHHH----TTSCEEE-C-CCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEE
T ss_pred HHHHHHhcc---ccccccccccchh--hhhh----ccCcEEE-E-ecCceeecCceeEEEecccccchhhcceeeeEEEE
Confidence 999875421 1234689998874 2211 1112221 1 2356789999999999998754 34566788999
Q ss_pred EccCCceeEEEEEEEEeecCC---CcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE--ec-----c
Q 044245 277 STDDGRVHAVVSWWVLQLDRE---GTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL--HT-----E 346 (694)
Q Consensus 277 ~~~~G~~~g~~~Wf~~~l~~~---~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~--~d-----~ 346 (694)
+.++|+||||++||+++|+.. .++.|||+|. .|.+||+|++|+|+ +|+.|++||+|.+++. ++ .
T Consensus 225 ~~~~g~~hg~~~wFd~~l~~~~~~~~i~lST~P~-----~~~thW~Q~v~~l~-~pi~v~~gd~i~~~~~~~~~~~~~r~ 298 (328)
T d1g6q1_ 225 AKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPH-----APYTHWKQTIFYFP-DDLDAETGDTIEGELVCSPNEKNNRD 298 (328)
T ss_dssp BCSSCEEEEEEEEEEEECCCCTTSCCCEEECSTT-----SCCCTTCEEEEEEE-EEEECCTTCEEEEEEEEEEETTEEEE
T ss_pred ecCCcEEEEEEEEEEEEccCCCCCCceEEeCCCC-----CCCCceeeEEEEeC-CceEeCCCCEEEEEEEEEECCCCCee
Confidence 999999999999999999864 3588999996 24569999999997 7999999999987754 22 2
Q ss_pred eEEEEEEeeec
Q 044245 347 TSVSYELKSQI 357 (694)
Q Consensus 347 ~~~~~~~~~~~ 357 (694)
..++++|+.+.
T Consensus 299 ~~v~~~~~~~~ 309 (328)
T d1g6q1_ 299 LNIKISYKFES 309 (328)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEe
Confidence 34667766543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.6e-42 Score=363.95 Aligned_cols=270 Identities=24% Similarity=0.358 Sum_probs=226.2
Q ss_pred hHHHhhCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHH
Q 044245 42 SYLDMLNDSYRNRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKV 119 (694)
Q Consensus 42 ~~~~ml~D~~r~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~ 119 (694)
.|..||+|..|+++|++||.+. +.+|++|||||||+|+++++||++|+ .+|+|+|.|+. +..|+++
T Consensus 7 ~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga-----------~~V~avd~s~~-~~~a~~~ 74 (316)
T d1oria_ 7 IHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGA-----------RKVIGIECSSI-SDYAVKI 74 (316)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTC-----------SEEEEEECSTT-HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCC-----------CEEEEEcCcHH-HhhhhhH
Confidence 4789999999999999999753 66899999999999999999999987 68999999865 5778889
Q ss_pred HHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEEEEEecch
Q 044245 120 LHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTYGQLVEST 199 (694)
Q Consensus 120 ~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~ 199 (694)
++.|++.++|+++++++.++..+. +++|+|+++++++++.+|+.++.++++++++|+|||+++|+++++|++||+++
T Consensus 75 ~~~n~~~~~v~~~~~~~~~~~~~~---~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~ 151 (316)
T d1oria_ 75 VKANKLDHVVTIIKGKVEEVELPV---EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDR 151 (316)
T ss_dssp HHHTTCTTTEEEEESCTTTCCCSS---SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHhCCccccceEeccHHHccccc---ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCH
Confidence 999999999999999999987532 68999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCcccccccCCeeeccCCccceeeecccceeeeeccccccceecCCCeEEEEEEcCCCCC--CCceeeEEEEE
Q 044245 200 FLWKLHDLYNNEAKALDDIHLVPAGMDSILHVKSQQYAMHCDAITKEIKLLSEPFKIFEFDFWKRPD--SHGEAELQIKS 277 (694)
Q Consensus 200 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~p~~~~~fdf~~~~~--~~~~~~~~~~~ 277 (694)
.+|+.+... .+..+|+++++. .... ...+. +. ...+.+.||+|+.+++|||.+... ..++..+++++
T Consensus 152 ~~~~~~~~~---~~~~~g~d~~~~--~~~~----~~~~~-v~-~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~ 220 (316)
T d1oria_ 152 QYKDYKIHW---WENVYGFDMSCI--KDVA----IKEPL-VD-VVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQV 220 (316)
T ss_dssp HHHHHHTTT---TTCBTTBCCHHH--HHHH----HTSCE-EE-CCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEB
T ss_pred HHHhhhccc---ccccccccchhh--hhhh----ccccE-EE-EecCceEeeCCEEeEEEcCCCCcccCccEEEEEEEee
Confidence 998764321 235689998763 2211 01111 11 234678999999999999997543 34667789999
Q ss_pred ccCCceeEEEEEEEEeecC-CCcEEecCCCCCCCCCCccCccceeeeecCCCceeecCCCEEEEEEE
Q 044245 278 TDDGRVHAVVSWWVLQLDR-EGTIFYSTAPRWISTGNWCDHWKQCVWFIPGKGMSICKGEELLFHAL 343 (694)
Q Consensus 278 ~~~G~~~g~~~Wf~~~l~~-~~~i~lST~P~~~~~~~w~~hW~Q~v~~l~~~pi~V~~Gd~l~~~~~ 343 (694)
.++|+||||++||+++|+. ++++.|||+|.. + .+||+|++|+|+ +|+.|++||+|.+++.
T Consensus 221 ~~~g~~hg~~~wFd~~l~~~~~~v~lST~P~~--~---~thW~Q~v~~l~-~p~~v~~g~~i~~~i~ 281 (316)
T d1oria_ 221 KRNDYVHALVAYFNIEFTRCHKRTGFSTSPES--P---YTHWKQTVFYME-DYLTVKTGEEIFGTIG 281 (316)
T ss_dssp CSSEEEEEEEEEEEEECTTSSSCCEEECSTTS--C---CCTTCEEEEEEE-EEEEECTTCEEEEEEE
T ss_pred cCCceEEEEEEEEEEEeeCCCCCeEEECCCCc--C---CCceecEEEEcC-CceEcCCCCEEEEEEE
Confidence 9999999999999999985 345889999962 2 349999999996 7999999999996654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.47 E-value=9e-14 Score=137.87 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=86.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+++|.+|||||||+|.++..+++.++ +|+|+|+|+.|++.|+++++.++++ ++.+++++.++++++.
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~------------~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ------------ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPD 80 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS------------EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCT
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC------------eEEEEeCChhhhhhhhhhhcccccc-cccccccccccccccc
Confidence 77899999999999999999999875 8999999999999999999999985 7999999999987643
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|+|...-. +-...+.++..+.++|+|||+++-
T Consensus 81 ---~~fD~v~~~~~l~---~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 81 ---DSFDIITCRYAAH---HFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp ---TCEEEEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cccceeeeeceee---cccCHHHHHHHHHHeeCCCcEEEE
Confidence 6899999842221 112256677777889999998754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.9e-13 Score=136.42 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=88.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||+|.+++.+++..+ .+|+|+|.|+.|++.|+++++.+|++++|+++.+++.++..
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~-----------~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~-- 97 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHG-----------ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-- 97 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTC-----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcC-----------CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc--
Confidence 77899999999999999999988754 59999999999999999999999999999999999988732
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
+++||+|+|...-.++ .-.+.++..+.++|+|||+++...
T Consensus 98 --~~~fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 98 --NEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp --SSCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCceeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEEEe
Confidence 3689999985332222 124667777888999999998653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.45 E-value=9.3e-14 Score=132.92 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=85.6
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++.+|||||||+|.+++.+|+.+ .+|+|+|.++.|++.|+++++++|+.++|++++++..+...+
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~------------~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~ 97 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRV------------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK 97 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS------------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT
T ss_pred CCCCCCEEEEEECCeEcccccccccc------------eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc
Confidence 36789999999999999999999875 499999999999999999999999999999999998876532
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+.||+|++.... ...+.+.+...++|+|||+++
T Consensus 98 ---~~~~D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 98 ---IPDIDIAVVGGSG------GELQEILRIIKDKLKPGGRII 131 (186)
T ss_dssp ---SCCEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEE
T ss_pred ---cCCcCEEEEeCcc------ccchHHHHHHHHHhCcCCEEE
Confidence 2689999985321 225566777777999999986
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=1.6e-13 Score=139.69 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=110.0
Q ss_pred CCCCCCCccccccccc-----hHHHhhCC---HHHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCcc
Q 044245 26 NEDVPESSQEPLLATT-----SYLDMLND---SYRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTS 96 (694)
Q Consensus 26 ~~~~p~~~~~~~l~~~-----~~~~ml~D---~~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~ 96 (694)
|||.+.++|..++... .|+.--.+ ..-.+++...+.++ +.+|.+|||||||+|.++..+++..+
T Consensus 3 HYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g------- 75 (280)
T d2fk8a1 3 HYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD------- 75 (280)
T ss_dssp GGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-------
T ss_pred CccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc-------
Confidence 6888888887766643 22322222 12233455556554 77899999999999999999998854
Q ss_pred CCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHh
Q 044245 97 LNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDR 176 (694)
Q Consensus 97 ~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~ 176 (694)
.+|+|+++|+++++.|++.++..|+.+++.+...+..++ +++||.|+|-.+- ..+++...+.++..+.+
T Consensus 76 ----~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~------~~~fD~i~si~~~-eh~~~~~~~~~f~~i~~ 144 (280)
T d2fk8a1 76 ----VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------AEPVDRIVSIEAF-EHFGHENYDDFFKRCFN 144 (280)
T ss_dssp ----CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------CCCCSEEEEESCG-GGTCGGGHHHHHHHHHH
T ss_pred ----eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh------ccchhhhhHhhHH-HHhhhhhHHHHHHHHHh
Confidence 599999999999999999999999998999988776654 3689999984332 22344556788888889
Q ss_pred ccCCCCeEEcCceE
Q 044245 177 LLVENPLTVPCRVT 190 (694)
Q Consensus 177 ~L~p~G~iiP~~~~ 190 (694)
+|+|||+++-+..+
T Consensus 145 ~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 145 IMPADGRMTVQSSV 158 (280)
T ss_dssp HSCTTCEEEEEEEE
T ss_pred ccCCCceEEEEEee
Confidence 99999999876543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.8e-13 Score=136.84 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVI 132 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi 132 (694)
++...+++.+...++++|||+|||+|.+++.+++.|+ +|+|+|+|+.|++.|++|++.|++. ++++
T Consensus 107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~------------~V~gvDis~~av~~A~~na~~n~~~--~~~~ 172 (254)
T d2nxca1 107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG------------KALGVDIDPMVLPQAEANAKRNGVR--PRFL 172 (254)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCGGGHHHHHHHHHHTTCC--CEEE
T ss_pred hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCC------------EEEEEECChHHHHHHHHHHHHcCCc--eeEE
Confidence 5667788888888999999999999999999999875 8999999999999999999999995 5678
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++..+... .++||+|+++++.. .+..+...+.+.|+|||+++-
T Consensus 173 ~~d~~~~~~----~~~fD~V~ani~~~------~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 173 EGSLEAALP----FGPFDLLVANLYAE------LHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp ESCHHHHGG----GCCEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecccccccc----ccccchhhhccccc------cHHHHHHHHHHhcCCCcEEEE
Confidence 888765321 26899999975432 355666777789999999874
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=2.2e-13 Score=136.15 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=85.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++++|||||||+|.++..++++|. +|+|+|.|+.|++.|+++++.+++ ++++++++++++++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~~------------~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-- 102 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERGY------------EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-- 102 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC--
T ss_pred CCCCCEEEEeCCCCCccchhhcccce------------EEEEEeeccccccccccccccccc--cchheehhhhhccc--
Confidence 34467999999999999999999875 899999999999999999998887 69999999999864
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
+++||+|++..-....+.......++..+.++|+|||+++.+-
T Consensus 103 --~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 103 --KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp --CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 3689999984211122222234466777788999999998653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.43 E-value=3.2e-13 Score=133.20 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=87.0
Q ss_pred HHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 59 AIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 59 ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
.++.+ ++++.+|||||||+|.++..+++.++ +|+|+|+|+.|++.|+++++.++.+ ++++++++++
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~------------~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~ 73 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK------------KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAE 73 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS------------EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhCC------------EEEEEECCHHHHhhhhhcccccccc-cccccccccc
Confidence 34433 67889999999999999999998875 8999999999999999999999985 8999999999
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++++. ++||+|++.-.-.++ + -...++..+.++|+|||+++-
T Consensus 74 ~l~~~~---~~fD~v~~~~~l~~~--~-d~~~~l~~~~r~LkpgG~l~i 116 (231)
T d1vl5a_ 74 QMPFTD---ERFHIVTCRIAAHHF--P-NPASFVSEAYRVLKKGGQLLL 116 (231)
T ss_dssp CCCSCT---TCEEEEEEESCGGGC--S-CHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccc---ccccccccccccccc--C-CHHHHHHHHHHhcCCCcEEEE
Confidence 987533 689999985322221 2 255666677789999998774
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.42 E-value=3.4e-13 Score=132.12 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=89.2
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
......+.+.+.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. ++.++.
T Consensus 25 ~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~------------~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~ 90 (226)
T d1ve3a1 25 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF------------EVVGVDISEDMIRKAREYAKSRES--NVEFIV 90 (226)
T ss_dssp HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTC--CCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhc------------ccccccccccchhhhhhhhccccc--cccccc
Confidence 334555667778889999999999999999999874 899999999999999999887774 578889
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++..+++.+. +.||+|++.-+-.++ ...-+..++..+.++|+|||+++-
T Consensus 91 ~d~~~l~~~~---~~fD~I~~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 91 GDARKLSFED---KTFDYVIFIDSIVHF-EPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp CCTTSCCSCT---TCEEEEEEESCGGGC-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccC---cCceEEEEecchhhC-ChhHHHHHHHHHHHHcCcCcEEEE
Confidence 9999886532 689999985322221 112344566777789999998764
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=4.5e-13 Score=136.75 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=112.1
Q ss_pred eEeccCCCCCCCcccccccc-----chHHHhhCCH---HHHHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCC
Q 044245 21 VVIEENEDVPESSQEPLLAT-----TSYLDMLNDS---YRNRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSS 91 (694)
Q Consensus 21 ~~~~~~~~~p~~~~~~~l~~-----~~~~~ml~D~---~r~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~ 91 (694)
+.+..|||.+.++|..++.. ..|++--.+. .-.+++...+.++ +.+|.+|||||||.|.+++.+|+..+
T Consensus 7 ~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-- 84 (291)
T d1kpia_ 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-- 84 (291)
T ss_dssp HHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--
T ss_pred hHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--
Confidence 34566799999998877664 2344322222 2223344455554 77899999999999999998887654
Q ss_pred CCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEE-cccccccc-----CCC
Q 044245 92 DSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVS-EILDSELL-----GEG 165 (694)
Q Consensus 92 ~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvs-e~~~~~l~-----~e~ 165 (694)
.+|+|+++|+..++.|++.++..|+.+++.+...+.... +++||.|+| |.+.+..- +..
T Consensus 85 ---------~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~------~~~fD~i~sie~~eH~~~~~~~~~~~ 149 (291)
T d1kpia_ 85 ---------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFE 149 (291)
T ss_dssp ---------CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCCSTT
T ss_pred ---------cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc------ccccceEeechhHHhcchhhhhhHHH
Confidence 599999999999999999999999999999988776542 378999998 33332211 113
Q ss_pred hHHHHHHHHHhccCCCCeEEcCceE
Q 044245 166 LIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 166 ~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+.++..+.++|+|||+++-+..+
T Consensus 150 ~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 150 RYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp HHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEe
Confidence 4678888899999999999866544
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.40 E-value=8.2e-13 Score=134.70 Aligned_cols=106 Identities=17% Similarity=0.083 Sum_probs=88.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|+++.+..|+.++|++++++..+++++.
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~-----------~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFG-----------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-----------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCC-----------cEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 56789999999999999999998754 4899999999999999999999999999999999999987533
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|++...-.++ .-...++..+.++|+|||+++-
T Consensus 134 ---~sfD~V~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~~ 170 (282)
T d2o57a1 134 ---NSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAI 170 (282)
T ss_dssp ---TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cccchhhccchhhhc---cCHHHHHHHHHHhcCCCcEEEE
Confidence 689999984322222 2355677777889999999873
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.40 E-value=3.4e-13 Score=134.63 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=86.7
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+.+.+...++++|||||||+|.++..++++|. +|+|+|.|+.|++.|+++++.+++ +++++++|+.
T Consensus 29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~------------~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~ 94 (246)
T d1y8ca_ 29 EKCVENNLVFDDYLDLACGTGNLTENLCPKFK------------NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDIS 94 (246)
T ss_dssp HHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS------------EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGG
T ss_pred HHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC------------ccEeeccchhhhhhccccccccCc--cceeeccchh
Confidence 33444444568999999999999999999975 899999999999999999988887 6999999999
Q ss_pred ccccccCCCCCccEEEEc--cccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 138 ELEVGVDIDSRADILVSE--ILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse--~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++.. +++||+|+|- .+.+ +.....+..++..+.++|+|||.++-
T Consensus 95 ~~~~----~~~fD~i~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 95 NLNI----NRKFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCC----SCCEEEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhcc----cccccccceeeeeeec-cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 8753 4689999972 2221 22233455677788889999999884
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.37 E-value=2.3e-13 Score=125.75 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+|++|||+|||||.+++.|+.+|+ .+|+++|.++.+++.++++++.+++.++++++++|..+... ..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-----------~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~--~~ 80 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-----------SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID--CL 80 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-----------CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH--HB
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-----------ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc--cc
Confidence 589999999999999999999987 69999999999999999999999999999999999877431 23
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHH--HhccCCCCeEEcC
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAH--DRLLVENPLTVPC 187 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~--~~~L~p~G~iiP~ 187 (694)
.++||+|+.+|..... .....++.+ .++|+|+|.++..
T Consensus 81 ~~~fDiIf~DPPy~~~----~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 81 TGRFDLVFLDPPYAKE----TIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp CSCEEEEEECCSSHHH----HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccceeEechhhccc----hHHHHHHHHHHCCCcCCCeEEEEE
Confidence 4789999999875322 223333322 3579999988643
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.36 E-value=2.1e-12 Score=126.97 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=91.1
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
...+.+.+.++.+|||||||+|.++..+++... .+..+|+|+|.|+.|++.|+++++..+...++.++.++.
T Consensus 30 ~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~--------~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~ 101 (225)
T d1im8a_ 30 GMLAERFVTADSNVYDLGCSRGAATLSARRNIN--------QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI 101 (225)
T ss_dssp HHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCC--------CSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT
T ss_pred HHHHHHhcCCCCEEEEeccchhhHHHHHHHhhc--------CCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh
Confidence 344455677899999999999999999998642 124699999999999999999999888888899999888
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+++. +++|+|++....++ +.......++..+.+.|+|||.++-
T Consensus 102 ~~~~~-----~~~d~i~~~~~l~~-~~~~d~~~~l~~i~~~LkpgG~li~ 145 (225)
T d1im8a_ 102 RHVEI-----KNASMVILNFTLQF-LPPEDRIALLTKIYEGLNPNGVLVL 145 (225)
T ss_dssp TTCCC-----CSEEEEEEESCGGG-SCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hcccc-----ccceeeEEeeeccc-cChhhHHHHHHHHHHhCCCCceeec
Confidence 77653 57899888544333 3334455777777889999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.36 E-value=1.2e-12 Score=131.17 Aligned_cols=113 Identities=15% Similarity=0.048 Sum_probs=90.1
Q ss_pred HHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccc
Q 044245 60 IDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 60 i~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l 139 (694)
|.+.+.++++|||||||+|..+..+++.+. .+|+|+|+|+.|++.|+++.+..+...++.++.+|+...
T Consensus 18 I~~~~~~~~~VLDlGCG~G~~~~~~~~~~~-----------~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~ 86 (252)
T d1ri5a_ 18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGI-----------GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 86 (252)
T ss_dssp HHHHCCTTCEEEEETCTTTTTHHHHHHHTC-----------SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred HHHhCCCcCEEEEecccCcHHHHHHHHcCC-----------CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh
Confidence 455677899999999999998889898875 689999999999999999998888877999999998665
Q ss_pred ccccCCCCCccEEEEcccccccc-CCChHHHHHHHHHhccCCCCeEE
Q 044245 140 EVGVDIDSRADILVSEILDSELL-GEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 140 ~~~~~l~~~~DlIvse~~~~~l~-~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.. +..++||+|++...-.+.. .+..+..++..+.++|+|||.++
T Consensus 87 ~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i 131 (252)
T d1ri5a_ 87 HM--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 131 (252)
T ss_dssp CC--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cc--cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEE
Confidence 43 2346899999864333322 23345667777888999999876
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=2e-12 Score=131.46 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=110.6
Q ss_pred EeccCCCCCCCccccccccc-----hHHHhhCCHHH---HHHHHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCC
Q 044245 22 VIEENEDVPESSQEPLLATT-----SYLDMLNDSYR---NRAYRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSD 92 (694)
Q Consensus 22 ~~~~~~~~p~~~~~~~l~~~-----~~~~ml~D~~r---~~~y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~ 92 (694)
.+..|||.+.++|..++..+ .|++--.+... .++....++++ +.+|.+|||||||.|.+++.+|+.-+
T Consensus 9 ~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--- 85 (285)
T d1kpga_ 9 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--- 85 (285)
T ss_dssp HHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---
T ss_pred HHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC---
Confidence 45567999888888777653 33432233221 12223333333 67899999999999999998877764
Q ss_pred CCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHH
Q 044245 93 STTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQH 172 (694)
Q Consensus 93 ~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~ 172 (694)
.+|+|+.+|+..++.|++.++..|+.+++++..+|..++ +++||.|+|-.+-- .++..-.+.++.
T Consensus 86 --------~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~------~~~fD~i~si~~~e-h~~~~~~~~~~~ 150 (285)
T d1kpga_ 86 --------VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF------DEPVDRIVSIGAFE-HFGHERYDAFFS 150 (285)
T ss_dssp --------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC------CCCCSEEEEESCGG-GTCTTTHHHHHH
T ss_pred --------cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc------cccccceeeehhhh-hcCchhHHHHHH
Confidence 699999999999999999999999999999999998765 36899998832221 223344567788
Q ss_pred HHHhccCCCCeEEcCceE
Q 044245 173 AHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 173 ~~~~~L~p~G~iiP~~~~ 190 (694)
.+.++|+|||+++-+..+
T Consensus 151 ~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 151 LAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp HHHHHSCTTCEEEEEEEE
T ss_pred HHHhhcCCCCcEEEEEEe
Confidence 888899999999865543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.33 E-value=1.4e-12 Score=125.38 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=84.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEeccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVG 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~ 142 (694)
+.++.+|||+|||+|.+++.+++.++ +|+++|.|+.+++.|+++++.|++.. +++++.+|..+. .
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~------------~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-~- 115 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVK------------STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-V- 115 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSS------------EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-C-
T ss_pred cCCCCeEEEEeecCChhHHHHHhhcc------------ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-h-
Confidence 45689999999999999999998764 89999999999999999999999864 699999998762 2
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+++||+|+++++.+. +....+.+++...++|+|||+++
T Consensus 116 --~~~~fD~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 116 --KDRKYNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp --TTSCEEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCCceEEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEE
Confidence 1368999999876422 23345667777788999999875
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.31 E-value=1e-11 Score=119.50 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|..++.++++|. +|+|+|+|+.|++.|++.++..+++ ++.+...+..++..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~------------~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~---- 92 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY------------DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF---- 92 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC----
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh------------hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc----
Confidence 356999999999999999999985 8999999999999999999999986 79999999887653
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++...-.+ +.....+.++..+.++|+|||.++-
T Consensus 93 ~~~fD~I~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 93 DGEYDFILSTVVMMF-LEAQTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp CCCEEEEEEESCGGG-SCTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccEEEEeeeeec-CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 368999998544433 2445566777778889999998763
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.5e-12 Score=129.07 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=86.6
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
+..+...+.+|.+|||+|||+|.+++.+|+.++ .+|+|+|.|+.+++.+++|++.||+.++|+++++|.
T Consensus 98 r~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~-----------~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~ 166 (260)
T d2frna1 98 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGK-----------AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN 166 (260)
T ss_dssp HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTC-----------CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT
T ss_pred HHHHHhhcCCccEEEECcceEcHHHHHHHHhCC-----------cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch
Confidence 445666788899999999999999999999875 699999999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~i 184 (694)
.++.. .++||.|+.+++... + ..+..+. ++|++||.+
T Consensus 167 ~~~~~----~~~~D~Ii~~~p~~~---~---~~l~~a~-~~l~~gG~l 203 (260)
T d2frna1 167 RDFPG----ENIADRILMGYVVRT---H---EFIPKAL-SIAKDGAII 203 (260)
T ss_dssp TTCCC----CSCEEEEEECCCSSG---G---GGHHHHH-HHEEEEEEE
T ss_pred HHhcc----CCCCCEEEECCCCch---H---HHHHHHH-hhcCCCCEE
Confidence 88752 257999998755432 1 2222333 478999976
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=8e-12 Score=124.15 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=83.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|.+++.+|++.+ +.++|+++|.++++++.|+++++.++..++|++..+|..+...
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~---------~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~-- 151 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALN---------GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-- 151 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHT---------TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhC---------CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--
Confidence 77899999999999999999999854 3579999999999999999999988777899999999887531
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.||.|+.++... ..++....+.|+|||+++
T Consensus 152 --~~~fD~V~ld~p~p--------~~~l~~~~~~LKpGG~lv 183 (250)
T d1yb2a1 152 --DQMYDAVIADIPDP--------WNHVQKIASMMKPGSVAT 183 (250)
T ss_dssp --SCCEEEEEECCSCG--------GGSHHHHHHTEEEEEEEE
T ss_pred --cceeeeeeecCCch--------HHHHHHHHHhcCCCceEE
Confidence 25799999865442 233445567999999886
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=7.4e-12 Score=124.01 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=77.1
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
.+.+.+.++.+|||||||+|.++..+++.|. +|+|+|.|+.|++.|+++ +.. .++.+++++
T Consensus 35 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------~v~giD~s~~~l~~a~~~----~~~---~~~~~~~~~ 95 (246)
T d2avna1 35 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGF------------EVVLVDPSKEMLEVAREK----GVK---NVVEAKAED 95 (246)
T ss_dssp HHHHHCCSCCEEEEETCTTCHHHHHHHTTTC------------EEEEEESCHHHHHHHHHH----TCS---CEEECCTTS
T ss_pred HHHHhcCCCCEEEEECCCCchhcccccccce------------EEEEeecccccccccccc----ccc---ccccccccc
Confidence 3445567789999999999999999999875 899999999999999864 332 256788888
Q ss_pred cccccCCCCCccEEEEcc-ccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 139 LEVGVDIDSRADILVSEI-LDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~-~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++++ +++||+|++.. +-.++ ++ ...++..+.++|+|||.++-
T Consensus 96 l~~~---~~~fD~ii~~~~~~~~~--~d-~~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 96 LPFP---SGAFEAVLALGDVLSYV--EN-KDKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp CCSC---TTCEEEEEECSSHHHHC--SC-HHHHHHHHHHHEEEEEEEEE
T ss_pred cccc---cccccceeeecchhhhh--hh-HHHHHHHHHhhcCcCcEEEE
Confidence 8653 37899999731 22121 22 44556666789999999874
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.23 E-value=5.2e-12 Score=120.64 Aligned_cols=107 Identities=10% Similarity=-0.090 Sum_probs=80.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC-----------CCcEEEE
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM-----------GRNIKVI 132 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl-----------~~~I~vi 132 (694)
+.++.+|||+|||+|..+..+|++|. +|+|+|+|+.|++.|++.++..+. ...++++
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~------------~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGY------------HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCC------------EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCC------------ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 66889999999999999999999985 999999999999999998864432 1346778
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++..++... ....+|+|++..+..+ +.+.....+...+.++|+|||.++
T Consensus 86 ~~d~~~l~~~--~~~~~D~i~~~~~l~~-l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 86 CGDFFALTAR--DIGHCAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp EECCSSSTHH--HHHSEEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cccccccccc--cccceeEEEEEeeeEe-cchhhhHHHHHHHHHhcCCCcEEE
Confidence 8888776531 1257999988543332 222334556667778999999875
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.7e-11 Score=123.37 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=87.3
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDE 138 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~ 138 (694)
++......+.+|||+|||||.+++.+++..+ +.+|+|+|+|+.+++.|++|++.+++. +|+++++|+.+
T Consensus 101 ~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p----------~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~ 169 (274)
T d2b3ta1 101 ALARLPEQPCRILDLGTGTGAIALALASERP----------DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFS 169 (274)
T ss_dssp HHHHSCSSCCEEEEETCTTSHHHHHHHHHCT----------TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTG
T ss_pred HhhhhcccccceeeeehhhhHHHHHHHhhCC----------cceeeeccchhHHHhHHHHHHHHhCcc-cceeeeccccc
Confidence 4444444567899999999999999999875 579999999999999999999999995 79999999876
Q ss_pred cccccCCCCCccEEEEcccccc----------ccCCC------------hHHHHHHHHHhccCCCCeEEc
Q 044245 139 LEVGVDIDSRADILVSEILDSE----------LLGEG------------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 139 l~~~~~l~~~~DlIvse~~~~~----------l~~e~------------~l~~l~~~~~~~L~p~G~iiP 186 (694)
.. ..++||+|||||.+.- +.+|. .+..+.....++|+|||.++-
T Consensus 170 ~~----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 170 AL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp GG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cc----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 32 1258999999986531 11121 233466666789999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=6.5e-12 Score=123.19 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||||||+|.++..+++.+. .+|++||.|+.|++.|++++...+.. ++++++++++++..+
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~-----------~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~~--- 124 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLF-----------REVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTPE--- 124 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC-----------SEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCCC---
T ss_pred CCCEEEEeccCCCHhhHHHHHhcC-----------CEEEEeecCHHHhhcccccccccccc-ccccccccccccccc---
Confidence 467999999999999988766654 58999999999999999998887764 789999999998642
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++||+|++..+-.+ +.+..+..++..+.++|+|||.++-
T Consensus 125 ~~~fD~I~~~~~l~h-~~~~~~~~~l~~i~~~Lk~~G~~~i 164 (222)
T d2ex4a1 125 PDSYDVIWIQWVIGH-LTDQHLAEFLRRCKGSLRPNGIIVI 164 (222)
T ss_dssp SSCEEEEEEESCGGG-SCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccc-chhhhhhhHHHHHHHhcCCcceEEE
Confidence 378999998533322 2222344567777889999998863
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=1.2e-11 Score=128.31 Aligned_cols=123 Identities=23% Similarity=0.197 Sum_probs=94.8
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++.+...+.+|.+|||+|||+|.+++.+++.|+ .+|+++|.|+.+++.|++|++.||+.++++++++|.
T Consensus 136 r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga-----------~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~ 204 (324)
T d2as0a2 136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGA-----------DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA 204 (324)
T ss_dssp HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred HHHHHhhcCCCCeeecccCcccchhhhhhhcCC-----------cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechh
Confidence 556667778899999999999999999999886 699999999999999999999999988999999997
Q ss_pred cccccc-cCCCCCccEEEEccccccccCCCh------HHHHHHHHHhccCCCCeEEcCceE
Q 044245 137 DELEVG-VDIDSRADILVSEILDSELLGEGL------IPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 137 ~~l~~~-~~l~~~~DlIvse~~~~~l~~e~~------l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
.+.... ....++||+|++++.....-.... ...+....-++|+|||+++-..++
T Consensus 205 ~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 205 FEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 654210 012368999999986543221111 223445555799999998865544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.19 E-value=2e-11 Score=122.03 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=83.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc--CCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN--GMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n--gl~~~I~vi~~~~~~l~~ 141 (694)
+.+|.+|||+|||+|.+++.+|++.+ +.++|+++|.++++++.|+++++.. +..+++.++++|..+..+
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vg---------p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVG---------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhC---------CCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 77899999999999999999999965 3589999999999999999999864 455799999999887654
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+ ++.||.|+.++.+ ....+....+.|+|||+++
T Consensus 165 ~---~~~fDaV~ldlp~--------P~~~l~~~~~~LkpGG~lv 197 (264)
T d1i9ga_ 165 P---DGSVDRAVLDMLA--------PWEVLDAVSRLLVAGGVLM 197 (264)
T ss_dssp C---TTCEEEEEEESSC--------GGGGHHHHHHHEEEEEEEE
T ss_pred c---CCCcceEEEecCC--------HHHHHHHHHhccCCCCEEE
Confidence 3 3689999986443 2234445567999999875
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.1e-11 Score=116.54 Aligned_cols=114 Identities=18% Similarity=0.075 Sum_probs=82.1
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK 134 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~ 134 (694)
+....+...+.++.+|||+|||+|.+++.++++|+ +|+++|.|+.+++.+++|++.+++.+++.....
T Consensus 30 ~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga------------~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~ 97 (171)
T d1ws6a1 30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW------------EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV 97 (171)
T ss_dssp HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC------------EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred HHHHHhhccccCCCeEEEeccccchhhhhhhhccc------------hhhhcccCHHHHhhhhHHHHhhccccceeeeeh
Confidence 33444555567899999999999999999999986 799999999999999999999999877665544
Q ss_pred cccccccccCCCCCccEEEEccccccccCCChHHHHHHHH-HhccCCCCeEE
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAH-DRLLVENPLTV 185 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~-~~~L~p~G~ii 185 (694)
+...... ....++||+|+++|.+..- ....+.... ..+|+|||+++
T Consensus 98 d~~~~~~-~~~~~~fD~If~DPPY~~~----~~~~l~~l~~~~ll~~~g~iv 144 (171)
T d1ws6a1 98 EVFLPEA-KAQGERFTVAFMAPPYAMD----LAALFGELLASGLVEAGGLYV 144 (171)
T ss_dssp HHHHHHH-HHTTCCEEEEEECCCTTSC----TTHHHHHHHHHTCEEEEEEEE
T ss_pred hcccccc-cccCCccceeEEccccccC----HHHHHHHHHHcCCcCCCeEEE
Confidence 4221110 1123689999999875322 222222222 35899999876
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1.9e-11 Score=119.01 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=79.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||+|.++..+|+..+ +.++|+++|.++.+++.|+++++..++. ++.++.++..+....
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~---------~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~~- 141 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVG---------EKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE- 141 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-
T ss_pred ccccceEEEecCccchhHHHHHHHhC---------CCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHcccc-
Confidence 78899999999999999999998765 2479999999999999999999999986 788899887765432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||+|++.. .+ +.+.+. +.+.|+|||+++
T Consensus 142 --~~~fD~I~~~~----~~-~~~p~~----l~~~LkpGG~lv 172 (213)
T d1dl5a1 142 --FSPYDVIFVTV----GV-DEVPET----WFTQLKEGGRVI 172 (213)
T ss_dssp --GCCEEEEEECS----BB-SCCCHH----HHHHEEEEEEEE
T ss_pred --ccchhhhhhhc----cH-HHhHHH----HHHhcCCCcEEE
Confidence 25799999842 11 222232 345799999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.5e-11 Score=120.55 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=81.4
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC----CcEEEE
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG----RNIKVI 132 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~----~~I~vi 132 (694)
.+++...+.+|.+|||||||+|.++..+|+... +.++|+++|.++++++.|+++++..++. ++++++
T Consensus 67 le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~---------~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~ 137 (224)
T d1i1na_ 67 LELLFDQLHEGAKALDVGSGSGILTACFARMVG---------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 137 (224)
T ss_dssp HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhC---------CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence 344444567899999999999999999888754 2479999999999999999999877653 479999
Q ss_pred eccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 133 NKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 133 ~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+|....... ...||.|++.. .+. ...+ .+.+.|+|||+++
T Consensus 138 ~gD~~~~~~~---~~~fD~I~~~~----~~~-~ip~----~l~~~LkpGG~LV 178 (224)
T d1i1na_ 138 VGDGRMGYAE---EAPYDAIHVGA----AAP-VVPQ----ALIDQLKPGGRLI 178 (224)
T ss_dssp ESCGGGCCGG---GCCEEEEEECS----BBS-SCCH----HHHHTEEEEEEEE
T ss_pred Eeecccccch---hhhhhhhhhhc----chh-hcCH----HHHhhcCCCcEEE
Confidence 9997765432 25899999742 222 2222 3446899999986
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.18 E-value=1.9e-11 Score=124.29 Aligned_cols=114 Identities=14% Similarity=0.220 Sum_probs=87.7
Q ss_pred HHHHHHHHhh---ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 54 RAYRLAIDKM---VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 54 ~~y~~ai~~~---~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
+.|.+.+.+. +.++.+|||||||+|.++..+++..+ ...+|+|+|.|+.|++.|+++.+..+. +++
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~---------~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~ 80 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLP---------EGSKYTGIDSGETLLAEARELFRLLPY--DSE 80 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSC---------TTCEEEEEECCHHHHHHHHHHHHSSSS--EEE
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCC---------CCCEEEEEecchhHhhhhhcccccccc--ccc
Confidence 4455655443 45678999999999999999988654 135899999999999999999987775 699
Q ss_pred EEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 131 VINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 131 vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
++.+|..+++. +++||+|++..+-.++ .-...++..+.+.|+|||.++
T Consensus 81 f~~~d~~~~~~----~~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~li 128 (281)
T d2gh1a1 81 FLEGDATEIEL----NDKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKII 128 (281)
T ss_dssp EEESCTTTCCC----SSCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccccccc----cCCceEEEEehhhhcC---CCHHHHHHHHHHHcCcCcEEE
Confidence 99999988753 3589999985433222 225566777778999999876
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=2.7e-11 Score=123.84 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC--
Q 044245 52 RNRAYRLAIDKMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR-- 127 (694)
Q Consensus 52 r~~~y~~ai~~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-- 127 (694)
|.+.|...+...+ ..+.+|||||||+|.++..++++|. +|+|+|.|+.|++.|+++...++...
T Consensus 40 r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~------------~v~gvD~S~~ml~~A~~~~~~~~~~~~~ 107 (292)
T d1xvaa_ 40 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF------------SVTSVDASDKMLKYALKERWNRRKEPAF 107 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTTSHHH
T ss_pred hHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC------------eeeeccCchHHHHHHHHHHHhccccccc
Confidence 3344445444433 3467999999999999999999875 89999999999999999988776541
Q ss_pred -cEEEEeccccccccccCCCCCccEEEEcc--ccccccC---CChHHHHHHHHHhccCCCCeEEc
Q 044245 128 -NIKVINKRSDELEVGVDIDSRADILVSEI--LDSELLG---EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 128 -~I~vi~~~~~~l~~~~~l~~~~DlIvse~--~~~~l~~---e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+..+...++..+.......++||+|++-. +.+.... ......++..+.++|+|||+++-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 108 DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp HTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 33444555544332111236899998732 2221111 11245567777889999999975
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.16 E-value=7.6e-11 Score=114.25 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||+|..+..+++..+ .++|+|+|+++.|++.|+++++..+ ++.++.++........
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~----------~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~ 120 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVD----------EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS 120 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT----------TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhcc----------CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc
Confidence 67899999999999999999998864 4699999999999999999987754 7999999988766544
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.....+|++++++ ........++....++|+|||.++
T Consensus 121 ~~~~~vd~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~ 157 (209)
T d1nt2a_ 121 GIVEKVDLIYQDI-----AQKNQIEILKANAEFFLKEKGEVV 157 (209)
T ss_dssp TTCCCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceEEEEEecc-----cChhhHHHHHHHHHHHhccCCeEE
Confidence 3345677776532 223345566666778999999886
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.15 E-value=6e-11 Score=116.40 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=78.4
Q ss_pred HHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 57 RLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 57 ~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
.+++.+.. ++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++. .+++++++++.
T Consensus 12 ~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g~------------~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~ 73 (225)
T d2p7ia1 12 VRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFN------------DITCVEASEEAISHAQGRL-----KDGITYIHSRF 73 (225)
T ss_dssp HHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCS------------CEEEEESCHHHHHHHHHHS-----CSCEEEEESCG
T ss_pred HHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcCC------------eEEEEeCcHHHhhhhhccc-----ccccccccccc
Confidence 34455544 467899999999999999998875 7999999999999998653 34799999998
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++.. +++||+|++.-+-.++ ++....+....+++|+|||.++
T Consensus 74 ~~~~~----~~~fD~I~~~~vleh~--~d~~~~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 74 EDAQL----PRRYDNIVLTHVLEHI--DDPVALLKRINDDWLAEGGRLF 116 (225)
T ss_dssp GGCCC----SSCEEEEEEESCGGGC--SSHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccc----ccccccccccceeEec--CCHHHHHHHHHHHhcCCCceEE
Confidence 88653 4789999984322222 3334444455558999999887
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=5.9e-11 Score=119.20 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=82.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|.+++.+|++.+ +.++|+++|.++++++.|+++++..++.+++.+..++..+..
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~---------~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~--- 168 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVG---------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF--- 168 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTT---------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhC---------CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc---
Confidence 78899999999999999999999865 357999999999999999999999999889999888865421
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
....+|.|+.++.+ .+.++..+.+.|+|||+++
T Consensus 169 -~~~~~D~V~~d~p~--------p~~~l~~~~~~LKpGG~lv 201 (266)
T d1o54a_ 169 -DEKDVDALFLDVPD--------PWNYIDKCWEALKGGGRFA 201 (266)
T ss_dssp -SCCSEEEEEECCSC--------GGGTHHHHHHHEEEEEEEE
T ss_pred -cccceeeeEecCCC--------HHHHHHHHHhhcCCCCEEE
Confidence 12579998875433 3344555667999999986
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.4e-11 Score=117.16 Aligned_cols=109 Identities=11% Similarity=0.012 Sum_probs=81.8
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
...+|.+|||||||+|..+..+++.++ .+|++||+|+.|++.|+++.+..+ .++.++.+++..+...
T Consensus 50 ~~~~g~~VLdIGcG~G~~a~~~a~~~~-----------~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~ 116 (229)
T d1zx0a1 50 ASSKGGRVLEVGFGMAIAASKVQEAPI-----------DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT 116 (229)
T ss_dssp HTTTCEEEEEECCTTSHHHHHHHTSCE-----------EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred hccCCCeEEEeeccchHHHHHHHHcCC-----------CeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccc
Confidence 345688999999999999999988764 589999999999999999887655 3688888887665421
Q ss_pred cCCCCCccEEEEccccccccCCC--hHHHHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEG--LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~--~l~~l~~~~~~~L~p~G~ii 185 (694)
...++||.|+.+........+. ..+.++..+.++|+|||+++
T Consensus 117 -~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~ 160 (229)
T d1zx0a1 117 -LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160 (229)
T ss_dssp -SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred -cccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEE
Confidence 1236899998765444332232 24456666778999999885
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.11 E-value=1.8e-10 Score=117.27 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=95.6
Q ss_pred HHhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 44 LDMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 44 ~~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
....-|..-|..+.+.......++.+|||++||||.+++.+++.|+ +|++||.|+.+++.|++|++.|
T Consensus 110 tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA------------~V~~VD~s~~al~~a~~N~~ln 177 (309)
T d2igta1 110 VGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA------------EVTHVDASKKAIGWAKENQVLA 177 (309)
T ss_dssp CSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC------------EEEEECSCHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC------------eEEEEeChHHHHHHHHHhhhhh
Confidence 3444455545444443333455689999999999999999998876 8999999999999999999999
Q ss_pred CCCC-cEEEEeccccccccc-cCCCCCccEEEEccccccccC-------CChHHHHHHHHHhccCCCCeEE
Q 044245 124 GMGR-NIKVINKRSDELEVG-VDIDSRADILVSEILDSELLG-------EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 124 gl~~-~I~vi~~~~~~l~~~-~~l~~~~DlIvse~~~~~l~~-------e~~l~~l~~~~~~~L~p~G~ii 185 (694)
|+.+ +++++++|+.++.-. ....++||+||+++.....-. +..+..+......+|+|||.++
T Consensus 178 ~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 178 GLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp TCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred cccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 9975 699999998764210 011268999999986543211 2234566677788999998755
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.10 E-value=2e-10 Score=114.71 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=93.6
Q ss_pred HHHhhCCHHHHHHHHHHHHhh-------------ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCC
Q 044245 43 YLDMLNDSYRNRAYRLAIDKM-------------VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESY 109 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~-------------~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s 109 (694)
|..+-.|....+.|.+++... +.+.++|||||||+|.++..++++.+ ..+++++|.
T Consensus 44 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p----------~~~~~~~D~- 112 (253)
T d1tw3a2 44 YEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAP----------HVSATVLEM- 112 (253)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-
T ss_pred HHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcc----------eeEEEEccC-
Confidence 344556777677777665431 12358999999999999999999975 468999998
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 110 LPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 110 ~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++++.+++++...++.++|+++.+|..+. .+.+||+|++..+-+.+ .+.....++..+.+.|+|||+++
T Consensus 113 ~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-----~~~~~D~v~~~~vlh~~-~d~~~~~~L~~~~~~LkPGG~l~ 182 (253)
T d1tw3a2 113 AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-----LPRKADAIILSFVLLNW-PDHDAVRILTRCAEALEPGGRIL 182 (253)
T ss_dssp TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CSSCEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcccchhhccccchhh-----cccchhheeeccccccC-CchhhHHHHHHHHHhcCCCcEEE
Confidence 789999999999999999999999997652 24679999875332221 12223355666778999999886
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.9e-10 Score=109.00 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+|||++||||.+++.|+.+|+ .+|+.||.|+.+++.+++|++.++.. +++++.+|+.++.. ..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-----------~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~--~~ 108 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-----------AGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLA--QK 108 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-----------SEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHS--SC
T ss_pred chhhhhhhhccccceeeeEEecCc-----------ceeEEEEEeechhhHHHHHHhhcccc-ceeeeeeccccccc--cc
Confidence 578999999999999999999997 69999999999999999999988875 78999999776532 23
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHH--hccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHD--RLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~--~~L~p~G~ii 185 (694)
.++||+|+.+|.+. ....+.++..+. .+|+++|.++
T Consensus 109 ~~~fDlIf~DPPY~----~~~~~~~l~~l~~~~~L~~~~iIi 146 (183)
T d2fpoa1 109 GTPHNIVFVDPPFR----RGLLEETINLLEDNGWLADEALIY 146 (183)
T ss_dssp CCCEEEEEECCSSS----TTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccccCEEEEcCccc----cchHHHHHHHHHHCCCCCCCeEEE
Confidence 46899999998753 334454444443 4688887765
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=4e-10 Score=108.41 Aligned_cols=75 Identities=28% Similarity=0.220 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
+|++|||+|||||.+++.+++.|+ .+|+|+|+++.+++.|++|++.++. +++++.++..++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-----------~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~------ 106 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-----------KEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF------ 106 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC------
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-----------CEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh------
Confidence 589999999999999999999886 6999999999999999999988876 588888887664
Q ss_pred CCCccEEEEccccc
Q 044245 146 DSRADILVSEILDS 159 (694)
Q Consensus 146 ~~~~DlIvse~~~~ 159 (694)
+++||+|++++...
T Consensus 107 ~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 107 NSRVDIVIMNPPFG 120 (201)
T ss_dssp CCCCSEEEECCCCS
T ss_pred CCcCcEEEEcCccc
Confidence 36899999998753
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.08 E-value=1.4e-10 Score=116.04 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=83.9
Q ss_pred HHHHHHHhhc-cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 044245 55 AYRLAIDKMV-TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVIN 133 (694)
Q Consensus 55 ~y~~ai~~~~-~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~ 133 (694)
..+.+++... .++.+|||+|||+|.++..+++.+. .+|+++|.|+.|++.|+++... . .++++++
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-----------~~v~~vD~s~~~l~~a~~~~~~--~-~~~~~~~ 146 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-----------ATTDLLEPVKHMLEEAKRELAG--M-PVGKFIL 146 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-----------SEEEEEESCHHHHHHHHHHTTT--S-SEEEEEE
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-----------ceEEEEcCCHHHHHhhhccccc--c-ccceeEE
Confidence 3445555543 3467999999999999988776654 5899999999999999977542 2 3689999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++.++.+. +++||+|++..+-.++ .+..+..++..+.++|+|||.++
T Consensus 147 ~d~~~~~~~---~~~fD~I~~~~vl~hl-~d~d~~~~l~~~~~~LkpgG~ii 194 (254)
T d1xtpa_ 147 ASMETATLP---PNTYDLIVIQWTAIYL-TDADFVKFFKHCQQALTPNGYIF 194 (254)
T ss_dssp SCGGGCCCC---SSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccC---CCccceEEeecccccc-chhhhHHHHHHHHHhcCCCcEEE
Confidence 999988653 3689999996544333 22234456667778999999887
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.06 E-value=2.4e-10 Score=112.19 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=76.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||||||+|..+..+|+.++ .++|+|+|+|+.|++.|+++++.+ .++..+.++........
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~----------~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~ 138 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIAD----------KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA 138 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT----------TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCC----------CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc
Confidence 56799999999999999999999874 479999999999999998876554 36778888877655322
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+....+|++++. +........++...+++|+|||.++
T Consensus 139 ~~~~~v~~i~~~-----~~~~~~~~~~l~~~~r~LKpgG~~~ 175 (230)
T d1g8sa_ 139 NIVEKVDVIYED-----VAQPNQAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp TTCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceeEEeecc-----ccchHHHHHHHHHHHHhcccCceEE
Confidence 222334444432 2223345666677788999999865
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.6e-10 Score=118.98 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=79.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc----------CCCCcEEEEe
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN----------GMGRNIKVIN 133 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n----------gl~~~I~vi~ 133 (694)
+.+|.+|||+|||+|.+++.+|++.+ +.++|+++|.++++++.|+++++.. +..+++.+++
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg---------~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVG---------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred CCCCCEEEEecccccHHHHHHHHHhC---------CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 78899999999999999999999865 3579999999999999999999853 4567999999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|+.+...+ .....||.|+.++... . ..+....+.|+|||+++
T Consensus 167 ~di~~~~~~-~~~~~fD~V~LD~p~P----~----~~l~~~~~~LKpGG~lv 209 (324)
T d2b25a1 167 KDISGATED-IKSLTFDAVALDMLNP----H----VTLPVFYPHLKHGGVCA 209 (324)
T ss_dssp SCTTCCC--------EEEEEECSSST----T----TTHHHHGGGEEEEEEEE
T ss_pred cchhhcccc-cCCCCcceEeecCcCH----H----HHHHHHHHhccCCCEEE
Confidence 998765431 1235799999764331 1 23444567999999875
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=3.4e-10 Score=110.75 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=81.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.+|.+|||+|||+|..+..+|+..+ +.++|||+|.++.|++.|+++++..+ ++..+..+........
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG---------~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~ 138 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVG---------WEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYR 138 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGT
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhC---------CCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccccc
Confidence 56899999999999999999999864 35899999999999999998876543 5777777776654322
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.....+|+|+.++. .......++....++|+|||+++.
T Consensus 139 ~~~~~vD~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 139 ALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp TTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccceEEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEE
Confidence 33467899887532 234455667777789999998863
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1e-09 Score=109.76 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
..+|+|+|||+|.+++.+++.. +.+|+|+|+|+.++++|++|++.+++.+++.+..+++.+... ...
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~-----------~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~--~~~ 177 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFS-----------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK--EKF 177 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-----------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG--GGT
T ss_pred ccEEEEeeeeeehhhhhhhhcc-----------cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc--ccc
Confidence 4689999999999999988753 379999999999999999999999999999999999876432 223
Q ss_pred CCccEEEEccccc--------cccCCC---------hHHHHHHHHHhccCCCCeEEc
Q 044245 147 SRADILVSEILDS--------ELLGEG---------LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 147 ~~~DlIvse~~~~--------~l~~e~---------~l~~l~~~~~~~L~p~G~iiP 186 (694)
++||+|||||.+- ...+|. -+..++..+.++|+|||.++-
T Consensus 178 ~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 178 ASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp TTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 6899999998532 111222 133455556789999997653
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.04 E-value=1.1e-10 Score=110.48 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=83.7
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-c
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-V 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~ 143 (694)
.++.+|||++||||.+++.++.+|+ .+|+++|.|+.+++.+++|++.++..++++++++|+.+.... .
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa-----------~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~ 108 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGM-----------DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY 108 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC-----------SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEcccccccccceeeecch-----------hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhc
Confidence 3589999999999999999999997 699999999999999999999999988999999998764210 1
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHH--HhccCCCCeEEc
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAH--DRLLVENPLTVP 186 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~--~~~L~p~G~iiP 186 (694)
....+||+|+.+|.+.. .....++..+ ..+|+++|.++-
T Consensus 109 ~~~~~fDlIflDPPY~~----~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 109 EEKLQFDLVLLDPPYAK----QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp HTTCCEEEEEECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccCCCcceEEechhhhh----hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 12258999999987532 2233333332 357899988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.4e-10 Score=112.41 Aligned_cols=107 Identities=11% Similarity=-0.098 Sum_probs=82.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC----------------CCC
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG----------------MGR 127 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng----------------l~~ 127 (694)
+.++.+|||+|||+|..+..+|+.|. +|+|+|.|+.|++.|++.....+ ...
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~------------~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGH------------SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG 110 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC------------EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCC------------cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence 45678999999999999999999986 99999999999999987754321 124
Q ss_pred cEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 128 NIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 128 ~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++++++|..++.. ...+.||+|+...+... +.....+.+...+.++|+|||+++
T Consensus 111 ~v~~~~~d~~~l~~--~~~~~fd~i~~~~~l~~-~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 111 NISLYCCSIFDLPR--TNIGKFDMIWDRGALVA-INPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp SEEEEESCGGGGGG--SCCCCEEEEEESSSTTT-SCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred cEEEEEcchhhccc--cccCceeEEEEEEEEEe-ccchhhHHHHHHHHhhcCCcceEE
Confidence 79999999888763 23468999987433322 233445667777788999999875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.01 E-value=2.5e-10 Score=117.46 Aligned_cols=121 Identities=14% Similarity=0.006 Sum_probs=90.7
Q ss_pred HHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC-CcEEEEecccc
Q 044245 59 AIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-RNIKVINKRSD 137 (694)
Q Consensus 59 ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-~~I~vi~~~~~ 137 (694)
.+.+.+.+|++|||++||+|.+|+.+++.|+ .+|+++|.|+.+++.|++|++.|+++ ++++++.+|..
T Consensus 137 ~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga-----------~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~ 205 (317)
T d2b78a2 137 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGA-----------MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF 205 (317)
T ss_dssp HHHHTTTBTCEEEEETCTTTHHHHHHHHTTB-----------SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred HHHHHhhCCCceeecCCCCcHHHHHHHhCCC-----------ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH
Confidence 4445566799999999999999999998876 78999999999999999999999995 58999999986
Q ss_pred cccc-ccCCCCCccEEEEccccccccC---CCh---HHHHHHHHHhccCCCCeEEcCceE
Q 044245 138 ELEV-GVDIDSRADILVSEILDSELLG---EGL---IPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 138 ~l~~-~~~l~~~~DlIvse~~~~~l~~---e~~---l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
+..- .....++||+||.+|....--. ... ...+.....++|+|||.++-..++
T Consensus 206 ~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 206 DYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5421 0112368999999986432111 112 334555666799999998865443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=2.4e-10 Score=117.90 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=85.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-c
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG-V 143 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~-~ 143 (694)
.+|++|||+|||+|.+++.+|+.+ .+|+++|.|+.+++.|+++++.||+. +++++++|..++... .
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~------------~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~ 210 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGF------------REVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLE 210 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHE------------EEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHH
T ss_pred hCCCeeeccCCCCcHHHHHHHhcC------------CcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhH
Confidence 368999999999999999988654 59999999999999999999999995 799999998764210 1
Q ss_pred CCCCCccEEEEccccccccCCCh------HHHHHHHHHhccCCCCeEEcCceE
Q 044245 144 DIDSRADILVSEILDSELLGEGL------IPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~------l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
...++||+|++++.....-.... ...+.....++|+|||+++-..++
T Consensus 211 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 211 KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 12368999999986543322222 223455556789999988754443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.99 E-value=3.2e-10 Score=110.58 Aligned_cols=95 Identities=23% Similarity=0.212 Sum_probs=73.0
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+|+.++ +|+++|.++.+++.|+++... . .++.++.+|...... .
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~~------------~V~aiE~~~~~~~~A~~~~~~--~-~nv~~~~~d~~~g~~-~ 131 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIVD------------KVVSVEINEKMYNYASKLLSY--Y-NNIKLILGDGTLGYE-E 131 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS------------EEEEEESCHHHHHHHHHHHTT--C-SSEEEEESCGGGCCG-G
T ss_pred hcccceEEEecCCCCHHHHHHHHHhc------------ccccccccHHHHHHHHHHHhc--c-cccccccCchhhcch-h
Confidence 78899999999999999999999874 999999999999999987653 3 489999999765321 1
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.++||.|+..- .. +...+. +.+.|+|||+++
T Consensus 132 --~~pfD~Iiv~~----a~-~~ip~~----l~~qLk~GGrLV 162 (224)
T d1vbfa_ 132 --EKPYDRVVVWA----TA-PTLLCK----PYEQLKEGGIMI 162 (224)
T ss_dssp --GCCEEEEEESS----BB-SSCCHH----HHHTEEEEEEEE
T ss_pred --hhhHHHHHhhc----ch-hhhhHH----HHHhcCCCCEEE
Confidence 26799998742 11 223333 335799999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.98 E-value=1.4e-09 Score=104.64 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++..|||||||+|..++.+|+..+ ...++|||+++.++..|.+.++.+++. ||.++++|+..+.. .-.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p----------~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~-~~~ 96 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNP----------DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTD-VFE 96 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT----------TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHH-HCC
T ss_pred CCceEEEEEecCcHHHHHHHHhCC----------CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhc-ccC
Confidence 356899999999999999999975 579999999999999999999999996 89999999887641 112
Q ss_pred CCCccEEEEccccccccCCC-----hHHHHHHHHHhccCCCCeEEc
Q 044245 146 DSRADILVSEILDSELLGEG-----LIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~-----~l~~l~~~~~~~L~p~G~iiP 186 (694)
++.+|.|.........-... +.+.++..+.+.|+|||.++-
T Consensus 97 ~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 97 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence 36789877632221111011 125677788889999998854
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.97 E-value=6.6e-10 Score=105.90 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.|++|||+|||||.+++.+++.|+ .+|+++|+++.+++.|++|+ .+++++.+|+.++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-----------~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l------ 104 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-----------ESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI------ 104 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-----------SEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC------
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-----------CcccccccCHHHHHHHHHcc------ccccEEEEehhhc------
Confidence 589999999999999999999986 68999999999999999864 2678999998765
Q ss_pred CCCccEEEEcccc
Q 044245 146 DSRADILVSEILD 158 (694)
Q Consensus 146 ~~~~DlIvse~~~ 158 (694)
+++||+||+|+..
T Consensus 105 ~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 105 SGKYDTWIMNPPF 117 (197)
T ss_dssp CCCEEEEEECCCC
T ss_pred CCcceEEEeCccc
Confidence 3689999999864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.97 E-value=4.6e-10 Score=108.75 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=77.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||||.++..+|+..+ .+|+++|.++.+++.|+++++..|+. +++++++|..+-..
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g-----------~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~-- 141 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVK-----------TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFP-- 141 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC-----------SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG--
T ss_pred cCccceEEEecCCCChhHHHHHHhhC-----------ceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCc--
Confidence 78899999999999999999998754 47999999999999999999999985 89999999876432
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...+||.|+.. ... +.....+ -..|+|||+++
T Consensus 142 -~~~pfD~Iiv~----~a~-~~ip~~l----~~qL~~gGrLv 173 (215)
T d1jg1a_ 142 -PKAPYDVIIVT----AGA-PKIPEPL----IEQLKIGGKLI 173 (215)
T ss_dssp -GGCCEEEEEEC----SBB-SSCCHHH----HHTEEEEEEEE
T ss_pred -ccCcceeEEee----ccc-ccCCHHH----HHhcCCCCEEE
Confidence 23689999873 121 2223333 34689999986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.96 E-value=1.2e-09 Score=109.05 Aligned_cols=126 Identities=15% Similarity=0.106 Sum_probs=92.9
Q ss_pred HHHhhCCHHHHHHHHHHHHhh-------------ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCC
Q 044245 43 YLDMLNDSYRNRAYRLAIDKM-------------VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESY 109 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~-------------~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s 109 (694)
|..+-.|..+.+.|.+++... +....+|||||||+|.++..++++.+ ..+++++|.
T Consensus 45 ~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P----------~~~~~~~Dl- 113 (256)
T d1qzza2 45 WEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAP----------HLRGTLVEL- 113 (256)
T ss_dssp HHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-
T ss_pred HHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhc----------CcEEEEecC-
Confidence 334455677777776665431 12347899999999999999999975 469999998
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 110 LPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 110 ~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.+++.|+++++..++.+++.++.++..+ .++..+|+|++..+-+.. .+.....++..+.+.|+|||+++
T Consensus 114 p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-----~~p~~~D~v~~~~vLh~~-~d~~~~~lL~~i~~~LkpgG~ll 183 (256)
T d1qzza2 114 AGPAERARRRFADAGLADRVTVAEGDFFK-----PLPVTADVVLLSFVLLNW-SDEDALTILRGCVRALEPGGRLL 183 (256)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSCCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hHHHHHHHHHHhhcCCcceeeeeeeeccc-----cccccchhhhcccccccc-CcHHHHHHHHHHHhhcCCcceeE
Confidence 88999999999999999999999998765 234579999874332221 12223355666677999999876
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.4e-09 Score=109.52 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=73.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||||||+|.++..++++++ ..+++|+|+|+.|++.|++.. .+++++.+++.+++++.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~----------~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~ 145 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALP----------EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD 145 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCT----------TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCC----------CCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCC
Confidence 34678999999999999999999875 468999999999999987642 37899999999987643
Q ss_pred CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 144 DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+.||+|++.. .. . .+ ..+.|+|+|||.++
T Consensus 146 ---~sfD~v~~~~----~~-~-~~----~e~~rvLkpgG~l~ 174 (268)
T d1p91a_ 146 ---TSMDAIIRIY----AP-C-KA----EELARVVKPGGWVI 174 (268)
T ss_dssp ---TCEEEEEEES----CC-C-CH----HHHHHHEEEEEEEE
T ss_pred ---CCEEEEeecC----CH-H-HH----HHHHHHhCCCcEEE
Confidence 6899999731 11 1 12 34567999999886
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.95 E-value=1.2e-09 Score=100.21 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=85.8
Q ss_pred HHHHHHHhc-CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 394 VMAMRNALQ-GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 394 ~~Ai~~~~~-~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
+.||.+-+. .++|++|||+++| |.+++.||..| |++|+++|. ++.+.+.+++.++.|++. +++++++++..+.-
T Consensus 2 re~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg-a~~v~~ve~--~~~a~~~~~~n~~~~~~~-~~~~ii~~D~~~~l 77 (152)
T d2esra1 2 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEK--NRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAI 77 (152)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECC--CHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHH
T ss_pred cHHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC-cceeeeehh--chhhhhhhhhhhhhcccc-cchhhhcccccccc
Confidence 345554443 2578999999999 99999999986 999999999 888888999999999998 99999999876542
Q ss_pred ccccCCccccEEEccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 472 MDDTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
. ...++.|+|+..| |.. +... ..|. ...+ .++|+|+|.++-+
T Consensus 78 ~--~~~~~fDiIf~DPPy~~---~~~~-~~l~--~i~~--~~~L~~~g~iiiE 120 (152)
T d2esra1 78 D--CLTGRFDLVFLDPPYAK---ETIV-ATIE--ALAA--KNLLSEQVMVVCE 120 (152)
T ss_dssp H--HBCSCEEEEEECCSSHH---HHHH-HHHH--HHHH--TTCEEEEEEEEEE
T ss_pred c--ccccccceeEechhhcc---chHH-HHHH--HHHH--CCCcCCCeEEEEE
Confidence 1 1257899999996 432 2222 2232 1111 2479999988654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=9.7e-10 Score=105.94 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=72.8
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccc
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSD 137 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~ 137 (694)
+++... .++.+|||||||+|.++..+ . +++|+|.|+.|++.|+++ ++++++++.+
T Consensus 29 ~~~~~~-~~~~~vLDiGcG~G~~~~~~----~------------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~ 83 (208)
T d1vlma_ 29 QAVKCL-LPEGRGVEIGVGTGRFAVPL----K------------IKIGVEPSERMAEIARKR--------GVFVLKGTAE 83 (208)
T ss_dssp HHHHHH-CCSSCEEEETCTTSTTHHHH----T------------CCEEEESCHHHHHHHHHT--------TCEEEECBTT
T ss_pred HHHHhh-CCCCeEEEECCCCccccccc----c------------eEEEEeCChhhccccccc--------cccccccccc
Confidence 344443 45678999999999876544 2 578999999999998862 5889999999
Q ss_pred ccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 138 ELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 138 ~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+++.+ +++||+|++.-+-.++ + -...++..+.++|+|||.++.
T Consensus 84 ~l~~~---~~~fD~I~~~~~l~h~--~-d~~~~l~~~~~~L~pgG~l~i 126 (208)
T d1vlma_ 84 NLPLK---DESFDFALMVTTICFV--D-DPERALKEAYRILKKGGYLIV 126 (208)
T ss_dssp BCCSC---TTCEEEEEEESCGGGS--S-CHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccc---cccccccccccccccc--c-ccccchhhhhhcCCCCceEEE
Confidence 88753 3689999985333222 2 255667777889999998874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=2.6e-10 Score=111.33 Aligned_cols=112 Identities=11% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC----CcEEEEe
Q 044245 58 LAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG----RNIKVIN 133 (694)
Q Consensus 58 ~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~----~~I~vi~ 133 (694)
+++...+.++.+|||||||||.++..+++..++.. ..+..+|+++|.++++++.|++++..+++. .+|.++.
T Consensus 72 ~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g----~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 72 EYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKG----VDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSC----CCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhcc----CCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 33333477899999999999999998888753100 011248999999999999999987654321 3899999
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+|..+... ..++||.|++. +... ...+ .+.+.|+|||+++
T Consensus 148 ~d~~~~~~---~~~~fD~Iiv~----~a~~-~~p~----~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 148 GDGRKGYP---PNAPYNAIHVG----AAAP-DTPT----ELINQLASGGRLI 187 (223)
T ss_dssp SCGGGCCG---GGCSEEEEEEC----SCBS-SCCH----HHHHTEEEEEEEE
T ss_pred cccccccc---cccceeeEEEE----eech-hchH----HHHHhcCCCcEEE
Confidence 99776432 23689999873 2222 2222 3345899999885
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.4e-09 Score=106.31 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc---
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV--- 143 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~--- 143 (694)
..++||||||+|.+++.+++..+ ..+|+|+|+++.+++.|++|++.|++.+++.+++.+..+.....
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~----------~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLN----------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE 131 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT
T ss_pred cceEEEeCCCchHHHHHHHHhCC----------CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh
Confidence 46899999999999999888864 46999999999999999999999999999999987765432211
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
...++||+|+|||.+.
T Consensus 132 ~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 132 ESEIIYDFCMCNPPFF 147 (250)
T ss_dssp CCSCCBSEEEECCCCC
T ss_pred cccCceeEEEecCccc
Confidence 1235899999999774
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.2e-09 Score=113.13 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=82.6
Q ss_pred HHHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc-------CC-C
Q 044245 56 YRLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN-------GM-G 126 (694)
Q Consensus 56 y~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n-------gl-~ 126 (694)
..+.+.+. +.++.+|||||||+|.+++.+|+..+ ..+++|||+++.|++.|+++.+.. |. .
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~----------~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~ 209 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN----------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC----------CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC----------CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccC
Confidence 34455554 67789999999999999999988754 358999999999999998877642 22 2
Q ss_pred CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 127 RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+|+++++|+.+++..... ..+|+|+++ +....+.. ...+..+.+.|+|||+++-
T Consensus 210 ~~i~~~~gd~~~~~~~~~~-~~advi~~~---~~~f~~~~-~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 210 AEYTLERGDFLSEEWRERI-ANTSVIFVN---NFAFGPEV-DHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp CCEEEEECCTTSHHHHHHH-HHCSEEEEC---CTTTCHHH-HHHHHHHHTTCCTTCEEEE
T ss_pred CceEEEECccccccccccc-CcceEEEEc---ceecchHH-HHHHHHHHHhCCCCcEEEE
Confidence 4799999999887642211 246888875 22223333 3334444568999999863
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.91 E-value=6.3e-09 Score=99.94 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
....|||||||+|...+.+|+..+ ...++|+|+++.++..|.+.++.++++ ||.++.+++.++.. .-.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p----------~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~-~~~ 98 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNP----------DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTD-YFE 98 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT----------TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGG-TSC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCC----------CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhh-hcc
Confidence 346899999999999999999975 578999999999999999999999996 89999999988752 112
Q ss_pred CCCccEEEEccccccccC-----CChHHHHHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLG-----EGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~-----e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+..+|.|.....+...-. .-+.+.++..+.+.|+|||.++
T Consensus 99 ~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 99 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred CCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEE
Confidence 357898876432211100 0123567788888999999985
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.89 E-value=1.1e-09 Score=103.86 Aligned_cols=109 Identities=9% Similarity=-0.038 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+.+|.+.....++.+|||+||| |.+++.+|+. +.+|+++|. ++.+.+.|++.++.||++ ++|++++++..++..
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~--~~~~l~~a~~n~~~~gl~-~~v~~~~gda~~~~~ 96 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDR--NPEAISTTEMNLQRHGLG-DNVTLMEGDAPEALC 96 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEES--CHHHHHHHHHHHHHTTCC-TTEEEEESCHHHHHT
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEccccccccc--ceEEEEecC--CHHHHHHHHHHHHHcCCC-cceEEEECchhhccc
Confidence 4556677777889999999999 9999999986 469999999 777778999999999998 899999998766643
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+ .+..|.|++-.-.. -+. . +. .+..+.|||||+++
T Consensus 97 ~---~~~~D~v~~~~~~~----~~~-~-----~~-~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 97 K---IPDIDIAVVGGSGG----ELQ-E-----IL-RIIKDKLKPGGRII 131 (186)
T ss_dssp T---SCCEEEEEESCCTT----CHH-H-----HH-HHHHHTEEEEEEEE
T ss_pred c---cCCcCEEEEeCccc----cch-H-----HH-HHHHHHhCcCCEEE
Confidence 2 36789887754111 011 1 11 12233699999875
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.85 E-value=7.4e-09 Score=97.81 Aligned_cols=124 Identities=19% Similarity=0.090 Sum_probs=88.0
Q ss_pred hCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC
Q 044245 47 LNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG 126 (694)
Q Consensus 47 l~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~ 126 (694)
..|..|-..|. .+...+ .+.+|||+.||||.+++.|+.+|+ .+|+.||.|..+++.+++|++..+..
T Consensus 26 t~~~vrealFn-~l~~~~-~~~~vLDlFaGsG~~glEalSRGA-----------~~v~fVE~~~~a~~~ik~Ni~~l~~~ 92 (183)
T d2ifta1 26 TGDRVKETLFN-WLMPYI-HQSECLDGFAGSGSLGFEALSRQA-----------KKVTFLELDKTVANQLKKNLQTLKCS 92 (183)
T ss_dssp --CHHHHHHHH-HHHHHH-TTCEEEETTCTTCHHHHHHHHTTC-----------SEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHH-Hhhhhc-ccceEeecccCccceeeeeeeecc-----------eeeEEeecccchhhhHhhHHhhhccc
Confidence 45666544433 233222 578999999999999999999998 79999999999999999999988875
Q ss_pred C-cEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHH--hccCCCCeEEcC
Q 044245 127 R-NIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHD--RLLVENPLTVPC 187 (694)
Q Consensus 127 ~-~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~--~~L~p~G~iiP~ 187 (694)
+ ...++..+..+.........+||+|+.+|.+. ....+.++..+. .+|+++|.++-.
T Consensus 93 ~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~----~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 93 SEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH----FNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp TTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccccccccccccccccccCCcccEEEechhHh----hhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 4 57777776544321112235799999999874 334444444443 578888877643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.1e-08 Score=107.80 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=76.3
Q ss_pred HHHHHhh-ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC-------CC-C
Q 044245 57 RLAIDKM-VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG-------MG-R 127 (694)
Q Consensus 57 ~~ai~~~-~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng-------l~-~ 127 (694)
.+.+.+. +.++.+|||||||+|.+.+.+|+..+ ..+|+|||+++.|++.|+++++..+ .. .
T Consensus 206 ~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g----------~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG----------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC----------CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 4455554 78899999999999999999888754 2589999999999999999887542 11 1
Q ss_pred cEEE-EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 128 NIKV-INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 128 ~I~v-i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.+ +.++..+.......-..+|+|+.+ ++. +...+...+..+.+.|+|||+++-
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~in---n~~-f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVN---NFL-FDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEEC---CTT-CCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cceeeeeechhhccccccccccceEEEEe---ccc-CchHHHHHHHHHHHhcCCCcEEEE
Confidence 2333 334433222111111357888874 222 233344444555679999999873
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.9e-09 Score=107.17 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=71.0
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCc----------------
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRN---------------- 128 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~---------------- 128 (694)
.++.+|||||||+|.+++.+++.+. .+|+|+|.|+.|++.|+++++.++....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-----------~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-----------QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 118 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-----------EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-----------CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccc
Confidence 4568999999999999888777654 5899999999999999999886654210
Q ss_pred ------------EE-EEeccccc-cccccCCCCCccEEEEcccccccc-CCChHHHHHHHHHhccCCCCeEEc
Q 044245 129 ------------IK-VINKRSDE-LEVGVDIDSRADILVSEILDSELL-GEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 129 ------------I~-vi~~~~~~-l~~~~~l~~~~DlIvse~~~~~l~-~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+. ........ ........++||+|++...-..+. .+.....++..+.++|+|||.++-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~ 191 (257)
T d2a14a1 119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 191 (257)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEE
Confidence 11 11111111 000011236899999842222121 112344566677889999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=8.5e-09 Score=102.81 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
+..|.+.+. +|.+|||+||| |.+|+.+|+.| +.+|+|+|- ++.|.++++++++.||++ ++|++++++..++..
T Consensus 98 r~ri~~~~~--~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~--n~~a~~~~~~N~~~n~l~-~~v~~~~~D~~~~~~ 171 (260)
T d2frna1 98 RVRMAKVAK--PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEK--DPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG 171 (260)
T ss_dssp HHHHHHHCC--TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECC--CHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC
T ss_pred HHHHHhhcC--CccEEEECcceEcHHHHHHHHhC-CcEEEEecC--CHHHHHHHHHHHHHhCCC-ceEEEEEcchHHhcc
Confidence 334555443 68899999999 99999999986 789999999 899999999999999998 999999998776542
Q ss_pred cccCCccccEEEccc
Q 044245 473 DDTQQKKVDLLIGEP 487 (694)
Q Consensus 473 ~~l~~~~vDvivsE~ 487 (694)
..++|.||.-+
T Consensus 172 ----~~~~D~Ii~~~ 182 (260)
T d2frna1 172 ----ENIADRILMGY 182 (260)
T ss_dssp ----CSCEEEEEECC
T ss_pred ----CCCCCEEEECC
Confidence 36799888764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.8e-08 Score=97.62 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=92.5
Q ss_pred hhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCC
Q 044245 46 MLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGM 125 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl 125 (694)
|.-... ...+...+.+.. +.++|||||||+|.-++++|++.+ +.++|+++|.++...+.|+++.+..|+
T Consensus 41 ~~i~~~-~g~lL~~L~~~~-~~k~vLEiGt~~GyStl~~a~al~---------~~g~i~tie~~~~~~~~A~~~~~~ag~ 109 (219)
T d2avda1 41 SMMTCE-QAQLLANLARLI-QAKKALDLGTFTGYSALALALALP---------ADGRVVTCEVDAQPPELGRPLWRQAEA 109 (219)
T ss_dssp GSCCHH-HHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHTTSC---------TTCEEEEEESCSHHHHHHHHHHHHTTC
T ss_pred cccCHH-HHHHHHHHHHcc-CCCeEEEEechhhHHHHHHHHhCC---------CCceEEEEeechhHHHHHHHHHHhcCc
Confidence 444443 344444444433 468999999999999999998864 347999999999999999999999999
Q ss_pred CCcEEEEecccccccc---ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 126 GRNIKVINKRSDELEV---GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 126 ~~~I~vi~~~~~~l~~---~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
.++|+++.+++.+... .....++||+|+.+. ..+.....+. ...++|+|||.++-+.+
T Consensus 110 ~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~-----dk~~y~~~~~-~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 110 EHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA-----DKENCSAYYE-RCLQLLRPGGILAVLRV 170 (219)
T ss_dssp TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS-----CSTTHHHHHH-HHHHHEEEEEEEEEECC
T ss_pred cceEEEEEeehhhcchhhhhhcccCCccEEEEeC-----CHHHHHHHHH-HHHHHhcCCcEEEEeCC
Confidence 9999999999766421 112246899999752 1234444444 44569999999975543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.6e-08 Score=99.86 Aligned_cols=118 Identities=11% Similarity=-0.038 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
+....++|.+.....+|+.||||||| |-+++.+|+..| .+|++||. ++.+.+++++.++.+|++ ++|+++.+..+
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~--s~~~~~~ar~~~~~~gl~-~~v~~~~~d~~ 93 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDM--SSLFTAQAKRRAEELGVS-ERVHFIHNDAA 93 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEESCCT
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEec--ccchhhHHHHHHHHhhcc-ccchhhhhHHh
Confidence 44456677888778889999999999 877777777533 48999999 777777888899999998 89999999877
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
++. +.+++|+|+|-..+. .+-++.. .. ..+.+.|||||+++-.
T Consensus 94 ~~~----~~~~fD~v~~~~~~~---~~~d~~~----~l-~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 94 GYV----ANEKCDVAACVGATW---IAGGFAG----AE-ELLAQSLKPGGIMLIG 136 (245)
T ss_dssp TCC----CSSCEEEEEEESCGG---GTSSSHH----HH-HHHTTSEEEEEEEEEE
T ss_pred hcc----ccCceeEEEEEehhh---ccCCHHH----HH-HHHHHHcCcCcEEEEE
Confidence 763 257899999864222 1112121 11 2334589999988765
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=2.3e-08 Score=97.36 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=89.7
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK 134 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~ 134 (694)
.+...+.+.. +.++||+||+++|.-++++|++.+ +.++|+.+|.++..++.|+++.+..|+.++|+++.+
T Consensus 49 ~~L~~L~~~~-~~k~iLEiGT~~GyStl~la~al~---------~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g 118 (227)
T d1susa1 49 QFLSMLLKLI-NAKNTMEIGVYTGYSLLATALAIP---------EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 118 (227)
T ss_dssp HHHHHHHHHH-TCCEEEEECCGGGHHHHHHHHHSC---------TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred HHHHHHHHhc-CCCcEEEecchhhhhHHHHHhhCC---------CCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh
Confidence 3444444433 468999999999999999999875 357999999999999999999999999999999999
Q ss_pred cccccccc----cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 135 RSDELEVG----VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 135 ~~~~l~~~----~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
+..+.-.. ....++||+|+.+. -.+.....+. ...++|+|||.++-+.+
T Consensus 119 ~a~~~L~~l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e-~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 119 PALPVLDEMIKDEKNHGSYDFIFVDA-----DKDNYLNYHK-RLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp CHHHHHHHHHHCGGGTTCBSEEEECS-----CSTTHHHHHH-HHHHHBCTTCCEEEETT
T ss_pred HHHHHHHHHHhccccCCceeEEEecc-----chhhhHHHHH-HHHhhcCCCcEEEEccC
Confidence 98764310 01135899999752 1233444444 44569999999886644
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=2.2e-08 Score=96.88 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc---
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG--- 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~--- 142 (694)
+.++|||||||+|..++++|++.. +.++|+++|.++.+++.|+++++..|+.++|+++.+++.++...
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~---------~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~ 126 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQ---------PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 126 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCC---------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH
T ss_pred CCCEEEEEccCchhHHHHHHHhCC---------CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhh
Confidence 458999999999999999998754 24799999999999999999999999999999999998875210
Q ss_pred cCCCCCccEEEEccccccccCCChHHH-HHHHHHhccCCCCeEEcCceE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPT-LQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~-l~~~~~~~L~p~G~iiP~~~~ 190 (694)
....++||+|+.+- ..+..... .+....++|+|||+++-+..-
T Consensus 127 ~~~~~~~D~ifiD~-----~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl 170 (214)
T d2cl5a1 127 KYDVDTLDMVFLDH-----WKDRYLPDTLLLEKCGLLRKGTVLLADNVI 170 (214)
T ss_dssp HSCCCCEEEEEECS-----CGGGHHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred cccccccceeeecc-----cccccccHHHHHHHhCccCCCcEEEEeCcC
Confidence 01125799998641 11222222 222334689999999876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.1e-08 Score=101.05 Aligned_cols=112 Identities=16% Similarity=0.096 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE--Eecccccccc---c
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV--INKRSDELEV---G 142 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v--i~~~~~~l~~---~ 142 (694)
.+|||||||+|.++..++++..+. ......+++|+|.|+.|++.|++.++....-.++.+ ...+.+++.. .
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~----~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQ----YPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHH----STTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhh----ccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 479999999999888776652100 000124789999999999999998765433234443 4444433210 0
Q ss_pred cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...+++||+|++.-. +.+-.-++.++..+.++|+|||.++-
T Consensus 118 ~~~~~~fD~I~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 118 KKELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp SSSCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCceeEEEEccc---eecCCCHHHHHHHHHhhCCCCCEEEE
Confidence 112468999998422 11222356677777789999998763
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.67 E-value=1.5e-08 Score=96.50 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=78.6
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.+.+++...+++.|||+||| |.+++.+|+. ..+|+++|- ++.+...+++.++.|+++..+|+++.++..+ .
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~--s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~----~ 114 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADI--NRRAIKLAKENIKLNNLDNYDIRVVHSDLYE----N 114 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEES--CHHHHHHHHHHHHHTTCTTSCEEEEECSTTT----T
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh--ccccceeee--ccccchhHHHHHHHhCCccceEEEEEcchhh----h
Confidence 34555555678899999999 9999999986 468999999 7888889999999999974579999986532 2
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.++.|+|++-+-|.. +. ..+.= +.+ ...++|+|||.++
T Consensus 115 ~~~~~fD~Ii~~~p~~~--~~---~~~~~-~l~-~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 115 VKDRKYNKIITNPPIRA--GK---EVLHR-IIE-EGKELLKDNGEIW 154 (194)
T ss_dssp CTTSCEEEEEECCCSTT--CH---HHHHH-HHH-HHHHHEEEEEEEE
T ss_pred hccCCceEEEEcccEEe--cc---hhhhh-HHH-HHHHhcCcCcEEE
Confidence 33578999999753321 11 11110 111 1234699999774
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.65 E-value=9e-09 Score=102.15 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
-++|.+.. ++|+.|||+||| |++++.||+.| + +|++++- ++.+.+.|+++++.||++ . +++++..++.
T Consensus 111 l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g-~-~V~gvDi--s~~av~~A~~na~~n~~~-~--~~~~~d~~~~-- 179 (254)
T d2nxca1 111 LKALARHL--RPGDKVLDLGTGSGVLAIAAEKLG-G-KALGVDI--DPMVLPQAEANAKRNGVR-P--RFLEGSLEAA-- 179 (254)
T ss_dssp HHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTT-C-EEEEEES--CGGGHHHHHHHHHHTTCC-C--EEEESCHHHH--
T ss_pred HHHHHhhc--CccCEEEEcccchhHHHHHHHhcC-C-EEEEEEC--ChHHHHHHHHHHHHcCCc-e--eEEecccccc--
Confidence 34565554 478999999999 99999999986 5 6999999 788888999999999996 3 5666654432
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.++.|+|++..+.. .+. -....+.+.|||||+++
T Consensus 180 --~~~~~fD~V~ani~~~----~l~-------~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 180 --LPFGPFDLLVANLYAE----LHA-------ALAPRYREALVPGGRAL 215 (254)
T ss_dssp --GGGCCEEEEEEECCHH----HHH-------HHHHHHHHHEEEEEEEE
T ss_pred --ccccccchhhhccccc----cHH-------HHHHHHHHhcCCCcEEE
Confidence 2347899999864221 111 11122334699999876
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.55 E-value=2.9e-08 Score=102.24 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=70.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
++++.+.+. +|+.|||+++| |..|+.||+.| |++|+++|. ++.+.+.++++++.||+. ++++++++++.+...
T Consensus 136 r~~~~~~~~--~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~--s~~al~~a~~N~~~ngl~-~~~~~~~~d~~~~~~ 209 (324)
T d2as0a2 136 RLALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDK--SPRAIETAKENAKLNGVE-DRMKFIVGSAFEEME 209 (324)
T ss_dssp HHHHGGGCC--TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHH
T ss_pred HHHHHhhcC--CCCeeecccCcccchhhhhhhcC-CcEEEeecC--CHHHHHHHHHHHHHcCCC-ccceeeechhhhhhH
Confidence 445555443 68899999999 99999999986 999999999 888888999999999998 899999987654321
Q ss_pred c-ccCCccccEEEccc
Q 044245 473 D-DTQQKKVDLLIGEP 487 (694)
Q Consensus 473 ~-~l~~~~vDvivsE~ 487 (694)
. .-.+++.|+||..|
T Consensus 210 ~~~~~~~~fD~Vi~Dp 225 (324)
T d2as0a2 210 KLQKKGEKFDIVVLDP 225 (324)
T ss_dssp HHHHTTCCEEEEEECC
T ss_pred HHHhccCCCCchhcCC
Confidence 1 01247899999985
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=5.3e-08 Score=97.31 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=69.2
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC----------------
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR---------------- 127 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~---------------- 127 (694)
..+|.+|||||||+|.++++.+.... .+|+|+|.|+.|++.|++.++..+..-
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-----------~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 120 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-----------EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 120 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-----------SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-----------CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcccc
Confidence 34578999999999988866555544 489999999999999998775432110
Q ss_pred -------------cEEEEeccccccc---cccCCCCCccEEEEccccccccCC-ChHHHHHHHHHhccCCCCeEE
Q 044245 128 -------------NIKVINKRSDELE---VGVDIDSRADILVSEILDSELLGE-GLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 128 -------------~I~vi~~~~~~l~---~~~~l~~~~DlIvse~~~~~l~~e-~~l~~l~~~~~~~L~p~G~ii 185 (694)
.-.++..|...-. .....+++||+|++-..-..+... ..+..++..+.++|+|||.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li 195 (263)
T d2g72a1 121 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195 (263)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred chhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 0122333332211 001123579999984322222111 124556666778999999886
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.52 E-value=1.2e-07 Score=93.40 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
|...+.+.....+++.||||||| |.++...|+.| + +|+++|. ++.+.+.|++..+.+++ +|+++.+..+++.
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~-~-~v~gvD~--s~~mi~~a~~~~~~~~~---~i~~~~~d~~~l~ 101 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-Y-EVVGLDL--HEEMLRVARRKAKERNL---KIEFLQGDVLEIA 101 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHHHHTTC---CCEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc-e-EEEEEee--ccccccccccccccccc---cchheehhhhhcc
Confidence 33344444444456789999999 99999999996 5 8999999 66666788888887776 5899999888776
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcce
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFK 524 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~ 524 (694)
. +++.|+|++-.-.. ..+.-+.+. .+-....+.|||||+++-+.
T Consensus 102 ~----~~~fD~I~~~~~~~---~~~~~~~~~--~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 102 F----KNEFDAVTMFFSTI---MYFDEEDLR--KLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp C----CSCEEEEEECSSGG---GGSCHHHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred c----ccccchHhhhhhhh---hcCChHHHH--HHHHHHHHHcCCCcEEEEEe
Confidence 4 36899999863101 111101111 11112234799999887643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.51 E-value=8.8e-08 Score=93.71 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
...+.+.....+|..||||||| |.++...|+.| .+|++++. |+.+.++|++.++.+++ ++++++.++.+++..
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~--S~~~l~~A~~~~~~~~~--~~~~~~~~d~~~~~~ 78 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDA--TKEMVEVASSFAQEKGV--ENVRFQQGTAESLPF 78 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEES--CHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCS
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeC--Chhhhhhhhhhhccccc--ccccccccccccccc
Confidence 3456666666788999999999 99999999985 58999999 66666788888889998 479999998887653
Q ss_pred cccCCccccEEEcc
Q 044245 473 DDTQQKKVDLLIGE 486 (694)
Q Consensus 473 ~~l~~~~vDvivsE 486 (694)
+.+++|+|+|-
T Consensus 79 ---~~~~fD~v~~~ 89 (234)
T d1xxla_ 79 ---PDDSFDIITCR 89 (234)
T ss_dssp ---CTTCEEEEEEE
T ss_pred ---cccccceeeee
Confidence 35789999984
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=6.9e-07 Score=85.25 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|+|||||.|.-|+.+|-..+ +.+|+.+|.+..-+...++.++..|+. +|++++++.+++..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p----------~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~---- 129 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP----------EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS---- 129 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----------TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC----
T ss_pred cCCceeeeeccCCceeeehhhhcc----------cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc----
Confidence 468999999999999999998765 579999999999999999999999996 89999999998642
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVT 190 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~ 190 (694)
..+||+|+|--+.. ++.+.....++++++|.++.-.+.
T Consensus 130 ~~~fD~V~sRA~~~-------~~~ll~~~~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 130 EPPFDGVISRAFAS-------LNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp CSCEEEEECSCSSS-------HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred ccccceehhhhhcC-------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 25799999865542 778888888999999998876654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.46 E-value=1.9e-07 Score=90.74 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=74.7
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
+.....++..||||||| |.++...|+.| .+|++++. ++.+.+.|++.++.+++ ++|+++.+..+++.. +.
T Consensus 9 ~~~~l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~--s~~~i~~A~~~~~~~~~--~~i~~~~~d~~~l~~---~~ 79 (231)
T d1vl5a_ 9 QIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDL--TEDILKVARAFIEGNGH--QQVEYVQGDAEQMPF---TD 79 (231)
T ss_dssp HHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEES--CHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCS---CT
T ss_pred HhcCCCCcCEEEEecccCcHHHHHHHHhC--CEEEEEEC--CHHHHhhhhhccccccc--ccccccccccccccc---cc
Confidence 33445577899999999 99999999996 48999999 66666788888888888 589999998887653 35
Q ss_pred ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 478 KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..|+|++--.+. .++ +.-.+ -..+.+.|||||.++
T Consensus 80 ~~fD~v~~~~~l~----~~~-d~~~~---l~~~~r~LkpgG~l~ 115 (231)
T d1vl5a_ 80 ERFHIVTCRIAAH----HFP-NPASF---VSEAYRVLKKGGQLL 115 (231)
T ss_dssp TCEEEEEEESCGG----GCS-CHHHH---HHHHHHHEEEEEEEE
T ss_pred ccccccccccccc----ccC-CHHHH---HHHHHHhcCCCcEEE
Confidence 7899999863211 122 11111 112234799999655
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3.9e-07 Score=94.97 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=75.3
Q ss_pred HHHHHHHHHhh--ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 53 NRAYRLAIDKM--VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 53 ~~~y~~ai~~~--~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
++.+.+.+.+. ..++.+|||+.||+|.+++.+|+.++ +|+|+|.++.+++.|+++++.||+. +++
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~------------~V~gvE~~~~ai~~A~~na~~n~i~-n~~ 263 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA------------SVVGVEGVPALVEKGQQNARLNGLQ-NVT 263 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS------------EEEEEESCHHHHHHHHHHHHHTTCC-SEE
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccccc------------EEEeccCcHHHHHHHHHhHHhcccc-cce
Confidence 34444444443 44678999999999999999998764 9999999999999999999999997 899
Q ss_pred EEeccccccccc-cCCCCCccEEEEccccccc
Q 044245 131 VINKRSDELEVG-VDIDSRADILVSEILDSEL 161 (694)
Q Consensus 131 vi~~~~~~l~~~-~~l~~~~DlIvse~~~~~l 161 (694)
++.++..+.... .....++|+||.+|.-.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~ 295 (358)
T d1uwva2 264 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 295 (358)
T ss_dssp EEECCTTSCCSSSGGGTTCCSEEEECCCTTCC
T ss_pred eeecchhhhhhhhhhhhccCceEEeCCCCccH
Confidence 999998764321 1123579999999877553
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.44 E-value=2.2e-07 Score=93.56 Aligned_cols=106 Identities=8% Similarity=-0.002 Sum_probs=74.6
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
....++..||||||| |.++...|+..| .+|++++. ++.+.+.+++..+..|++ ++|+++.+..+++.. +.++
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~--s~~~i~~a~~~~~~~gl~-~~v~~~~~d~~~l~~---~~~s 135 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNI--APVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPC---EDNS 135 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEES--CHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSS---CTTC
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEec--cchhhhhhhccccccccc-ccccccccccccccc---cccc
Confidence 334578899999999 877777766533 48999999 776667788888889998 899999998887753 3578
Q ss_pred ccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 480 VDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.|+|+|-..+.. ++ +.-. +-....+.|||||+++
T Consensus 136 fD~V~~~~~l~h----~~-d~~~---~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 136 YDFIWSQDAFLH----SP-DKLK---VFQECARVLKPRGVMA 169 (282)
T ss_dssp EEEEEEESCGGG----CS-CHHH---HHHHHHHHEEEEEEEE
T ss_pred cchhhccchhhh----cc-CHHH---HHHHHHHhcCCCcEEE
Confidence 999998532111 12 1111 1122345799999875
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=2.7e-07 Score=90.87 Aligned_cols=105 Identities=7% Similarity=-0.016 Sum_probs=75.6
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
|.......+|.+|||+||| |.|++..|++ |...+|+++|. ++...+.|++.++.++.. ++|++++++..+..
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~--~e~~~~~A~~n~~~~~~~-~nv~~~~~Di~~~~--- 150 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER--DEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI--- 150 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECS--CHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC---
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEEC--CHHHHHHHHHHHHHhcCC-CceEEEEeeeeccc---
Confidence 3344445688999999999 9999998886 43569999999 676677888888887766 89999999765542
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.+.+|.|+... --||..|. .+ .+.|||||+++
T Consensus 151 -~~~~fD~V~ld~-------p~p~~~l~--~~----~~~LKpGG~lv 183 (250)
T d1yb2a1 151 -SDQMYDAVIADI-------PDPWNHVQ--KI----ASMMKPGSVAT 183 (250)
T ss_dssp -CSCCEEEEEECC-------SCGGGSHH--HH----HHTEEEEEEEE
T ss_pred -ccceeeeeeecC-------CchHHHHH--HH----HHhcCCCceEE
Confidence 346799998753 23566552 22 23599999764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=1.4e-07 Score=87.71 Aligned_cols=103 Identities=10% Similarity=0.009 Sum_probs=71.9
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.|||++|| |.+++.|++.| | +|+++|. ++.+.++++++++.||++ ++|.......- +.......++.|+|
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~g-a-~vv~vD~--~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~-~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEG-W-EAVLVEK--DPEAVRLLKENVRRTGLG-ARVVALPVEVF-LPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT-C-EEEEECC--CHHHHHHHHHHHHHHTCC-CEEECSCHHHH-HHHHHHTTCCEEEE
T ss_pred CCCeEEEeccccchhhhhhhhcc-c-hhhhccc--CHHHHhhhhHHHHhhccc-cceeeeehhcc-cccccccCCcccee
Confidence 57899999999 99999999986 7 6889999 888889999999999997 77766655321 11111235789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..|=|.. + +. ..+. ...++ .+|+|||.++
T Consensus 115 f~DPPY~~--~-~~-~~l~--~l~~~--~ll~~~g~iv 144 (171)
T d1ws6a1 115 FMAPPYAM--D-LA-ALFG--ELLAS--GLVEAGGLYV 144 (171)
T ss_dssp EECCCTTS--C-TT-HHHH--HHHHH--TCEEEEEEEE
T ss_pred EEcccccc--C-HH-HHHH--HHHHc--CCcCCCeEEE
Confidence 99953321 2 11 2221 11111 3789999875
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.39 E-value=7.2e-07 Score=85.07 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=64.0
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
.....++|+.|||+||| |.+++.|++.| |.+|+++|- ++.+.+.++++++.|+. +++++.++..++ .
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi--~~~~~~~a~~N~~~~~~---~~~~~~~d~~~~------~ 107 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEV--DKEAVDVLIENLGEFKG---KFKVFIGDVSEF------N 107 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHTGGGTT---SEEEEESCGGGC------C
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcC--cHHHHHHHHHHHHHcCC---CceEEECchhhh------C
Confidence 33445678999999999 99999999986 899999999 78888888999888876 467887765443 4
Q ss_pred ccccEEEccccc
Q 044245 478 KKVDLLIGEPYY 489 (694)
Q Consensus 478 ~~vDvivsE~~~ 489 (694)
+++|+||+.|=|
T Consensus 108 ~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 108 SRVDIVIMNPPF 119 (201)
T ss_dssp CCCSEEEECCCC
T ss_pred CcCcEEEEcCcc
Confidence 789999999633
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.39 E-value=4.4e-07 Score=91.20 Aligned_cols=114 Identities=7% Similarity=-0.064 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLT 471 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~ 471 (694)
++..+.+. ...+|..||||||| |-++..+|+..|+ +|++++. ++...+++++.++..|++ +++++......+
T Consensus 41 ~~~~~~~l-~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~l--s~~q~~~a~~~~~~~~l~-~~~~~~~~d~~~-- 113 (280)
T d2fk8a1 41 VDLNLDKL-DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTL--SKNQHARCEQVLASIDTN-RSRQVLLQGWED-- 113 (280)
T ss_dssp HHHHHTTS-CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEES--CHHHHHHHHHHHHTSCCS-SCEEEEESCGGG--
T ss_pred HHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecc--hHHHHHHHHHHHHhhccc-cchhhhhhhhhh--
Confidence 44433333 44578899999999 8888888876434 8999998 666667888889999997 888888764332
Q ss_pred ccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 472 MDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 472 ~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
+ +++.|.|+|=.++. .+-. .++. ..-.+..++|||||+++=+
T Consensus 114 ---~-~~~fD~i~si~~~e---h~~~-~~~~--~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 114 ---F-AEPVDRIVSIEAFE---HFGH-ENYD--DFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp ---C-CCCCSEEEEESCGG---GTCG-GGHH--HHHHHHHHHSCTTCEEEEE
T ss_pred ---h-ccchhhhhHhhHHH---Hhhh-hhHH--HHHHHHHhccCCCceEEEE
Confidence 2 46799999965433 2332 2221 1112234589999987654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.36 E-value=4e-07 Score=85.47 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=85.6
Q ss_pred HHHHHHHHHhc-CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQ-GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~-~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
.-+.||..-+. ...|++|||+.+| |.+++-|+.-| |++|+.||. ++.+.+.++++++.++.. ++++++.+++.+
T Consensus 27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~--~~~a~~~~~~N~~~~~~~-~~~~i~~~D~~~ 102 (182)
T d2fhpa1 27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEK--NFAALKVIKENIAITKEP-EKFEVRKMDANR 102 (182)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEES--CHHHHHHHHHHHHHHTCG-GGEEEEESCHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc-hhHHHHHHH--HHHHHHHHHHHhhhhhcc-cccccccccchh
Confidence 34556655543 3478999999999 99999999986 999999999 788888999999999987 899999998765
Q ss_pred cccc-ccCCccccEEEccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEcc
Q 044245 470 LTMD-DTQQKKVDLLIGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPF 523 (694)
Q Consensus 470 ~~~~-~l~~~~vDvivsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~ 523 (694)
.-.. .-...+.|+|+..| |.. .... ..|.. ... ..+|+|+|.|+=+
T Consensus 103 ~l~~~~~~~~~fDlIflDPPY~~---~~~~-~~l~~-i~~---~~~L~~~giIi~E 150 (182)
T d2fhpa1 103 ALEQFYEEKLQFDLVLLDPPYAK---QEIV-SQLEK-MLE---RQLLTNEAVIVCE 150 (182)
T ss_dssp HHHHHHHTTCCEEEEEECCCGGG---CCHH-HHHHH-HHH---TTCEEEEEEEEEE
T ss_pred hhhhhcccCCCcceEEechhhhh---hHHH-HHHHH-HHH---CCCCCCCEEEEEE
Confidence 3211 01246799999995 533 2222 22221 111 2478999977643
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.34 E-value=5.9e-07 Score=87.67 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=63.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++++|||||||+|.++..+++.++ +|+|+|+++.+++.+++.... . ++++++++|+.++..+.
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~------------~v~avE~D~~l~~~l~~~~~~--~-~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN------------FVTAIEIDHKLCKTTENKLVD--H-DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS------------EEEEECSCHHHHHHHHHHTTT--C-CSEEEECCCGGGCCCCS
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC------------ceEEEeeccchHHHHHHHhhc--c-cchhhhhhhhhhccccc
Confidence 46789999999999999999999874 999999999999999876532 2 48999999998876432
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
.+...||+|+.++
T Consensus 84 ---~~~~~vv~NLPYn 96 (235)
T d1qama_ 84 ---NQSYKIFGNIPYN 96 (235)
T ss_dssp ---SCCCEEEEECCGG
T ss_pred ---cccceeeeeehhh
Confidence 2345688987664
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=7e-07 Score=86.85 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+++|||+|.|.-|+.+|-..+ ..+|+.+|.+..-+...+..++.-|+. ++.+++++++++....+.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p----------~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~ 138 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP----------HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDV 138 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTT
T ss_pred CCCeEEeecCCCchHHHHHHHhCC----------CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccc
Confidence 467999999999999999998764 579999999999999999999999997 899999999887543334
Q ss_pred CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCceEEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRVTTY 192 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~~~~ 192 (694)
.++||+|+|--+. -++.+......+++++|.++...+.-+
T Consensus 139 ~~~~D~v~sRAva-------~l~~ll~~~~~~l~~~g~~i~~KG~~~ 178 (239)
T d1xdza_ 139 RESYDIVTARAVA-------RLSVLSELCLPLVKKNGLFVALKAASA 178 (239)
T ss_dssp TTCEEEEEEECCS-------CHHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred cccceEEEEhhhh-------CHHHHHHHHhhhcccCCEEEEECCCCh
Confidence 5789999996544 278888888899999999987777654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=5.7e-07 Score=84.46 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=75.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.++.|||+.+| |.+++-|+.-| |++|++||. ++.+.++++++++.++.. +++++.+++.+.-. . ..++.|+|
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~--~~~a~~~~k~N~~~~~~~--~~~ii~~d~~~~l~-~-~~~~fDlI 115 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEM--DRAVSQQLIKNLATLKAG--NARVVNSNAMSFLA-Q-KGTPHNIV 115 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECS--CHHHHHHHHHHHHHTTCC--SEEEECSCHHHHHS-S-CCCCEEEE
T ss_pred chhhhhhhhccccceeeeEEecC-cceeEEEEE--eechhhHHHHHHhhcccc--ceeeeeeccccccc-c-cccccCEE
Confidence 67899999999 99999999986 999999999 788888999999988874 68999987654422 1 25789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..|=|.. +... ..+.. ... ..+|+|+|.|+
T Consensus 116 f~DPPY~~--~~~~-~~l~~-l~~---~~~L~~~~iIi 146 (183)
T d2fpoa1 116 FVDPPFRR--GLLE-ETINL-LED---NGWLADEALIY 146 (183)
T ss_dssp EECCSSST--TTHH-HHHHH-HHH---TTCEEEEEEEE
T ss_pred EEcCcccc--chHH-HHHHH-HHH---CCCCCCCeEEE
Confidence 99953331 3333 33321 111 23688877664
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=1.3e-06 Score=86.82 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=62.8
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
..+|+|+|+| |.+++.+|+.. ..+|+|+|- ++.|.++|+++++.||+. +++.+.++...+.... ...++|+||
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~-~~~v~a~Di--s~~Al~~A~~Na~~~~~~-~~~~i~~~~~~~~~~~--~~~~fDlIV 184 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFS-DAIVFATDV--SSKAVEIARKNAERHGVS-DRFFVRKGEFLEPFKE--KFASIEMIL 184 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-SCEEEEEES--CHHHHHHHHHHHHHTTCT-TSEEEEESSTTGGGGG--GTTTCCEEE
T ss_pred ccEEEEeeeeeehhhhhhhhcc-cceeeechh--hhhHHHHHHHHHHHcCCC-ceeEEeeccccccccc--ccCcccEEE
Confidence 3579999999 88887788875 678999999 899999999999999998 8999998865433221 136899999
Q ss_pred ccc-cc
Q 044245 485 GEP-YY 489 (694)
Q Consensus 485 sE~-~~ 489 (694)
|-| |-
T Consensus 185 sNPPYI 190 (271)
T d1nv8a_ 185 SNPPYV 190 (271)
T ss_dssp ECCCCB
T ss_pred Eccccc
Confidence 984 44
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.30 E-value=8.8e-07 Score=86.97 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=69.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+++.||||||| |.++...|+.| .+|+++|. |+.+.+.|++.++.+|+ +|+++.++.+++.. .++.|+|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~--S~~ml~~A~~~~~~~~~---~v~~~~~d~~~~~~----~~~fD~i 105 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDL--SQEMLSEAENKFRSQGL---KPRLACQDISNLNI----NRKFDLI 105 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECS--CHHHHHHHHHHHHHTTC---CCEEECCCGGGCCC----SCCEEEE
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeecc--chhhhhhccccccccCc---cceeeccchhhhcc----ccccccc
Confidence 45789999999 99999999996 48999999 66666678877777776 48999997776653 4789999
Q ss_pred Ec--cccccCCccccC-cchhhHHHHHhhcccccCCCceEE
Q 044245 484 IG--EPYYFGNDGMLP-WQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vs--E~~~~~~e~~l~-w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++ ..+. .++ ...+. -.-.+..++|+|||.++
T Consensus 106 ~~~~~~~~-----~~~~~~~~~--~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 106 TCCLDSTN-----YIIDSDDLK--KYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp EECTTGGG-----GCCSHHHHH--HHHHHHHTTEEEEEEEE
T ss_pred ceeeeeee-----ccCCHHHHH--HHHHHHHHhCCCCeEEE
Confidence 87 3321 121 11221 11122345799999766
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.29 E-value=9.9e-07 Score=83.44 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=55.6
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+.|+.|||+||| |+|++.|++.| +++|+++|. ++.+.+.+++++ .+++++.++++++ ++++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDi--d~~a~~~ar~N~-------~~~~~~~~D~~~l------~~~f 108 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDI--DPDAIETAKRNC-------GGVNFMVADVSEI------SGKY 108 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEES--CHHHHHHHHHHC-------TTSEEEECCGGGC------CCCE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcC-CCccccccc--CHHHHHHHHHcc-------ccccEEEEehhhc------CCcc
Confidence 34678999999999 99999999996 999999999 777766666543 3467777765543 3689
Q ss_pred cEEEccc
Q 044245 481 DLLIGEP 487 (694)
Q Consensus 481 DvivsE~ 487 (694)
|+||+.|
T Consensus 109 D~Vi~NP 115 (197)
T d1ne2a_ 109 DTWIMNP 115 (197)
T ss_dssp EEEEECC
T ss_pred eEEEeCc
Confidence 9999995
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.27 E-value=1.6e-06 Score=82.13 Aligned_cols=102 Identities=8% Similarity=-0.015 Sum_probs=70.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.||||||| |.+++..|+.| -+|+++|. ++.+.+.+++.++..|++ ++++.....+++.. .++.|+
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~--s~~~l~~a~~~~~~~~~~--~~~~~~~d~~~~~~----~~~fD~ 98 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDK--NPASMANLERIKAAEGLD--NLQTDLVDLNTLTF----DGEYDF 98 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHHHHTTCT--TEEEEECCTTTCCC----CCCEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHHh--hhhccccC--cHHHHHHHHHHhhhcccc--chhhhheecccccc----cccccE
Confidence 345689999999 99999989986 48999999 777677788888888884 68887775554442 467999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++=..+. .++++.+.-+.. +..++|+|||.++
T Consensus 99 I~~~~~~~----~~~~~~~~~~l~--~~~~~L~pgG~~~ 131 (198)
T d2i6ga1 99 ILSTVVMM----FLEAQTIPGLIA--NMQRCTKPGGYNL 131 (198)
T ss_dssp EEEESCGG----GSCTTHHHHHHH--HHHHTEEEEEEEE
T ss_pred EEEeeeee----cCCHHHHHHHHH--HHHHHcCCCcEEE
Confidence 99843222 345443321122 2234799999764
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=8.2e-07 Score=83.85 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=79.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.++.++||++||+|..+..++++.+ .++|+|+|.++.|++.|+++.+..+ +++.+++++..++...
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~----------~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCP----------GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLL 88 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT----------TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCC----------CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHH
Confidence 46789999999999999999999864 4799999999999999999887644 6899999998776421
Q ss_pred -cCCCCCccEEEEcccc-cccc-C-CC---hHHHHHHHHHhccCCCCeEE
Q 044245 143 -VDIDSRADILVSEILD-SELL-G-EG---LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 -~~l~~~~DlIvse~~~-~~l~-~-e~---~l~~l~~~~~~~L~p~G~ii 185 (694)
....+++|.|+.++-- +.-+ . +. .+...+....++|+|||+++
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 1112689999876311 1000 1 11 23345555667999999865
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.23 E-value=1.9e-06 Score=84.95 Aligned_cols=108 Identities=9% Similarity=-0.057 Sum_probs=69.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+++.||||||| |-.+...++.| .++|++++. ++.+.+.|++-++.++.. .++.++.++....... ..++.|+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~--S~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~--~~~~fD~ 96 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDI--AEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMD--LGKEFDV 96 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEES--CHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCC--CSSCEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecC--CHHHHHHHHHHHHhcCCC-cceEEEEcchhhhccc--ccccceE
Confidence 367899999999 75555667775 789999999 676666777777777776 7899999876433321 2468999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++-..... .+-+.+.+. ..-....+.|+|||.++
T Consensus 97 V~~~~~l~~--~~~~~~~~~--~~l~~i~~~Lk~gG~~i 131 (252)
T d1ri5a_ 97 ISSQFSFHY--AFSTSESLD--IAQRNIARHLRPGGYFI 131 (252)
T ss_dssp EEEESCGGG--GGSSHHHHH--HHHHHHHHTEEEEEEEE
T ss_pred EEEcceeee--cCCCHHHHH--HHHHHHhceeCCCCEEE
Confidence 998631110 011211221 11112234799999754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.1e-06 Score=85.51 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=67.8
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||+|+|.|+..+++.++ +|+|+|+++.+++..++....+...++++++++|+.....
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~------------~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-- 84 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAK------------KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 84 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS------------EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCC------------cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh--
Confidence 55689999999999999999999975 9999999999999999988777666799999999987653
Q ss_pred CCCCCccEEEEccccc
Q 044245 144 DIDSRADILVSEILDS 159 (694)
Q Consensus 144 ~l~~~~DlIvse~~~~ 159 (694)
...+.||+|+.++
T Consensus 85 ---~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 ---PFFDTCVANLPYQ 97 (278)
T ss_dssp ---CCCSEEEEECCGG
T ss_pred ---hhhhhhhcchHHH
Confidence 2467899987664
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.22 E-value=1.7e-06 Score=86.02 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=77.2
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCC-CceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSK-TAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~-a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
|.......+|..|||+||| |.+++..|++.| ..+|+++|. ++...+.|++.++.+|+. +++++..+.+.+ .
T Consensus 95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~--~~~~~~~A~~~~~~~g~~-~~v~~~~~d~~~----~ 167 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEK--REEFAKLAESNLTKWGLI-ERVTIKVRDISE----G 167 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECC--CHHHHHHHHHHHHHTTCG-GGEEEECCCGGG----C
T ss_pred HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeC--CHHHHHHHHHHHHHhccc-cCcEEEeccccc----c
Confidence 5555666789999999999 999998888732 459999999 777778899999999997 899998875432 1
Q ss_pred cCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 475 TQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 475 l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+....+|.++-.. --||..|. .+ .+.|||||+++
T Consensus 168 ~~~~~~D~V~~d~-------p~p~~~l~--~~----~~~LKpGG~lv 201 (266)
T d1o54a_ 168 FDEKDVDALFLDV-------PDPWNYID--KC----WEALKGGGRFA 201 (266)
T ss_dssp CSCCSEEEEEECC-------SCGGGTHH--HH----HHHEEEEEEEE
T ss_pred ccccceeeeEecC-------CCHHHHHH--HH----HhhcCCCCEEE
Confidence 2245688876542 23566552 22 23599999875
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=1.7e-06 Score=87.14 Aligned_cols=114 Identities=9% Similarity=-0.027 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHHHHH-HcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTICVA-RLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA-~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
++..+++. ...+|..||||||| |-+++.+| +.| + +|+.+.. ++....++++.++..|+. +++++......
T Consensus 50 ~~~~~~~l-~l~~G~~VLDiGCG~G~~~~~~a~~~g-~-~v~git~--s~~q~~~a~~~~~~~~l~-~~v~~~~~d~~-- 121 (291)
T d1kpia_ 50 RKLALDKL-NLEPGMTLLDIGCGWGSTMRHAVAEYD-V-NVIGLTL--SENQYAHDKAMFDEVDSP-RRKEVRIQGWE-- 121 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHHHC-C-EEEEEES--CHHHHHHHHHHHHHSCCS-SCEEEEECCGG--
T ss_pred HHHHHHhc-CCCCCCEEEEecCcchHHHHHHHHhcC-c-ceeeccc--hHHHHHHHHHHHHhhccc-hhhhhhhhccc--
Confidence 33333433 45678999999999 77777655 565 4 8989988 665566778888889998 89998776432
Q ss_pred cccccCCccccEEEccccccCCccccCc---chhhHH-HHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPW---QNLRFW-KERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w---~~l~f~-~~r~~~~~~L~p~g~i~ 521 (694)
. ..++.|.|||-.++.. |-+= ..+++| ..-.+..++|||||+++
T Consensus 122 -~---~~~~fD~i~sie~~eH---~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 122 -E---FDEPVDRIVSLGAFEH---FADGAGDAGFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp -G---CCCCCSEEEEESCGGG---TTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred -c---cccccceEeechhHHh---cchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence 1 2478999999754442 2110 001111 11123345899999876
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.20 E-value=1.5e-06 Score=86.95 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=80.4
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc---------CCCCcEEEEec
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN---------GMGRNIKVINK 134 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n---------gl~~~I~vi~~ 134 (694)
..+.++||.||.|.|..+..+.+... .+|++||+++.+++.|++....+ .-..|++++.+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~-----------~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~ 138 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDV-----------DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG 138 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCC-----------SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES
T ss_pred CCCCceEEEecCCchHHHHHHHHhCC-----------ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC
Confidence 34568999999999999888777543 58999999999999999865322 23469999999
Q ss_pred cccccccccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCc
Q 044245 135 RSDELEVGVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 135 ~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
|...... . .++||+|+.++.+........ -..+...+++.|+|||+++-+.
T Consensus 139 Da~~~l~-~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 139 DGFEFIK-N--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CHHHHHH-H--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHh-c--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 9876542 1 368999999876642211111 2346667778999999987443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.20 E-value=1e-06 Score=89.99 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=65.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc-cccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM-DDTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~-~~l~~~~vDv 482 (694)
+|+.|||+.+| |-.|+.||+.| |++|++||. ++.+.+.++++++.||++.++++++++++.+.-. ..-.+++.|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~--s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDL--AKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEES--CTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCC-CceEEEecC--CHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 58899999999 99999999875 999999999 7777788999999999965689999997743311 1112578999
Q ss_pred EEccc
Q 044245 483 LIGEP 487 (694)
Q Consensus 483 ivsE~ 487 (694)
||..|
T Consensus 221 Ii~DP 225 (317)
T d2b78a2 221 IIIDP 225 (317)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99984
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.19 E-value=2.1e-06 Score=82.47 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
...|++.+. ++..||||||| |.++...|+.| .+|++++. ++.+.++|++.....+. ++..+.+..+++..
T Consensus 28 ~~~~~~~l~--~~~~ILDiGcG~G~~~~~la~~~--~~v~giD~--S~~~i~~ak~~~~~~~~---~~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 28 EPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYG--FEVVGVDI--SEDMIRKAREYAKSRES---NVEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTT--CEEEEEES--CHHHHHHHHHHHHHTTC---CCEEEECCTTSCCS
T ss_pred HHHHHHhcC--CCCEEEEECCCcchhhhhHhhhh--cccccccc--cccchhhhhhhhccccc---cccccccccccccc
Confidence 334555443 55689999999 99999999985 47999999 66666677777666654 36777777666643
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
+.+..|+|++-..+. .++-..+. -+-....++|||||++
T Consensus 99 ---~~~~fD~I~~~~~l~----~~~~~d~~--~~l~~i~~~LkpgG~l 137 (226)
T d1ve3a1 99 ---EDKTFDYVIFIDSIV----HFEPLELN--QVFKEVRRVLKPSGKF 137 (226)
T ss_dssp ---CTTCEEEEEEESCGG----GCCHHHHH--HHHHHHHHHEEEEEEE
T ss_pred ---cCcCceEEEEecchh----hCChhHHH--HHHHHHHHHcCcCcEE
Confidence 357899999963211 11101221 1112234579999975
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.19 E-value=1.4e-06 Score=88.62 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=85.6
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH-c-C--CCCcEEEEeccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV-N-G--MGRNIKVINKRSDELE 140 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~-n-g--l~~~I~vi~~~~~~l~ 140 (694)
...++||.||.|.|.++..+.+... ..+|++||+++.+++.|++.... + + -..|++++.+|..+.-
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~----------~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l 145 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT----------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL 145 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC----------cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHh
Confidence 4568999999999999888887653 36999999999999999988743 1 1 1358999999988764
Q ss_pred cccCCCCCccEEEEccccccccCC---C-hHHHHHHHHHhccCCCCeEEcCceEEEEE
Q 044245 141 VGVDIDSRADILVSEILDSELLGE---G-LIPTLQHAHDRLLVENPLTVPCRVTTYGQ 194 (694)
Q Consensus 141 ~~~~l~~~~DlIvse~~~~~l~~e---~-~l~~l~~~~~~~L~p~G~iiP~~~~~~~~ 194 (694)
. ...++||+|+.++.+...... . .-..+...+++.|+|||+++-+....+..
T Consensus 146 ~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~ 201 (312)
T d1uira_ 146 E--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT 201 (312)
T ss_dssp H--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC-
T ss_pred h--hcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccc
Confidence 2 234689999998755432111 1 12356667778999999998765554433
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=3e-06 Score=84.27 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=61.4
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..|||+||| |.+++..|+.-...+|+|+|- ++.|.++|+++++.||++ +|++++++.-+ .++.++.|+|
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDi--s~~Al~~A~~Na~~~~~~--~v~~~~~d~~~----~~~~~~fDlI 179 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDR--MPDAVSLAQRNAQHLAIK--NIHILQSDWFS----ALAGQQFAMI 179 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECS--SHHHHHHHHHHHHHHTCC--SEEEECCSTTG----GGTTCCEEEE
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccc--hhHHHhHHHHHHHHhCcc--cceeeeccccc----ccCCCceeEE
Confidence 45679999999 888887766534679999999 899999999999999995 69999986321 2345799999
Q ss_pred Eccc-cc
Q 044245 484 IGEP-YY 489 (694)
Q Consensus 484 vsE~-~~ 489 (694)
||-| |.
T Consensus 180 vsNPPYi 186 (274)
T d2b3ta1 180 VSNPPYI 186 (274)
T ss_dssp EECCCCB
T ss_pred Eecchhh
Confidence 9985 54
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=3.2e-06 Score=84.79 Aligned_cols=104 Identities=9% Similarity=-0.016 Sum_probs=71.4
Q ss_pred cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 402 QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 402 ~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
...+|..||||||| |=+++.+|+.=|+ +|+.+.. |+.-.+++++.+++.|++ +++++..++-.++ +++.
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~--s~~Q~~~a~~~~~~~g~~-~~v~~~~~d~~~~------~~~f 128 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTL--SKNQANHVQQLVANSENL-RSKRVLLAGWEQF------DEPV 128 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEES--CHHHHHHHHHHHHTCCCC-SCEEEEESCGGGC------CCCC
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEec--cHHHHHHHHHHHHhhhhh-hhhHHHHhhhhcc------cccc
Confidence 34578899999999 8888765554234 8999988 666667788888888998 9999998754433 3678
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|.|+|=..+. .+-. .+..- +. .+..++|+|||+++
T Consensus 129 D~i~si~~~e---h~~~-~~~~~-~~-~~~~r~LkpgG~~~ 163 (285)
T d1kpga_ 129 DRIVSIGAFE---HFGH-ERYDA-FF-SLAHRLLPADGVML 163 (285)
T ss_dssp SEEEEESCGG---GTCT-TTHHH-HH-HHHHHHSCTTCEEE
T ss_pred cceeeehhhh---hcCc-hhHHH-HH-HHHHhhcCCCCcEE
Confidence 9999954333 3332 22210 11 22345799999887
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=2.3e-06 Score=86.02 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=80.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~ 141 (694)
...++||-||.|.|.++..+.+... ..+|++||+++.+++.|++....+. + ..|++++.+|..+.-.
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~----------~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 157 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDS----------VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR 157 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----------CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred CCCceEEEecCCchHHHHHHHhcCC----------CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh
Confidence 3458999999999999888887643 3689999999999999999875432 2 3599999999887643
Q ss_pred ccCCCCCccEEEEccccccccC-C-ChHHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLG-E-GLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~-e-~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
..+++||+|+.+..+..... . -.-..+...+++.|+|||+++-+
T Consensus 158 --~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 158 --KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp --GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred --cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 23478999999876642111 1 12345666777899999998744
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.14 E-value=2.7e-06 Score=85.75 Aligned_cols=112 Identities=8% Similarity=0.029 Sum_probs=76.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc-ccCCccccE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD-DTQQKKVDL 482 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~-~l~~~~vDv 482 (694)
+++.|||+.+| |.+|+.||+.| | +|++||. ++.+.+.|+++++.||+...+++++.+++.+.-.. ...+++.|+
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~G-A-~V~~VD~--s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAG-A-EVTHVDA--SKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT-C-EEEEECS--CHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred CCCeEEEecCCCcHHHHHHHhCC-C-eEEEEeC--hHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 57899999999 99999999985 7 7999999 78888899999999999744799999876544211 112478999
Q ss_pred EEccc-cccCCccccCcchhhHH-HHHhhcccccCCCceE
Q 044245 483 LIGEP-YYFGNDGMLPWQNLRFW-KERSKLDPVLSKEVII 520 (694)
Q Consensus 483 ivsE~-~~~~~e~~l~w~~l~f~-~~r~~~~~~L~p~g~i 520 (694)
||..| .|.---....|..-.+. ........+|+|||.+
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ 247 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALG 247 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 99994 44211112233322211 1112223578998853
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=4.3e-06 Score=80.25 Aligned_cols=83 Identities=7% Similarity=-0.055 Sum_probs=61.6
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
.+.....+|..||||||| |.++...|+. |...+|+++|. ++...+.+++.++.+++. +++++.+...+...
T Consensus 68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~--~~~~~~~a~~~~~~~~~~--n~~~~~~d~~~~~~--- 140 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY--SRKICEIAKRNVERLGIE--NVIFVCGDGYYGVP--- 140 (213)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCG---
T ss_pred HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeec--chhhHHHhhhhHhhhccc--ccccccCchHHccc---
Confidence 344455688899999999 9888888875 43458999999 666667888889999984 67777775443322
Q ss_pred CCccccEEEccc
Q 044245 476 QQKKVDLLIGEP 487 (694)
Q Consensus 476 ~~~~vDvivsE~ 487 (694)
...+.|+|++..
T Consensus 141 ~~~~fD~I~~~~ 152 (213)
T d1dl5a1 141 EFSPYDVIFVTV 152 (213)
T ss_dssp GGCCEEEEEECS
T ss_pred cccchhhhhhhc
Confidence 235799999874
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.3e-06 Score=81.97 Aligned_cols=119 Identities=12% Similarity=0.018 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
.|.+++...... +|+.||||||| |+++...|+.+ .++|++||. ++.+.+.|++..+..+ .++.++.+....+
T Consensus 41 ~~~~~la~~~~~-~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~--s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 41 PYMHALAAAASS-KGGRVLEVGFGMAIAASKVQEAP-IDEHWIIEC--NDGVFQRLRDWAPRQT---HKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECCTTSHHHHHHHTSC-EEEEEEEEC--CHHHHHHHHHHGGGCS---SEEEEEESCHHHH
T ss_pred HHHHHHHHhhcc-CCCeEEEeeccchHHHHHHHHcC-CCeEEEeCC--CHHHHHHHHHHhhhcc---ccccccccccccc
Confidence 466666666653 57789999999 99998888885 678999999 7766677777776654 3577777765544
Q ss_pred cccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.. .++..+.|.|+...+...+ ....+..... +. ..+.+.|||||+++
T Consensus 114 ~~-~~~~~~fD~i~fD~~~~~~-~~~~~~~~~~-~~-~~~~r~LkpGG~~~ 160 (229)
T d1zx0a1 114 AP-TLPDGHFDGILYDTYPLSE-ETWHTHQFNF-IK-NHAFRLLKPGGVLT 160 (229)
T ss_dssp GG-GSCTTCEEEEEECCCCCBG-GGTTTHHHHH-HH-HTHHHHEEEEEEEE
T ss_pred cc-ccccccccceeeccccccc-ccccccCHHH-HH-HHHHHHcCCCcEEE
Confidence 33 3445789999876533221 1111111110 11 12345799999763
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.11 E-value=2.9e-06 Score=82.07 Aligned_cols=97 Identities=5% Similarity=-0.052 Sum_probs=64.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++++.||||||| |.++...|+.| .+|+++|. ++.+.+.|++. +. ++++++++..+++.. +++.|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~--s~~~i~~a~~~-----~~-~~~~~~~~~~~~~~~----~~~fD~ 84 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEA--SEEAISHAQGR-----LK-DGITYIHSRFEDAQL----PRRYDN 84 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEES--CHHHHHHHHHH-----SC-SCEEEEESCGGGCCC----SSCEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeC--cHHHhhhhhcc-----cc-ccccccccccccccc----cccccc
Confidence 456789999999 87777778875 47999999 66555565543 23 568999987776543 478999
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|++=..+. .++ +-.. .....++++|+|||.++
T Consensus 85 I~~~~vle----h~~-d~~~--~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 85 IVLTHVLE----HID-DPVA--LLKRINDDWLAEGGRLF 116 (225)
T ss_dssp EEEESCGG----GCS-SHHH--HHHHHHHTTEEEEEEEE
T ss_pred ccccceeE----ecC-CHHH--HHHHHHHHhcCCCceEE
Confidence 99843211 122 2222 22222235799999765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.8e-06 Score=85.61 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=73.1
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhcc----------CCcccccEEEe
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADP----------NCFSIDRVEIL 463 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~----------N~l~~~~i~vi 463 (694)
.|.......+|..|||+||| |.+++..|++ |...+||++|. ++...+.|++.++. .++. ++++++
T Consensus 89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~--~~~~~~~A~~n~~~~~~~~~~~~~~~~~-~nv~~~ 165 (324)
T d2b25a1 89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEV--RKDHHDLAKKNYKHWRDSWKLSHVEEWP-DNVDFI 165 (324)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES--SHHHHHHHHHHHHHHHHHHTTTCSSCCC-CCEEEE
T ss_pred HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecC--CHHHHHHHHHHHHHhhhhhhhhhhhccc-cceeEE
Confidence 35555566789999999999 9999998886 32459999999 66666777776653 3455 789999
Q ss_pred ecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 464 QKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 464 ~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++++.+... .+....+|.|+-.. --||..|. ...+.|||||+++
T Consensus 166 ~~di~~~~~-~~~~~~fD~V~LD~-------p~P~~~l~------~~~~~LKpGG~lv 209 (324)
T d2b25a1 166 HKDISGATE-DIKSLTFDAVALDM-------LNPHVTLP------VFYPHLKHGGVCA 209 (324)
T ss_dssp ESCTTCCC--------EEEEEECS-------SSTTTTHH------HHGGGEEEEEEEE
T ss_pred ecchhhccc-ccCCCCcceEeecC-------cCHHHHHH------HHHHhccCCCEEE
Confidence 987665432 23345789887542 24676663 1233699999653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.09 E-value=1.3e-06 Score=89.40 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=62.7
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc-ccCCcccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD-DTQQKKVD 481 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~-~l~~~~vD 481 (694)
.+|+.|||++|| |-.|+.||+ | +++|+++|. ++.+.+.++++++.||++ +++++++++.+.... .-..++.|
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g-~~~V~~vD~--s~~al~~a~~n~~~ngl~--~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-G-FREVVAVDS--SAEALRRAEENARLNGLG--NVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-H-EEEEEEEES--CHHHHHHHHHHHHHTTCT--TEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-c-CCcEEeecc--hHHHHHHHHHHHHHcCCC--CcceeeccHHHHhhhhHhhhcCCC
Confidence 368899999999 888988876 4 689999999 788888999999999994 699999877654221 01247899
Q ss_pred EEEccc
Q 044245 482 LLIGEP 487 (694)
Q Consensus 482 vivsE~ 487 (694)
+||..|
T Consensus 218 ~Vi~Dp 223 (318)
T d1wxxa2 218 LVVLDP 223 (318)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999985
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=3.5e-06 Score=84.30 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=79.9
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~ 141 (694)
...++||-||.|.|..+..+.+... ..+|+.||+++.+++.|++....+. + ..|++++.+|..+.-.
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~----------~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 146 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS----------VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK 146 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC----------cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh
Confidence 3468999999999999988887643 3699999999999999999875421 2 3599999999877542
Q ss_pred ccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcC
Q 044245 142 GVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~ 187 (694)
...++||+|+++..+........ -..+.+.+++.|+|||+++-+
T Consensus 147 --~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 147 --QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp --TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred --cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 23468999999876643222222 224666778899999998755
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.05 E-value=1.1e-05 Score=77.69 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=69.5
Q ss_pred CCCCcEEEecCC-chHHHHHHHcC--CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLS--KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g--~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
.++..||||||| |-+++..|+.- ...+|++++. |+.+.+.|++.++.++.. .+++++.+...++. .++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~--S~~ml~~A~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~ 109 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDN--SQPMVERCRQHIAAYHSE-IPVEILCNDIRHVE-----IKNA 109 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECS--CHHHHHHHHHHHHTSCCS-SCEEEECSCTTTCC-----CCSE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCC--CHHHHHHHHHHhHhhccc-chhhhccchhhccc-----cccc
Confidence 367899999999 98888887741 1358999999 676667888877777776 78898887654443 3567
Q ss_pred cEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 481 DLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
|+|++--. + ..++.+... -.-.+..+.|||||.++
T Consensus 110 d~i~~~~~-l---~~~~~~d~~--~~l~~i~~~LkpgG~li 144 (225)
T d1im8a_ 110 SMVILNFT-L---QFLPPEDRI--ALLTKIYEGLNPNGVLV 144 (225)
T ss_dssp EEEEEESC-G---GGSCGGGHH--HHHHHHHHHEEEEEEEE
T ss_pred eeeEEeee-c---cccChhhHH--HHHHHHHHhCCCCceee
Confidence 88887421 1 123323221 11122335799999876
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.03 E-value=6.3e-06 Score=78.77 Aligned_cols=105 Identities=11% Similarity=-0.036 Sum_probs=66.8
Q ss_pred hcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCcc
Q 044245 401 LQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKK 479 (694)
Q Consensus 401 ~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~ 479 (694)
+...+|..|||+||| |..+...|+.-+..+|||+|- ++.+.+.|++.++.. +++.++.+..+...........
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDi--s~~~i~~a~~~a~~~----~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEY--SAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECC--CHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeC--CHHHHHHHHHHhhcc----CCceEEEeeccCccccccccce
Confidence 344578999999999 877776666533679999999 665555666655543 4678888777665543333467
Q ss_pred ccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 480 VDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+|++.+... .++..-. ..++. .+.|||||.++
T Consensus 126 vd~v~~~~~-------~~~~~~~--~l~~~-~~~LkpgG~l~ 157 (209)
T d1nt2a_ 126 VDLIYQDIA-------QKNQIEI--LKANA-EFFLKEKGEVV 157 (209)
T ss_dssp EEEEEECCC-------STTHHHH--HHHHH-HHHEEEEEEEE
T ss_pred EEEEEeccc-------ChhhHHH--HHHHH-HHHhccCCeEE
Confidence 888866531 1212211 22222 34799999774
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.03 E-value=5.5e-06 Score=86.11 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCC--------------cEEE
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGR--------------NIKV 131 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~--------------~I~v 131 (694)
++.+|||..||||..++..|+.++ ..+|+++|+|+.+++.+++|++.|+..+ ++.+
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~----------~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~ 114 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP----------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVI 114 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS----------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEE
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC----------CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEe
Confidence 578999999999999998777653 2689999999999999999999998753 3556
Q ss_pred EeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 132 INKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 132 i~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
.+.|...+.. ...++||+|..+++|+- .+.+..+++ .++.||.+.
T Consensus 115 ~~~Da~~~~~--~~~~~fDvIDiDPfGs~------~pfldsAi~-a~~~~Gll~ 159 (375)
T d2dula1 115 NHDDANRLMA--ERHRYFHFIDLDPFGSP------MEFLDTALR-SAKRRGILG 159 (375)
T ss_dssp EESCHHHHHH--HSTTCEEEEEECCSSCC------HHHHHHHHH-HEEEEEEEE
T ss_pred ehhhhhhhhH--hhcCcCCcccCCCCCCc------HHHHHHHHH-HhccCCEEE
Confidence 6666544432 22367999999987742 455555554 567777654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.03 E-value=5.7e-06 Score=80.31 Aligned_cols=114 Identities=12% Similarity=-0.008 Sum_probs=68.0
Q ss_pred HHHHHHHHHhc---CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 392 SMVMAMRNALQ---GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 392 ~y~~Ai~~~~~---~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
.-.+||.+.+. ..+|..||||||| |..+...|+.+...+|||+|- ++.+.+.+++.++.+ .++..+.+..
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDi--S~~~i~~a~~~a~~~----~ni~~i~~d~ 131 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEY--APRIMRELLDACAER----ENIIPILGDA 131 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEES--CHHHHHHHHHHTTTC----TTEEEEECCT
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeC--cHHHHHHHHHHHhhh----cccceEEEee
Confidence 45567776544 3568899999999 877777777755679999999 665555556555543 3455566555
Q ss_pred ccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 468 KCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
............+|++.+... ..+ +.-. ..+ ...++|||||.++
T Consensus 132 ~~~~~~~~~~~~v~~i~~~~~------~~~-~~~~--~l~-~~~r~LKpgG~~~ 175 (230)
T d1g8sa_ 132 NKPQEYANIVEKVDVIYEDVA------QPN-QAEI--LIK-NAKWFLKKGGYGM 175 (230)
T ss_dssp TCGGGGTTTCCCEEEEEECCC------STT-HHHH--HHH-HHHHHEEEEEEEE
T ss_pred ccCcccccccceeEEeecccc------chH-HHHH--HHH-HHHHhcccCceEE
Confidence 444322112345666665532 111 2111 122 2345799999643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=6.1e-06 Score=84.57 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC-------CcccccEEEeecccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN-------CFSIDRVEILQKGKK 468 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N-------~l~~~~i~vi~~~~~ 468 (694)
|.+.....++.+||||||| |-+.+.+|+..++++|++||- ++.+.++|++.++.. |+...+|+++++...
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~--s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEK--ADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEEC--SHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeC--CHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 3444455678899999999 988888777545899999999 777667776655432 222257999999877
Q ss_pred cccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 469 CLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++...+. -..+|+|++..+.. +..+. .+-..+-+.|||||+|+
T Consensus 221 ~~~~~~~-~~~advi~~~~~~f-------~~~~~--~~l~e~~r~LKpGg~iv 263 (328)
T d1nw3a_ 221 SEEWRER-IANTSVIFVNNFAF-------GPEVD--HQLKERFANMKEGGRIV 263 (328)
T ss_dssp SHHHHHH-HHHCSEEEECCTTT-------CHHHH--HHHHHHHTTCCTTCEEE
T ss_pred ccccccc-cCcceEEEEcceec-------chHHH--HHHHHHHHhCCCCcEEE
Confidence 6643221 13478998875321 12221 11122234699999885
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=6.8e-06 Score=81.79 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=84.1
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~ 141 (694)
.+.++||-||.|.|..+..+.+... ..+|+.||+++.+++.|++....+. + ..|++++.+|..+.-.
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~----------~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~ 143 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS----------VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA 143 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT----------CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC----------cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh
Confidence 4568999999999999999887643 3699999999999999999875432 2 3589999999877542
Q ss_pred ccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCc
Q 044245 142 GVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
...++||+|+.++.+........ -..+.+.+++.|+|||+++-+.
T Consensus 144 --~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 144 --KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp --TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred --hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 23478999999876643332222 3456667778999999987554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.01 E-value=3.2e-07 Score=90.15 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=62.6
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++.+|||||||+|.++..+++.++ +|+|+|.++.+++.+++... ...+++++++|+.+++.+.
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~------------~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISK------------QVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSS------------EEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCC
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcC------------ceeEeeecccchhhhhhhhh---hccchhhhhhhhhcccccc
Confidence 45788999999999999999999874 99999999999888765432 2358999999999876532
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
...+.||+++.+
T Consensus 92 ---~~~~~vv~NLPY 103 (245)
T d1yuba_ 92 ---KQRYKIVGNIPY 103 (245)
T ss_dssp ---SSEEEEEEECCS
T ss_pred ---ceeeeEeeeeeh
Confidence 466788998765
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.01 E-value=4.2e-06 Score=84.41 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=80.3
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG--M-GRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng--l-~~~I~vi~~~~~~l~~ 141 (694)
...++||-||.|.|.++..+.+... ..+|+.||+++.+++.|++....+. + ..|++++.+|..+.-.
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~----------v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~ 174 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHES----------VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK 174 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----------CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCC----------cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH
Confidence 4468999999999999998887653 3589999999999999999865432 1 2589999999877542
Q ss_pred ccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCce
Q 044245 142 GVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
...++||+|+.+..+........ -..+.+.+++.|+|||+++-+..
T Consensus 175 --~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 175 --NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp --HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred --hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 23478999999876543222221 23466677889999999886543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.99 E-value=1.3e-05 Score=77.18 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDT 475 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l 475 (694)
+.+.....++..|||||+| |.++.+.|+.+ .+|+++|. .+...+.|++.... . ++|+++.++...--.
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~--~~~~~~~A~~~~~~--~--~nv~~~~~d~~~g~~--- 130 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEI--NEKMYNYASKLLSY--Y--NNIKLILGDGTLGYE--- 130 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEES--CHHHHHHHHHHHTT--C--SSEEEEESCGGGCCG---
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHHh--cccccccc--cHHHHHHHHHHHhc--c--cccccccCchhhcch---
Confidence 3445556688899999999 99999999984 69999998 66666677766553 2 578999885432211
Q ss_pred CCccccEEEccc
Q 044245 476 QQKKVDLLIGEP 487 (694)
Q Consensus 476 ~~~~vDvivsE~ 487 (694)
...+.|+|+...
T Consensus 131 ~~~pfD~Iiv~~ 142 (224)
T d1vbfa_ 131 EEKPYDRVVVWA 142 (224)
T ss_dssp GGCCEEEEEESS
T ss_pred hhhhHHHHHhhc
Confidence 135689998864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.99 E-value=7e-06 Score=82.23 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcC-CCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec
Q 044245 389 WRLSMVMAMRNALQG-RVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK 465 (694)
Q Consensus 389 r~~~y~~Ai~~~~~~-~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~ 465 (694)
+++-|...|.+.+.. .++..|||+||| |.++...|+. +...+|++++. ++.+.+.|++..+.+++ +++++.+
T Consensus 10 ~n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~--s~~~l~~a~~~~~~~~~---~~~f~~~ 84 (281)
T d2gh1a1 10 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS--GETLLAEARELFRLLPY---DSEFLEG 84 (281)
T ss_dssp CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEEC--CHHHHHHHHHHHHSSSS---EEEEEES
T ss_pred hhHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEec--chhHhhhhhcccccccc---ccccccc
Confidence 455677777665522 345789999999 9998888875 21258999999 77666778887777776 4888888
Q ss_pred ccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+.+++.. +++.|+|++-..+.. +-.+. ..-.++.+.|||||.++
T Consensus 85 d~~~~~~----~~~fD~v~~~~~l~~---~~d~~-----~~l~~~~~~LkpgG~li 128 (281)
T d2gh1a1 85 DATEIEL----NDKYDIAICHAFLLH---MTTPE-----TMLQKMIHSVKKGGKII 128 (281)
T ss_dssp CTTTCCC----SSCEEEEEEESCGGG---CSSHH-----HHHHHHHHTEEEEEEEE
T ss_pred ccccccc----cCCceEEEEehhhhc---CCCHH-----HHHHHHHHHcCcCcEEE
Confidence 7776543 367999998643221 11111 11122334799999765
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=1.6e-05 Score=78.47 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=74.9
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~~~~~~~ 472 (694)
|.......+|.+|||+||| |-|++..|++ |...+|+++|. ++...+.|++.++. ++.. ++++++.++..+..
T Consensus 88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~--~~~~~~~Ar~n~~~~~~~~~-~nv~~~~~d~~~~~- 163 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQ--RADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSE- 163 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECS--CHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCC-
T ss_pred HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecC--CHHHHHHHHHhhhhhccCCC-ceEEEEeccccccc-
Confidence 4555555689999999999 9999999887 43469999999 66656677777664 3444 78999998665443
Q ss_pred cccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceE
Q 044245 473 DDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVII 520 (694)
Q Consensus 473 ~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i 520 (694)
++...+|.|+... --||..|. .+ .+.|||||++
T Consensus 164 --~~~~~fDaV~ldl-------p~P~~~l~--~~----~~~LkpGG~l 196 (264)
T d1i9ga_ 164 --LPDGSVDRAVLDM-------LAPWEVLD--AV----SRLLVAGGVL 196 (264)
T ss_dssp --CCTTCEEEEEEES-------SCGGGGHH--HH----HHHEEEEEEE
T ss_pred --ccCCCcceEEEec-------CCHHHHHH--HH----HhccCCCCEE
Confidence 3457799887642 24577663 12 2358999976
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=9.2e-06 Score=78.85 Aligned_cols=116 Identities=6% Similarity=0.002 Sum_probs=70.4
Q ss_pred cCChhHHHHHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccE
Q 044245 384 YGDGEWRLSMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRV 460 (694)
Q Consensus 384 l~D~~r~~~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i 460 (694)
+.+......+++-+.+.+ ...+++.|||+||| |.++...|+.| + +|+++|. ++.+.+.|+ .|+.. .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~v~giD~--s~~~l~~a~----~~~~~-~-- 87 (246)
T d2avna1 19 MYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-F-EVVLVDP--SKEMLEVAR----EKGVK-N-- 87 (246)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-C-EEEEEES--CHHHHHHHH----HHTCS-C--
T ss_pred HhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccc-e-EEEEeec--ccccccccc----ccccc-c--
Confidence 344444444444444322 12356789999999 99999999996 5 7999999 666555544 44443 2
Q ss_pred EEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++.+..+++.. +.++.|+|++-.-... .++ +.-. ..+ .+.++|||||.++
T Consensus 88 -~~~~~~~~l~~---~~~~fD~ii~~~~~~~---~~~-d~~~--~l~-~i~r~Lk~gG~~i 137 (246)
T d2avna1 88 -VVEAKAEDLPF---PSGAFEAVLALGDVLS---YVE-NKDK--AFS-EIRRVLVPDGLLI 137 (246)
T ss_dssp -EEECCTTSCCS---CTTCEEEEEECSSHHH---HCS-CHHH--HHH-HHHHHEEEEEEEE
T ss_pred -ccccccccccc---ccccccceeeecchhh---hhh-hHHH--HHH-HHHhhcCcCcEEE
Confidence 45677676643 3578999998531111 122 2121 122 2335799999886
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=3.8e-06 Score=81.01 Aligned_cols=103 Identities=12% Similarity=-0.110 Sum_probs=70.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++...++.+ ..+|++|+. ++.+.+.|++.++.++. .+++++.+..+++.. +.++.|+|
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~--s~~~l~~ak~~~~~~~~--~~~~f~~~d~~~~~~---~~~~fD~I 131 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDI--TEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTP---EPDSYDVI 131 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEES--CHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCC---CSSCEEEE
T ss_pred CCCEEEEeccCCCHhhHHHHHhc-CCEEEEeec--CHHHhhccccccccccc--ccccccccccccccc---cccccccc
Confidence 45789999999 98887655544 689999999 67666778888888777 478999998877653 35789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-..+. .++-..+. -.-....++|+|||.++
T Consensus 132 ~~~~~l~----h~~~~~~~--~~l~~i~~~Lk~~G~~~ 163 (222)
T d2ex4a1 132 WIQWVIG----HLTDQHLA--EFLRRCKGSLRPNGIIV 163 (222)
T ss_dssp EEESCGG----GSCHHHHH--HHHHHHHHHEEEEEEEE
T ss_pred ccccccc----cchhhhhh--hHHHHHHHhcCCcceEE
Confidence 9853211 23312121 11122345799999764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.93 E-value=9.2e-06 Score=81.71 Aligned_cols=99 Identities=13% Similarity=-0.071 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCccc--ccEE
Q 044245 385 GDGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSI--DRVE 461 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~--~~i~ 461 (694)
+...|.+.|.+.|.......+++.|||+||| |.++...|+.| + +|++++. |+.+.++|++....++... .+..
T Consensus 36 ~~~~r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g-~-~v~gvD~--S~~ml~~A~~~~~~~~~~~~~~~~~ 111 (292)
T d1xvaa_ 36 DTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-F-SVTSVDA--SDKMLKYALKERWNRRKEPAFDKWV 111 (292)
T ss_dssp TTCCBCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTT-C-EEEEEES--CHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred chhhhHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcC-C-eeeeccC--chHHHHHHHHHHHhcccccccceee
Confidence 3355777788888877766667899999999 99999999986 5 7999999 6766667776665555431 1222
Q ss_pred EeecccccccccccCCccccEEEccc
Q 044245 462 ILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 462 vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
+.+.....+.......++.|+|++-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~fd~v~~~~ 137 (292)
T d1xvaa_ 112 IEEANWLTLDKDVPAGDGFDAVICLG 137 (292)
T ss_dssp EEECCGGGHHHHSCCTTCEEEEEECS
T ss_pred eeeccccccccccCCCCCceEEEEec
Confidence 33322222221111246789998753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=97.92 E-value=7.3e-06 Score=76.63 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=68.7
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc----------cccEEEeecc
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS----------IDRVEILQKG 466 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~----------~~~i~vi~~~ 466 (694)
...+...+++.|||+||| |-.+...|+.| -+|++++. |+.+.+.+++.++..+.. ...++++.+.
T Consensus 13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~--S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAEL--SEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEE--CHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHcCCCCCCEEEEecCcCCHHHHHHHHcC--CceEeecc--cHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 444556688999999999 99999999986 48999999 676666777766554331 1234566665
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..++... .....|+|++=.++. .++.+... ..-..+.++|||||.++
T Consensus 89 ~~~l~~~--~~~~~D~i~~~~~l~----~l~~~~~~--~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 89 FFALTAR--DIGHCAAFYDRAAMI----ALPADMRE--RYVQHLEALMPQACSGL 135 (201)
T ss_dssp CSSSTHH--HHHSEEEEEEESCGG----GSCHHHHH--HHHHHHHHHSCSEEEEE
T ss_pred ccccccc--cccceeEEEEEeeeE----ecchhhhH--HHHHHHHHhcCCCcEEE
Confidence 4444321 124578887743222 12212221 11122335799999764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.92 E-value=7.3e-06 Score=78.52 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=71.5
Q ss_pred HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCC
Q 044245 399 NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 399 ~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~ 477 (694)
+.....++..||+||+| |.++...|+.-| .+|+++|. .+.....+++.++..|+ ++++++.++..+-. ...
T Consensus 72 ~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~--~~~l~~~a~~~l~~~g~--~nv~~~~gd~~~g~---~~~ 143 (215)
T d1jg1a_ 72 EIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIER--IPELVEFAKRNLERAGV--KNVHVILGDGSKGF---PPK 143 (215)
T ss_dssp HHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEES--CHHHHHHHHHHHHHTTC--CSEEEEESCGGGCC---GGG
T ss_pred HhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEec--cHHHHHHHHHHHHHcCC--ceeEEEECccccCC---ccc
Confidence 34455678899999999 988888887522 57999999 66666778889999998 58999998654322 224
Q ss_pred ccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 478 KKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 478 ~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.+.|.|+...-.. -+| +.| .. .|+|||+++
T Consensus 144 ~pfD~Iiv~~a~~----~ip-~~l---~~------qL~~gGrLv 173 (215)
T d1jg1a_ 144 APYDVIIVTAGAP----KIP-EPL---IE------QLKIGGKLI 173 (215)
T ss_dssp CCEEEEEECSBBS----SCC-HHH---HH------TEEEEEEEE
T ss_pred CcceeEEeecccc----cCC-HHH---HH------hcCCCCEEE
Confidence 6799999875111 234 222 22 489999764
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.91 E-value=2e-05 Score=73.60 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=74.6
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
.+.+|||+-+| |.+++-|+.-| |++|+.||. +..+.++++++++..+++....+++...+.+.........+.|+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~--~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlI 119 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLEL--DKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECS--CHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred ccceEeecccCccceeeeeeeec-ceeeEEeec--ccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEE
Confidence 57899999999 99999999986 999999999 777778889999988886346777776544332211224579999
Q ss_pred Eccc-cccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 484 IGEP-YYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 484 vsE~-~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
+..| |.. +... ..|.. ... ..+|+++|.++=
T Consensus 120 FlDPPY~~---~~~~-~~l~~-l~~---~~~L~~~~liii 151 (183)
T d2ifta1 120 FLDPPFHF---NLAE-QAISL-LCE---NNWLKPNALIYV 151 (183)
T ss_dssp EECCCSSS---CHHH-HHHHH-HHH---TTCEEEEEEEEE
T ss_pred EechhHhh---hhHH-HHHHH-HHH---hCCcCCCcEEEE
Confidence 9995 533 2222 23311 111 237888887653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=2.3e-05 Score=75.74 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc---------------
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF--------------- 455 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l--------------- 455 (694)
.+.+-+.+.....++..|||+||| |-.+...|+.| . +|++|+. |+.|.+.+++.....+.
T Consensus 32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G-~-~V~gvD~--S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRG-H-SVVGVEI--SELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-C-EEEEECS--CHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCC-C-cEEEEeC--CHHHHHHHHHHhhccccccchhcccccceeee
Confidence 344445555555577899999999 99999999997 5 8999999 77665555443322111
Q ss_pred ccccEEEeecccccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 456 SIDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 456 ~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
..++|+++.+...++... .....|+|+.-..+. .+.+ +...- |.+ .+.+.|||||.++
T Consensus 108 ~~~~v~~~~~d~~~l~~~--~~~~fd~i~~~~~l~---~~~~-~~r~~-~~~-~~~~~LkpgG~~~ 165 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRT--NIGKFDMIWDRGALV---AINP-GDRKC-YAD-TMFSLLGKKFQYL 165 (229)
T ss_dssp TTSSEEEEESCGGGGGGS--CCCCEEEEEESSSTT---TSCG-GGHHH-HHH-HHHHTEEEEEEEE
T ss_pred cCCcEEEEEcchhhcccc--ccCceeEEEEEEEEE---eccc-hhhHH-HHH-HHHhhcCCcceEE
Confidence 124678888766555432 235688888765433 2333 33221 222 2345799999764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.89 E-value=1e-05 Score=81.02 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=83.5
Q ss_pred cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC---CCCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG---MGRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng---l~~~I~vi~~~~~~l~~ 141 (694)
...++||-||-|.|.++..+.+... ..+|+.||+++.+++.|++....+. -..|++++.+|..+.-.
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~----------~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~ 148 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS----------IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK 148 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred CCCcceEEecCCchHHHHHHHhccc----------ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh
Confidence 3458999999999999998887643 3589999999999999999764322 24699999999776542
Q ss_pred ccCCCCCccEEEEccccccccCCCh-HHHHHHHHHhccCCCCeEEcCce
Q 044245 142 GVDIDSRADILVSEILDSELLGEGL-IPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~-l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
. ...++||+|+.+..+........ -..+.+.+++.|+|||+++-+..
T Consensus 149 ~-~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 149 N-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp T-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred h-ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 1 11258999999876643222222 23566777889999999986654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.88 E-value=2.4e-05 Score=76.40 Aligned_cols=118 Identities=9% Similarity=0.065 Sum_probs=77.0
Q ss_pred hhCCHHHHHHHHHHHHh-----------hc---cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHH
Q 044245 46 MLNDSYRNRAYRLAIDK-----------MV---TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLP 111 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~-----------~~---~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~ 111 (694)
+-+|..+.+.|.+++.. .. ....+|||||||+|.+++.++++.+ ..+++..|. |.
T Consensus 47 l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P----------~l~~~v~Dl-p~ 115 (244)
T d1fp1d2 47 MGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP----------LIKGINFDL-PQ 115 (244)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC-HH
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----------CCeEEEecc-hh
Confidence 34566666666555432 11 2247999999999999999999986 578999998 44
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 112 MVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 112 ~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
. ++..+..++|+++.+|..+ ..| ..|+++...+-+.. .+.....++..+++.|+|||+++-..
T Consensus 116 v-------i~~~~~~~ri~~~~gd~~~-----~~p-~~D~~~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 116 V-------IENAPPLSGIEHVGGDMFA-----SVP-QGDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp H-------HTTCCCCTTEEEEECCTTT-----CCC-CEEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h-------hhccCCCCCeEEecCCccc-----ccc-cceEEEEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 3345566799999999764 223 45988763222221 11122345555566899999877543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.80 E-value=1.3e-05 Score=82.14 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
++.+|||.|||+|.+.+.+.+....+ .....+++|+|+++.+++.|+.++..++. +..+.+++..... .
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~-----~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----~ 185 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELK-----GDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL----L 185 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTT-----SSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC----C
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhc-----cCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc----c
Confidence 45789999999999988887653211 01235899999999999999999988876 4566677654432 2
Q ss_pred CCCccEEEEccccc
Q 044245 146 DSRADILVSEILDS 159 (694)
Q Consensus 146 ~~~~DlIvse~~~~ 159 (694)
..+||+||++|...
T Consensus 186 ~~~fD~vi~NPPy~ 199 (328)
T d2f8la1 186 VDPVDVVISDLPVG 199 (328)
T ss_dssp CCCEEEEEEECCCS
T ss_pred cccccccccCCCCC
Confidence 36899999998653
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.76 E-value=2.7e-05 Score=74.46 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc---ccCCcc
Q 044245 405 VQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD---DTQQKK 479 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~---~l~~~~ 479 (694)
+.++||++|+| |.-+++.|++ +.-.+|+++|. .+...+.+++.++..|++ ++|+++.|.+.++-.. .....+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~--~~~~~~~a~~~~~~~gl~-~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEM--NPDYAAITQQMLNFAGLQ-DKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEES--CHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEec--cHHHHHHHHHHHHHcCCC-ccceeeeccccccccchhhcccccc
Confidence 45789999999 8888888876 22369999999 676677889999999998 9999999988765221 112356
Q ss_pred ccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 480 VDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 480 vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
+|+|.-..-. +.... +.+...+ .++|+|||.|+=
T Consensus 133 ~D~ifiD~~~---~~~~~-----~~~l~~~-~~lLkpGGvIv~ 166 (214)
T d2cl5a1 133 LDMVFLDHWK---DRYLP-----DTLLLEK-CGLLRKGTVLLA 166 (214)
T ss_dssp EEEEEECSCG---GGHHH-----HHHHHHH-TTCEEEEEEEEE
T ss_pred cceeeecccc---ccccc-----HHHHHHH-hCccCCCcEEEE
Confidence 8888765311 11111 1122222 246999997763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=3.5e-05 Score=74.29 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=57.2
Q ss_pred CCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcc---cccEEEeecccccccccccCC
Q 044245 403 GRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFS---IDRVEILQKGKKCLTMDDTQQ 477 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~---~~~i~vi~~~~~~~~~~~l~~ 477 (694)
..+|..||||||| |.++...|+. |...+|+++|. .+.+.+.+++.++.+++. .++++++.++..+... ..
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~--~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~---~~ 148 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDH--IKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA---EE 148 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---GG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcC--CHHHHHHHHHhccccCcccccccceEEEEeecccccc---hh
Confidence 3578899999999 9888777774 43569999999 666666777777766543 2578888876443322 23
Q ss_pred ccccEEEccc
Q 044245 478 KKVDLLIGEP 487 (694)
Q Consensus 478 ~~vDvivsE~ 487 (694)
...|+|+...
T Consensus 149 ~~fD~I~~~~ 158 (224)
T d1i1na_ 149 APYDAIHVGA 158 (224)
T ss_dssp CCEEEEEECS
T ss_pred hhhhhhhhhc
Confidence 5799998874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=5.9e-05 Score=73.85 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=66.3
Q ss_pred HHHHHHHHhcC-----CCCCcEEEecCC-chHH-HHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeec
Q 044245 393 MVMAMRNALQG-----RVQPLCVVADDS-VFLT-ICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQK 465 (694)
Q Consensus 393 y~~Ai~~~~~~-----~~~~~vldig~G-giLs-l~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~ 465 (694)
|...|...... .+...+||+|+| |.++ ++|.+.- ..+|+++|- ++.|.++|+++++.|+++ ++|++++.
T Consensus 44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di--~~~al~~A~~N~~~n~l~-~~~~~~~~ 119 (250)
T d2h00a1 44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEV--DDMCFNYAKKNVEQNNLS-DLIKVVKV 119 (250)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEES--CHHHHHHHHHHHHHTTCT-TTEEEEEC
T ss_pred HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCC-Cccccceec--CHHHHHHHHHHHHHhCCC-cceeeeee
Confidence 55566654422 123479999999 6444 4555554 468999999 888999999999999998 99999986
Q ss_pred cccccccccc---CCccccEEEcc-ccccC
Q 044245 466 GKKCLTMDDT---QQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 466 ~~~~~~~~~l---~~~~vDvivsE-~~~~~ 491 (694)
.....-...+ ..++.|+|||- |||..
T Consensus 120 ~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~ 149 (250)
T d2h00a1 120 PQKTLLMDALKEESEIIYDFCMCNPPFFAN 149 (250)
T ss_dssp CTTCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred ccHHhhhhhhhhcccCceeEEEecCccccc
Confidence 5433222211 23579999999 57654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.70 E-value=4.5e-05 Score=73.54 Aligned_cols=114 Identities=10% Similarity=-0.028 Sum_probs=69.8
Q ss_pred HHHHHHHHHhc---CCCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecc
Q 044245 392 SMVMAMRNALQ---GRVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~---~~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~ 466 (694)
.-.+||.+.+. ..+|..|||+||| |..+...|+ .|...+|||+|. ++.+.+.+++.++.++ ++..+..+
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~--s~~~l~~a~~~a~~~~----~~~~i~~d 130 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF--SPRVLRELVPIVEERR----NIVPILGD 130 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHSSCT----TEEEEECC
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeC--cHHHHHHHHHHHHhcC----CceEEEEE
Confidence 45567765543 4578999999999 766666555 454679999999 6665556666665543 34555555
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
....+.-......+|+|+...... + +.- .+-....++|||||.++
T Consensus 131 ~~~~~~~~~~~~~vD~i~~d~~~~------~-~~~---~~l~~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 131 ATKPEEYRALVPKVDVIFEDVAQP------T-QAK---ILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCST------T-HHH---HHHHHHHHHEEEEEEEE
T ss_pred CCCcccccccccceEEEEEEcccc------c-hHH---HHHHHHHHhcccCCeEE
Confidence 444333222346899998764211 1 111 11222235799999775
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=1.3e-05 Score=78.51 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=61.1
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
+.++..|||||||+|.|+..+++.+. +|+|+|+++.+++.+++... ..++++++++|...+..+.
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~------------~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~~~ 83 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERLD------------QLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTCS------------CEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHccCC------------ceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcccc
Confidence 45688999999999999999998864 89999999999998876332 2358999999998765422
Q ss_pred CC--CCCccEEEEccccc
Q 044245 144 DI--DSRADILVSEILDS 159 (694)
Q Consensus 144 ~l--~~~~DlIvse~~~~ 159 (694)
.. ..+.-.|++|+.++
T Consensus 84 ~~~~~~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 84 LAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHTSCEEEEEECCTT
T ss_pred cccccCCCeEEEecchHH
Confidence 10 12234778886664
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.69 E-value=2.2e-05 Score=76.35 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC--------
Q 044245 53 NRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG-------- 124 (694)
Q Consensus 53 ~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng-------- 124 (694)
.+...+|+.-......+|||.-||.|..++.+|..|. +|+++|.|+.+....+..++...
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~------------~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~ 142 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC------------RVRMLERNPVVAALLDDGLARGYADAEIGGW 142 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC------------CEEEEECCHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC------------EEEEEccCHHHHHHHHHHHHHHHhCchhHHH
Confidence 3444444432111234899999999999999999985 89999999999888877665432
Q ss_pred CCCcEEEEeccccccccccCCCCCccEEEEcccccc
Q 044245 125 MGRNIKVINKRSDELEVGVDIDSRADILVSEILDSE 160 (694)
Q Consensus 125 l~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~ 160 (694)
...|++++++|+.++.. ....+||+|..+||...
T Consensus 143 ~~~ri~li~~Ds~~~L~--~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 143 LQERLQLIHASSLTALT--DITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHHEEEEESCHHHHST--TCSSCCSEEEECCCCCC
T ss_pred HhhhheeecCcHHHHHh--ccCCCCCEEEECCCCcc
Confidence 12489999999877542 33467999999998743
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.68 E-value=6.1e-05 Score=73.84 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+.+.||||||| |.++...|+...-.+|+.++. .++. ..+++.+...|+. ++|+++.++..+ .. +.+.|+|
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~--~~~~-~~a~~~~~~~~~~-~rv~~~~~D~~~----~~-~~~~D~v 150 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM--AGTV-DTARSYLKDEGLS-DRVDVVEGDFFE----PL-PRKADAI 150 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC--TTHH-HHHHHHHHHTTCT-TTEEEEECCTTS----CC-SSCEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC--HHHH-HHHHHHHHHhhcc-cchhhccccchh----hc-ccchhhe
Confidence 34789999999 877777776633457777765 4444 4567777788887 899999986422 22 4678999
Q ss_pred EccccccCCccccCcch-hhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQN-LRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~-l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++..... .++.+. .. ..+ +..+.|||||+++
T Consensus 151 ~~~~vlh----~~~d~~~~~--~L~-~~~~~LkPGG~l~ 182 (253)
T d1tw3a2 151 ILSFVLL----NWPDHDAVR--ILT-RCAEALEPGGRIL 182 (253)
T ss_dssp EEESCGG----GSCHHHHHH--HHH-HHHHTEEEEEEEE
T ss_pred eeccccc----cCCchhhHH--HHH-HHHHhcCCCcEEE
Confidence 8764211 122111 11 122 2234699999765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.60 E-value=7e-05 Score=73.50 Aligned_cols=110 Identities=11% Similarity=0.013 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCCCcEEEecCC-chHHH-HHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 393 MVMAMRNALQGRVQPLCVVADDS-VFLTI-CVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 393 y~~Ai~~~~~~~~~~~vldig~G-giLsl-~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
.+..|..... .+++.|||+||| |-++. ++.+. ..+|+++|. ++.+.+.|++.... . .+++++.+..+++
T Consensus 82 s~~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~--s~~~l~~a~~~~~~--~--~~~~~~~~d~~~~ 152 (254)
T d1xtpa_ 82 SRNFIASLPG-HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEP--VKHMLEEAKRELAG--M--PVGKFILASMETA 152 (254)
T ss_dssp HHHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEES--CHHHHHHHHHHTTT--S--SEEEEEESCGGGC
T ss_pred HHHHHhhCCC-CCCCeEEEecccCChhhHHHHhhc--CceEEEEcC--CHHHHHhhhccccc--c--ccceeEEcccccc
Confidence 3444444332 356789999999 87765 45564 579999999 66655666654432 2 4688888877766
Q ss_pred cccccCCccccEEEccccccCCccccCcch-hhHHHHHhhcccccCCCceEE
Q 044245 471 TMDDTQQKKVDLLIGEPYYFGNDGMLPWQN-LRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~~~~~~e~~l~w~~-l~f~~~r~~~~~~L~p~g~i~ 521 (694)
+. +.++.|+|++-+.+. .++=.. ..| -.+..++|+|||.++
T Consensus 153 ~~---~~~~fD~I~~~~vl~----hl~d~d~~~~---l~~~~~~LkpgG~ii 194 (254)
T d1xtpa_ 153 TL---PPNTYDLIVIQWTAI----YLTDADFVKF---FKHCQQALTPNGYIF 194 (254)
T ss_dssp CC---CSSCEEEEEEESCGG----GSCHHHHHHH---HHHHHHHEEEEEEEE
T ss_pred cc---CCCccceEEeecccc----ccchhhhHHH---HHHHHHhcCCCcEEE
Confidence 53 357899999975322 122011 222 122334799999775
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.58 E-value=0.00017 Score=70.18 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHhhCCHHHHHHHHHHHHhh-------------c-cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcC
Q 044245 43 YLDMLNDSYRNRAYRLAIDKM-------------V-TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACES 108 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~~-------------~-~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~ 108 (694)
|..+-+|..+.+.|.+++... . ....+|||||||+|.++..++++.+ ..+++..|.
T Consensus 43 ~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P----------~l~~~v~Dl 112 (244)
T d1fp2a2 43 WDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFP----------KLKCIVFDR 112 (244)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCT----------TCEEEEEEC
T ss_pred HHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCC----------CCeEEEecC
Confidence 333446777777777766421 1 1237899999999999999999976 569999998
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC---CeEE
Q 044245 109 YLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN---PLTV 185 (694)
Q Consensus 109 s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~---G~ii 185 (694)
++.+ +..+..+||+++.+|..+- . ..+|+++.-.+-+.. .+..-..++..+++.|+|| |+++
T Consensus 113 -p~vi-------~~~~~~~rv~~~~gD~f~~-----~-p~aD~~~l~~vLHdw-~d~~~~~iL~~~~~al~pgg~~~~ll 177 (244)
T d1fp2a2 113 -PQVV-------ENLSGSNNLTYVGGDMFTS-----I-PNADAVLLKYILHNW-TDKDCLRILKKCKEAVTNDGKRGKVT 177 (244)
T ss_dssp -HHHH-------TTCCCBTTEEEEECCTTTC-----C-CCCSEEEEESCGGGS-CHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred -HHHH-------HhCcccCceEEEecCcccC-----C-CCCcEEEEEeecccC-ChHHHHHHHHHHHHHcCcccCCcEEE
Confidence 4443 3445678999999998652 1 358988863222211 1112224555556689998 5554
Q ss_pred c
Q 044245 186 P 186 (694)
Q Consensus 186 P 186 (694)
.
T Consensus 178 i 178 (244)
T d1fp2a2 178 I 178 (244)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.53 E-value=9.2e-05 Score=69.45 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCH----HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHH--------------HH----cC
Q 044245 67 SCHVLDIGAGTGL----LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVL--------------HV----NG 124 (694)
Q Consensus 67 ~~~VLDiG~GtG~----lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~--------------~~----ng 124 (694)
..+||++|||||- +++++..+.... ....+|+|.|+|+.+++.|++-. .. .+
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~------~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~ 98 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMA------PGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT 98 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSC------TTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhc------CCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecC
Confidence 4589999999994 667666654311 01357999999999999987422 00 01
Q ss_pred CC------------CcEEEEeccccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCce
Q 044245 125 MG------------RNIKVINKRSDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCRV 189 (694)
Q Consensus 125 l~------------~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~~ 189 (694)
.. ..+.+...+..+.. ....++||+|+|--+-.+ +.+.....++..+.+.|+|||.++-..+
T Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~fDvI~CRNVLiY-f~~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 99 GPHEGLVRVRQELANYVEFSSVNLLEKQ--YNVPGPFDAIFCRNVMIY-FDKTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp TTSCSEEEECHHHHTTEEEEECCTTCSS--CCCCCCEEEEEECSSGGG-SCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred CCccceeehHHHHHHHHHHhhhhccccc--cCCCCCccEEEeehhHHh-cCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 00 11222222222211 112368999999422211 1334456778888889999999876533
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.45 E-value=0.00016 Score=75.21 Aligned_cols=52 Identities=8% Similarity=-0.155 Sum_probs=38.4
Q ss_pred HHHhcCCCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 398 RNALQGRVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 398 ~~~~~~~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
.+.....+|.+||||||| |-+.+.||+ .| +++|++||- ++.+.++|++.++.
T Consensus 209 l~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDi--S~~~i~~Ak~~~~e 262 (406)
T d1u2za_ 209 YQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEI--MDDASDLTILQYEE 262 (406)
T ss_dssp HHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEEC--CHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeC--CHHHHHHHHHHHHH
Confidence 334445678999999999 866666665 55 789999999 77666777666554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00018 Score=74.02 Aligned_cols=91 Identities=13% Similarity=-0.014 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
+...+.+.+.....++..|+|+=|| |.+++..|+. +++|+++|. ++.|.+.|+++++.||+ ++++++.+.+++
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~--~~~ai~~A~~na~~n~i--~n~~~~~~~~~~ 271 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEG--VPALVEKGQQNARLNGL--QNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEES--CHHHHHHHHHHHHHTTC--CSEEEEECCTTS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccC--cHHHHHHHHHhHHhccc--ccceeeecchhh
Confidence 3444445555555567889999999 9999999986 589999999 77787889999999999 489999998775
Q ss_pred cccc-ccCCccccEEEccc
Q 044245 470 LTMD-DTQQKKVDLLIGEP 487 (694)
Q Consensus 470 ~~~~-~l~~~~vDvivsE~ 487 (694)
.-.. .....+.|+||-.|
T Consensus 272 ~~~~~~~~~~~~d~vilDP 290 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDP 290 (358)
T ss_dssp CCSSSGGGTTCCSEEEECC
T ss_pred hhhhhhhhhccCceEEeCC
Confidence 4322 12245689999986
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.41 E-value=5.7e-05 Score=72.60 Aligned_cols=80 Identities=9% Similarity=0.030 Sum_probs=53.1
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCC------ceEEEcCCCcChhHHHHHHHHhccCCcc---cccEEEeecccccccc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKT------AHVLSLLPGLGDKGAQYLRTVADPNCFS---IDRVEILQKGKKCLTM 472 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a------~~V~ave~~~~~~~~~~~~~i~~~N~l~---~~~i~vi~~~~~~~~~ 472 (694)
..++..||+||+| |.++...|+.-|+ .+|+++|. .+...+.+++.+..+++. .++|++++++..+...
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~--~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEH--QAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEES--CHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEec--CHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence 4578899999999 8887777775212 37999999 554445565555443321 1589999886543322
Q ss_pred cccCCccccEEEccc
Q 044245 473 DDTQQKKVDLLIGEP 487 (694)
Q Consensus 473 ~~l~~~~vDvivsE~ 487 (694)
+..+.|.|+...
T Consensus 156 ---~~~~fD~Iiv~~ 167 (223)
T d1r18a_ 156 ---PNAPYNAIHVGA 167 (223)
T ss_dssp ---GGCSEEEEEECS
T ss_pred ---cccceeeEEEEe
Confidence 235799998874
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.39 E-value=0.00037 Score=67.63 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=74.2
Q ss_pred HHHhhCCHHHHHHHHHHHHh-----------h--ccC-CCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcC
Q 044245 43 YLDMLNDSYRNRAYRLAIDK-----------M--VTK-SCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACES 108 (694)
Q Consensus 43 ~~~ml~D~~r~~~y~~ai~~-----------~--~~~-~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~ 108 (694)
|..+-.|..+.+.|.+++.. . ..+ ..+|||||||+|.+++.++++.+ ..+++..|.
T Consensus 44 ~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P----------~l~~~v~Dl 113 (243)
T d1kyza2 44 FEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP----------TIKGINFDL 113 (243)
T ss_dssp HHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT----------TSEEEEEEC
T ss_pred HHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----------CCeEEEccc
Confidence 33445566666666665542 1 112 36899999999999999999986 579999998
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCCccEEEEccccccccC--CChHHHHHHHHHhccCCCCeEEc
Q 044245 109 YLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSRADILVSEILDSELLG--EGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 109 s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~~DlIvse~~~~~l~~--e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
. ..+ +.....++++++.+|..+- .| ..|+.+.- +.+.. +.....++...++.|+|||+++-
T Consensus 114 p-~vi-------~~~~~~~r~~~~~~d~~~~-----~P-~ad~~~l~---~vlh~~~d~~~~~iL~~~~~al~pgg~~li 176 (243)
T d1kyza2 114 P-HVI-------EDAPSYPGVEHVGGDMFVS-----IP-KADAVFMK---WICHDWSDEHCLKFLKNCYEALPDNGKVIV 176 (243)
T ss_dssp T-TTT-------TTCCCCTTEEEEECCTTTC-----CC-CCSCEECS---SSSTTSCHHHHHHHHHHHHHHCCSSSCEEE
T ss_pred H-Hhh-------hhcccCCceEEeccccccc-----CC-CcceEEEE---EEeecCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 4 333 3344557999999997652 22 24544431 21111 11233455566678999998763
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00013 Score=67.54 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=68.4
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++..||||||+.|.++..+++... +..+|+++|..+ | ..+ +++.+++++..+....
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~---------~~~~v~~vDl~~-~----------~~i-~~~~~~~~d~~~~~~~ 77 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIG---------GKGRIIACDLLP-M----------DPI-VGVDFLQGDFRDELVM 77 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHC---------TTCEEEEEESSC-C----------CCC-TTEEEEESCTTSHHHH
T ss_pred ccCCCCeEEEEeccCCcceEEEEeecc---------ccceEEEeeccc-c----------ccc-CCceEeecccccchhh
Confidence 367889999999999999999988765 247899999854 1 233 3788999998764321
Q ss_pred c-----CCCCCccEEEEccccccccCCChHH---------HHHHHHHhccCCCCeEEcC
Q 044245 143 V-----DIDSRADILVSEILDSELLGEGLIP---------TLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 143 ~-----~l~~~~DlIvse~~~~~l~~e~~l~---------~l~~~~~~~L~p~G~iiP~ 187 (694)
. ....++|+|+|+..... -+....+ ..+....++|++||.++--
T Consensus 78 ~~~~~~~~~~~~DlVlSD~ap~~-sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 78 KALLERVGDSKVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhccCcceeEEEecccchh-cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 1 12358999999853321 1211111 2223345689999988743
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=0.00015 Score=68.30 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=55.8
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++..+ ++|+++|. ++.+.+.++ . ..++++++..+++.. +.++.|+|
T Consensus 36 ~~~~vLDiGcG~G~~~~~~------~~~~giD~--s~~~~~~a~----~-----~~~~~~~~d~~~l~~---~~~~fD~I 95 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL------KIKIGVEP--SERMAEIAR----K-----RGVFVLKGTAENLPL---KDESFDFA 95 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH------TCCEEEES--CHHHHHHHH----H-----TTCEEEECBTTBCCS---CTTCEEEE
T ss_pred CCCeEEEECCCCccccccc------ceEEEEeC--Chhhccccc----c-----ccccccccccccccc---cccccccc
Confidence 45579999999 8665433 35689999 665544443 2 247889998877754 35789999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEEc
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P 522 (694)
++--... - ++ +--. +. ..+.+.|+|||.++-
T Consensus 96 ~~~~~l~---h-~~-d~~~--~l-~~~~~~L~pgG~l~i 126 (208)
T d1vlma_ 96 LMVTTIC---F-VD-DPER--AL-KEAYRILKKGGYLIV 126 (208)
T ss_dssp EEESCGG---G-SS-CHHH--HH-HHHHHHEEEEEEEEE
T ss_pred ccccccc---c-cc-cccc--ch-hhhhhcCCCCceEEE
Confidence 9863211 1 22 1111 11 122346999997763
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=0.00041 Score=65.43 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 406 QPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
+.+||||||| | .+..+|.+.- -..|+++|. +..+...+.+.++.+|+ ++|.++.++...+. +.+++..+|.|
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~--~~~~i~~a~~~~~~~~l--~Nv~~~~~Da~~l~-~~~~~~~~d~v 103 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIEL--FKSVIVTAVQKVKDSEA--QNVKLLNIDADTLT-DVFEPGEVKRV 103 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECS--CHHHHHHHHHHHHHSCC--SSEEEECCCGGGHH-HHCCTTSCCEE
T ss_pred CceEEEEEecCcHHHHHHHHhCC-CCcEEEeec--chHHHHHHHHHHHHHhc--cCchhcccchhhhh-cccCchhhhcc
Confidence 4689999999 7 4555555543 578999999 44444455666778898 47999999887764 23445667765
Q ss_pred E
Q 044245 484 I 484 (694)
Q Consensus 484 v 484 (694)
.
T Consensus 104 ~ 104 (204)
T d2fcaa1 104 Y 104 (204)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.00043 Score=68.80 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=84.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||+++|.|.=+..++..+. .++|+|+|.++.-++.+++++++.|+. ++.+...+......
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~----------~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~-- 166 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAP----------EAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQW-- 166 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCT----------TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHH--
T ss_pred ccccceeEeccCccccchhhhhhhhh----------hhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchh--
Confidence 56789999999999988888887764 478999999999999999999999986 45555444332221
Q ss_pred CCCCCccEEEEccc--cccccC--CCh--------HH-------HHHHHHHhccCCCCeEEcCceEEEEEEecchh
Q 044245 144 DIDSRADILVSEIL--DSELLG--EGL--------IP-------TLQHAHDRLLVENPLTVPCRVTTYGQLVESTF 200 (694)
Q Consensus 144 ~l~~~~DlIvse~~--~~~l~~--e~~--------l~-------~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~ 200 (694)
..+++||.|+.+.. +.+.+. .+. +. .++...-++|+|||+++=..+++. +.|.+.
T Consensus 167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~--~~ENE~ 240 (284)
T d1sqga2 167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL--PEENSL 240 (284)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC--GGGTHH
T ss_pred cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc--hhhCHH
Confidence 12368999998762 223221 111 11 344445568999999986655554 556553
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.28 E-value=0.00072 Score=68.05 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=87.3
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..+|.+|||++||.|.=+..++.... +.+.++|+|.++.-++.+++++++.|.. +|.++..+...+..
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~---------~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~-- 181 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMR---------NDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE-- 181 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTT---------TCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG--
T ss_pred CCccceeeecccchhhhhHhhhhhcc---------cccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccccc--
Confidence 56789999999999988777777654 2478999999999999999999999986 78888877766542
Q ss_pred CCCCCccEEEEccc--cccccCCC----------hHH-------HHHHHHHhccCCCCeEEcCceEEEEEEecchh
Q 044245 144 DIDSRADILVSEIL--DSELLGEG----------LIP-------TLQHAHDRLLVENPLTVPCRVTTYGQLVESTF 200 (694)
Q Consensus 144 ~l~~~~DlIvse~~--~~~l~~e~----------~l~-------~l~~~~~~~L~p~G~iiP~~~~~~~~~ve~~~ 200 (694)
...+||.|+.+.. +.+.+... .+. .++...-++|+|||+++=..++++ +.|.+.
T Consensus 182 -~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~--~eENE~ 254 (313)
T d1ixka_ 182 -LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE--PEENEF 254 (313)
T ss_dssp -GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC--GGGTHH
T ss_pred -ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC--hHhHHH
Confidence 3468999998763 22222111 011 233344468899998886666655 556553
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.0001 Score=71.83 Aligned_cols=49 Identities=8% Similarity=-0.137 Sum_probs=40.0
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF 455 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l 455 (694)
.+++.||||||| |.++++.|+.| +++|++++- ++.+.+.|++.++.++.
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~--S~~~i~~a~~~~~~~~~ 99 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDF--TDRNREELEKWLKKEPG 99 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEES--CHHHHHHHHHHHHTCTT
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecC--CHHHHHHHHHHHhhccc
Confidence 356789999999 99888888775 789999999 77777788887776654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00055 Score=68.33 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=67.9
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..+|.+|||++||.|.=+..+|.... +.++|+|+|.++.-++.++++++..|+. ++.+...|...+....
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~---------~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~ 161 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLK---------NQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD 161 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT---------TCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred CCccceEEecccchhhHHHHHHHHhc---------CCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc
Confidence 46789999999999998777776643 2479999999999999999999999996 7999998887765322
Q ss_pred CCCCCccEEEEccc
Q 044245 144 DIDSRADILVSEIL 157 (694)
Q Consensus 144 ~l~~~~DlIvse~~ 157 (694)
...++||.|+.+..
T Consensus 162 ~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 162 PRYHEVHYILLDPS 175 (293)
T ss_dssp GGGTTEEEEEECCC
T ss_pred cccceeeEEeecCc
Confidence 22368999998863
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.22 E-value=0.00035 Score=64.60 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=73.5
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc-
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG- 142 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~- 142 (694)
+.+|..++|..+|.|..+..+.+.+ ++|+|+|.++.+++.|++. ..+++.+++++..++..-
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~------------~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l 78 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERG------------GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHL 78 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTT------------CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHH
T ss_pred CCCCCEEEEeCCCCcHHHHHHhccc------------CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHH
Confidence 5678999999999999998888864 5999999999999888753 335899999998876521
Q ss_pred -cCCCCCccEEEEccccccc--cC--CC---hHHHHHHHHHhccCCCCeEE
Q 044245 143 -VDIDSRADILVSEILDSEL--LG--EG---LIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 -~~l~~~~DlIvse~~~~~l--~~--e~---~l~~l~~~~~~~L~p~G~ii 185 (694)
....+++|.|+.++ |... +. +. .+...++....+|++||+++
T Consensus 79 ~~~~~~~vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ 128 (182)
T d1wg8a2 79 AALGVERVDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLV 128 (182)
T ss_dssp HHTTCSCEEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHcCCCccCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEE
Confidence 11126799999874 2111 00 11 12234455566899998754
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.21 E-value=0.00033 Score=67.36 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=79.8
Q ss_pred HhhCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcC
Q 044245 45 DMLNDSYRNRAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNG 124 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ng 124 (694)
.+++...-...|.+.|.+. +.++||+||++.|.-+++.+.... ...++++|+++|+++.....+. .
T Consensus 61 p~~k~p~d~~~~~eli~~~--KPk~ILEIGv~~GgS~~~~a~~l~------~~~~~~kI~giDId~~~~~~~~------~ 126 (232)
T d2bm8a1 61 RMLKDPDTQAVYHDMLWEL--RPRTIVELGVYNGGSLAWFRDLTK------IMGIDCQVIGIDRDLSRCQIPA------S 126 (232)
T ss_dssp ECCSCHHHHHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHHHHH------HTTCCCEEEEEESCCTTCCCCG------G
T ss_pred ecccCHHHHHHHHHHHHHh--CCCEEEEECCCCchHHHHHHHHHH------hcCCCceEEecCcChhhhhhhh------c
Confidence 5678887788888888874 468999999999977666664321 0012479999999865433221 1
Q ss_pred CCCcEEEEeccccccccccCCC-CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 125 MGRNIKVINKRSDELEVGVDID-SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 125 l~~~I~vi~~~~~~l~~~~~l~-~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
..++|+++++++.+...-..+. ..+|+|+-+ .....+..+..+. ..++|++||.++-+-
T Consensus 127 ~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID---~~H~~~~v~~~~~--~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 127 DMENITLHQGDCSDLTTFEHLREMAHPLIFID---NAHANTFNIMKWA--VDHLLEEGDYFIIED 186 (232)
T ss_dssp GCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE---SSCSSHHHHHHHH--HHHTCCTTCEEEECS
T ss_pred cccceeeeecccccHHHHHHHHhcCCCEEEEc---CCcchHHHHHHHH--HhcccCcCCEEEEEc
Confidence 2358999999987654322222 357887754 3333333333332 346999999887543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.19 E-value=0.00025 Score=67.33 Aligned_cols=72 Identities=15% Similarity=0.009 Sum_probs=52.7
Q ss_pred ccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccccc
Q 044245 64 VTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGV 143 (694)
Q Consensus 64 ~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~ 143 (694)
..++.+|||.|||+|.+...+.++.. ...+++++|+++.++.. ..+..+++++.....
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~---------~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~--- 74 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHG---------TAYRFVGVEIDPKALDL----------PPWAEGILADFLLWE--- 74 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHC---------SCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCC---
T ss_pred CCCcCEEEECCCchHHHHHHHHHhcc---------ccceEEeeecCHHHHhh----------cccceeeeeehhccc---
Confidence 34678999999999998877776644 23689999999865433 235677787766543
Q ss_pred CCCCCccEEEEcccc
Q 044245 144 DIDSRADILVSEILD 158 (694)
Q Consensus 144 ~l~~~~DlIvse~~~ 158 (694)
...+||++++++..
T Consensus 75 -~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 75 -PGEAFDLILGNPPY 88 (223)
T ss_dssp -CSSCEEEEEECCCC
T ss_pred -cccccceecccCcc
Confidence 23689999999864
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00043 Score=65.29 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=72.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccE
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
++++.|+|+|+| |+=++..|-+.--.+|+.+|+ +..-...++++++.-|++ +|+++++++|++.. ..+.|+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves--~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~~----~~~fD~ 135 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDS--LGKRVRFLRQVQHELKLE--NIEPVQSRVEEFPS----EPPFDG 135 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEES--CHHHHHHHHHHHHHTTCS--SEEEEECCTTTSCC----CSCEEE
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEec--chHHHHHHHHHHHHcCCc--ceeeeccchhhhcc----ccccce
Confidence 456789999999 888877776642479999999 454445779999999994 79999999997753 357899
Q ss_pred EEccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceE
Q 044245 483 LIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKG 525 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a 525 (694)
|+|=-| -+.+.+.- +. .++++++|.++.-++
T Consensus 136 V~sRA~-------~~~~~ll~-~~----~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 136 VISRAF-------ASLNDMVS-WC----HHLPGEQGRFYALKG 166 (207)
T ss_dssp EECSCS-------SSHHHHHH-HH----TTSEEEEEEEEEEES
T ss_pred ehhhhh-------cCHHHHHH-HH----HHhcCCCcEEEEECC
Confidence 999643 12122210 22 336899988666554
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.001 Score=65.31 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=59.5
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
++..||||||| |.++...|+.+.-.+|++++. ++.+.+.+++. . .+++++.+..+++.. +.+.+|+|
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~--s~~~~~~a~~~-----~--~~~~~~~~d~~~l~~---~~~sfD~v 151 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDV--SKVAIKAAAKR-----Y--PQVTFCVASSHRLPF---SDTSMDAI 151 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEES--CHHHHHHHHHH-----C--TTSEEEECCTTSCSB---CTTCEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecc--hHhhhhhhhcc-----c--ccccceeeehhhccC---CCCCEEEE
Confidence 56789999999 877766666643468999999 66555554432 2 357888887776654 35779999
Q ss_pred EccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 484 IGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 484 vsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
++-. .+ ..+ -+ +.+.|||||.++
T Consensus 152 ~~~~--------~~-~~~---~e---~~rvLkpgG~l~ 174 (268)
T d1p91a_ 152 IRIY--------AP-CKA---EE---LARVVKPGGWVI 174 (268)
T ss_dssp EEES--------CC-CCH---HH---HHHHEEEEEEEE
T ss_pred eecC--------CH-HHH---HH---HHHHhCCCcEEE
Confidence 8732 11 112 11 234699999774
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.08 E-value=0.001 Score=64.93 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHH-----------HHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 385 GDGEWRLSMVMAMR-----------NALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~-----------~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
.|..+.+.|.++.. +....-..+.||||||| |.++.-.+++--.-+++.++- .+++ ..+++.++.
T Consensus 50 ~~p~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl--p~~~-~~a~~~~~~ 126 (256)
T d1qzza2 50 ADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL--AGPA-ERARRRFAD 126 (256)
T ss_dssp HCHHHHHHHHHTCGGGSTTTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC--HHHH-HHHHHHHHH
T ss_pred hCHHHHHHHHHHHHhhHHHHHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC--hHHH-HHHHHHHhh
Confidence 35666666665533 22221223689999999 877777776522347888875 4544 466777788
Q ss_pred CCcccccEEEeecccccccccccCCccccEEEccc
Q 044245 453 NCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 453 N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~ 487 (694)
.|+. ++|+++.+... . .+ +.+.|+++.-.
T Consensus 127 ~~~~-~ri~~~~~d~~---~-~~-p~~~D~v~~~~ 155 (256)
T d1qzza2 127 AGLA-DRVTVAEGDFF---K-PL-PVTADVVLLSF 155 (256)
T ss_dssp TTCT-TTEEEEECCTT---S-CC-SCCEEEEEEES
T ss_pred cCCc-ceeeeeeeecc---c-cc-cccchhhhccc
Confidence 8888 89999988532 1 23 45689988764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00045 Score=67.82 Aligned_cols=47 Identities=6% Similarity=-0.171 Sum_probs=36.5
Q ss_pred CCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc
Q 044245 403 GRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP 452 (694)
Q Consensus 403 ~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~ 452 (694)
..+++.|||+||| |+++++.|..+ .++|++++. ++.+.+.+++.++.
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~--S~~~i~~~~~~~~~ 99 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDF--LEVNRQELGRWLQE 99 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECS--CHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeC--CHHHHHHHHHHHhc
Confidence 3467899999999 99987666554 679999999 77777777776654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.06 E-value=0.001 Score=63.58 Aligned_cols=90 Identities=4% Similarity=0.012 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...|-+.+.+.. +.+.||+||++ |.-+++.|++ +.-.+|+++|. .+...++|++.++..|+. ++|+++.+..
T Consensus 47 ~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~--~~~~~~~A~~~~~~~g~~-~~i~~~~g~a 120 (227)
T d1susa1 47 EGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDI--NKENYELGLPVIKKAGVD-HKIDFREGPA 120 (227)
T ss_dssp HHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEES--CCHHHHHHHHHHHHTTCG-GGEEEEESCH
T ss_pred HHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEec--cchhHHHHHHHHHHhccc-cceeeeehHH
Confidence 344555555555 34689999999 8888888875 22359999999 566667889999999998 9999999987
Q ss_pred cccccccc-----CCccccEEEcc
Q 044245 468 KCLTMDDT-----QQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l-----~~~~vDvivsE 486 (694)
.++-. .+ ..++.|.|.-.
T Consensus 121 ~~~L~-~l~~~~~~~~~fD~iFiD 143 (227)
T d1susa1 121 LPVLD-EMIKDEKNHGSYDFIFVD 143 (227)
T ss_dssp HHHHH-HHHHCGGGTTCBSEEEEC
T ss_pred HHHHH-HHHhccccCCceeEEEec
Confidence 65421 11 13468988875
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00055 Score=65.24 Aligned_cols=91 Identities=5% Similarity=0.031 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 390 RLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 390 ~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
...+-..|.+.. +.+.||+||+| |.-++..|++ ..-.+|+++|. .+...+.|++.++..|++ ++|+++.|.+
T Consensus 47 ~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~--~~~~~~~A~~~~~~ag~~-~~i~~~~Gda 120 (219)
T d2avda1 47 QAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEV--DAQPPELGRPLWRQAEAE-HKIDLRLKPA 120 (219)
T ss_dssp HHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CSHHHHHHHHHHHHTTCT-TTEEEEESCH
T ss_pred HHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEee--chhHHHHHHHHHHhcCcc-ceEEEEEeeh
Confidence 344444555544 45789999999 8888888876 11259999999 666677889999999998 9999999986
Q ss_pred cccccc---ccCCccccEEEcc
Q 044245 468 KCLTMD---DTQQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~---~l~~~~vDvivsE 486 (694)
.+.-.. .......|+|...
T Consensus 121 ~e~l~~~~~~~~~~~fD~ifiD 142 (219)
T d2avda1 121 LETLDELLAAGEAGTFDVAVVD 142 (219)
T ss_dssp HHHHHHHHHTTCTTCEEEEEEC
T ss_pred hhcchhhhhhcccCCccEEEEe
Confidence 543221 1123568988875
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.94 E-value=0.0021 Score=60.38 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=51.9
Q ss_pred CCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEE
Q 044245 406 QPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLL 483 (694)
Q Consensus 406 ~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvi 483 (694)
..+||||||| | .+..+|.+.. -..++++|. ++.....+.+-++.+|++ +|.++.++.+++. +.++...+|.|
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~--~~~~v~~a~~~~~~~~l~--Ni~~~~~da~~l~-~~~~~~~~~~i 105 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDI--QKSVLSYALDKVLEVGVP--NIKLLWVDGSDLT-DYFEDGEIDRL 105 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEES--CHHHHHHHHHHHHHHCCS--SEEEEECCSSCGG-GTSCTTCCSEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCC-CCceEEEec--cHHHHHHHHHhhhhhccc--cceeeecCHHHHh-hhccCCceehh
Confidence 4589999999 7 5555565554 578999999 443333444556678884 7999999988775 34556677866
Q ss_pred Ec
Q 044245 484 IG 485 (694)
Q Consensus 484 vs 485 (694)
..
T Consensus 106 ~i 107 (204)
T d1yzha1 106 YL 107 (204)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.80 E-value=0.0023 Score=67.20 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHcCCCCCCcc---CCCccEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEeccccccccc
Q 044245 67 SCHVLDIGAGTGLLSMMAARAMGSSDSTTS---LNTKGMVTACESYLPMVKLMKKVLHVNGMGR-NIKVINKRSDELEVG 142 (694)
Q Consensus 67 ~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~---~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~-~I~vi~~~~~~l~~~ 142 (694)
+.+|+|-.||+|.+.+.+.+.......... ......++|+|+++.+...|+.+...+|... .+.+..++..+-
T Consensus 163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--- 239 (425)
T d2okca1 163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--- 239 (425)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS---
T ss_pred cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh---
Confidence 689999999999998888876531100000 0001359999999999999999998888753 456667776542
Q ss_pred cCCCCCccEEEEccccc
Q 044245 143 VDIDSRADILVSEILDS 159 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~ 159 (694)
....+||+|+++|...
T Consensus 240 -~~~~~fD~Ii~NPPfg 255 (425)
T d2okca1 240 -EPSTLVDVILANPPFG 255 (425)
T ss_dssp -CCSSCEEEEEECCCSS
T ss_pred -hcccccceEEecCCCC
Confidence 2236899999999664
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.62 E-value=0.002 Score=64.62 Aligned_cols=110 Identities=7% Similarity=0.020 Sum_probs=68.2
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhc---cCCcccccEEEeecccccccccccCCccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVAD---PNCFSIDRVEILQKGKKCLTMDDTQQKKV 480 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~---~N~l~~~~i~vi~~~~~~~~~~~l~~~~v 480 (694)
..+.||+||.| |.++..+.+.....+|..||- .+...+++++... .+-++..|++++.++..+.-.. ..++.
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEi--D~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~--~~~~y 152 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDI--DGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERY 152 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEES--CHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecC--CHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh--cCCcc
Confidence 34789999999 888887777754789999998 5655566666542 1223336899998876544221 24789
Q ss_pred cEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEEc
Q 044245 481 DLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIMP 522 (694)
Q Consensus 481 DvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~P 522 (694)
|+||...+....+.-.+ ..| .|+.. .++.|+|||+++=
T Consensus 153 DvIi~D~~dp~~~~~~~-~~L~t~eF~~~---~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPA-RLLYTVEFYRL---VKAHLNPGGVMGM 193 (312)
T ss_dssp EEEEEECCCCBSTTCGG-GGGSSHHHHHH---HHHTEEEEEEEEE
T ss_pred cEEEEeCCCcccccchh-hhhhhHHHHHH---HHHhcCCCceEEE
Confidence 99998753221111111 222 23221 2346999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.61 E-value=0.0032 Score=60.42 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
-|.+.....++..||+||+| |.|+...++.| ++|+|+|- .+...+.+++.... . +++++++++.-++..
T Consensus 12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~--D~~l~~~l~~~~~~--~--~n~~i~~~D~l~~~~-- 81 (235)
T d1qama_ 12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEI--DHKLCKTTENKLVD--H--DNFQVLNKDILQFKF-- 81 (235)
T ss_dssp HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECS--CHHHHHHHHHHTTT--C--CSEEEECCCGGGCCC--
T ss_pred HHHHhcCCCCCCeEEEECCCchHHHHHHHhCc--CceEEEee--ccchHHHHHHHhhc--c--cchhhhhhhhhhccc--
Confidence 44455555578899999999 99998888884 78999999 55544555543332 2 689999998766543
Q ss_pred cCCccccEEEcc-ccccC
Q 044245 475 TQQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 475 l~~~~vDvivsE-~~~~~ 491 (694)
+..+...|||- ||+-+
T Consensus 82 -~~~~~~~vv~NLPYnIs 98 (235)
T d1qama_ 82 -PKNQSYKIFGNIPYNIS 98 (235)
T ss_dssp -CSSCCCEEEEECCGGGH
T ss_pred -cccccceeeeeehhhhh
Confidence 23344578887 77653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.57 E-value=0.0014 Score=62.90 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=72.6
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCccccEEE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLI 484 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDviv 484 (694)
.+.++|||+| |+-++..|=+-...+|+-+|+ +..=...++.+++.-||+ +++++++++|++....-..++.|+|+
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves--~~KK~~FL~~v~~~L~L~--n~~i~~~R~E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDS--LNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYDIVT 146 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEES--CHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecc--hHHHHHHHHHHHHHhCCC--CcEEEeehhhhccccccccccceEEE
Confidence 4689999999 888777775422689999999 444345678899999994 79999999987754322246799999
Q ss_pred ccccccCCccccCcchhhHHHHHhhcccccCCCceEEcceEE
Q 044245 485 GEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIMPFKGI 526 (694)
Q Consensus 485 sE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~P~~a~ 526 (694)
|=-+-. ++ .+.- +. .++++++|.++--++.
T Consensus 147 sRAva~-----l~--~ll~-~~----~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 147 ARAVAR-----LS--VLSE-LC----LPLVKKNGLFVALKAA 176 (239)
T ss_dssp EECCSC-----HH--HHHH-HH----GGGEEEEEEEEEEECC
T ss_pred EhhhhC-----HH--HHHH-HH----hhhcccCCEEEEECCC
Confidence 964211 11 1100 22 3468999988766654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0047 Score=60.61 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 395 MAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 395 ~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
+.|.+.....++..||+||.| |.|.-..++.| ++|+|+|- .+...+.+++....+... +++++++++.-+..
T Consensus 11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~--D~~l~~~L~~~~~~~~~~-~~~~~i~~D~l~~~-- 83 (278)
T d1zq9a1 11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACEL--DPRLVAELHKRVQGTPVA-SKLQVLVGDVLKTD-- 83 (278)
T ss_dssp HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEES--CHHHHHHHHHHHTTSTTG-GGEEEEESCTTTSC--
T ss_pred HHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEE--ccchhHHHHHHHhhhccc-cchhhhHHHHhhhh--
Confidence 345555555567899999999 99998888884 69999999 565556677777776665 79999999765443
Q ss_pred ccCCccccEEEcc-ccccC
Q 044245 474 DTQQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 474 ~l~~~~vDvivsE-~~~~~ 491 (694)
+ .+.+.|||- ||+..
T Consensus 84 -~--~~~~~vV~NLPY~Is 99 (278)
T d1zq9a1 84 -L--PFFDTCVANLPYQIS 99 (278)
T ss_dssp -C--CCCSEEEEECCGGGH
T ss_pred -h--hhhhhhhcchHHHHH
Confidence 2 235678888 77653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0023 Score=62.98 Aligned_cols=104 Identities=4% Similarity=0.004 Sum_probs=54.5
Q ss_pred cEEEecCC-chHHHHHH-----HcCCC-ceEEEcCCCcChhHHHHHHHHhc-cCCcccccEEEeeccccccccc---ccC
Q 044245 408 LCVVADDS-VFLTICVA-----RLSKT-AHVLSLLPGLGDKGAQYLRTVAD-PNCFSIDRVEILQKGKKCLTMD---DTQ 476 (694)
Q Consensus 408 ~vldig~G-giLsl~aA-----~~g~a-~~V~ave~~~~~~~~~~~~~i~~-~N~l~~~~i~vi~~~~~~~~~~---~l~ 476 (694)
.||||||| |.++...+ +.+++ .+|+++|+ ++.+.+.+++-++ ..++..-++.+.....+++... ..+
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~--s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEP--SAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECC--CHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeC--cHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 69999999 86544332 22222 25789999 6555455555443 3444311334445544433221 234
Q ss_pred CccccEEEccccccCCccccCcchhhHHHHHhhcccccCCCceEE
Q 044245 477 QKKVDLLIGEPYYFGNDGMLPWQNLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 477 ~~~vDvivsE~~~~~~e~~l~w~~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
.++.|+|++=-.+. .+-+ +. -.-..+.++|+|||.++
T Consensus 121 ~~~fD~I~~~~~l~---~~~d---~~--~~l~~l~~~LkpgG~l~ 157 (280)
T d1jqea_ 121 LQKWDFIHMIQMLY---YVKD---IP--ATLKFFHSLLGTNAKML 157 (280)
T ss_dssp CCCEEEEEEESCGG---GCSC---HH--HHHHHHHHTEEEEEEEE
T ss_pred CCceeEEEEcccee---cCCC---HH--HHHHHHHhhCCCCCEEE
Confidence 67899999953111 1111 11 11122334799999664
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.01 Score=59.56 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=57.6
Q ss_pred hhCCHHHHHHHHHHHH--hhc--cCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 46 MLNDSYRNRAYRLAID--KMV--TKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~--~~~--~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
.+.|..-.+...+++. +.. .++..|||||.|.|.++..+.+++. ..+|+++|.++.+++..++...
T Consensus 19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~----------~~~v~~iE~D~~~~~~L~~~~~ 88 (322)
T d1i4wa_ 19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC----------PRQYSLLEKRSSLYKFLNAKFE 88 (322)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC----------CSEEEEECCCHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC----------CCEEEEEECCHHHHHHHHHhcc
Confidence 4566654444444332 111 1467899999999999999998864 2589999999999998876542
Q ss_pred HcCCCCcEEEEecccccc
Q 044245 122 VNGMGRNIKVINKRSDEL 139 (694)
Q Consensus 122 ~ngl~~~I~vi~~~~~~l 139 (694)
.++++++++|...+
T Consensus 89 ----~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 89 ----GSPLQILKRDPYDW 102 (322)
T ss_dssp ----TSSCEEECSCTTCH
T ss_pred ----CCCcEEEeCchhhc
Confidence 24799999998654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.98 E-value=0.01 Score=58.25 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=72.2
Q ss_pred HHHHHHHHHh--cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC--------cccccE
Q 044245 392 SMVMAMRNAL--QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC--------FSIDRV 460 (694)
Q Consensus 392 ~y~~Ai~~~~--~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~--------l~~~~i 460 (694)
.|..++.... .....+.||.||.| |..+..+.+.+ .++|..||- .+...+++++....++ ....|+
T Consensus 57 ~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEi--D~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv 133 (276)
T d1mjfa_ 57 SYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEI--DEDVIMVSKDLIKIDNGLLEAMLNGKHEKA 133 (276)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEES--CHHHHHHHHHHTCTTTTHHHHHHTTCCSSE
T ss_pred HHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhC-CceEEEecC--CHHHHHHHHHhhhhccchhhhhhccCCCCc
Confidence 3555554321 11235789999999 87777777876 689999998 6666677777664432 112689
Q ss_pred EEeecccccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 461 EILQKGKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 461 ~vi~~~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
+++.++....-.. .++.|+||...+.-. +. + ..| .|+-.- ++.|+|||+++
T Consensus 134 ~i~~~Da~~~l~~---~~~yDvIi~D~~~~~--~~-~-~~L~t~eF~~~~---~~~L~~~Gv~v 187 (276)
T d1mjfa_ 134 KLTIGDGFEFIKN---NRGFDVIIADSTDPV--GP-A-KVLFSEEFYRYV---YDALNNPGIYV 187 (276)
T ss_dssp EEEESCHHHHHHH---CCCEEEEEEECCCCC---------TTSHHHHHHH---HHHEEEEEEEE
T ss_pred eEEEChHHHHHhc---cCCCCEEEEeCCCCC--CC-c-ccccCHHHHHhh---HhhcCCCceEE
Confidence 9998876544221 478999999875431 22 2 222 333222 23599999875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0077 Score=54.40 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=62.7
Q ss_pred HHHh-hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 59 AIDK-MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 59 ai~~-~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++++ .+.++..||-+|+|+ |.++..++++.. ..+|+++|.++.-++.|++ .|.. .+.. .+.
T Consensus 18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G----------~~~Vi~~d~~~~rl~~a~~----~Ga~-~~~~--~~~ 80 (171)
T d1pl8a2 18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG----------AAQVVVTDLSATRLSKAKE----IGAD-LVLQ--ISK 80 (171)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT----------CSEEEEEESCHHHHHHHHH----TTCS-EEEE--CSS
T ss_pred HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcC----------CceEEeccCCHHHHHHHHH----hCCc-cccc--ccc
Confidence 3444 367899999999985 677777777754 3589999999998888765 3553 2221 121
Q ss_pred cccc-----cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELE-----VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~-----~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+.. ........+|+++- ..+ ....+..+. ++++++|+++--
T Consensus 81 ~~~~~~~~~~~~~~g~g~Dvvid-~~G-------~~~~~~~a~-~~~~~gG~iv~~ 127 (171)
T d1pl8a2 81 ESPQEIARKVEGQLGCKPEVTIE-CTG-------AEASIQAGI-YATRSGGTLVLV 127 (171)
T ss_dssp CCHHHHHHHHHHHHTSCCSEEEE-CSC-------CHHHHHHHH-HHSCTTCEEEEC
T ss_pred cccccccccccccCCCCceEEEe-ccC-------CchhHHHHH-HHhcCCCEEEEE
Confidence 1110 00012346899874 233 123333344 489999988643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.82 E-value=0.011 Score=53.88 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=47.9
Q ss_pred ChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHH
Q 044245 377 PPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRT 448 (694)
Q Consensus 377 ~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~ 448 (694)
|.+...+|.+..-| +|+..+++.. ..+|..|+.+|+| |+++...|++-|+++|++++. ++.-.+++++
T Consensus 3 P~e~aa~l~Ca~~T-~~~Av~~~~~-~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~ 72 (176)
T d1d1ta2 3 PPEKVCLIGCGFST-GYGAAVKTGK-VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMA 72 (176)
T ss_dssp CHHHHGGGGTHHHH-HHHHHHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHH
T ss_pred CHHHHHhhhhHHHH-HHHHHHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHh
Confidence 44556777777766 4666555432 3578899999999 788888888756999999999 4443344443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.01 Score=63.68 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccC--------CCccEEEEEcCCHHHHHHHHHHHHHcCCCCcE----EEEe
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSL--------NTKGMVTACESYLPMVKLMKKVLHVNGMGRNI----KVIN 133 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~--------~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I----~vi~ 133 (694)
++.+|+|-.||+|.+.+.+.+........... .....++|+|.++.+...|+.++-.++....+ .+..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 46799999999999988887764311000000 00136899999999999999988877764321 1222
Q ss_pred ccccccccccCCCCCccEEEEccccccccCCC------------hHHHHHHHHHhccCCCCeE
Q 044245 134 KRSDELEVGVDIDSRADILVSEILDSELLGEG------------LIPTLQHAHDRLLVENPLT 184 (694)
Q Consensus 134 ~~~~~l~~~~~l~~~~DlIvse~~~~~l~~e~------------~l~~l~~~~~~~L~p~G~i 184 (694)
++...-.. ....+||+|++||....-.... ....+.+++ ++|++||++
T Consensus 244 ~~~l~~d~--~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l-~~Lk~gGr~ 303 (524)
T d2ar0a1 244 GNTLGSDG--ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHII-ETLHPGGRA 303 (524)
T ss_dssp SCTTSHHH--HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHH-HHEEEEEEE
T ss_pred hhhhhhcc--cccccceeEEecCCccccccccchhhhccccccccHHHHHHHH-HhccccCcE
Confidence 22221110 1125799999999664222111 122344444 589999853
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.75 E-value=0.0039 Score=61.77 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=70.8
Q ss_pred HHHHHHHHHh---cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeec
Q 044245 392 SMVMAMRNAL---QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQK 465 (694)
Q Consensus 392 ~y~~Ai~~~~---~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~ 465 (694)
.|+.++.... +. ..+.||.||.| |.++-.+.+..+.++|..||- .+...+++++.... +.++..|++|+.+
T Consensus 74 ~YhE~l~h~pl~~~~-~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEI--Dp~Vi~~a~~~~~~~~~~~~d~rv~v~~~ 150 (295)
T d1inla_ 74 MYHEMLAHVPMFLHP-NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEV--DGLVIEAARKYLKQTSCGFDDPRAEIVIA 150 (295)
T ss_dssp HHHHHHHHHHHHHSS-SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEES
T ss_pred hhhhhhcchhHhhCC-CCceEEEecCCchHHHHHHHhcCCCceEEEecC--CHHHHHHHHHHHHhhcccccCCCcEEEhh
Confidence 4666655432 22 34789999999 777777777644789999988 56555666665543 2344369999887
Q ss_pred ccccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..+.-.. ..++.|+||...+.-. .+ -+ ..| .|+-.- .+.|+|||+++
T Consensus 151 Da~~~l~~--~~~~yDvIi~D~~dp~-~~-~~-~~L~t~efy~~~---~~~L~~~Gi~v 201 (295)
T d1inla_ 151 NGAEYVRK--FKNEFDVIIIDSTDPT-AG-QG-GHLFTEEFYQAC---YDALKEDGVFS 201 (295)
T ss_dssp CHHHHGGG--CSSCEEEEEEEC-------------CCSHHHHHHH---HHHEEEEEEEE
T ss_pred hHHHHHhc--CCCCCCEEEEcCCCCC-cC-ch-hhhccHHHHHHH---HhhcCCCcEEE
Confidence 66543221 2578999999865421 01 11 112 232222 23589999764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=95.75 E-value=0.0026 Score=61.36 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 396 AMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 396 Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
.|.+.....++..||+||+| |.|+-..++. +++|+|+|-+ +...+.++ +..+.. +++++++++..+++.
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D--~~l~~~l~---~~~~~~-~n~~ii~~D~l~~~~-- 89 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELD--SHLFNLSS---EKLKLN-TRVTLIHQDILQFQF-- 89 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSS--CSSSSSSS---CTTTTC-SEEEECCSCCTTTTC--
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeec--ccchhhhh---hhhhhc-cchhhhhhhhhcccc--
Confidence 35555554567899999999 9998888887 4799999994 32212211 111222 689999998776654
Q ss_pred cCCccccEEEcc-ccccC
Q 044245 475 TQQKKVDLLIGE-PYYFG 491 (694)
Q Consensus 475 l~~~~vDvivsE-~~~~~ 491 (694)
+....+.|||. ||+..
T Consensus 90 -~~~~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 90 -PNKQRYKIVGNIPYHLS 106 (245)
T ss_dssp -CCSSEEEEEEECCSSSC
T ss_pred -ccceeeeEeeeeehhhh
Confidence 34556789998 77664
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.72 E-value=0.012 Score=55.91 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=57.7
Q ss_pred hccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 63 MVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 63 ~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
.+.++..|+|+|||.|..+..++.... ..+|.|.++--...+. -.....++. +-+++..++. +.
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~----------v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~d--v~-- 126 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKN----------VREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVD--VF-- 126 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTT----------EEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCC--TT--
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcC----------CCceeEEEecCccccC-Ccccccccc-ccccchhhhh--HH--
Confidence 356778999999999999999987743 2467777762110000 000011111 1233332221 11
Q ss_pred cCCCCCccEEEEccccccccCCChHH-----HHHHHHHhccCCCCeEE
Q 044245 143 VDIDSRADILVSEILDSELLGEGLIP-----TLQHAHDRLLVENPLTV 185 (694)
Q Consensus 143 ~~l~~~~DlIvse~~~~~l~~e~~l~-----~l~~~~~~~L~p~G~ii 185 (694)
...++++|+|+|++-.+. +....+ .+++...++|+|||-++
T Consensus 127 ~l~~~~~D~vlcDm~ess--~~~~vd~~Rtl~vLela~~wLk~gg~Fv 172 (257)
T d2p41a1 127 FIPPERCDTLLCDIGESS--PNPTVEAGRTLRVLNLVENWLSNNTQFC 172 (257)
T ss_dssp TSCCCCCSEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred hcCCCcCCEEEeeCCCCC--CCchhhhhhHHHHHHHHHHHcccCCEEE
Confidence 123478999999863321 111111 34556678999999654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.68 E-value=0.015 Score=53.61 Aligned_cols=80 Identities=11% Similarity=0.095 Sum_probs=56.8
Q ss_pred hcCCCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc--ccC
Q 044245 401 LQGRVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD--DTQ 476 (694)
Q Consensus 401 ~~~~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~--~l~ 476 (694)
+...++.+++|+++| | .--.++.+.. -.+||+++. .+.+.+.+++..+. +. ++++++++...++... .+.
T Consensus 19 l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~--d~~~l~~a~~~l~~--~~-~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 19 LKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDV--DSEVLRIAEEKLKE--FS-DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEES--CHHHHHHHHHHTGG--GT-TTEEEEECCGGGHHHHHHHTT
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeec--hHHHHHHHHHhhcc--cc-ccccchhHHHhhHHHHHHHcC
Confidence 334577899999988 4 5555555554 468999999 67777777776655 34 7899999987766422 334
Q ss_pred CccccEEEcc
Q 044245 477 QKKVDLLIGE 486 (694)
Q Consensus 477 ~~~vDvivsE 486 (694)
.+++|-|+-.
T Consensus 93 ~~~vdgIl~D 102 (192)
T d1m6ya2 93 IEKVDGILMD 102 (192)
T ss_dssp CSCEEEEEEE
T ss_pred CCCcceeeec
Confidence 5789998865
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.67 E-value=0.0061 Score=55.47 Aligned_cols=106 Identities=20% Similarity=0.168 Sum_probs=66.8
Q ss_pred HHHHHHHHh-hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 54 RAYRLAIDK-MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 54 ~~y~~ai~~-~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
..|..+++. .+.+|.+||-+|||. |++++.++++.. ..+|+++|.++.-++.|++ .|..+ +
T Consensus 15 T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G----------a~~Vi~~d~~~~r~~~a~~----~Ga~~---~ 77 (174)
T d1e3ia2 15 SGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG----------ASRIIAIDINGEKFPKAKA----LGATD---C 77 (174)
T ss_dssp HHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT----------CSEEEEECSCGGGHHHHHH----TTCSE---E
T ss_pred HHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhC----------CceeeeeccchHHHHHHHH----hCCCc---c
Confidence 345555554 378899999999996 899999998865 3689999999988777765 45432 2
Q ss_pred Eeccccc-cc---cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCC-CeEE
Q 044245 132 INKRSDE-LE---VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVEN-PLTV 185 (694)
Q Consensus 132 i~~~~~~-l~---~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~-G~ii 185 (694)
+.....+ .. ......+.+|+++- ..+ ....+..+.+ .++++ |+++
T Consensus 78 i~~~~~~~~~~~~~~~~~~~G~d~vie-~~G-------~~~~~~~a~~-~~~~g~G~~v 127 (174)
T d1e3ia2 78 LNPRELDKPVQDVITELTAGGVDYSLD-CAG-------TAQTLKAAVD-CTVLGWGSCT 127 (174)
T ss_dssp ECGGGCSSCHHHHHHHHHTSCBSEEEE-SSC-------CHHHHHHHHH-TBCTTTCEEE
T ss_pred cCCccchhhhhhhHhhhhcCCCcEEEE-ecc-------cchHHHHHHH-HhhcCCeEEE
Confidence 3222111 10 00001256899873 333 2445555554 77885 8876
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.64 E-value=0.048 Score=48.66 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=61.3
Q ss_pred hccCCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecc-ccccc
Q 044245 63 MVTKSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKR-SDELE 140 (694)
Q Consensus 63 ~~~~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~-~~~l~ 140 (694)
.+.++.+||-+||| .|+++..++++.+ .+|+++|.++.-++.|++. |.. ..+.... ..+..
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G-----------a~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~ 85 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG-----------AFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEES 85 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHH
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhc-----------ccccccchHHHHHHHHHHc----CCc--EEEeccccccccc
Confidence 37789999999998 4777887887765 5899999999988888753 432 2222222 11110
Q ss_pred -----cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 141 -----VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 141 -----~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
........+|+++- ..+ ....+..++ ++++++|+++-
T Consensus 86 ~~~~~~~~~~g~g~D~vid-~~g-------~~~~~~~a~-~~~~~~G~iv~ 127 (170)
T d1e3ja2 86 SIIERIRSAIGDLPNVTID-CSG-------NEKCITIGI-NITRTGGTLML 127 (170)
T ss_dssp HHHHHHHHHSSSCCSEEEE-CSC-------CHHHHHHHH-HHSCTTCEEEE
T ss_pred hhhhhhhcccccCCceeee-cCC-------ChHHHHHHH-HHHhcCCceEE
Confidence 00011346898873 222 133344454 48999999873
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.42 E-value=0.021 Score=56.53 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=72.1
Q ss_pred HHHHHHHHHh---cCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC--CcccccEEEeec
Q 044245 392 SMVMAMRNAL---QGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN--CFSIDRVEILQK 465 (694)
Q Consensus 392 ~y~~Ai~~~~---~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N--~l~~~~i~vi~~ 465 (694)
.|+.++.... +. ..+.||.||.| |.++-.+.+....++|..||- .+...+++++....| +++..|++++.+
T Consensus 91 ~YhE~l~h~pl~~~~-~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEI--D~~Vv~~a~~~~~~~~~~~~dprv~i~i~ 167 (312)
T d2b2ca1 91 SYQEMLAHLPMFAHP-DPKRVLIIGGGDGGILREVLKHESVEKVTMCEI--DEMVIDVAKKFLPGMSCGFSHPKLDLFCG 167 (312)
T ss_dssp HHHHHHHHHHHHHSS-SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECS--CHHHHHHHHHHCTTTSGGGGCTTEEEECS
T ss_pred HHHHHhhhHHHhcCC-CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcc--cHHHHHHHHhhchhhccccCCCCeEEEEc
Confidence 3666655432 22 34689999999 877777778644689999999 666667777766543 244468999877
Q ss_pred ccccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 466 GKKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 466 ~~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
+..+.-.. ..++.|+||...+.-. +. + ..| .|+-. .++.|+|||+++
T Consensus 168 Da~~~l~~--~~~~yDvII~D~~dp~--~~-~-~~L~t~eFy~~---~~~~L~~~Gi~v 217 (312)
T d2b2ca1 168 DGFEFLKN--HKNEFDVIITDSSDPV--GP-A-ESLFGQSYYEL---LRDALKEDGILS 217 (312)
T ss_dssp CHHHHHHH--CTTCEEEEEECCC-----------------HHHH---HHHHEEEEEEEE
T ss_pred hHHHHHHh--CCCCCCEEEEcCCCCC--Cc-c-hhhhhHHHHHH---HHhhcCCCcEEE
Confidence 65433221 2578999999865431 21 2 223 22111 234699999865
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.38 E-value=0.01 Score=58.48 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecc
Q 044245 392 SMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~ 466 (694)
.|+..+....-. ...+.||.||.| |.++-.+.+..+.++|..||- .+...+++++.... +.++..|++++.++
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEi--D~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D 142 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEI--DKMVVDVSKQFFPDVAIGYEDPRVNLVIGD 142 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecC--CHHHHHHHHHhchhhhccccCCCcEEEEcc
Confidence 366665554321 134689999999 888888888744789999988 56555666665432 22444789998776
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
.-+.-. ....++.|+||...+.-. +. + ..| .|+-. +++.|+|||+++
T Consensus 143 a~~~l~-~~~~~~yDvIi~D~~dp~--~~-~-~~L~t~eF~~~---~~~~L~~~Gi~v 192 (290)
T d1xj5a_ 143 GVAFLK-NAAEGSYDAVIVDSSDPI--GP-A-KELFEKPFFQS---VARALRPGGVVC 192 (290)
T ss_dssp HHHHHH-TSCTTCEEEEEECCCCTT--SG-G-GGGGSHHHHHH---HHHHEEEEEEEE
T ss_pred HHHHHh-hccccCccEEEEcCCCCC--Cc-c-hhhCCHHHHHH---HHHhcCCCcEEE
Confidence 443321 122358999999865431 22 2 233 23222 234699999876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.30 E-value=0.0043 Score=56.55 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=61.9
Q ss_pred HHHh-hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 59 AIDK-MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 59 ai~~-~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
+++. .+.+|.+||-+|||. |++++.+++... ..+|+++|.++.-++.|++ .|.. .++..+.
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G----------a~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~ 81 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRG----------AGRIIGVGSRPICVEAAKF----YGAT---DILNYKN 81 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT----------CSCEEEECCCHHHHHHHHH----HTCS---EEECGGG
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhccc----------ccccccccchhhhHHHHHh----hCcc---ccccccc
Confidence 3444 478899999999985 788888888754 3579999999988888764 3543 2232222
Q ss_pred cccccc-cC--CCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVG-VD--IDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~-~~--l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.++... .+ -...+|+++- ..+ .. ..+..++ ++++|+|+++.
T Consensus 82 ~~~~~~v~~~t~g~G~D~vid-~~g----~~---~~~~~a~-~~~~~~G~iv~ 125 (174)
T d1jqba2 82 GHIEDQVMKLTNGKGVDRVIM-AGG----GS---ETLSQAV-KMVKPGGIISN 125 (174)
T ss_dssp SCHHHHHHHHTTTSCEEEEEE-CSS----CT---THHHHHH-HHEEEEEEEEE
T ss_pred hhHHHHHHHHhhccCcceEEE-ccC----CH---HHHHHHH-HHHhcCCEEEE
Confidence 221100 00 0134998874 233 12 2233334 47899998864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.27 E-value=0.021 Score=51.61 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=66.5
Q ss_pred HHHHHHHHHhh-ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 53 NRAYRLAIDKM-VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 53 ~~~y~~ai~~~-~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
..+|..+++.. +.++.+||-+|||. |.++..++++.. ..+|+++|.++.-++.|++ .|.. .
T Consensus 14 ~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g----------~~~v~~~~~~~~k~~~a~~----~Ga~---~ 76 (174)
T d1f8fa2 14 QTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCG----------ASIIIAVDIVESRLELAKQ----LGAT---H 76 (174)
T ss_dssp HHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT----------CSEEEEEESCHHHHHHHHH----HTCS---E
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccc----------cceeeeeccHHHHHHHHHH----cCCe---E
Confidence 34566666553 78899999999984 566777776653 3588999999988888775 3543 2
Q ss_pred EEeccccccccc--cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 131 VINKRSDELEVG--VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 131 vi~~~~~~l~~~--~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
++..+..++... ...++.+|+++- ..+ ....+..+. ++++|+|+++-
T Consensus 77 ~i~~~~~~~~~~i~~~t~gg~D~vid-~~G-------~~~~~~~~~-~~~~~~G~i~~ 125 (174)
T d1f8fa2 77 VINSKTQDPVAAIKEITDGGVNFALE-STG-------SPEILKQGV-DALGILGKIAV 125 (174)
T ss_dssp EEETTTSCHHHHHHHHTTSCEEEEEE-CSC-------CHHHHHHHH-HTEEEEEEEEE
T ss_pred EEeCCCcCHHHHHHHHcCCCCcEEEE-cCC-------cHHHHHHHH-hcccCceEEEE
Confidence 343333322100 011257999873 222 133344444 48999998863
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.19 E-value=0.017 Score=52.23 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=67.0
Q ss_pred HHHHHHHHHh-hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 53 NRAYRLAIDK-MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 53 ~~~y~~ai~~-~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
..+|..++++ .+++|.+||-+|||. |++++.++++.. ..+|+++|.++.-++.|++ .|...
T Consensus 13 ~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G----------~~~Vi~~d~~~~kl~~a~~----lGa~~--- 75 (174)
T d1p0fa2 13 ATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG----------ASRIIGVGTHKDKFPKAIE----LGATE--- 75 (174)
T ss_dssp HHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT----------CSEEEEECSCGGGHHHHHH----TTCSE---
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC----------CceeeccCChHHHHHHHHH----cCCcE---
Confidence 3456666665 388899999999985 677777777654 3689999999998888875 45432
Q ss_pred EEecccccc--c--cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 131 VINKRSDEL--E--VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 131 vi~~~~~~l--~--~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+++.+..+. . ......+.+|+++-. .+ ..+.+......+++++|+++
T Consensus 76 ~i~~~~~d~~~~~~~~~~~~~G~d~vid~-~g-------~~~~~~~~~~~~~~~~G~~v 126 (174)
T d1p0fa2 76 CLNPKDYDKPIYEVICEKTNGGVDYAVEC-AG-------RIETMMNALQSTYCGSGVTV 126 (174)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEEC-SC-------CHHHHHHHHHTBCTTTCEEE
T ss_pred EEcCCCchhHHHHHHHHhcCCCCcEEEEc-CC-------CchHHHHHHHHHHHhcCceE
Confidence 232221110 0 000112468988742 22 25566666665556678765
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.014 Score=56.29 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccc
Q 044245 394 VMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTM 472 (694)
Q Consensus 394 ~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~ 472 (694)
-+.|.+.....++..||+||.| |.|....++. +++|+|+|- .+...+++++ ..... +++++++++.-++..
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEi--D~~l~~~L~~---~~~~~-~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIEL--DRDLAARLQT---HPFLG-PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECC--CHHHHHHHHT---CTTTG-GGEEEECSCGGGCCH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEe--ccchhHHHHH---Hhhhc-cchhHHhhhhhhhcc
Confidence 3456666665678899999999 9999888887 479999999 4543334332 22222 789999998776654
Q ss_pred cccC--CccccEEEcc-ccccC
Q 044245 473 DDTQ--QKKVDLLIGE-PYYFG 491 (694)
Q Consensus 473 ~~l~--~~~vDvivsE-~~~~~ 491 (694)
.++. ..+.-.|||- ||+-+
T Consensus 82 ~~~~~~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 82 GELAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HHHHHHHTSCEEEEEECCTTTH
T ss_pred cccccccCCCeEEEecchHHHH
Confidence 4331 1122366776 77654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.17 E-value=0.01 Score=57.04 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc---C-C----cc
Q 044245 386 DGEWRLSMVMAMRNALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP---N-C----FS 456 (694)
Q Consensus 386 D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~---N-~----l~ 456 (694)
...+.+...+|+.-.. -....|||.-+| |--|+.+|..| .+|+++|. ++....++++.++. | . +.
T Consensus 71 ~~~~~~~l~kA~gl~~--~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr--~p~l~~ll~d~l~r~~~~~~~~~~~~ 144 (250)
T d2oyra1 71 GGGRGEAVAKAVGIKG--DYLPDVVDATAGLGRDAFVLASVG--CRVRMLER--NPVVAALLDDGLARGYADAEIGGWLQ 144 (250)
T ss_dssp SCGGGSHHHHHTTCBT--TBCCCEEETTCTTCHHHHHHHHHT--CCEEEEEC--CHHHHHHHHHHHHHHHHCTTTHHHHH
T ss_pred cCcchhHHHHHhcCCC--CCCCEEEECCCcccHHHHHHHhCC--CEEEEEcc--CHHHHHHHHHHHHHHHhCchhHHHHh
Confidence 3445555555553111 112379999999 99999999996 47999999 78766666554432 1 1 22
Q ss_pred cccEEEeecccccccccccCCccccEEEcccccc
Q 044245 457 IDRVEILQKGKKCLTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 457 ~~~i~vi~~~~~~~~~~~l~~~~vDvivsE~~~~ 490 (694)
++|+++++++.+.-. .+ .+.+|+|.-.|+|-
T Consensus 145 -~ri~li~~Ds~~~L~-~~-~~~~DvIYlDPMFp 175 (250)
T d2oyra1 145 -ERLQLIHASSLTALT-DI-TPRPQVVYLDPMFP 175 (250)
T ss_dssp -HHEEEEESCHHHHST-TC-SSCCSEEEECCCCC
T ss_pred -hhheeecCcHHHHHh-cc-CCCCCEEEECCCCc
Confidence 599999998755432 22 35689999999775
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.06 E-value=0.013 Score=59.90 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=59.1
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc--------------cEEEeeccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID--------------RVEILQKGKKC 469 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~--------------~i~vi~~~~~~ 469 (694)
+++.|||..+| |+.|+-+|+.+|+++|++++- ++.|.++++++++.|+.+ + ++++.+.+...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDi--s~~A~~~i~~N~~lN~~~-~~~~~~~~~~~~~~~~~~~~~~Da~~ 121 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDI--SEDAYELMKRNVMLNFDG-ELRESKGRAILKGEKTIVINHDDANR 121 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEES--CHHHHHHHHHHHHHHCCS-CCEECSSEEEEESSSEEEEEESCHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecC--CHHHHHHHHHHHHhcCcc-ccccccccccccccceeEeehhhhhh
Confidence 56789999999 999997666445899999999 888999999999999875 2 23333332211
Q ss_pred ccccccCCccccEEEcccccc
Q 044245 470 LTMDDTQQKKVDLLIGEPYYF 490 (694)
Q Consensus 470 ~~~~~l~~~~vDvivsE~~~~ 490 (694)
+-. ...++.|+|.-+||-+
T Consensus 122 ~~~--~~~~~fDvIDiDPfGs 140 (375)
T d2dula1 122 LMA--ERHRYFHFIDLDPFGS 140 (375)
T ss_dssp HHH--HSTTCEEEEEECCSSC
T ss_pred hhH--hhcCcCCcccCCCCCC
Confidence 111 1246799999999643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.04 E-value=0.025 Score=51.12 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=45.4
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 382 AIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
++|....-| +|+.+++.. ...+|..|+++|+| |++++..||+-|+++|++++. ++.-.++ ++..|..
T Consensus 6 a~lgCa~~T-a~~a~~~~a-~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~----a~~lGa~ 74 (174)
T d1p0fa2 6 CLIGCGFAT-GYGAAVNTA-KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPK----AIELGAT 74 (174)
T ss_dssp GGGGTHHHH-HHHHHHTTT-CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHH----HHHTTCS
T ss_pred HhhhhHHHH-HHHHHHHhh-CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHH----HHHcCCc
Confidence 445554434 577666543 34578899999999 888888888655999999998 4432233 4556654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.025 Score=55.50 Aligned_cols=119 Identities=10% Similarity=0.057 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcC--CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccC--CcccccEEEeecc
Q 044245 392 SMVMAMRNALQG--RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPN--CFSIDRVEILQKG 466 (694)
Q Consensus 392 ~y~~Ai~~~~~~--~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N--~l~~~~i~vi~~~ 466 (694)
.|..++....-. ...+.||.||.| |.++-.+.+.-+..+|..||- .+...+++++....| .+...|++++.++
T Consensus 63 ~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEi--D~~Vv~~a~~~~~~~~~~~~d~rv~i~~~D 140 (285)
T d2o07a1 63 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEI--DEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140 (285)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEES--CHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred HHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccC--CHHHHHHHHhhchhhccccCCCCceEEEcc
Confidence 466666544311 134789999999 877777778644789998877 555555666654322 2433699999886
Q ss_pred cccccccccCCccccEEEccccccCCccccCcchh---hHHHHHhhcccccCCCceEE
Q 044245 467 KKCLTMDDTQQKKVDLLIGEPYYFGNDGMLPWQNL---RFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 467 ~~~~~~~~l~~~~vDvivsE~~~~~~e~~l~w~~l---~f~~~r~~~~~~L~p~g~i~ 521 (694)
..+.-.. ..++.|+||...+.-. +. + ..| .|+-. .++.|+|||+++
T Consensus 141 a~~~l~~--~~~~yDvIi~D~~~p~--~~-~-~~L~t~eF~~~---~~~~L~~~Gi~v 189 (285)
T d2o07a1 141 GFEFMKQ--NQDAFDVIITDSSDPM--GP-A-ESLFKESYYQL---MKTALKEDGVLC 189 (285)
T ss_dssp HHHHHHT--CSSCEEEEEEECC---------------CHHHHH---HHHHEEEEEEEE
T ss_pred HHHHHhc--CCCCCCEEEEcCCCCC--Cc-c-cccccHHHHHH---HHHhcCCCCeEE
Confidence 5433221 2578999999865321 21 2 223 23222 133599999875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.02 E-value=0.018 Score=52.17 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=47.5
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
.++|.+-.-| +|..++.... ..+|..|+++|+| |++++.+||+-||++|++++. ++.-.++ +++.|..
T Consensus 6 aa~l~Ca~~T-~~~a~~~~a~-v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~----a~~~Ga~ 75 (174)
T d1e3ia2 6 VCLIGCGFSS-GYGAAINTAK-VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPK----AKALGAT 75 (174)
T ss_dssp HGGGGTHHHH-HHHHHHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHH----HHHTTCS
T ss_pred HHHhhhHHHH-HHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHH----HHHhCCC
Confidence 4455554434 5777765443 3477899999999 899999999867999999999 4433333 4455653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.91 E-value=0.019 Score=52.02 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=69.9
Q ss_pred HhhCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHH
Q 044245 45 DMLNDSYRNRAYRLAIDKM-VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHV 122 (694)
Q Consensus 45 ~ml~D~~r~~~y~~ai~~~-~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ 122 (694)
.++.+.. ...|...+++. +++|..|+-+|+|. |++++.++++.. ..+|+++|.+++-++.|++.
T Consensus 8 a~l~Ca~-~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G----------~~~Vi~vd~~~~kl~~Ak~~--- 73 (176)
T d1d1ta2 8 CLIGCGF-STGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAG----------ASRIIGIDLNKDKFEKAMAV--- 73 (176)
T ss_dssp GGGGTHH-HHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT----------CSEEEEECSCGGGHHHHHHH---
T ss_pred HhhhhHH-HHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC----------CceEEEecCcHHHHHHHHhc---
Confidence 3444444 33455555554 78899999999984 677777777654 36999999999999988864
Q ss_pred cCCCCcEEEEecc-cccc-c-ccc-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 123 NGMGRNIKVINKR-SDEL-E-VGV-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 123 ngl~~~I~vi~~~-~~~l-~-~~~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
|-.. +++.. .... . ... .....+|+++-. . +....+..+...+++.+|+++
T Consensus 74 -GA~~---~in~~~~~~~~~~~~~~~~g~G~d~vi~~-~-------g~~~~~~~a~~~~~~~~G~~v 128 (176)
T d1d1ta2 74 -GATE---CISPKDSTKPISEVLSEMTGNNVGYTFEV-I-------GHLETMIDALASCHMNYGTSV 128 (176)
T ss_dssp -TCSE---EECGGGCSSCHHHHHHHHHTSCCCEEEEC-S-------CCHHHHHHHHTTSCTTTCEEE
T ss_pred -CCcE---EECccccchHHHHHHHHhccccceEEEEe-C-------CchHHHHHHHHHhhcCCeEEE
Confidence 4432 22211 1110 0 000 012468987742 1 235566667776667768775
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=94.74 E-value=0.042 Score=53.49 Aligned_cols=106 Identities=9% Similarity=0.046 Sum_probs=66.4
Q ss_pred CCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhcc--CCcccccEEEeecccccccccccCCccccE
Q 044245 406 QPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADP--NCFSIDRVEILQKGKKCLTMDDTQQKKVDL 482 (694)
Q Consensus 406 ~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~--N~l~~~~i~vi~~~~~~~~~~~l~~~~vDv 482 (694)
.+.||.||.| |.++-.+.+..+.++|..||- .+...+++++.... +.++..|++++.++....-.. ..++.|+
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEI--D~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~--~~~~yDv 151 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDI--DGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--SENQYDV 151 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEES--CHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--CCSCEEE
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecC--CHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh--cCCCCCE
Confidence 4789999999 888777777644789998888 55555566665432 223335899988765433221 2578999
Q ss_pred EEccccccCCccccCcc--hhhHHHHHhhcccccCCCceEE
Q 044245 483 LIGEPYYFGNDGMLPWQ--NLRFWKERSKLDPVLSKEVIIM 521 (694)
Q Consensus 483 ivsE~~~~~~e~~l~w~--~l~f~~~r~~~~~~L~p~g~i~ 521 (694)
||...+.-. +. ++. ...|+-.- ++.|+|+|+++
T Consensus 152 Ii~D~~~p~--~~-~~~L~t~eFy~~~---~~~L~~~Gv~v 186 (274)
T d1iy9a_ 152 IMVDSTEPV--GP-AVNLFTKGFYAGI---AKALKEDGIFV 186 (274)
T ss_dssp EEESCSSCC--SC-CCCCSTTHHHHHH---HHHEEEEEEEE
T ss_pred EEEcCCCCC--Cc-chhhccHHHHHHH---HhhcCCCceEE
Confidence 999865432 21 212 12332221 23589999765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.74 E-value=0.048 Score=49.15 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=45.0
Q ss_pred ChhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChh
Q 044245 377 PPERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDK 441 (694)
Q Consensus 377 ~r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~ 441 (694)
|-+...||.+.-=| +|+ |++. ....+|..|+++|+| |+++..+||+-||++|++++. ++.
T Consensus 2 p~e~A~~l~~~~~t-a~~-a~~~-a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~ 63 (174)
T d1jqba2 2 PLENAVMITDMMTT-GFH-GAEL-ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS--RPI 63 (174)
T ss_dssp CHHHHHTTTTHHHH-HHH-HHHH-TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC--CHH
T ss_pred CHHHHHHhhhHHHH-HHH-HHHH-hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccc--hhh
Confidence 44566677776644 565 5555 345678899999999 899999999866999999998 553
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.68 E-value=0.028 Score=53.59 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHH
Q 044245 55 AYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLH 121 (694)
Q Consensus 55 ~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~ 121 (694)
...+.|+..-.+|..|||--||||..+.+|.+.|. +.+|+|++++-++.|+++++
T Consensus 201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R------------~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR------------NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCC------------eEEEEeCCHHHHHHHHHHHc
Confidence 34555555556899999999999999999988874 99999999999999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.36 E-value=0.052 Score=48.22 Aligned_cols=101 Identities=18% Similarity=0.107 Sum_probs=60.6
Q ss_pred HHHhh-ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 59 AIDKM-VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 59 ai~~~-~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++++. ++++.+||-+|+|. |.+++.++++.+ .+|+++|.++.-++.+++ .|.. .++..+.
T Consensus 19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-----------~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~ 80 (166)
T d1llua2 19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-----------LHVAAIDIDDAKLELARK----LGAS---LTVNARQ 80 (166)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-----------CEEEEEESCHHHHHHHHH----TTCS---EEEETTT
T ss_pred HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcC-----------CccceecchhhHHHhhhc----cCcc---ccccccc
Confidence 44443 77899999999984 788888888765 689999999988877764 4543 2233232
Q ss_pred cccccc-cCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 137 DELEVG-VDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 137 ~~l~~~-~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
.+.... ......+|.++-+. ..-..+..++ ++|+++|+++.
T Consensus 81 ~~~~~~~~~~~~g~~~~i~~~--------~~~~~~~~~~-~~l~~~G~iv~ 122 (166)
T d1llua2 81 EDPVEAIQRDIGGAHGVLVTA--------VSNSAFGQAI-GMARRGGTIAL 122 (166)
T ss_dssp SCHHHHHHHHHSSEEEEEECC--------SCHHHHHHHH-TTEEEEEEEEE
T ss_pred hhHHHHHHHhhcCCccccccc--------ccchHHHHHH-HHhcCCcEEEE
Confidence 221100 00112234333221 1134455454 58999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.25 E-value=0.036 Score=51.06 Aligned_cols=93 Identities=15% Similarity=-0.051 Sum_probs=59.0
Q ss_pred hHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 379 ERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 379 ~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
+++.+|.|.--| +|+. ++.. ...+|..||++|+| |+++..+|++-|+++|++++. ++.-.+ .+++.|..
T Consensus 2 ~d~~~l~d~~~t-a~~a-~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~--~~~rl~----~a~~~Ga~ 72 (195)
T d1kola2 2 RDLTCLSDILPT-GYHG-AVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL--NPARLA----HAKAQGFE 72 (195)
T ss_dssp HHHGGGGTHHHH-HHHH-HHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHH----HHHHTTCE
T ss_pred chHHhcccHHHH-HHHH-HHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecc--cchhhH----hhhhcccc
Confidence 356788887655 5754 5543 44578899999999 888888887656999999998 543222 34555653
Q ss_pred cccEEEeeccccccccc--cc-CCccccEEE
Q 044245 457 IDRVEILQKGKKCLTMD--DT-QQKKVDLLI 484 (694)
Q Consensus 457 ~~~i~vi~~~~~~~~~~--~l-~~~~vDviv 484 (694)
.++....+++... ++ .+..+|+++
T Consensus 73 ----~~~~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 73 ----IADLSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp ----EEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred ----EEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence 2343332333211 11 345689988
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.24 E-value=0.023 Score=56.07 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+...+.|+..-.+|..|||--||||..+.+|.+.|. +.+|+|++++.++.|++++..+
T Consensus 238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR------------~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR------------KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC------------EEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCC------------cEEEEeCCHHHHHHHHHHHHhc
Confidence 344555665666899999999999999999988874 9999999999999998876544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.17 E-value=0.046 Score=52.76 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 54 RAYRLAIDKMVTKSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 54 ~~y~~ai~~~~~~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+...+.|+..-.+|..|||--+|||..+++|.+.|. +.+++|+++...+.|+++++..
T Consensus 195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR------------~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR------------NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC------------EEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC------------eEEEEeCCHHHHHHHHHHHHHh
Confidence 345666666667899999999999999999999874 9999999999999999998753
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.07 E-value=0.069 Score=50.92 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhccC-CCEEEEEcCCCCHHHHHHHHHcCCCCCCcc-------------------------------CCC
Q 044245 52 RNRAYRLAIDKMVTK-SCHVLDIGAGTGLLSMMAARAMGSSDSTTS-------------------------------LNT 99 (694)
Q Consensus 52 r~~~y~~ai~~~~~~-~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~-------------------------------~~~ 99 (694)
..+...+++....-. +..++|--||||.+.+.+|..... ..... ...
T Consensus 35 aa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~n-iaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~ 113 (249)
T d1o9ga_ 35 ATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE 113 (249)
T ss_dssp HHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhC-cCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence 334444555433223 356999999999999888865320 00000 001
Q ss_pred ccEEEEEcCCHHHHHHH---HHHHHHcCCCCcEEEEecccccccccc--CCCCCccEEEEccccccccC
Q 044245 100 KGMVTACESYLPMVKLM---KKVLHVNGMGRNIKVINKRSDELEVGV--DIDSRADILVSEILDSELLG 163 (694)
Q Consensus 100 ~~~V~avE~s~~~~~~A---~~~~~~ngl~~~I~vi~~~~~~l~~~~--~l~~~~DlIvse~~~~~l~~ 163 (694)
..++++.|.++.+++.| ++|++..|+.+.|.+...+..+..... ..+...++||+|+.+-.-++
T Consensus 114 ~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~ 182 (249)
T d1o9ga_ 114 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTH 182 (249)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSS
T ss_pred cCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccccc
Confidence 13578999999999988 468889999999999999976643211 12346789999998776664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.75 E-value=0.03 Score=50.85 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCF 455 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l 455 (694)
+|+ |+.+.....+|..||++|+| |++....|++-||++|++++. ++.-.++ +++.|.
T Consensus 16 a~~-al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~--~~~~~~~----a~~lGa 74 (182)
T d1vj0a2 16 AYH-AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG--SPNRLKL----AEEIGA 74 (182)
T ss_dssp HHH-HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES--CHHHHHH----HHHTTC
T ss_pred HHH-HHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccc--ccccccc----cccccc
Confidence 443 55544444578899999999 888888888766999999988 5543334 445565
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.33 E-value=0.12 Score=45.77 Aligned_cols=45 Identities=27% Similarity=0.202 Sum_probs=36.4
Q ss_pred hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 63 MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 63 ~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
.+.++.+||-.|+|+ |.+.+.++++.+ .+|++++.++.-++.+++
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g-----------~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMG-----------LNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTT-----------CEEEEECSCHHHHHHHHH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCC-----------CeEeccCCCHHHhhhhhh
Confidence 478899999999986 677777777765 589999999988777654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.04 E-value=0.067 Score=48.05 Aligned_cols=84 Identities=5% Similarity=-0.003 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 391 LSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 391 ~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
.+|+.++.... ..++..|+.+|+| |+++...|++-|+++|+.++. ++.-.++ +++.|.. .++....+
T Consensus 15 Ta~~a~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~----a~~~Ga~----~~i~~~~~ 83 (174)
T d1f8fa2 15 TGAGACINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI--VESRLEL----AKQLGAT----HVINSKTQ 83 (174)
T ss_dssp HHHHHHHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHH----HHHHTCS----EEEETTTS
T ss_pred HHHHHHHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeecc--HHHHHHH----HHHcCCe----EEEeCCCc
Confidence 46766655443 3478899999999 788877777645899999887 4432233 3445553 23433333
Q ss_pred ccccc--ccCCccccEEEc
Q 044245 469 CLTMD--DTQQKKVDLLIG 485 (694)
Q Consensus 469 ~~~~~--~l~~~~vDvivs 485 (694)
++... ++.+..+|++|=
T Consensus 84 ~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 84 DPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp CHHHHHHHHTTSCEEEEEE
T ss_pred CHHHHHHHHcCCCCcEEEE
Confidence 33221 222457898773
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.034 Score=50.00 Aligned_cols=95 Identities=25% Similarity=0.217 Sum_probs=58.3
Q ss_pred ccCCCEEEEEcC-C-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGA-G-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~-G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
+.++.+||-.|+ | .|.+++.+|++.. .+|++++.+++-.+.+++ .|..+ ++.-+-.++..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G-----------~~vi~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~ 87 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYG-----------LKILGTAGTEEGQKIVLQ----NGAHE---VFNHREVNYID 87 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHH----TTCSE---EEETTSTTHHH
T ss_pred CCCCCEEEEEeccccccccccccccccC-----------cccccccccccccccccc----cCccc---ccccccccHHH
Confidence 678999999996 3 5777888888765 589999888876666653 56542 23322222110
Q ss_pred ---ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 142 ---GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 142 ---~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...-.+.+|+++.. .+ -+.+...+ +.|+|+|+++-
T Consensus 88 ~i~~~t~~~g~d~v~d~-~g--------~~~~~~~~-~~l~~~G~iv~ 125 (174)
T d1yb5a2 88 KIKKYVGEKGIDIIIEM-LA--------NVNLSKDL-SLLSHGGRVIV 125 (174)
T ss_dssp HHHHHHCTTCEEEEEES-CH--------HHHHHHHH-HHEEEEEEEEE
T ss_pred HhhhhhccCCceEEeec-cc--------HHHHHHHH-hccCCCCEEEE
Confidence 00012569998852 22 22333333 48899998873
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.85 E-value=0.12 Score=47.35 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=68.9
Q ss_pred hhCCHHHHHHHHHHHHh-hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHc
Q 044245 46 MLNDSYRNRAYRLAIDK-MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVN 123 (694)
Q Consensus 46 ml~D~~r~~~y~~ai~~-~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~n 123 (694)
+|.|.. .-+|.. +++ .+.+|.+||.+|||. |+++..++++.. ..+|+++|.++.-++.|++ .
T Consensus 6 ~l~d~~-~ta~~a-~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g----------a~~Vi~~d~~~~rl~~a~~----~ 69 (195)
T d1kola2 6 CLSDIL-PTGYHG-AVTAGVGPGSTVYVAGAGPVGLAAAASARLLG----------AAVVIVGDLNPARLAHAKA----Q 69 (195)
T ss_dssp GGGTHH-HHHHHH-HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT----------CSEEEEEESCHHHHHHHHH----T
T ss_pred hcccHH-HHHHHH-HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhc----------ccceeeecccchhhHhhhh----c
Confidence 455554 234443 444 478899999999997 777777777643 3699999999998888875 3
Q ss_pred CCCCcEEEEeccccccccc-cC--CCCCccEEEEccccccc--------cCCChHHHHHHHHHhccCCCCeEE
Q 044245 124 GMGRNIKVINKRSDELEVG-VD--IDSRADILVSEILDSEL--------LGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 124 gl~~~I~vi~~~~~~l~~~-~~--l~~~~DlIvse~~~~~l--------~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
|.. .++...-.++... .+ -...+|+++ |..+.-. ...+....+..++ +.++|+|+++
T Consensus 70 Ga~---~~~~~~~~~~~~~i~~~t~g~g~D~vi-d~vG~~~~~~~~~~~~~~~~~~~l~~~~-~~~r~gG~v~ 137 (195)
T d1kola2 70 GFE---IADLSLDTPLHEQIAALLGEPEVDCAV-DAVGFEARGHGHEGAKHEAPATVLNSLM-QVTRVAGKIG 137 (195)
T ss_dssp TCE---EEETTSSSCHHHHHHHHHSSSCEEEEE-ECCCTTCBCSSTTGGGSBCTTHHHHHHH-HHEEEEEEEE
T ss_pred ccc---EEEeCCCcCHHHHHHHHhCCCCcEEEE-ECccccccCCcccceeecCcHHHHHHHH-HHHhcCCEEE
Confidence 532 2332222222100 00 123589887 3333110 0111223444444 4899999885
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.44 E-value=0.12 Score=46.07 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=58.5
Q ss_pred ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc-
Q 044245 64 VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV- 141 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~- 141 (694)
+.++..||-+|+|. |.++..++++.. ..+|+++|.++.-++.+++ .|.. .++..+-+....
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g----------~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~ 92 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT----------PATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQV 92 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC----------CCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHH
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc----------CcccccccchhHHHHHHhh----cccc---eeecCcccHHHHH
Confidence 67899999999985 666666666543 2689999999887777764 3432 234333222110
Q ss_pred -ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 142 -GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 142 -~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
...-.+.+|+++-. .+ ....+..++ +.|+++|+++-
T Consensus 93 ~~~~~~~g~d~vid~-~g-------~~~~~~~a~-~~l~~~G~iv~ 129 (172)
T d1h2ba2 93 MELTRGRGVNVAMDF-VG-------SQATVDYTP-YLLGRMGRLII 129 (172)
T ss_dssp HHHTTTCCEEEEEES-SC-------CHHHHHHGG-GGEEEEEEEEE
T ss_pred HHhhCCCCceEEEEe-cC-------cchHHHHHH-HHHhCCCEEEE
Confidence 00012458988842 22 123344444 48999998874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.20 E-value=0.094 Score=46.82 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=40.2
Q ss_pred HHHHHHHHh-hccCCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 54 RAYRLAIDK-MVTKSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 54 ~~y~~ai~~-~~~~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
.+|...+++ .+++|.+||-.||| .|.+++.++++.. ...|++++.++.-++.+++
T Consensus 15 Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G----------~~~vi~~~~~~~k~~~ak~ 71 (176)
T d2fzwa2 15 TGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG----------ASRIIGVDINKDKFARAKE 71 (176)
T ss_dssp HHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT----------CSEEEEECSCGGGHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHh----------cCceEEEcccHHHHHHHHH
Confidence 355655554 38899999999998 3456666666543 3689999999988887775
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.80 E-value=0.058 Score=48.13 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=62.4
Q ss_pred HHHHHHHh-hccCCCEEEEEcCC--CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDK-MVTKSCHVLDIGAG--TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~-~~~~~~~VLDiG~G--tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
+|. ++++ .+.++.+||-+|+| .|.+++.++++.. ..+|+++|.++.-++.+++ .|.. .+
T Consensus 16 a~~-al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g----------~~~V~~~~~~~~~~~~~~~----~Ga~---~~ 77 (170)
T d1jvba2 16 TYR-AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS----------GATIIGVDVREEAVEAAKR----AGAD---YV 77 (170)
T ss_dssp HHH-HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT----------CCEEEEEESSHHHHHHHHH----HTCS---EE
T ss_pred HHH-HHHHhCCCCCCEEEEEeccccceeeeeecccccc----------cccccccccchhhHHHHHH----cCCc---ee
Confidence 444 3444 47789999999973 4566666666543 2589999999988777765 4543 23
Q ss_pred Eecccccccc---ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 132 INKRSDELEV---GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 132 i~~~~~~l~~---~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
+..+..+... ....++.+|+++-. .+ ....+..+ -+.++|+|+++--
T Consensus 78 i~~~~~~~~~~~~~~~~~~~~d~vid~-~g-------~~~~~~~a-~~~l~~~G~iv~~ 127 (170)
T d1jvba2 78 INASMQDPLAEIRRITESKGVDAVIDL-NN-------SEKTLSVY-PKALAKQGKYVMV 127 (170)
T ss_dssp EETTTSCHHHHHHHHTTTSCEEEEEES-CC-------CHHHHTTG-GGGEEEEEEEEEC
T ss_pred eccCCcCHHHHHHHHhhcccchhhhcc-cc-------cchHHHhh-hhhcccCCEEEEe
Confidence 3333332210 00113469988742 22 12223333 3589999988633
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.13 Score=45.86 Aligned_cols=57 Identities=16% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
+|+ |+++.- ..++..|+.+|+| |++..+.|++-|+++|++++. ++.-.+ .+++.|..
T Consensus 15 a~~-a~~~~~-~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~--~~~rl~----~a~~~Ga~ 73 (171)
T d1pl8a2 15 GIH-ACRRGG-VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL--SATRLS----KAKEIGAD 73 (171)
T ss_dssp HHH-HHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHH----HHHHTTCS
T ss_pred HHH-HHHHhC-CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccC--CHHHHH----HHHHhCCc
Confidence 444 444432 3467899999999 888888888756999999998 444223 45566763
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.46 E-value=0.12 Score=45.81 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=55.3
Q ss_pred hhHHhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecC-C--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCC
Q 044245 378 PERIAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADD-S--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNC 454 (694)
Q Consensus 378 r~~i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~-G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~ 454 (694)
+.+.+.|....-| +|+ |+.+. ...++..|+++|+ | |++..+.+++.|+++|+.++. ++.-.+ .+++.|
T Consensus 3 ~~eAA~l~c~~~T-a~~-al~~~-~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~----~~~~~G 73 (170)
T d1jvba2 3 AVEAAPLTCSGIT-TYR-AVRKA-SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVE----AAKRAG 73 (170)
T ss_dssp HHHHGGGGTHHHH-HHH-HHHHT-TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHH----HHHHHT
T ss_pred HHHHHHHHHHHHH-HHH-HHHHh-CCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHH----HHHHcC
Confidence 3444555555544 676 56553 3457788999996 6 777776666545899999998 443223 345556
Q ss_pred cccccEEEeeccccccccc---ccCCccccEEEc
Q 044245 455 FSIDRVEILQKGKKCLTMD---DTQQKKVDLLIG 485 (694)
Q Consensus 455 l~~~~i~vi~~~~~~~~~~---~l~~~~vDvivs 485 (694)
.. .++....++.... ...++.+|+++-
T Consensus 74 a~----~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 74 AD----YVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CS----EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred Cc----eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 53 2333333332211 112466898875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.36 E-value=0.14 Score=45.79 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=49.4
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHH-HHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccc
Q 044245 382 AIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLT-ICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSID 458 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLs-l~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~ 458 (694)
+.|-...=| +|...++. ....+|..||++|+| |++. ++|++. |+++|++++. ++.-.+ .++..|.. +
T Consensus 7 a~l~ca~~T-ay~al~~~-~~vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~--~~~k~~----~a~~~Ga~-~ 76 (176)
T d2jhfa2 7 CLIGCGFST-GYGSAVKV-AKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDI--NKDKFA----KAKEVGAT-E 76 (176)
T ss_dssp GGGGTHHHH-HHHHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECS--CGGGHH----HHHHTTCS-E
T ss_pred hHhhcHHHH-HHHHHHHh-hCCCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecC--cHHHHH----HHHHhCCe-e
Confidence 344333333 45544433 334578899999998 4444 444445 4899999998 443222 34556654 2
Q ss_pred cEEEeeccccc-ccc--cccCCccccEEEcc
Q 044245 459 RVEILQKGKKC-LTM--DDTQQKKVDLLIGE 486 (694)
Q Consensus 459 ~i~vi~~~~~~-~~~--~~l~~~~vDvivsE 486 (694)
.+.....++ +.. ....+..+|++|--
T Consensus 77 --~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 77 --CVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp --EECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred --EEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 222222111 111 11234679988754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.11 Score=46.31 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=61.6
Q ss_pred HHHh-hccCCCEEEEEcCC-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-c
Q 044245 59 AIDK-MVTKSCHVLDIGAG-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINK-R 135 (694)
Q Consensus 59 ai~~-~~~~~~~VLDiG~G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~-~ 135 (694)
++++ .+.+|.+||.+|+| .|+++..++++.. .+|+++|.++..++.|++ .|.. . ++.. +
T Consensus 19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G-----------~~vi~~~~~~~k~~~a~~----lGa~-~--~i~~~~ 80 (168)
T d1piwa2 19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMG-----------AETYVISRSSRKREDAMK----MGAD-H--YIATLE 80 (168)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHT-----------CEEEEEESSSTTHHHHHH----HTCS-E--EEEGGG
T ss_pred HHHHhCcCCCCEEEEECCCCcchhHHHHhhhcc-----------ccccccccchhHHHHhhc----cCCc-E--Eeeccc
Confidence 3443 47889999999998 5788888887765 589999999988887765 4643 2 2222 1
Q ss_pred ccccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 136 SDELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 136 ~~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
..+.. ....+.+|+++. ..+... +.. +. ..-+.|+++|+++.
T Consensus 81 ~~~~~--~~~~~~~d~vi~-~~~~~~--~~~---~~-~~~~~l~~~G~iv~ 122 (168)
T d1piwa2 81 EGDWG--EKYFDTFDLIVV-CASSLT--DID---FN-IMPKAMKVGGRIVS 122 (168)
T ss_dssp TSCHH--HHSCSCEEEEEE-CCSCST--TCC---TT-TGGGGEEEEEEEEE
T ss_pred hHHHH--HhhhcccceEEE-EecCCc--cch---HH-HHHHHhhccceEEE
Confidence 11211 123357998874 222111 101 11 22347899998874
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.33 Score=47.25 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=59.4
Q ss_pred hcCCCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 401 LQGRVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 401 ~~~~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
....+|..|||+-+| | =-..+|+..++..+|+|+|.+ +.-.+.+++.++..|+. +|++...+...+...+...+
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~--~~R~~~l~~~l~r~g~~--~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLD--AKRLASMATLLARAGVS--CCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTTCGGGT
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCC--HHHHHHHHHHHHhcCcc--ceeeeehhhhhhcccccccc
Confidence 344578899999988 4 344455555556799999994 33224568889999985 68888877665544322236
Q ss_pred cccEEEccccccCCcccc
Q 044245 479 KVDLLIGEPYYFGNDGML 496 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l 496 (694)
++|.|+..+=+++ +|++
T Consensus 166 ~fD~VL~DaPCSg-~G~~ 182 (293)
T d2b9ea1 166 EVHYILLDPSCSG-SGMP 182 (293)
T ss_dssp TEEEEEECCCCCC-----
T ss_pred eeeEEeecCcccc-hhhh
Confidence 7999999854544 4554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.13 E-value=0.14 Score=45.69 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
.+.|.+..-| +|+..++. ....+|..||+.|+| |+++...|++-|+++|++++. ++.-.++ +++.|..
T Consensus 6 aa~l~ca~~T-ay~al~~~-~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~----ak~lGa~ 75 (176)
T d2fzwa2 6 VCLLGCGIST-GYGAAVNT-AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFAR----AKEFGAT 75 (176)
T ss_dssp HGGGGTHHHH-HHHHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHH----HHHHTCS
T ss_pred HhHhhcHHHH-HHHHHHHh-hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHH----HHHhCCc
Confidence 4455555544 57665543 333578899999999 677776666545999999988 4443334 4455653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=0.14 Score=50.76 Aligned_cols=58 Identities=7% Similarity=-0.077 Sum_probs=43.3
Q ss_pred CCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 405 VQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 405 ~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
++..||+||-| |.|+-...+++++++|+++|. .+.....+++... . +++++++++.-.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~--D~~~~~~L~~~~~----~-~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK--RSSLYKFLNAKFE----G-SPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECC--CHHHHHHHHHHTT----T-SSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEEC--CHHHHHHHHHhcc----C-CCcEEEeCchhh
Confidence 35679999999 999877777655899999999 5655556555432 2 578999987643
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.94 E-value=0.52 Score=44.47 Aligned_cols=72 Identities=10% Similarity=-0.072 Sum_probs=41.7
Q ss_pred HHHHhcCCCC-CcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccccccc
Q 044245 397 MRNALQGRVQ-PLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMD 473 (694)
Q Consensus 397 i~~~~~~~~~-~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~ 473 (694)
|.+....|.+ +.|||||+| |.++...++ .- --+++..+- +. +++..+.. ++|+++.++.- +
T Consensus 72 l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl---p~-------vi~~~~~~-~ri~~~~gd~~----~ 135 (244)
T d1fp1d2 72 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL---PQ-------VIENAPPL-SGIEHVGGDMF----A 135 (244)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC---HH-------HHTTCCCC-TTEEEEECCTT----T
T ss_pred HHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc---hh-------hhhccCCC-CCeEEecCCcc----c
Confidence 3333433443 689999999 765555554 43 346666654 21 23444455 89999988632 2
Q ss_pred ccCCccccEEEcc
Q 044245 474 DTQQKKVDLLIGE 486 (694)
Q Consensus 474 ~l~~~~vDvivsE 486 (694)
.++ ..|+++.-
T Consensus 136 ~~p--~~D~~~l~ 146 (244)
T d1fp1d2 136 SVP--QGDAMILK 146 (244)
T ss_dssp CCC--CEEEEEEE
T ss_pred ccc--cceEEEEe
Confidence 232 34877654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.91 E-value=0.13 Score=46.27 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=62.3
Q ss_pred HHHHHHHHhh-ccCCCEEEEEcCCC--CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 044245 54 RAYRLAIDKM-VTKSCHVLDIGAGT--GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIK 130 (694)
Q Consensus 54 ~~y~~ai~~~-~~~~~~VLDiG~Gt--G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~ 130 (694)
.+|....+.. +++|.+||-.|+|. |..++.+++..+ .+|+++..+++-.+.+++ .|.. .+
T Consensus 16 TA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G-----------a~vi~~~~~~~~~~~~~~----~Ga~-~v- 78 (182)
T d1v3va2 16 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG-----------CKVVGAAGSDEKIAYLKQ----IGFD-AA- 78 (182)
T ss_dssp HHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHH----TTCS-EE-
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccC-----------CEEEEeCCCHHHHHHHHh----hhhh-hh-
Confidence 4555544443 67899999888865 466667777765 699999988877666654 4543 22
Q ss_pred EEeccccccc---cccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 131 VINKRSDELE---VGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 131 vi~~~~~~l~---~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+..+..+.. ....-++.+|+|+- .++ -+.+. ..-+.|+++|+++-
T Consensus 79 -i~~~~~~~~~~~~~~~~~~Gvd~v~D-~vG--------~~~~~-~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 79 -FNYKTVNSLEEALKKASPDGYDCYFD-NVG--------GEFLN-TVLSQMKDFGKIAI 126 (182)
T ss_dssp -EETTSCSCHHHHHHHHCTTCEEEEEE-SSC--------HHHHH-HHGGGEEEEEEEEE
T ss_pred -cccccccHHHHHHHHhhcCCCceeEE-ecC--------chhhh-hhhhhccCCCeEEe
Confidence 222222211 00112356999873 233 23333 34458999998773
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.59 E-value=0.18 Score=44.92 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=41.6
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 381 IAIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 381 i~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
.++|.+.. ..+|+..++. ....++..|+++|+| |++++..+++-|+++|++++. ++.-.++ ++.-|..
T Consensus 6 aa~l~ca~-~Tay~a~~~~-a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~----a~~~GAd 75 (175)
T d1cdoa2 6 VCLLGCGV-STGFGAAVNT-AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEK----AKVFGAT 75 (175)
T ss_dssp HGGGGTHH-HHHHHHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHH----HHHTTCC
T ss_pred HHHhhcHH-HHHHHHHHHh-hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecc--hHHHHHH----HHHcCCc
Confidence 34555433 3356655544 334578899999999 566655555445899999998 4432333 4455553
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=90.38 E-value=0.33 Score=47.33 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=51.8
Q ss_pred EEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCCCC
Q 044245 69 HVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDIDSR 148 (694)
Q Consensus 69 ~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~~~ 148 (694)
+|+|+-||.|.+++-+-++|- ..+.++|+++.+++..+.| .++ +++.+|++++... ++ .+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~-----------~~~~a~e~d~~a~~~~~~N-----~~~--~~~~~Di~~~~~~-~~-~~ 61 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGF-----------RIICANEYDKSIWKTYESN-----HSA--KLIKGDISKISSD-EF-PK 61 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTC-----------EEEEEEECCHHHHHHHHHH-----CCS--EEEESCTTTSCGG-GS-CC
T ss_pred eEEEeCcCcCHHHHHHHHCCC-----------EEEEEEeCCHHHHHHHHHH-----CCC--CCccCChhhCCHh-Hc-cc
Confidence 699999999999999888885 4678999999888776654 232 4567899888642 23 47
Q ss_pred ccEEEEcc
Q 044245 149 ADILVSEI 156 (694)
Q Consensus 149 ~DlIvse~ 156 (694)
+|+++.-+
T Consensus 62 ~dll~~g~ 69 (324)
T d1dcta_ 62 CDGIIGGP 69 (324)
T ss_dssp CSEEEECC
T ss_pred ccEEeecc
Confidence 99998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.88 E-value=0.22 Score=44.04 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHH
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYL 446 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~ 446 (694)
+|+ |+++.. ..++..|+++|+| |++....|++-|+ +|++++. ++.-.+++
T Consensus 15 a~~-a~~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~--~~~r~~~a 66 (170)
T d1e3ja2 15 GVH-ACRRAG-VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTAR--SPRRLEVA 66 (170)
T ss_dssp HHH-HHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES--CHHHHHHH
T ss_pred HHH-HHHHhC-CCCCCEEEEEcccccchhhHhhHhhhcc-cccccch--HHHHHHHH
Confidence 344 344432 3467889999999 8888888887666 7999998 55433333
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.63 E-value=0.18 Score=44.77 Aligned_cols=43 Identities=0% Similarity=-0.134 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCC
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPG 437 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~ 437 (694)
+| .|+.+. ...+|..|+++|+| |++....||+-|+ +|++++.+
T Consensus 16 a~-~al~~~-~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~ 60 (168)
T d1piwa2 16 VY-SPLVRN-GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRS 60 (168)
T ss_dssp HH-HHHHHT-TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred HH-HHHHHh-CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccc
Confidence 45 456554 34578899999999 8888888887557 69898873
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.54 E-value=0.26 Score=45.30 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=46.6
Q ss_pred HHHHhcCCCCCcEEEecCC-c-hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-V-FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDD 474 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-g-iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~ 474 (694)
+.+.....++..|+|.+|| | +|..+..+.+...+|+++|- .+.+. .+. .+..++.+......
T Consensus 11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei--~~~~~----------~~~-~~~~~~~~~~~~~~--- 74 (223)
T d2ih2a1 11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEI--DPKAL----------DLP-PWAEGILADFLLWE--- 74 (223)
T ss_dssp HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEES--CTTTC----------CCC-TTEEEEESCGGGCC---
T ss_pred HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeec--CHHHH----------hhc-ccceeeeeehhccc---
Confidence 4444444567899999999 6 55555555555788999988 44321 111 23455665432221
Q ss_pred cCCccccEEEccccc
Q 044245 475 TQQKKVDLLIGEPYY 489 (694)
Q Consensus 475 l~~~~vDvivsE~~~ 489 (694)
...+.|++|+.|=|
T Consensus 75 -~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 75 -PGEAFDLILGNPPY 88 (223)
T ss_dssp -CSSCEEEEEECCCC
T ss_pred -cccccceecccCcc
Confidence 24789999998633
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.86 E-value=0.33 Score=43.01 Aligned_cols=85 Identities=8% Similarity=0.077 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKC 469 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~ 469 (694)
+|+..-.......++..|+.+|+| |++....|++-|+++|++++. ++.-.+ .+++.|.. .++....+.
T Consensus 19 a~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~----~~~~~ga~----~~i~~~~~~ 88 (172)
T d1h2ba2 19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK----LAERLGAD----HVVDARRDP 88 (172)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH----HHHHTTCS----EEEETTSCH
T ss_pred HHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHH----HHhhcccc----eeecCcccH
Confidence 565443333334578899999999 777766666434899999988 443222 34455543 334332222
Q ss_pred ccc--cccCCccccEEEcc
Q 044245 470 LTM--DDTQQKKVDLLIGE 486 (694)
Q Consensus 470 ~~~--~~l~~~~vDvivsE 486 (694)
++. ....++.+|++|--
T Consensus 89 ~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 89 VKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp HHHHHHHTTTCCEEEEEES
T ss_pred HHHHHHhhCCCCceEEEEe
Confidence 211 11134668988754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.77 E-value=0.33 Score=42.67 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
+|+ |+++. ...++..|+++|+| |++.+.+||+.| .+|++++. ++.-.+ .+++.|..
T Consensus 16 a~~-al~~~-~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~--~~~~~~----~a~~~Ga~ 73 (166)
T d1llua2 16 VYK-GLKQT-NARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDI--DDAKLE----LARKLGAS 73 (166)
T ss_dssp HHH-HHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEES--CHHHHH----HHHHTTCS
T ss_pred HHH-HHHHh-CCCCCCEEEEeeccccHHHHHHHHHHcC-Cccceecc--hhhHHH----hhhccCcc
Confidence 464 57654 44578899999999 888888888866 58999988 443222 34556653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.74 E-value=0.27 Score=44.03 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=58.8
Q ss_pred ccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccc--
Q 044245 64 VTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELE-- 140 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~-- 140 (694)
+.+|.+||-+|+|. |.+.+.+|++.+ ..+|+++|.++.-++.|++ .|.. . ++...-.+..
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G----------a~~Vi~~~~~~~~~~~a~~----lGa~--~-vi~~~~~~~~~~ 88 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLG----------AENVIVIAGSPNRLKLAEE----IGAD--L-TLNRRETSVEER 88 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT----------BSEEEEEESCHHHHHHHHH----TTCS--E-EEETTTSCHHHH
T ss_pred CCCCCEEEEECCCccchhheecccccc----------ccccccccccccccccccc----ccce--E-EEeccccchHHH
Confidence 56799999999984 778888887754 3589999999999888765 3542 2 2322222111
Q ss_pred ---ccc-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 141 ---VGV-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 141 ---~~~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
... .....+|+|+- ..+. +. .+..+. ++|+++|+++
T Consensus 89 ~~~i~~~~~~~g~Dvvid-~vG~----~~---~~~~a~-~~l~~~G~iv 128 (182)
T d1vj0a2 89 RKAIMDITHGRGADFILE-ATGD----SR---ALLEGS-ELLRRGGFYS 128 (182)
T ss_dssp HHHHHHHTTTSCEEEEEE-CSSC----TT---HHHHHH-HHEEEEEEEE
T ss_pred HHHHHHhhCCCCceEEee-cCCc----hh---HHHHHH-HHhcCCCEEE
Confidence 000 01235899873 3331 22 233333 4889999875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.66 E-value=0.16 Score=45.33 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEecC-C--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADD-S--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~-G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
+|+ +|.+.....++..||+.|+ | |++.+..|++-|+ +|+++.. ++...+ .+++.|.. + ++.-..+
T Consensus 16 A~~-al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~--~~~~~~----~~~~~Ga~-~---vi~~~~~ 83 (174)
T d1yb5a2 16 AYR-ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAG--TEEGQK----IVLQNGAH-E---VFNHREV 83 (174)
T ss_dssp HHH-HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES--SHHHHH----HHHHTTCS-E---EEETTST
T ss_pred HHH-HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccc--cccccc----cccccCcc-c---ccccccc
Confidence 344 3443334457889999996 6 7888888887667 5777765 343222 34556764 2 3332222
Q ss_pred ccccc---ccCCccccEEEc
Q 044245 469 CLTMD---DTQQKKVDLLIG 485 (694)
Q Consensus 469 ~~~~~---~l~~~~vDvivs 485 (694)
++... ...++.+|+++-
T Consensus 84 ~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 84 NYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp THHHHHHHHHCTTCEEEEEE
T ss_pred cHHHHhhhhhccCCceEEee
Confidence 22211 123567998875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=88.66 E-value=0.18 Score=44.72 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=59.7
Q ss_pred CCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 67 SCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 67 ~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
..+|+-||+|. |+-++..|+... .+|++.|.+++.++..+.... .+++....+...+.. .
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lG-----------A~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~---~ 92 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLG-----------AQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIET---A 92 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHH---H
T ss_pred CcEEEEECCChHHHHHHHHHhhCC-----------CEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHH---h
Confidence 57999999995 777777777655 599999999988877765432 245555555444431 1
Q ss_pred CCCccEEEEccccccccCCChHHH-HHHHHHhccCCCCeEE
Q 044245 146 DSRADILVSEILDSELLGEGLIPT-LQHAHDRLLVENPLTV 185 (694)
Q Consensus 146 ~~~~DlIvse~~~~~l~~e~~l~~-l~~~~~~~L~p~G~ii 185 (694)
-.++|+||+- .++.-.--|. +-...-+.++||..++
T Consensus 93 ~~~aDivI~a----alipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 93 VAEADLLIGA----VLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp HHTCSEEEEC----CCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred hccCcEEEEe----eecCCcccCeeecHHHHhhcCCCcEEE
Confidence 1479999984 2322111111 1112224678887776
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=88.44 E-value=0.46 Score=46.51 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCC
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDI 145 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l 145 (694)
.+.+|||+-||.|.+++-+.++|. ..|.|+|.++.+++..+.|.. +. .++|+.++... ++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~-----------~~v~a~e~d~~a~~~~~~N~~-----~~---~~~Di~~~~~~-~~ 69 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGA-----------ECVYSNEWDKYAQEVYEMNFG-----EK---PEGDITQVNEK-TI 69 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-----------EEEEEECCCHHHHHHHHHHHS-----CC---CBSCGGGSCGG-GS
T ss_pred CCCeEEEECccccHHHHHHHHCCC-----------eEEEEEeCCHHHHHHHHHHCC-----CC---CcCchhcCchh-hc
Confidence 468999999999999999988875 467889999999888876642 21 25777776532 22
Q ss_pred CCCccEEEEcc
Q 044245 146 DSRADILVSEI 156 (694)
Q Consensus 146 ~~~~DlIvse~ 156 (694)
..+|+++.-+
T Consensus 70 -~~~Dll~ggp 79 (327)
T d2c7pa1 70 -PDHDILCAGF 79 (327)
T ss_dssp -CCCSEEEEEC
T ss_pred -ceeeeeeccc
Confidence 4689998755
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=88.12 E-value=0.34 Score=43.59 Aligned_cols=84 Identities=8% Similarity=-0.030 Sum_probs=52.5
Q ss_pred HHHHHHHH--HHHHhcC-CCCCcEEEecCC-chHHHHHHH-cCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEe
Q 044245 389 WRLSMVMA--MRNALQG-RVQPLCVVADDS-VFLTICVAR-LSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEIL 463 (694)
Q Consensus 389 r~~~y~~A--i~~~~~~-~~~~~vldig~G-giLsl~aA~-~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi 463 (694)
|.+++.+- |.+.... .++..|||||++ |=.+-.+++ .+...+|++++- .++ +.+ +.+.++
T Consensus 3 rsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl--~~~-----------~~i--~~~~~~ 67 (180)
T d1ej0a_ 3 RSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL--LPM-----------DPI--VGVDFL 67 (180)
T ss_dssp SCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEES--SCC-----------CCC--TTEEEE
T ss_pred hhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeec--ccc-----------ccc--CCceEe
Confidence 33444444 3333333 356899999999 767766665 454678999977 443 122 467788
Q ss_pred eccccccccc-----ccCCccccEEEccc
Q 044245 464 QKGKKCLTMD-----DTQQKKVDLLIGEP 487 (694)
Q Consensus 464 ~~~~~~~~~~-----~l~~~~vDvivsE~ 487 (694)
++..++.... .....++|+|+|.+
T Consensus 68 ~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ 96 (180)
T d1ej0a_ 68 QGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp ESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ecccccchhhhhhhhhccCcceeEEEecc
Confidence 8876543321 12357899999984
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.83 E-value=0.77 Score=46.50 Aligned_cols=60 Identities=18% Similarity=0.037 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC---CcEEEEe
Q 044245 66 KSCHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG---RNIKVIN 133 (694)
Q Consensus 66 ~~~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~---~~I~vi~ 133 (694)
++.+++|||+=.|..+..+++.... ...+|+++|.++...+..+++++.|+.. .+|.++.
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~--------~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKG--------KFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTS--------CCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCC--------CCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 3579999999999888877765431 1258999999999999999999988754 3566654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.67 Score=43.95 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=58.2
Q ss_pred cCCCEEEEEcCCCCH---HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 65 TKSCHVLDIGAGTGL---LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 65 ~~~~~VLDiG~GtG~---lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
.++++||--|+++|+ ++..+++.|+ +|+.++.++..++.+.+.++..+...++..+..|..+-.-
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~------------~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~ 75 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL------------KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEED 75 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHH
Confidence 358999999988874 3445555554 8999999999888888888877776789999999876431
Q ss_pred cc-------CCCCCccEEEEcc
Q 044245 142 GV-------DIDSRADILVSEI 156 (694)
Q Consensus 142 ~~-------~l~~~~DlIvse~ 156 (694)
-. ..-++.|++|.+-
T Consensus 76 v~~~v~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 76 ILSMFSAIRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEecc
Confidence 00 0125789998764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.23 Score=44.29 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHHHHHHh-hccCCCEEEEEcCCC--CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDK-MVTKSCHVLDIGAGT--GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~-~~~~~~~VLDiG~Gt--G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
+|....+. .+.++.+||-.|+|+ |.+++.+|++.+ .+|++++.+++-.+.+++ .|-. .+
T Consensus 16 A~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G-----------a~Vi~~~~s~~k~~~~~~----lGa~---~v 77 (179)
T d1qora2 16 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG-----------AKLIGTVGTAQKAQSALK----AGAW---QV 77 (179)
T ss_dssp HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT-----------CEEEEEESSHHHHHHHHH----HTCS---EE
T ss_pred HHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhC-----------CeEeecccchHHHHHHHh----cCCe---EE
Confidence 34333333 367899999997765 567777777765 699999999988887764 3543 23
Q ss_pred Eeccccccccc--c-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 132 INKRSDELEVG--V-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 132 i~~~~~~l~~~--~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
+..+-.++... . .-.+.+|+++-. .+ + +.+... -..++++|+++
T Consensus 78 i~~~~~d~~~~v~~~t~g~g~d~v~d~-~g----~----~~~~~~-~~~l~~~G~~v 124 (179)
T d1qora2 78 INYREEDLVERLKEITGGKKVRVVYDS-VG----R----DTWERS-LDCLQRRGLMV 124 (179)
T ss_dssp EETTTSCHHHHHHHHTTTCCEEEEEEC-SC----G----GGHHHH-HHTEEEEEEEE
T ss_pred EECCCCCHHHHHHHHhCCCCeEEEEeC-cc----H----HHHHHH-HHHHhcCCeee
Confidence 33333332100 0 012568987742 22 1 122333 34788888764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=87.15 E-value=0.61 Score=40.98 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCC
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLP 436 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~ 436 (694)
+|+ |+++. ...+|..|+++|+| |+++...||+-||+.| +++.
T Consensus 19 ay~-al~~~-~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~ 62 (168)
T d1uufa2 19 TYS-PLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTT 62 (168)
T ss_dssp HHH-HHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred HHH-HHHHh-CCCCCCEEEEeccchHHHHHHHHhhcccccch-hhcc
Confidence 454 66543 34578899999999 8888888887557655 5655
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.44 E-value=1 Score=39.66 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCCc----hHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeeccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDSV----FLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGK 467 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~Gg----iLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~ 467 (694)
.|.++|++.....+++.||.+|+|| ++ ..+++.| + +|+-+..+ .+.+.++++..-. . ..++.+.-
T Consensus 4 Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~-~al~~~g-~-~i~I~nRt-~~ka~~l~~~~~~---~--~~~~~~~~-- 72 (170)
T d1nyta1 4 GLLSDLERLSFIRPGLRILLIGAGGASRGVL-LPLLSLD-C-AVTITNRT-VSRAEELAKLFAH---T--GSIQALSM-- 72 (170)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCSHHHHHHH-HHHHHTT-C-EEEEECSS-HHHHHHHHHHTGG---G--SSEEECCS--
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHH-HHhcccc-e-EEEeccch-HHHHHHHHHHHhh---c--cccccccc--
Confidence 4777888776667889999999993 33 3345665 6 47766663 2333333332221 1 23444432
Q ss_pred ccccccccCCccccEEEcc
Q 044245 468 KCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 468 ~~~~~~~l~~~~vDvivsE 486 (694)
+++...+.|+||.-
T Consensus 73 -----~~~~~~~~dliIN~ 86 (170)
T d1nyta1 73 -----DELEGHEFDLIINA 86 (170)
T ss_dssp -----GGGTTCCCSEEEEC
T ss_pred -----ccccccccceeecc
Confidence 12223568999975
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.31 Score=47.99 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=51.5
Q ss_pred CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC-
Q 044245 68 CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID- 146 (694)
Q Consensus 68 ~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~- 146 (694)
.+|+|+.||.|.+++-+.++|-. ..-|.|+|+++.+++..+.|. + ...++.+|+.++... +++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~---------~~~~~a~E~~~~a~~~~~~n~-----~-~~~~~~~di~~~~~~-~~~~ 66 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIP---------AQVVAAIDVNTVANEVYKYNF-----P-HTQLLAKTIEGITLE-EFDR 66 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCS---------EEEEEEECCCHHHHHHHHHHC-----T-TSCEECSCGGGCCHH-HHHH
T ss_pred CEEEEcCcCccHHHHHHHHcCCC---------CeEEEEEECCHHHHHHHHHHC-----C-CCCcccCchhhCCHh-HcCC
Confidence 57999999999999888788740 123789999998888776542 2 345677888776532 122
Q ss_pred CCccEEEEcc
Q 044245 147 SRADILVSEI 156 (694)
Q Consensus 147 ~~~DlIvse~ 156 (694)
..+|+++.-+
T Consensus 67 ~~~Dll~ggp 76 (343)
T d1g55a_ 67 LSFDMILMSP 76 (343)
T ss_dssp HCCSEEEECC
T ss_pred CCccEEEeec
Confidence 3689998754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=85.37 E-value=0.43 Score=42.30 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCCCcEEEecC-C--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADD-S--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~-G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
+|+ ++.+ ....+++.||+.|. | |.+.+..||+-|+ +|+++.. ++.-.+. +++.|.+ .+.......+
T Consensus 16 A~~-al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~--~~~~~~~----~~~lGa~--~~i~~~~~~~ 84 (171)
T d1iz0a2 16 AYL-ALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAAS--RPEKLAL----PLALGAE--EAATYAEVPE 84 (171)
T ss_dssp HHH-HHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEES--SGGGSHH----HHHTTCS--EEEEGGGHHH
T ss_pred HHH-HHHH-hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccc--ccccccc----ccccccc--eeeehhhhhh
Confidence 554 5655 34567889999996 5 6677777777557 6888766 3322233 3455664 2222222112
Q ss_pred cccccccCCccccEEEc
Q 044245 469 CLTMDDTQQKKVDLLIG 485 (694)
Q Consensus 469 ~~~~~~l~~~~vDvivs 485 (694)
+++ .++.+|+|+-
T Consensus 85 ~~~----~~~g~D~v~d 97 (171)
T d1iz0a2 85 RAK----AWGGLDLVLE 97 (171)
T ss_dssp HHH----HTTSEEEEEE
T ss_pred hhh----cccccccccc
Confidence 222 2467999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.26 E-value=1.2 Score=38.75 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=49.6
Q ss_pred EEEEEcCCC--CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccccCCC
Q 044245 69 HVLDIGAGT--GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVGVDID 146 (694)
Q Consensus 69 ~VLDiG~Gt--G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~~~l~ 146 (694)
+|+-||||. |.++..+.+.|. ..+|+++|.|++.++.|++ .+.-+.+ ..+..... .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~----------~~~I~~~D~~~~~~~~a~~----~~~~~~~---~~~~~~~~-----~ 60 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF----------KGKIYGYDINPESISKAVD----LGIIDEG---TTSIAKVE-----D 60 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC----------CSEEEEECSCHHHHHHHHH----TTSCSEE---ESCGGGGG-----G
T ss_pred EEEEEccCHHHHHHHHHHHhcCC----------CeEEEEEECChHHHHHHHH----hhcchhh---hhhhhhhh-----c
Confidence 578898873 244555555543 3589999999998887765 3432211 11222211 1
Q ss_pred CCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEE
Q 044245 147 SRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTV 185 (694)
Q Consensus 147 ~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~ii 185 (694)
...|+|+..... .....++..+..+++++.+++
T Consensus 61 ~~~dlIila~p~------~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 61 FSPDFVMLSSPV------RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp TCCSEEEECSCH------HHHHHHHHHHHHHSCTTCEEE
T ss_pred cccccccccCCc------hhhhhhhhhhhcccccccccc
Confidence 368988753211 123344455566777765543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=84.82 E-value=0.6 Score=43.90 Aligned_cols=99 Identities=12% Similarity=-0.016 Sum_probs=54.4
Q ss_pred CCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCC----cChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 404 RVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPG----LGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 404 ~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~----~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
.++..|+|+||| |=.|-.||+.....+|.++.-. ..++ ....++. +.++...+. ..-.++++
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~-------~~~~~~~--ni~~~~~~~----dv~~l~~~ 131 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI-------PMSTYGW--NLVRLQSGV----DVFFIPPE 131 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-------CCCSTTG--GGEEEECSC----CTTTSCCC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc-------ccccccc--ccccchhhh----hHHhcCCC
Confidence 355679999999 8888888865323456554331 1121 1233443 455655432 22345678
Q ss_pred cccEEEccccccCCccccCcch--hhHHHHHhhcccccCCCce
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQN--LRFWKERSKLDPVLSKEVI 519 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~~--l~f~~~r~~~~~~L~p~g~ 519 (694)
++|+|||.. + |+--.|++ .+-...-+...+||+|||.
T Consensus 132 ~~D~vlcDm---~-ess~~~~vd~~Rtl~vLela~~wLk~gg~ 170 (257)
T d2p41a1 132 RCDTLLCDI---G-ESSPNPTVEAGRTLRVLNLVENWLSNNTQ 170 (257)
T ss_dssp CCSEEEECC---C-CCCSSHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred cCCEEEeeC---C-CCCCCchhhhhhHHHHHHHHHHHcccCCE
Confidence 999999984 1 23222232 1111222223569999984
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.74 E-value=1.3 Score=38.36 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC--chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS--VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G--giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
+|+ |+.+.. ..++.+||+.|+| |++...+|++.|+ +|++++. ++.-.+ .++..|..
T Consensus 16 a~~-al~~~~-~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~--~~~r~~----~~k~~Ga~ 73 (168)
T d1rjwa2 16 TYK-ALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI--GDEKLE----LAKELGAD 73 (168)
T ss_dssp HHH-HHHHHT-CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS--CHHHHH----HHHHTTCS
T ss_pred HHH-HHHHhC-CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCC--CHHHhh----hhhhcCcc
Confidence 455 455443 3478899999999 8888888887656 6999988 443222 45666764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.70 E-value=0.28 Score=43.77 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHhh-ccCCCEEEEEcC-C-CCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 044245 55 AYRLAIDKM-VTKSCHVLDIGA-G-TGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKV 131 (694)
Q Consensus 55 ~y~~ai~~~-~~~~~~VLDiG~-G-tG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~v 131 (694)
+|....+.. +.+|.+||-.|+ | .|.+++-+|+... .+|+++..+++-.+.++ ..|.. . +
T Consensus 13 A~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g-----------~~vi~~~~~~~~~~~l~----~~Ga~-~--v 74 (183)
T d1pqwa_ 13 AWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG-----------ARIYTTAGSDAKREMLS----RLGVE-Y--V 74 (183)
T ss_dssp HHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-----------CEEEEEESSHHHHHHHH----TTCCS-E--E
T ss_pred HHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcccc-----------ccceeeecccccccccc----ccccc-c--c
Confidence 344433442 678899999874 2 3566666666654 58888877776666555 35653 2 2
Q ss_pred Eeccccccccc--c-CCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEc
Q 044245 132 INKRSDELEVG--V-DIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVP 186 (694)
Q Consensus 132 i~~~~~~l~~~--~-~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP 186 (694)
+..+-.++... . .-.+.+|+++.. .+ -+.+..++ +.|+++|+++-
T Consensus 75 i~~~~~~~~~~v~~~t~~~g~d~v~d~-~g--------~~~~~~~~-~~l~~~G~~v~ 122 (183)
T d1pqwa_ 75 GDSRSVDFADEILELTDGYGVDVVLNS-LA--------GEAIQRGV-QILAPGGRFIE 122 (183)
T ss_dssp EETTCSTHHHHHHHHTTTCCEEEEEEC-CC--------THHHHHHH-HTEEEEEEEEE
T ss_pred ccCCccCHHHHHHHHhCCCCEEEEEec-cc--------chHHHHHH-HHhcCCCEEEE
Confidence 33222222100 0 012579999852 22 12333344 58999998774
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.31 E-value=0.64 Score=40.97 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHHHHh-hccCCCEEEEEcCCCC-HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHH
Q 044245 53 NRAYRLAIDK-MVTKSCHVLDIGAGTG-LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKK 118 (694)
Q Consensus 53 ~~~y~~ai~~-~~~~~~~VLDiG~GtG-~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~ 118 (694)
...|...++. .++++.+||-+|+|.+ .+++.++++.. ..+|+++|.+++-++.|++
T Consensus 14 ~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g----------~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 14 STGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG----------AKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT----------CSEEEEECSCGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHh----------hchheeecchHHHHHHHHH
Confidence 3455555555 3888999999999974 44444444433 3689999999988877764
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.20 E-value=0.86 Score=43.90 Aligned_cols=120 Identities=8% Similarity=-0.122 Sum_probs=68.6
Q ss_pred HhcCCCCCcEEEecCC-chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccccccccCCc
Q 044245 400 ALQGRVQPLCVVADDS-VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCLTMDDTQQK 478 (694)
Q Consensus 400 ~~~~~~~~~vldig~G-giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~~~~~l~~~ 478 (694)
.....++..|||+-+| |-=++..|..+.-.+|+|+|.+.... +.+++.+++.|++ . +.+......... ...++
T Consensus 97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~--~~l~~~~~r~g~~-~-~~~~~~~~~~~~--~~~~~ 170 (284)
T d1sqga2 97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL--SRVYDNLKRLGMK-A-TVKQGDGRYPSQ--WCGEQ 170 (284)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH--HHHHHHHHHTTCC-C-EEEECCTTCTHH--HHTTC
T ss_pred ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh--hhHhhhhhccccc-c-eeeeccccccch--hcccc
Confidence 3444578899999988 53333334444346899999864443 3457788888986 4 444332211111 11246
Q ss_pred cccEEEccccccCCccccCcc--hhh--------------HHHHHhhcccccCCCceEEcceEEE
Q 044245 479 KVDLLIGEPYYFGNDGMLPWQ--NLR--------------FWKERSKLDPVLSKEVIIMPFKGIL 527 (694)
Q Consensus 479 ~vDvivsE~~~~~~e~~l~w~--~l~--------------f~~~r~~~~~~L~p~g~i~P~~a~l 527 (694)
++|.|+..+=+++ +|++.-. ... .-.++.+ -++|+|||.++=+.|++
T Consensus 171 ~fd~IL~DaPCSg-~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a-~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 171 QFDRILLDAPCSA-TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAI-WPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CEEEEEEECCCCC-GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHH-GGGEEEEEEEEEEESCC
T ss_pred cccEEEEeccccc-cCccccccchhhccccchhhHHHHHHHHHHHHH-HHhcCCCceEEEeeecC
Confidence 8999999854554 4665311 110 1111112 24799999888666653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=83.74 E-value=0.77 Score=40.25 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=60.8
Q ss_pred HHHh-hccCCCEEEEEcCCC-CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccc
Q 044245 59 AIDK-MVTKSCHVLDIGAGT-GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRS 136 (694)
Q Consensus 59 ai~~-~~~~~~~VLDiG~Gt-G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~ 136 (694)
++++ -+.+|.+||-+|+|. |++++.++++.. .++++++.+++-.+.+++ .|.. .++...-
T Consensus 22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G-----------a~~i~~~~~~~~~~~a~~----lGad---~~i~~~~ 83 (168)
T d1uufa2 22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG-----------AHVVAFTTSEAKREAAKA----LGAD---EVVNSRN 83 (168)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-----------CEEEEEESSGGGHHHHHH----HTCS---EEEETTC
T ss_pred HHHHhCCCCCCEEEEeccchHHHHHHHHhhccc-----------ccchhhccchhHHHHHhc----cCCc---EEEECch
Confidence 4444 378899999999984 777777787754 477889988887766654 4543 2233222
Q ss_pred cccccccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 137 DELEVGVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 137 ~~l~~~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+.. ....+.+|+++-. .+ .+..+. ..+ ++++++|+++.-
T Consensus 84 ~~~~--~~~~~~~D~vid~-~g----~~~~~~---~~~-~~l~~~G~iv~~ 123 (168)
T d1uufa2 84 ADEM--AAHLKSFDFILNT-VA----APHNLD---DFT-TLLKRDGTMTLV 123 (168)
T ss_dssp HHHH--HTTTTCEEEEEEC-CS----SCCCHH---HHH-TTEEEEEEEEEC
T ss_pred hhHH--HHhcCCCceeeee-ee----cchhHH---HHH-HHHhcCCEEEEe
Confidence 2211 1122579988742 22 122222 233 489999988754
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=83.16 E-value=2.2 Score=41.23 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhccCC-CEEEEEcCCCCHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCC--
Q 044245 50 SYRNRAYRLAIDKMVTKS-CHVLDIGAGTGLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMG-- 126 (694)
Q Consensus 50 ~~r~~~y~~ai~~~~~~~-~~VLDiG~GtG~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~-- 126 (694)
..|+..+.+.+.+.+..+ ..|+.+|||-=.-...+.. . +..+++-+|. |++++.-++.++.++..
T Consensus 72 ~~Rtr~~D~~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~--~---------~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~ 139 (297)
T d2uyoa1 72 AVRTNFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDW--P---------TGTTVYEIDQ-PKVLAYKSTTLAEHGVTPT 139 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCC--C---------TTCEEEEEEC-HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEeCcccCChhhhcCC--C---------cCceEEEcCC-hHHHHHHHHHHHhcCCCCC
Confidence 356666667777766554 4566699997555443311 1 2358999996 88888888888877653
Q ss_pred CcEEEEeccccccccccCC------CCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcC
Q 044245 127 RNIKVINKRSDELEVGVDI------DSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPC 187 (694)
Q Consensus 127 ~~I~vi~~~~~~l~~~~~l------~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~ 187 (694)
.+..++..|.++- ....+ +.+.-++++|-+-.++ .+.....++..+..+..||..++-+
T Consensus 140 ~~~~~v~~Dl~~~-~~~~L~~~g~d~~~ptl~i~EGvl~YL-~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 140 ADRREVPIDLRQD-WPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp SEEEEEECCTTSC-HHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred ceEEEecccccch-HHHHHHhcCCCCCCCEEEEEccccccC-CHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4567777776541 10111 2345588888655444 3445666777777778888887654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=83.10 E-value=0.9 Score=44.54 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHhcCCCCCcEEEecCC-chHHHHHH-HcC----CCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccccc
Q 044245 397 MRNALQGRVQPLCVVADDS-VFLTICVA-RLS----KTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKKCL 470 (694)
Q Consensus 397 i~~~~~~~~~~~vldig~G-giLsl~aA-~~g----~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~~~ 470 (694)
+.......++..|+|.+|| |-+.+.++ +.+ ...+++++|- .+.+.++|+..+..++. .+.+.++..-
T Consensus 109 ~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di--~~~~~~~a~~~~~~~~~---~~~~~~~d~~-- 181 (328)
T d2f8la1 109 LEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDV--DDLLISLALVGADLQRQ---KMTLLHQDGL-- 181 (328)
T ss_dssp HHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEES--CHHHHHHHHHHHHHHTC---CCEEEESCTT--
T ss_pred HHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecc--cHHHHHHHHHHHHHhhh---hhhhhccccc--
Confidence 3444444455689999999 64433333 221 1337899998 67666777766665554 3455555322
Q ss_pred cccccCCccccEEEccc
Q 044245 471 TMDDTQQKKVDLLIGEP 487 (694)
Q Consensus 471 ~~~~l~~~~vDvivsE~ 487 (694)
. ....++.|+||+.|
T Consensus 182 ~--~~~~~~fD~vi~NP 196 (328)
T d2f8la1 182 A--NLLVDPVDVVISDL 196 (328)
T ss_dssp S--CCCCCCEEEEEEEC
T ss_pred c--ccccccccccccCC
Confidence 1 12357899999995
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.98 E-value=1 Score=39.99 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=55.3
Q ss_pred ccCCCEEEEEcCCC--CHHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecccccccc
Q 044245 64 VTKSCHVLDIGAGT--GLLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEV 141 (694)
Q Consensus 64 ~~~~~~VLDiG~Gt--G~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~ 141 (694)
..++.+||--|++. |..++.++++.. .+|+++-.+++-.+.+++ .|....|. ......+...
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~G-----------a~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~ 92 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRG-----------YTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIR 92 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTT-----------CCEEEEESCTTCHHHHHH----TTCSEEEE-CC--------
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcC-----------CceEEecCchHHHHHHHh----cccceeee-cchhHHHHHH
Confidence 45578999998654 466777777654 589999888877777764 35432121 1111111100
Q ss_pred ccCCCCCccEEEEccccccccCCChHHHHHHHHHhccCCCCeEEcCc
Q 044245 142 GVDIDSRADILVSEILDSELLGEGLIPTLQHAHDRLLVENPLTVPCR 188 (694)
Q Consensus 142 ~~~l~~~~DlIvse~~~~~l~~e~~l~~l~~~~~~~L~p~G~iiP~~ 188 (694)
.--++.+|+|+- .++ ...+ ...+ +.|+++|+++...
T Consensus 93 -~~~~~gvD~vid-~vg-----g~~~---~~~l-~~l~~~Griv~~G 128 (176)
T d1xa0a2 93 -PLDKQRWAAAVD-PVG-----GRTL---ATVL-SRMRYGGAVAVSG 128 (176)
T ss_dssp --CCSCCEEEEEE-CST-----TTTH---HHHH-HTEEEEEEEEECS
T ss_pred -HhhccCcCEEEE-cCC-----chhH---HHHH-HHhCCCceEEEee
Confidence 112368998874 333 2222 2233 4899999987443
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=82.45 E-value=3.4 Score=38.42 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=48.8
Q ss_pred CChhHHHHHHHHHHHH-------h----cCCCC-CcEEEecCC-chHHHHHHHc-CCCceEEEcCCCcChhHHHHHHHHh
Q 044245 385 GDGEWRLSMVMAMRNA-------L----QGRVQ-PLCVVADDS-VFLTICVARL-SKTAHVLSLLPGLGDKGAQYLRTVA 450 (694)
Q Consensus 385 ~D~~r~~~y~~Ai~~~-------~----~~~~~-~~vldig~G-giLsl~aA~~-g~a~~V~ave~~~~~~~~~~~~~i~ 450 (694)
.|.++.+.|.+|.... + ..+.+ +.|||||+| |.++...+++ - .-+++-.+- -+ ++
T Consensus 48 ~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl--p~--------vi 116 (244)
T d1fp2a2 48 KNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR--PQ--------VV 116 (244)
T ss_dssp HCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC--HH--------HH
T ss_pred hCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC--HH--------HH
Confidence 3666666666654221 1 11222 679999999 8776655554 3 246766665 22 23
Q ss_pred ccCCcccccEEEeecccccccccccCCccccEEEcc
Q 044245 451 DPNCFSIDRVEILQKGKKCLTMDDTQQKKVDLLIGE 486 (694)
Q Consensus 451 ~~N~l~~~~i~vi~~~~~~~~~~~l~~~~vDvivsE 486 (694)
+.-+.. +||+++.++.. + .. ...|+++.-
T Consensus 117 ~~~~~~-~rv~~~~gD~f--~--~~--p~aD~~~l~ 145 (244)
T d1fp2a2 117 ENLSGS-NNLTYVGGDMF--T--SI--PNADAVLLK 145 (244)
T ss_dssp TTCCCB-TTEEEEECCTT--T--CC--CCCSEEEEE
T ss_pred HhCccc-CceEEEecCcc--c--CC--CCCcEEEEE
Confidence 344455 89999998643 2 12 346887654
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=81.54 E-value=3.6 Score=38.00 Aligned_cols=93 Identities=10% Similarity=-0.003 Sum_probs=52.8
Q ss_pred hhcCChhHHHHHHHHHHHHhcCCCCCcEEEecCC-c-hHHHHH---HHcCCCceEEEcCCCcChhHHHHHHHHhccCCcc
Q 044245 382 AIYGDGEWRLSMVMAMRNALQGRVQPLCVVADDS-V-FLTICV---ARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFS 456 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~~~~~~vldig~G-g-iLsl~a---A~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~ 456 (694)
.+++...=...|+..|.+.. .++||.+|++ | -+.+|| ...+...+|++++-..+... ...+..
T Consensus 61 p~~k~p~d~~~~~eli~~~K----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-------~~~~~~- 128 (232)
T d2bm8a1 61 RMLKDPDTQAVYHDMLWELR----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-------IPASDM- 128 (232)
T ss_dssp ECCSCHHHHHHHHHHHHHHC----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-------CCGGGC-
T ss_pred ecccCHHHHHHHHHHHHHhC----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-------hhhccc-
Confidence 35555555567777777643 4689999986 3 333333 22343579999886322110 112222
Q ss_pred cccEEEeecccccccc-cccCCccccEEEccc
Q 044245 457 IDRVEILQKGKKCLTM-DDTQQKKVDLLIGEP 487 (694)
Q Consensus 457 ~~~i~vi~~~~~~~~~-~~l~~~~vDvivsE~ 487 (694)
++|+++++.+.+.+. ..+.....|.|+-+.
T Consensus 129 -~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 129 -ENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp -TTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred -cceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 689999998765443 223223356665553
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.34 E-value=0.55 Score=41.88 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCCCCcEEEecCC---chHHHHHHHcCCCceEEEcCCCcChhHHHHHHHHhccCCcccccEEEeecccc
Q 044245 392 SMVMAMRNALQGRVQPLCVVADDS---VFLTICVARLSKTAHVLSLLPGLGDKGAQYLRTVADPNCFSIDRVEILQKGKK 468 (694)
Q Consensus 392 ~y~~Ai~~~~~~~~~~~vldig~G---giLsl~aA~~g~a~~V~ave~~~~~~~~~~~~~i~~~N~l~~~~i~vi~~~~~ 468 (694)
+|. |+.+.....+|..||+.|+| |......||..|| +||++.. ++... +.++..|.. . +|....+
T Consensus 17 A~~-al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~--~~~~~----~~~~~~Ga~--~--vi~~~~~ 84 (182)
T d1v3va2 17 AYF-GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAG--SDEKI----AYLKQIGFD--A--AFNYKTV 84 (182)
T ss_dssp HHH-HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES--SHHHH----HHHHHTTCS--E--EEETTSC
T ss_pred HHH-HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCC--CHHHH----HHHHhhhhh--h--hcccccc
Confidence 444 34444444578899999986 4555555565556 8998866 33322 234556653 2 2332222
Q ss_pred ccccc---ccCCccccEEEc
Q 044245 469 CLTMD---DTQQKKVDLLIG 485 (694)
Q Consensus 469 ~~~~~---~l~~~~vDvivs 485 (694)
+.... ...++.+|+++=
T Consensus 85 ~~~~~~~~~~~~~Gvd~v~D 104 (182)
T d1v3va2 85 NSLEEALKKASPDGYDCYFD 104 (182)
T ss_dssp SCHHHHHHHHCTTCEEEEEE
T ss_pred cHHHHHHHHhhcCCCceeEE
Confidence 22111 123567898764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=81.02 E-value=3.2 Score=41.64 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=52.5
Q ss_pred hhcCChhHHHHHHHHHHHHhcC------------------------CCCCcEEEecCC-chHHH-HHHHc-CCCceEEEc
Q 044245 382 AIYGDGEWRLSMVMAMRNALQG------------------------RVQPLCVVADDS-VFLTI-CVARL-SKTAHVLSL 434 (694)
Q Consensus 382 ~ml~D~~r~~~y~~Ai~~~~~~------------------------~~~~~vldig~G-giLsl-~aA~~-g~a~~V~av 434 (694)
..|.|..-.+.|.+.|.-.+.. .++.+++|+|+- |.-+. |+... +.-++|+|+
T Consensus 165 ~~L~D~~S~~~~~~~l~~rl~~d~~~~~~~~~~~~~~YF~~~i~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aF 244 (395)
T d2py6a1 165 QRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMI 244 (395)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHCCTHHHHHHCCCGGGTTTSSSSCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEE
T ss_pred HHccCHhhHHHHHHHHHHHhcCCHHHHhcccCcHHHhhhhhcccCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEE
Confidence 4566777666666655433221 244689999986 64443 33333 224699999
Q ss_pred CCCcChhHHHHHHHHhccCCcc--cccEEEeec
Q 044245 435 LPGLGDKGAQYLRTVADPNCFS--IDRVEILQK 465 (694)
Q Consensus 435 e~~~~~~~~~~~~~i~~~N~l~--~~~i~vi~~ 465 (694)
|| ++...+.+++.++.|++. ..+|.++..
T Consensus 245 EP--~p~n~~~LkkNi~~n~~~n~~~~I~~~~~ 275 (395)
T d2py6a1 245 EP--DRINLQTLQNVLRRYTDTNFASRITVHGC 275 (395)
T ss_dssp CC--CHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred eC--CHHHHHHHHHHHHhcccccccceEEEEEE
Confidence 99 787777888888887754 146777664
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.37 E-value=0.84 Score=41.02 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCC---HHHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTG---LLSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG---~lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
++++||-.|++.| .++..+++.|+ +|+.++.+++.++.+.+.+..+. ++.++..|..+...-
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~------------~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~ 86 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA------------EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASR 86 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC------------EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc------------chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHH
Confidence 5899999997776 33555556664 89999999888877766665543 233333443332210
Q ss_pred cCCCCCccEEEEc
Q 044245 143 VDIDSRADILVSE 155 (694)
Q Consensus 143 ~~l~~~~DlIvse 155 (694)
...-+++|++|.+
T Consensus 87 ~~~~~~iDilin~ 99 (191)
T d1luaa1 87 AEAVKGAHFVFTA 99 (191)
T ss_dssp HHHTTTCSEEEEC
T ss_pred HHHhcCcCeeeec
Confidence 1122578999875
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=80.20 E-value=2.2 Score=40.08 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCCH---HHHHHHHHcCCCCCCccCCCccEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEeccccccccc
Q 044245 66 KSCHVLDIGAGTGL---LSMMAARAMGSSDSTTSLNTKGMVTACESYLPMVKLMKKVLHVNGMGRNIKVINKRSDELEVG 142 (694)
Q Consensus 66 ~~~~VLDiG~GtG~---lsl~aa~~g~~~~~~~~~~~~~~V~avE~s~~~~~~A~~~~~~ngl~~~I~vi~~~~~~l~~~ 142 (694)
+|+++|--|+++|+ ++..+++.|+ +|+.++.+++.++.+.+.+...+...++..+..|..+..--
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga------------~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v 70 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA------------KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQV 70 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC------------EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC------------EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHH
Confidence 57899999988874 4666677775 89999999998887777776666556888888887764310
Q ss_pred c-------CCCCCccEEEEc
Q 044245 143 V-------DIDSRADILVSE 155 (694)
Q Consensus 143 ~-------~l~~~~DlIvse 155 (694)
. ..-++.|++|.+
T Consensus 71 ~~~~~~~~~~~G~iDiLVnn 90 (258)
T d1iy8a_ 71 EAYVTATTERFGRIDGFFNN 90 (258)
T ss_dssp HHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHHHhCCCCEEEEC
Confidence 0 012578999876
|