Citrus Sinensis ID: 044251
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGR7 | 723 | Pentatricopeptide repeat- | yes | no | 0.848 | 0.804 | 0.679 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.568 | 0.493 | 0.272 | 4e-44 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.586 | 0.538 | 0.280 | 7e-44 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.612 | 0.566 | 0.271 | 2e-42 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.593 | 0.558 | 0.266 | 6e-42 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.622 | 0.602 | 0.263 | 1e-40 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.568 | 0.400 | 0.258 | 3e-40 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.491 | 0.555 | 0.292 | 3e-40 | |
| Q9FMQ1 | 816 | Pentatricopeptide repeat- | no | no | 0.565 | 0.475 | 0.264 | 6e-40 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.619 | 0.518 | 0.256 | 2e-39 |
| >sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/614 (67%), Positives = 487/614 (79%), Gaps = 32/614 (5%)
Query: 92 DPLLKFFKSQT----PTQDPPALGKLSLQKNRRSSWHLSPHVNSP--------------- 132
DP+LKFFKS+T T DP K SLQKNRR+SWHL+P P
Sbjct: 98 DPILKFFKSRTLTSESTADPARESKFSLQKNRRTSWHLAPDFADPETEIESKPEESVFVT 157
Query: 133 NQS--------ES----DINDISLEDEAKQQMGSLPDGIGR-VSKRECVQLLELMANDGL 179
NQ ES +I +++ + Q +G + G R VS ECV+ L +M G
Sbjct: 158 NQQTLGVHIPFESGVAREILELAKNLKENQTLGEMLSGFERRVSDTECVEALVMMGESGF 217
Query: 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239
+ CLYFYEWM LQEPSL SPRACSVLF +LGR RM D +++L NLP +EFRD +YN
Sbjct: 218 VKSCLYFYEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYN 277
Query: 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299
AAISGL RYDDAW+ YEAM+ NV PD+VTC+I+IT +RK GRSAKE WE FEKM+
Sbjct: 278 AAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSE 337
Query: 300 KGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE 359
KGVK SQ+V G L+KSFCDEGLK EAL+IQ EMEKKGI SN IVYNTL++AY KSN +EE
Sbjct: 338 KGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEE 397
Query: 360 AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLIS 419
EGLF EM+ KGLKP++AT+NILMDAY+RRMQP+IVE LL E++D+GLEPN KSYTCLIS
Sbjct: 398 VEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLIS 457
Query: 420 AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479
AYGR +KMSDMAADAFLRMK+VG+KP+SHSYTALIHAYSV GWHEKAYA+FE M +E IK
Sbjct: 458 AYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIK 517
Query: 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539
PS+ETYT++LDAFRRSGDTG +M+IWKLM+ EK++GTR+T+N LLDGFAKQG Y+EARDV
Sbjct: 518 PSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDV 577
Query: 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599
VSEF K+GLQP++MTYNMLMNAY RGGQ +KLPQLLKEMA LN+KPDS+TYSTMIYAFVR
Sbjct: 578 VSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
Query: 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVK 659
VRDFKRAFFYHK MVKSGQVPD +SYEKLR+IL+ K TKNR+DK+AILGIINSK G VK
Sbjct: 638 VRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTAILGIINSKFGRVK 697
Query: 660 AKKKGKKDEFWKYK 673
AK KGKKDEFWKYK
Sbjct: 698 AKTKGKKDEFWKYK 711
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 190/392 (48%), Gaps = 2/392 (0%)
Query: 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEF 293
D Y I+G F G D A+ Y M + PD VT + +I A+ K ++ +A E
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK-AQAMDKAMEV 253
Query: 294 FEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353
M + GV +++ +C G EA+ +M G+ + + Y+ L++ CK
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 354 SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKS 413
+ + EA +F M +GLKP T+ L+ Y+ + + LL + G+ P+
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473
++ LI AY + K+ D A F +M++ G+ P + +Y A+I G E A FE M
Sbjct: 374 FSILICAYAKQGKV-DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 474 LREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533
+ E + P Y +L+ ++ M+ + + FN ++D K+G+
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593
+E+ + +IG++P ++TYN L+N Y G+ + +LL M ++ +KP++VTYST+
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 594 IYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625
I + ++ + A K+M SG PD+ +Y
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITY 584
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 192/410 (46%), Gaps = 8/410 (1%)
Query: 222 LFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281
+FK + +S+ + YN I G + G D A ++ ME P+ VT + +I
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251
Query: 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA 341
K R + ++ M KG++ + ++ C EG E + EM ++G +
Sbjct: 252 K-LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Query: 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401
+ YNTLI YCK +A + EM GL P+ T+ L+ + + + L +
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461
++ GL PN ++YT L+ + + M++ A M G P+ +Y ALI+ + V G
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNE-AYRVLREMNDNGFSPSVVTYNALINGHCVTG 429
Query: 462 WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521
E A A E+M + + P + +Y+ +L F RS D +++ + M+ + ++ +T++
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Query: 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581
L+ GF +Q + EA D+ E ++GL P TY L+NAY G K QL EM
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Query: 582 NIKPDSVTYSTMIYAF---VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628
+ PD VTYS +I R R+ KR ++ VP +Y L
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLL---KLFYEESVPSDVTYHTL 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 201/427 (47%), Gaps = 7/427 (1%)
Query: 220 MVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279
+++F+ P+ + YN I + GR +A ME PD ++ S ++
Sbjct: 231 IIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNG 290
Query: 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS 339
+ G K W+ E M RKG+K + + G+++ C EA EM ++GI
Sbjct: 291 YCRFGELDK-VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399
+ +VY TLI+ +CK + A F EM ++ + P T+ ++ + + KL
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459
E+ GLEP++ ++T LI+ Y + M D A M + G P +YT LI
Sbjct: 410 HEMFCKGLEPDSVTFTELINGYCKAGHMKD-AFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468
Query: 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVT 519
G + A M + ++P+I TY ++++ +SG+ +K+ + + VT
Sbjct: 469 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT 528
Query: 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579
+ L+D + K G+ +A++++ E GLQPT++T+N+LMN + G +LL M
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 588
Query: 580 TLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATK 639
I P++ T+++++ + + K A +K M G PD K+YE L VK K
Sbjct: 589 AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENL-----VKGHCK 643
Query: 640 NRRDKSA 646
R K A
Sbjct: 644 ARNMKEA 650
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/495 (26%), Positives = 210/495 (42%), Gaps = 88/495 (17%)
Query: 221 VLFKNLPQSKEFRDAH----------------VYNAAISGLFWCGRYDDAWKAYEAMEAN 264
+L + Q+++ R+AH NA I L G + AW Y+ + +
Sbjct: 170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229
Query: 265 NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324
V + T +IM+ A+ K+G+ K F ++ KGV L+ ++ +GL E
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEK-VGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 325 ALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILM- 383
A + M KG YNT+IN CK + E A+ +F EM GL P S T+ L+
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348
Query: 384 ----------------DAYSRRMQPEIV---------------EKLLL---ELQDMGLEP 409
D SR + P++V +K L+ +++ GL P
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408
Query: 410 NAKSYTCLISAYGRP----------------------------------RKMSDMAADAF 435
+ YT LI Y R RKM A F
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 468
Query: 436 LRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495
M + P S++ T LI + G + A F+ M + I+ + TY LLD F +
Sbjct: 469 NEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKV 528
Query: 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTY 555
GD +IW M+S+++ T ++++IL++ +G EA V E ++PT+M
Sbjct: 529 GDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMIC 588
Query: 556 NMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQM-- 613
N ++ Y R G S L++M + PD ++Y+T+IY FVR + +AF K+M
Sbjct: 589 NSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEE 648
Query: 614 VKSGQVPDVKSYEKL 628
+ G VPDV +Y +
Sbjct: 649 EQGGLVPDVFTYNSI 663
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 219/466 (46%), Gaps = 39/466 (8%)
Query: 204 SVLFPVLGRARMGDDLMVL--FKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAM 261
S++ L R+ D +M+L +K + + K D + N I G G A +
Sbjct: 236 SLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMA 295
Query: 262 EANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321
+A + T +I+A+ +GR+ EA FE++ + G+K AL+K + G
Sbjct: 296 QATGLSAKTATLVSIISALADSGRTL-EAEALFEELRQSGIKPRTRAYNALLKGYVKTGP 354
Query: 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381
+A + EMEK+G+ + Y+ LI+AY + + E A + +EM+ ++P S F+
Sbjct: 355 LKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSR 414
Query: 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV 441
L+ + R + + ++L E++ +G++P+ + Y +I +G+ + D A F RM
Sbjct: 415 LLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCL-DHAMTTFDRMLSE 473
Query: 442 GIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMM 501
GI+P ++ LI + G H A FE M R P TY +++++ M
Sbjct: 474 GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDM 533
Query: 502 MKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561
++ M S+ + VT L+D + K G++ +A + + E +GL+P+ YN L+NA
Sbjct: 534 KRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINA 593
Query: 562 YGRGGQTSKL-------------PQLLKEMATLN----------------------IKPD 586
Y + G + + P LL + +N +KPD
Sbjct: 594 YAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPD 653
Query: 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632
VTY+T++ A +RV F++ +++M+ SG PD K+ LRS L
Sbjct: 654 VVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSAL 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 197/394 (50%), Gaps = 4/394 (1%)
Query: 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFE 295
++Y+ I + G + A ++ M A+ + P + +I + ++ ++ +E
Sbjct: 348 YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE-KNVRQGYELLV 406
Query: 296 KMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN 355
+M ++ + +S G ++K C G + A I EM G N ++Y TLI + +++
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT 415
+ +A + +EMK +G+ P +N L+ S+ + + L+E+ + GL+PNA +Y
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526
Query: 416 CLISAYGRPRKMSDMAADAFLR-MKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474
IS Y + + +AD +++ M+ G+ P T LI+ Y G +A +A+ +M+
Sbjct: 527 AFISGYIEASEFA--SADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 475 REEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYL 534
+ I +TYT L++ ++ +I++ M + + ++ +L++GF+K G
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQ 644
Query: 535 EARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594
+A + E + GL P ++ YNML+ + R G+ K +LL EM+ + P++VTY T+I
Sbjct: 645 KASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTII 704
Query: 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628
+ + D AF +M G VPD Y L
Sbjct: 705 DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 169/338 (50%), Gaps = 1/338 (0%)
Query: 291 WEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350
W F+ ++ G L+ V LM FC EG ++A + E+ K+ + + +NTLIN
Sbjct: 225 WGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLING 284
Query: 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN 410
YCK L+E L +M+ +P T++ L++A + + + L E+ GL PN
Sbjct: 285 YCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPN 344
Query: 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAF 470
+T LI + R ++ D+ +++ +M G++P Y L++ + G A
Sbjct: 345 DVIFTTLIHGHSRNGEI-DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIV 403
Query: 471 ENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530
+ M+R ++P TYT L+D F R GD ++I K M +E RV F+ L+ G K+
Sbjct: 404 DGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE 463
Query: 531 GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590
G+ ++A + E + G++P +TY M+M+A+ + G +LLKEM + P VTY
Sbjct: 464 GRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTY 523
Query: 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628
+ ++ ++ K A M+ G VPD +Y L
Sbjct: 524 NVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTL 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 189/423 (44%), Gaps = 35/423 (8%)
Query: 238 YNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297
+N + GLF G +DA + M+ PD T SI+ N + A+ A +E
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEK-AEAALGVYETA 345
Query: 298 NRKGVKLSQEVVGALMKSFCDEG-LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356
GVK++ L+ + C EG ++ I+ EM K +P N ++YNT+I+ YC+
Sbjct: 346 VDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVP-NEVIYNTMIDGYCRKGD 404
Query: 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTC 416
L A + M+ +G+KP +N L+ + + E EK + +++ G+ P+ ++Y
Sbjct: 405 LVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI 464
Query: 417 LISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476
LI YGR + D D M+ G P SY LI+ G +A +M
Sbjct: 465 LIGGYGRKYEF-DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDR 523
Query: 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536
+ P + Y L+D G + K M+ + +E VT+N L+DG + G+ EA
Sbjct: 524 GVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEA 583
Query: 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM------------------ 578
D++ E + GL+P + TYN L++ YG G + L +EM
Sbjct: 584 EDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISL 643
Query: 579 -------------ATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625
+++KPD + Y+ +++ + D ++AF KQM++ D +Y
Sbjct: 644 CTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTY 703
Query: 626 EKL 628
L
Sbjct: 704 NSL 706
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 211/445 (47%), Gaps = 20/445 (4%)
Query: 192 LQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRY 251
L EP+ S + SVL +L FK+ P+S + A + GL + ++
Sbjct: 106 LIEPNFDSGQLDSVL----------SELFEPFKDKPEST----SSELLAFLKGLGFHKKF 151
Query: 252 DDAWKAYE-AMEANNVRP--DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEV 308
D A +A++ M+ + + D+ +I+I+ + K GR + A F + G L
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA-NMFNGLQEDGFSLDVYS 210
Query: 309 VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK-SNQLEEAEGLFQEM 367
+L+ +F + G EA+ + +ME+ G I YN ++N + K + L ++M
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270
Query: 368 KTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427
K+ G+ P + T+N L+ R + ++ E++ G + +Y L+ YG+ +
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTA 487
+ A M G P+ +Y +LI AY+ G ++A M + KP + TYT
Sbjct: 331 KE-AMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547
LL F R+G M I++ M + + TFN + + +G++ E + E G
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF 607
L P ++T+N L+ +G+ G S++ + KEM P+ T++T+I A+ R F++A
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 608 FYHKQMVKSGQVPDVKSYEKLRSIL 632
+++M+ +G PD+ +Y + + L
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAAL 534
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | ||||||
| 255551665 | 714 | pentatricopeptide repeat-containing prot | 0.943 | 0.906 | 0.694 | 0.0 | |
| 225456802 | 692 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.947 | 0.674 | 0.0 | |
| 297733647 | 746 | unnamed protein product [Vitis vinifera] | 0.947 | 0.871 | 0.674 | 0.0 | |
| 449469755 | 708 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.918 | 0.662 | 0.0 | |
| 356541064 | 703 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.930 | 0.624 | 0.0 | |
| 356544457 | 711 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.929 | 0.614 | 0.0 | |
| 297792331 | 723 | EMB1006 [Arabidopsis lyrata subsp. lyrat | 0.852 | 0.809 | 0.680 | 0.0 | |
| 15240649 | 723 | pentatricopeptide repeat-containing prot | 0.848 | 0.804 | 0.679 | 0.0 | |
| 357487731 | 691 | Pentatricopeptide repeat-containing prot | 0.895 | 0.888 | 0.636 | 0.0 | |
| 356502612 | 697 | PREDICTED: pentatricopeptide repeat-cont | 0.932 | 0.918 | 0.589 | 0.0 |
| >gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/685 (69%), Positives = 544/685 (79%), Gaps = 38/685 (5%)
Query: 26 SKPHLSQSLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQQQRQDPNPQNENHEED 85
SKPHL + SKP + L T S IFLPFL+Q Q+P Q + +
Sbjct: 27 SKPHL---FISSKPARPSFPLFVAHSTPIPRFSPS--IFLPFLEQD-QEPKSQIQEQQRP 80
Query: 86 EEEE------AIDPLLKFFKSQTPT-QDPPALGKLSLQKNRRSSWHLSPHVNSPNQSESD 138
E+E DP+LKFFKS+T T QDPP GK SLQ+NRR+ W L+P V S + +
Sbjct: 81 EQENNDSDLTLTDPILKFFKSRTSTTQDPPHEGKFSLQRNRRTQWRLAPDVESDIGPDDE 140
Query: 139 INDI--------SLEDEAK-------QQMGSLPDGI----------GRVSKRECVQLLEL 173
I+DI S D +K LP+ G++S ECV++LEL
Sbjct: 141 IDDILKNKLLGSSNSDSSKGIVREILNLARELPENTILGEQLGHYKGKISVEECVEVLEL 200
Query: 174 MANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFR 233
M +G++ CLYF+EWMRL EPSLV+ R+C+VLFP+LG+A GD+LMVLF NLPQ+KEFR
Sbjct: 201 MGEEGMVTSCLYFFEWMRLHEPSLVTSRSCTVLFPILGKAGKGDELMVLFMNLPQNKEFR 260
Query: 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEF 293
D HVYNA++SGL +C RYDDA K YEAMEA NV PDHVTCSIMIT MRKNGRSAKEAWEF
Sbjct: 261 DVHVYNASLSGLLYCQRYDDACKVYEAMEAQNVSPDHVTCSIMITMMRKNGRSAKEAWEF 320
Query: 294 FEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353
FEKMNRKGVK S E++GAL+KSFCDEGLKNEALIIQ+EM KKG SNAIVYNTL++AY K
Sbjct: 321 FEKMNRKGVKWSPEILGALVKSFCDEGLKNEALIIQVEMAKKGAFSNAIVYNTLMDAYNK 380
Query: 354 SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKS 413
SNQ+EE EG+F EMK KGLKPTSATFNILMDAYSRRMQPEIVE+LLLE+QD GL+P+AKS
Sbjct: 381 SNQIEEVEGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKS 440
Query: 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473
YTCLISAYGR KM+DMAA+AFLRMK+VGIKPTSHSYTALIHAYSV GWHEKAY+ FENM
Sbjct: 441 YTCLISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENM 500
Query: 474 LREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533
E IKPSIETYTALLDAFRRSGDT +M+IWK+MMSEKVEGTRVTFNILLDGFAKQG Y
Sbjct: 501 QTEGIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQGHY 560
Query: 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593
+EARDV+SEFGK+GL PT+MTYNMLMNAY RGGQ SKLPQLLKEMATLN+KPDS+TY TM
Sbjct: 561 VEARDVISEFGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMATLNLKPDSITYLTM 620
Query: 594 IYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINS 653
IYA++RVRDF+RAFFYHK MVKSGQVPD KSYEKLR+IL+ K KNR+D+SAILGIINS
Sbjct: 621 IYAYIRVRDFRRAFFYHKTMVKSGQVPDAKSYEKLRAILEAKSKIKNRKDRSAILGIINS 680
Query: 654 KMGMVKAKKKGKKDEFWKYKKRHPR 678
KMGM+KAKKKGKKDEFWK KKRHPR
Sbjct: 681 KMGMLKAKKKGKKDEFWKNKKRHPR 705
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Vitis vinifera] gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/701 (67%), Positives = 554/701 (79%), Gaps = 45/701 (6%)
Query: 15 FIDSHCPTHHLSKPHLSQSLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQQQRQD 74
F CP + KPH S++L+ + + +P ++HSS IFLPFLQ+Q +
Sbjct: 8 FSSPSCPLFY-RKPHFSKTLIR-------FSATPSSPVPTPSSHSSSPIFLPFLQEQDRT 59
Query: 75 PNPQNENHEEDEEEEAIDPLLKFFKSQTPTQDPPALGKLSLQKNRRSSWHLSPHVNSPNQ 134
Q + EE E+E+ DP+L+FFKS+T TQDP K SLQKNRR SW L+ + +
Sbjct: 60 LQHQRQQKEE-EDEDPNDPILRFFKSRTSTQDPRFESKFSLQKNRRPSWRLASTTDPESD 118
Query: 135 SESDINDISLEDEAKQQMGS-------------------LPDG----------IGRVSKR 165
+E D+ +E K+Q+ S LP+ +GRV +R
Sbjct: 119 AEFDV------EEEKEQVVSDSCTSLQGISGEILHFARNLPENSTLGEVLGPYVGRVGER 172
Query: 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKN 225
ECV++L LM + L+ CLYF+EWM LQEPSLV+ RACS+LFP+LGRA MGDDLMVL +N
Sbjct: 173 ECVEVLGLMCEEDLVMGCLYFFEWMGLQEPSLVTARACSLLFPMLGRAGMGDDLMVLLRN 232
Query: 226 LPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285
LP++++FRD +YN+AISGL CGRYDDAWK Y+ ME NN+RPDHVTCSIMIT MRK+G
Sbjct: 233 LPKTRQFRDVRIYNSAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGH 292
Query: 286 SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYN 345
SAK+AWEFF++MNRKGVK S EV+GAL+KSFCDEGLKNEALIIQ EMEKKGI SNAIVYN
Sbjct: 293 SAKDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYN 352
Query: 346 TLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405
TL++AY KSN++EEAEGLF EMK KG+ PTSAT+NILMDAYSRRMQPEI+E LLLE+QDM
Sbjct: 353 TLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDM 412
Query: 406 GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465
GLEPN KSYTCLISAYGR +KMSDMAADAFLRMK+VGIKPTSHSYTALIHAYSVGGWHEK
Sbjct: 413 GLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEK 472
Query: 466 AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525
AY AFENM RE IKPSIETYTALLDAFRR+GDT +MKIWKLM+S+K+EGTRVTFNILLD
Sbjct: 473 AYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLD 532
Query: 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585
GFAKQG Y+EARDV+ EFGKIG QPT+MTYNMLMNAY RGGQ S+LPQLLKEM +LN+KP
Sbjct: 533 GFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKP 592
Query: 586 DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKS 645
DS+TYSTMIYA+VRVRDFKRAFFYHKQMVKSGQVPD +SY+KLRSILDVK ATKNR+D+S
Sbjct: 593 DSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKLRSILDVKAATKNRKDRS 652
Query: 646 AILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHAHNG 686
AILGI+NS M + KKGKKDEFWK KK R QS AH+G
Sbjct: 653 AILGIVNSNM-GLLKPKKGKKDEFWKNKKGQRRIQSFAHDG 692
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/695 (67%), Positives = 549/695 (78%), Gaps = 45/695 (6%)
Query: 15 FIDSHCPTHHLSKPHLSQSLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQQQRQD 74
F CP + KPH S++L+ + + +P ++HSS IFLPFLQ+Q +
Sbjct: 8 FSSPSCPLFY-RKPHFSKTLIR-------FSATPSSPVPTPSSHSSSPIFLPFLQEQDRT 59
Query: 75 PNPQNENHEEDEEEEAIDPLLKFFKSQTPTQDPPALGKLSLQKNRRSSWHLSPHVNSPNQ 134
Q + EE E+E+ DP+L+FFKS+T TQDP K SLQKNRR SW L+ + +
Sbjct: 60 LQHQRQQKEE-EDEDPNDPILRFFKSRTSTQDPRFESKFSLQKNRRPSWRLASTTDPESD 118
Query: 135 SESDINDISLEDEAKQQMGS-------------------LPDG----------IGRVSKR 165
+E D+ +E K+Q+ S LP+ +GRV +R
Sbjct: 119 AEFDV------EEEKEQVVSDSCTSLQGISGEILHFARNLPENSTLGEVLGPYVGRVGER 172
Query: 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKN 225
ECV++L LM + L+ CLYF+EWM LQEPSLV+ RACS+LFP+LGRA MGDDLMVL +N
Sbjct: 173 ECVEVLGLMCEEDLVMGCLYFFEWMGLQEPSLVTARACSLLFPMLGRAGMGDDLMVLLRN 232
Query: 226 LPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285
LP++++FRD +YN+AISGL CGRYDDAWK Y+ ME NN+RPDHVTCSIMIT MRK+G
Sbjct: 233 LPKTRQFRDVRIYNSAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGH 292
Query: 286 SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYN 345
SAK+AWEFF++MNRKGVK S EV+GAL+KSFCDEGLKNEALIIQ EMEKKGI SNAIVYN
Sbjct: 293 SAKDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYN 352
Query: 346 TLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405
TL++AY KSN++EEAEGLF EMK KG+ PTSAT+NILMDAYSRRMQPEI+E LLLE+QDM
Sbjct: 353 TLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDM 412
Query: 406 GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465
GLEPN KSYTCLISAYGR +KMSDMAADAFLRMK+VGIKPTSHSYTALIHAYSVGGWHEK
Sbjct: 413 GLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEK 472
Query: 466 AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525
AY AFENM RE IKPSIETYTALLDAFRR+GDT +MKIWKLM+S+K+EGTRVTFNILLD
Sbjct: 473 AYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLD 532
Query: 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585
GFAKQG Y+EARDV+ EFGKIG QPT+MTYNMLMNAY RGGQ S+LPQLLKEM +LN+KP
Sbjct: 533 GFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKP 592
Query: 586 DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKS 645
DS+TYSTMIYA+VRVRDFKRAFFYHKQMVKSGQVPD +SY+KLRSILDVK ATKNR+D+S
Sbjct: 593 DSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKLRSILDVKAATKNRKDRS 652
Query: 646 AILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQ 680
AILGI+NS M + KKGKKDEFWK KK R Q
Sbjct: 653 AILGIVNSNM-GLLKPKKGKKDEFWKNKKGQRRIQ 686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/705 (66%), Positives = 549/705 (77%), Gaps = 55/705 (7%)
Query: 23 HHLSKPHLSQ-------------SLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQ 69
HHL+ P LS S S K L A +P +T S IFL +
Sbjct: 7 HHLTYPFLSIAGANLKQNTSNSFSFFQSNTQKLACCLCAASPN--PSTQSPSPIFLHLFE 64
Query: 70 QQRQDPNPQNENHEEDE-EEEAIDPLLKFFKSQTPT-QDPPALGKLSLQKNRRSSWHLSP 127
++ ++ P E H ++ EE+ DPL +FFKSQT T QDP KL LQKNRRSSWHL+
Sbjct: 65 EEEEEEVPSKEGHGGNKTEEDWNDPLFRFFKSQTSTTQDPSRESKLPLQKNRRSSWHLAS 124
Query: 128 HVNSPNQSESDINDISLEDEAKQQMGS-------LPDGI--------------------- 159
V N++E ++LE E K+Q+ S LP G
Sbjct: 125 DVEFFNEAE-----VTLE-EDKEQLRSASRNSRVLPGGPVGEIVGIARNLSQNMTLGEAL 178
Query: 160 ----GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM 215
GR+S++EC ++L L+ + L+ CCLYF+EWM LQE SLV+ RA S+LFP+LGRA M
Sbjct: 179 GEFEGRISEKECWEVLRLLGEENLVVCCLYFFEWMGLQETSLVTSRAYSLLFPLLGRAGM 238
Query: 216 GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSI 275
G+ +MVLFKNLP KEF+D HVYN+AISGL C RYDDA K YEAME NNV PDHVTCSI
Sbjct: 239 GEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAMETNNVNPDHVTCSI 298
Query: 276 MITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335
MIT MRK GRSAK++W++FEKMN+KGVK S EV+GAL+KSFCDEGLK++ALI+Q+EMEKK
Sbjct: 299 MITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKK 358
Query: 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIV 395
G+ SN I+YNT+++A+ KSNQ+EEAEG+F EMK+KG+KPTSA+FNILM+AYSRRMQPEIV
Sbjct: 359 GVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIV 418
Query: 396 EKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIH 455
EKLL+E++DMGLEPN KSYTCLISAYGR +KMSDMAADAFLRMK+ GI+PTSHSYTALIH
Sbjct: 419 EKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIH 478
Query: 456 AYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG 515
AYSV GWHEKAY+AFENMLRE +KPSIETYT LLDAFRR+GDT +MKIWKLM+ EKV G
Sbjct: 479 AYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLG 538
Query: 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL 575
TRVTFN LLDGFAK G Y+EARDV+SEF KIGLQPT+MTYNMLMNAY RGGQ KLPQLL
Sbjct: 539 TRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLL 598
Query: 576 KEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635
+EMA ++KPDSVTYSTMIYAFVRVRDFKRAFFYHK+MVKSGQVPDVKSY+KL+SILDVK
Sbjct: 599 QEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVK 658
Query: 636 VATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQ 680
+ATKNR+DKSAILGIINSKMGMVKAKK+GKKDEFWK K+RH RTQ
Sbjct: 659 LATKNRKDKSAILGIINSKMGMVKAKKQGKKDEFWKTKRRHVRTQ 703
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/695 (62%), Positives = 529/695 (76%), Gaps = 41/695 (5%)
Query: 14 PFIDSHCPTHHLSKPHLSQSLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQQQRQ 73
PFI H LSKP SL HSK S + S+ IFLP+L+Q
Sbjct: 14 PFISHQIHFHTLSKPF---SLTHSKTS----TFSVSKTLCLCASPSNTPIFLPYLRQLEP 66
Query: 74 DPNPQNENHE---EDEEEEAIDPLLKFFKSQT--PTQDPPALGKLSLQKNRRSSWHL-SP 127
+ + Q E E E++E + DP+ KFFK++T +QDP GKLSLQKNRR SWHL S
Sbjct: 67 ENHEQGEGIETIVEEQEYDPDDPIYKFFKTRTRFSSQDPGKEGKLSLQKNRRISWHLASD 126
Query: 128 HVNSPNQSESDINDISLEDEAKQQMGSLPDGI--------------------------GR 161
+ + E + + + +++ LP+GI R
Sbjct: 127 LIEEEEEPEMGLIEEKEKTVFQKKALPLPEGIVGEIVQLARNLPQNLTLEEALAEYEGRR 186
Query: 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMV 221
VS++EC ++L+L+ ++ LL CCLYF++WMR QEPSLV+PRAC+VLFP+LG+A+MGD LMV
Sbjct: 187 VSEKECWEVLKLLGDEQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLGKAKMGDKLMV 246
Query: 222 LFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281
LF NLP S+EFRD+HVYNAAISGL RY+DAWK YE+MEA+NV PDHVTCSIM+ MR
Sbjct: 247 LFTNLPSSREFRDSHVYNAAISGLLSSARYEDAWKVYESMEADNVLPDHVTCSIMVIVMR 306
Query: 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA 341
K G SAK+AW+FFEKMN KGVK +EV+GAL+KSFC EGL +EALII E+EKKG+ SN
Sbjct: 307 KLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNT 366
Query: 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401
IVYNTL++AYCKSN++EEAEGLF EMKTKG+KPT ATFNILM AYSR+MQPEIVEKL+ E
Sbjct: 367 IVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAE 426
Query: 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461
+Q+ GL+PNAKSYTC+ISAYG+ + MSDMAADAFL+MK+ GIKPTSHSYTALIHAYSV G
Sbjct: 427 MQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSG 486
Query: 462 WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521
WHEKAYAAFENM RE IKPSIETYTALLDAFRR+GDT +MKIWKLM EKVEGTRVTFN
Sbjct: 487 WHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFN 546
Query: 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581
L+DGFAK G Y EARDV+S+F +GL PT+MTYNMLMNAY RGG+ SKLP+LL+EMA
Sbjct: 547 TLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAH 606
Query: 582 NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNR 641
N+KPDSVTYSTMIYAF+RVRDF +AFFYH++MVKSGQV DV SY+KLR++LD K A KNR
Sbjct: 607 NLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMDVDSYQKLRAVLDAKAAIKNR 666
Query: 642 RDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRH 676
+D+ +++G++ +KMG+VK K+ KKDE WKY+KRH
Sbjct: 667 KDRRSMIGVVRNKMGVVKPKR--KKDELWKYRKRH 699
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/705 (61%), Positives = 525/705 (74%), Gaps = 44/705 (6%)
Query: 10 AYLVPFIDSHCPTHHLSKPHLSQSLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQ 69
+Y PFI H LSKP S + L + ++ S IFLP+LQ
Sbjct: 9 SYFHPFISHQIHFHTLSKPFFLSHSKTSTSSLSKTLLCLCASPSNTSHPSPTPIFLPYLQ 68
Query: 70 QQRQDPNPQNENHE---------EDEEEEAIDPLLKFFKSQT--PTQDPPALGKLSLQKN 118
QQ P+N E +++E + DP+ KFFK++T +QDP GKLSLQKN
Sbjct: 69 QQ----EPENREKEGIETIVEEQQEQEHDPDDPIYKFFKTRTRFSSQDPGKEGKLSLQKN 124
Query: 119 RRSSWHLSPHV--NSPNQSESDINDISLEDEAKQQMGSLPDGI----------------- 159
RR SWHL+ + P + + + ++ + K LP+GI
Sbjct: 125 RRISWHLASDLVEEEPEKGLVEEKEETVFQKKKVLPLPLPEGIVGEIVQLARNLTQNLTL 184
Query: 160 --------GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLG 211
GRVS+++C ++L+L+ + LL CCLYF++WMR QEPSLV+PRAC+VLFP+LG
Sbjct: 185 EEALAEYEGRVSEKDCWEVLKLLGEEQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLG 244
Query: 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV 271
+ARMGD LM+LF NLP +EFRD HVYNAAISGL GR +DAWK YE+MEA+NV PDHV
Sbjct: 245 KARMGDKLMLLFTNLPSGREFRDVHVYNAAISGLLSSGRCEDAWKVYESMEADNVLPDHV 304
Query: 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME 331
TCSIM+ MRK G SAK+AW+FFEKMN KGVK +EV+GAL+KSFC EGL +EALII E
Sbjct: 305 TCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSE 364
Query: 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391
+EKKG+ SNAIVYNTL++AYCKSN++EEAEGLF EMKTKG+K T ATFNILM AYSR+MQ
Sbjct: 365 LEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQ 424
Query: 392 PEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYT 451
PEIVEKL+ E+QD GL+PNAKSYTCLISAYG+ + MSDMAADAFL+MK+ GIKPTSHSYT
Sbjct: 425 PEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYT 484
Query: 452 ALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511
ALIHAYSV GWHEKAYAAFENM RE IKPSIETYTALLDAFRR+GDT +MKIWKLM
Sbjct: 485 ALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRY 544
Query: 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571
KVEGTRVTFN L+DGFAK G Y EARDV+S+F +GL PT+MTYNMLMNAY RGGQ SKL
Sbjct: 545 KVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKL 604
Query: 572 PQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631
P+LL+EMA N+KPDSVTYSTMIYAF+RVRDF +AFFYH++MVKSGQV D SY+KLR+I
Sbjct: 605 PELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVIDFNSYQKLRAI 664
Query: 632 LDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRH 676
LD K A KNR+D+ +++G++ +KMG+VK K+ KKDE WKY+KRH
Sbjct: 665 LDAKAAIKNRKDRRSLIGVVRNKMGVVKPKR--KKDELWKYRKRH 707
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata] gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/617 (68%), Positives = 486/617 (78%), Gaps = 32/617 (5%)
Query: 92 DPLLKFFKSQTPT----QDPPALGKLSLQKNRRSSWHLSPHVNSPN---QSE-------- 136
DP+LKFFKS+T T QDP K SLQKNRR+SWHL+ P +SE
Sbjct: 98 DPILKFFKSRTLTSELTQDPGRESKFSLQKNRRTSWHLASDFADPGTEIESEPEESVSVA 157
Query: 137 ----------------SDINDISLEDEAKQQMGSLPDGIGR-VSKRECVQLLELMANDGL 179
+I +I+ Q +G + G R VS+ ECV+ L +M G
Sbjct: 158 NQQTLGVHTSFESSIAGEIFEIAKSLTENQTLGEMLSGFDRRVSETECVEALVMMGESGF 217
Query: 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239
+ CLYFYEWM LQEPSL SPRACSVLF +LGR RM D +++L NLP +EF+D +YN
Sbjct: 218 VKSCLYFYEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFKDVRLYN 277
Query: 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299
AAISGL RYDDAW+ YEAM NV PD+VTC+IMIT MRK GRSAKE WE FEKM+
Sbjct: 278 AAISGLSASQRYDDAWEVYEAMNKINVFPDNVTCAIMITTMRKAGRSAKEVWEIFEKMSD 337
Query: 300 KGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE 359
KGVK SQ+V G L+KSFCDEGLK EAL+IQ EMEKKGI SN IVYNTL++AY KSN +EE
Sbjct: 338 KGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEE 397
Query: 360 AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLIS 419
EGLF E+K KGLKPT+AT+NILMDAY+RRMQP+IVE LL E++D+GLEPN KS+TCLIS
Sbjct: 398 VEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLIS 457
Query: 420 AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479
AYGR +KMSDMAADAFLRMK+VG+KP+SHSYTALIHAYSV GWHEKAYA+FE M E IK
Sbjct: 458 AYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMWMEGIK 517
Query: 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539
PS+ETYT+LLDAFRRSGDT +M+IWKLM+ EK++GTR+T+N LLDGFAKQG Y+EARDV
Sbjct: 518 PSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDV 577
Query: 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599
VSEFGK+GLQP++MTYNMLMNAY RGGQ +KLPQLLKEMA LN+KPDS+TYSTMIYAFVR
Sbjct: 578 VSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
Query: 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVK 659
VRDFKRAFFYHK MVKSGQVPD +SYEKLR+IL+ KV TKNR+DK+AILGIINSK G VK
Sbjct: 638 VRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILENKVKTKNRKDKTAILGIINSKFGRVK 697
Query: 660 AKKKGKKDEFWKYKKRH 676
AK KGKKDEFWKYKK
Sbjct: 698 AKTKGKKDEFWKYKKNQ 714
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50280, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 1006; Flags: Precursor gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana] gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/614 (67%), Positives = 487/614 (79%), Gaps = 32/614 (5%)
Query: 92 DPLLKFFKSQT----PTQDPPALGKLSLQKNRRSSWHLSPHVNSP--------------- 132
DP+LKFFKS+T T DP K SLQKNRR+SWHL+P P
Sbjct: 98 DPILKFFKSRTLTSESTADPARESKFSLQKNRRTSWHLAPDFADPETEIESKPEESVFVT 157
Query: 133 NQS--------ES----DINDISLEDEAKQQMGSLPDGIGR-VSKRECVQLLELMANDGL 179
NQ ES +I +++ + Q +G + G R VS ECV+ L +M G
Sbjct: 158 NQQTLGVHIPFESGVAREILELAKNLKENQTLGEMLSGFERRVSDTECVEALVMMGESGF 217
Query: 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239
+ CLYFYEWM LQEPSL SPRACSVLF +LGR RM D +++L NLP +EFRD +YN
Sbjct: 218 VKSCLYFYEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYN 277
Query: 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299
AAISGL RYDDAW+ YEAM+ NV PD+VTC+I+IT +RK GRSAKE WE FEKM+
Sbjct: 278 AAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSE 337
Query: 300 KGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE 359
KGVK SQ+V G L+KSFCDEGLK EAL+IQ EMEKKGI SN IVYNTL++AY KSN +EE
Sbjct: 338 KGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEE 397
Query: 360 AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLIS 419
EGLF EM+ KGLKP++AT+NILMDAY+RRMQP+IVE LL E++D+GLEPN KSYTCLIS
Sbjct: 398 VEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLIS 457
Query: 420 AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479
AYGR +KMSDMAADAFLRMK+VG+KP+SHSYTALIHAYSV GWHEKAYA+FE M +E IK
Sbjct: 458 AYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIK 517
Query: 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539
PS+ETYT++LDAFRRSGDTG +M+IWKLM+ EK++GTR+T+N LLDGFAKQG Y+EARDV
Sbjct: 518 PSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDV 577
Query: 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599
VSEF K+GLQP++MTYNMLMNAY RGGQ +KLPQLLKEMA LN+KPDS+TYSTMIYAFVR
Sbjct: 578 VSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
Query: 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVK 659
VRDFKRAFFYHK MVKSGQVPD +SYEKLR+IL+ K TKNR+DK+AILGIINSK G VK
Sbjct: 638 VRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTAILGIINSKFGRVK 697
Query: 660 AKKKGKKDEFWKYK 673
AK KGKKDEFWKYK
Sbjct: 698 AKTKGKKDEFWKYK 711
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/661 (63%), Positives = 508/661 (76%), Gaps = 47/661 (7%)
Query: 50 TPT-TFSTTHSSRQIFLPFLQQQRQDPNPQNE--NHEEDEEEEAIDPLLKFFKSQT--PT 104
TP+ T + ++ IFLP +Q Q+ QNE NH DP+ KFFK++T +
Sbjct: 42 TPSLTTPPSSTNTPIFLPLFEQHEQEAE-QNEKSNH---------DPIYKFFKNRTMVSS 91
Query: 105 QDPPALGKLSLQKNRRSSWHLSPH---VNSPNQSESDINDISLEDEAKQQMGSLPDGI-- 159
Q+P GKL L+KNRR+ WHL+ ++E +ND + + K+ LP+G+
Sbjct: 92 QNPSEEGKLLLRKNRRAKWHLASQDLEEEEEEEAEMGMNDEQMVSQKKE--SPLPEGVVE 149
Query: 160 -----------------------GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPS 196
RVS++EC++++E++ + L+ CCLY ++WMR QEPS
Sbjct: 150 EILHLARNLPQNLTLEEALEEYDKRVSEKECLKVMEILGEEQLVVCCLYLFQWMRSQEPS 209
Query: 197 LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256
LV+P+ + LFP+LGRARMGD LMVLF+NLP SKEFR+ VYNAAISGL + GRY DAWK
Sbjct: 210 LVTPKVYTTLFPLLGRARMGDKLMVLFRNLPSSKEFRNVRVYNAAISGLLYDGRYKDAWK 269
Query: 257 AYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316
YE+ME + V PDHVTCSIMI MRK G SAK+AW+FFEKMN+KGV+ +E GAL+KSF
Sbjct: 270 VYESMETDGVLPDHVTCSIMIIGMRKLGHSAKDAWQFFEKMNQKGVRWGKEAFGALIKSF 329
Query: 317 CDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTS 376
C EGL +EALIIQ EMEKKGI SNAIVYNTL++AYCKSN++EEAEGLF EMK KG+KPT+
Sbjct: 330 CVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTA 389
Query: 377 ATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436
TFNILM AYSRRMQP+IVE LL E++D GL+PNA SYTCLISAYGR +KMSDMAADAFL
Sbjct: 390 VTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAADAFL 449
Query: 437 RMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496
+MK+VGIKPTSHSYTA+IHAYSV GWHEKAYA FENM+RE IKPSIETYT LLDAFRR G
Sbjct: 450 KMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAFRRVG 509
Query: 497 DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYN 556
DT +MKIWKLMMSEKV+GT+VTFNIL+DGFAKQG ++EARDV+SEFGKIGLQPT+MTYN
Sbjct: 510 DTETLMKIWKLMMSEKVKGTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPTVMTYN 569
Query: 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616
ML+NAY RGG S +PQLLKEM L ++PDS+TYST+IYAFVRVRDFKRAFFYHK+MVKS
Sbjct: 570 MLINAYARGGLDSNIPQLLKEMEALRLRPDSITYSTVIYAFVRVRDFKRAFFYHKEMVKS 629
Query: 617 GQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRH 676
G V D+ SY KLR+ILDVKVA KN+ DK A+ GIIN +MG +K K+ KKDEFWKYK
Sbjct: 630 GYVMDISSYRKLRAILDVKVADKNKSDKVAMYGIINKQMGFMKNKR--KKDEFWKYKTGR 687
Query: 677 P 677
P
Sbjct: 688 P 688
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/684 (58%), Positives = 515/684 (75%), Gaps = 44/684 (6%)
Query: 23 HHLSKPHLSQSLLHSKPIKAYIALSAITPTTFSTTHSSRQIFLPFLQQQRQDPNPQNENH 82
H LSKP LLHSK + + ++LSA + S S+ I LP+LQ++ + E H
Sbjct: 28 HTLSKPFF---LLHSKTLPSSLSLSASPSNS-SPHSSTTPIPLPYLQEEE-----EEEGH 78
Query: 83 EEDEEEEAIDPLLKFFKSQ--TPTQDPPALGKLSLQKNRRSSWHLSPHVNSPNQSESDIN 140
+ DE P FF++ +QDP + KL L+++ SWHL+ ++ ++ +
Sbjct: 79 DPDE------PNYNFFETSKWISSQDPQSEEKLYLEEDPHISWHLATDLDEESEMSLEKE 132
Query: 141 DISLED-----EAKQQMG-------SLPDGI----------GRVSKRECVQLLELMANDG 178
++ EA+ +G +LP + GR S++EC ++LE++ +
Sbjct: 133 EMGCFQKRELPEAEGIVGEIVELARNLPQNLTLEEALAEYEGRFSEKECWEVLEILGEEH 192
Query: 179 LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238
LL CC+ F++WM LQEPSLV+PRAC+VLFP+LG+ MGD++M LF+NLP S EFRD HVY
Sbjct: 193 LLLCCVCFFQWMSLQEPSLVTPRACTVLFPLLGKGGMGDEVMDLFRNLPSSNEFRDVHVY 252
Query: 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN 298
NA ISGL GR +DAWK YE+ME N+ PDH+TCSIM+T MR+ G SAK+AW+FFEKMN
Sbjct: 253 NATISGLLSSGRSEDAWKVYESMETENIHPDHMTCSIMVTVMRELGHSAKDAWQFFEKMN 312
Query: 299 RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE 358
RKGV+ S+EV+GAL+ SFC EGL+ +ALIIQ EMEKKG+ S+AIVYNTL++A+CKSN +E
Sbjct: 313 RKGVRWSEEVLGALINSFCVEGLRRQALIIQSEMEKKGVSSSAIVYNTLMDAFCKSNHIE 372
Query: 359 EAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418
AEGLF EMK KG+KP +AT+NILM AYSRRMQP+IVEKLL E+QD+GL+PNA SYTCLI
Sbjct: 373 AAEGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIVEKLLEEMQDVGLKPNATSYTCLI 432
Query: 419 SAYGRPRKMSDM-AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE 477
AYG+ + MSDM AADAFL+MK+VG+KPTS SYTALIHAYSV G HEKAYAAFENM E
Sbjct: 433 IAYGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHAYSVSGLHEKAYAAFENMQNEG 492
Query: 478 IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537
IKPSIETYT LL+AFR +GD +M+IWKLM+SEKVEGT TFNIL+DGFAKQG ++EAR
Sbjct: 493 IKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGTGATFNILVDGFAKQGLFMEAR 552
Query: 538 DVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597
+V+SEFGK+GL+PT++TYNML+NAY RGGQ SKLPQLLKEMA L +KPDSVTYSTMI+AF
Sbjct: 553 EVISEFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAVLKLKPDSVTYSTMIFAF 612
Query: 598 VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGM 657
VRVRDF+RAFFYHKQM+KSGQ+ D SY+ L+++L+ + A KN +D S++LGII SKMG+
Sbjct: 613 VRVRDFRRAFFYHKQMIKSGQMMDGGSYQTLQALLETRPARKN-KDWSSLLGIIKSKMGV 671
Query: 658 VKAKKKGKKDEFWKYKKRHPRTQS 681
K + +KDEFWK+KKRH R S
Sbjct: 672 ---KVRRQKDEFWKFKKRHVRKNS 692
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 686 | ||||||
| TAIR|locus:2157732 | 723 | EMB1006 "embryo defective 1006 | 0.778 | 0.738 | 0.700 | 1.4e-216 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.572 | 0.526 | 0.282 | 8.3e-41 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.620 | 0.520 | 0.249 | 9.3e-38 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.516 | 0.433 | 0.293 | 4.9e-37 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.568 | 0.400 | 0.258 | 6.1e-37 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.575 | 0.541 | 0.265 | 9.1e-37 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.651 | 0.518 | 0.232 | 3.7e-36 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.516 | 0.583 | 0.286 | 5.1e-36 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.642 | 0.487 | 0.240 | 5.5e-36 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.596 | 0.666 | 0.249 | 7.7e-36 |
| TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1979 (701.7 bits), Expect = 1.4e-216, Sum P(2) = 1.4e-216
Identities = 375/535 (70%), Positives = 443/535 (82%)
Query: 125 LSPHVNSPNQSESDINDISLEDEAKQQMGSLPDGIGR-VSKRECVQLLELMANDGLLGCC 183
L H+ + +I +++ + Q +G + G R VS ECV+ L +M G + C
Sbjct: 162 LGVHIPFESGVAREILELAKNLKENQTLGEMLSGFERRVSDTECVEALVMMGESGFVKSC 221
Query: 184 LYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243
LYFYEWM LQEPSL SPRACSVLF +LGR RM D +++L NLP +EFRD +YNAAIS
Sbjct: 222 LYFYEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAIS 281
Query: 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK 303
GL RYDDAW+ YEAM+ NV PD+VTC+I+IT +RK GRSAKE WE FEKM+ KGVK
Sbjct: 282 GLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVK 341
Query: 304 LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGL 363
SQ+V G L+KSFCDEGLK EAL+IQ EMEKKGI SN IVYNTL++AY KSN +EE EGL
Sbjct: 342 WSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGL 401
Query: 364 FQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423
F EM+ KGLKP++AT+NILMDAY+RRMQP+IVE LL E++D+GLEPN KSYTCLISAYGR
Sbjct: 402 FTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGR 461
Query: 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIE 483
+KMSDMAADAFLRMK+VG+KP+SHSYTALIHAYSV GWHEKAYA+FE M +E IKPS+E
Sbjct: 462 TKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVE 521
Query: 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543
TYT++LDAFRRSGDTG +M+IWKLM+ EK++GTR+T+N LLDGFAKQG Y+EARDVVSEF
Sbjct: 522 TYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEF 581
Query: 544 GKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDF 603
K+GLQP++MTYNMLMNAY RGGQ +KLPQLLKEMA LN+KPDS+TYSTMIYAFVRVRDF
Sbjct: 582 SKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDF 641
Query: 604 KRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMV 658
KRAFFYHK MVKSGQVPD +SYEKLR+IL+ K TKNR+DK+AILGIINSK G V
Sbjct: 642 KRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTAILGIINSKFGRV 696
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 8.3e-41, P = 8.3e-41
Identities = 113/400 (28%), Positives = 191/400 (47%)
Query: 222 LFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281
+FK + +S+ + YN I G + G D A ++ ME P+ VT + +I
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251
Query: 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA 341
K R + ++ M KG++ + ++ C EG E + EM ++G +
Sbjct: 252 KL-RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Query: 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401
+ YNTLI YCK +A + EM GL P+ T+ L+ + + + L +
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461
++ GL PN ++YT L+ + + M++ A M G P+ +Y ALI+ + V G
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNE-AYRVLREMNDNGFSPSVVTYNALINGHCVTG 429
Query: 462 WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521
E A A E+M + + P + +Y+ +L F RS D +++ + M+ + ++ +T++
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Query: 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581
L+ GF +Q + EA D+ E ++GL P TY L+NAY G K QL EM
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Query: 582 NIKPDSVTYSTMIYAF---VRVRDFKRAFF--YHKQMVKS 616
+ PD VTYS +I R R+ KR ++++ V S
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 108/433 (24%), Positives = 206/433 (47%)
Query: 204 SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYE-AME 262
S++ P ++ L LF+ E + + A + GL + ++D A +A++ M+
Sbjct: 105 SLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELL-AFLKGLGFHKKFDLALRAFDWFMK 163
Query: 263 ANNVRP--DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEG 320
+ + D+ +I+I+ + K GR + A F + G L +L+ +F + G
Sbjct: 164 QKDYQSMLDNSVVAIIISMLGKEGRVSSAA-NMFNGLQEDGFSLDVYSYTSLISAFANSG 222
Query: 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTKGLKPTSATF 379
EA+ + +ME+ G I YN ++N + K + L ++MK+ G+ P + T+
Sbjct: 223 RYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTY 282
Query: 380 NILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMK 439
N L+ R + ++ E++ G + +Y L+ YG+ + + A M
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE-AMKVLNEMV 341
Query: 440 RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTG 499
G P+ +Y +LI AY+ G ++A M + KP + TYT LL F R+G
Sbjct: 342 LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVE 401
Query: 500 MMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559
M I++ M + + TFN + + +G++ E + E GL P ++T+N L+
Sbjct: 402 SAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL 461
Query: 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQV 619
+G+ G S++ + KEM P+ T++T+I A+ R F++A +++M+ +G
Sbjct: 462 AVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVT 521
Query: 620 PDVKSYEKLRSIL 632
PD+ +Y + + L
Sbjct: 522 PDLSTYNTVLAAL 534
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 105/358 (29%), Positives = 169/358 (47%)
Query: 238 YNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297
+N + GLF G +DA + M+ PD T SI+ N + A+ A +E
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEK-AEAALGVYETA 345
Query: 298 NRKGVKLSQEVVGALMKSFCDEG-LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356
GVK++ L+ + C EG ++ I+ EM K G+ N ++YNT+I+ YC+
Sbjct: 346 VDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVIYNTMIDGYCRKGD 404
Query: 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTC 416
L A + M+ +G+KP +N L+ + + E EK + +++ G+ P+ ++Y
Sbjct: 405 LVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI 464
Query: 417 LISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476
LI YGR + D D M+ G P SY LI+ G +A +M
Sbjct: 465 LIGGYGRKYEF-DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDR 523
Query: 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536
+ P + Y L+D G + K M+ + +E VT+N L+DG + G+ EA
Sbjct: 524 GVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEA 583
Query: 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594
D++ E + GL+P + TYN L++ YG G + L +EM IKP TY +I
Sbjct: 584 EDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI 641
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.1e-37, P = 6.1e-37
Identities = 102/394 (25%), Positives = 197/394 (50%)
Query: 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFE 295
++Y+ I + G + A ++ M A+ + P + +I + ++ ++ +E
Sbjct: 348 YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE-KNVRQGYELLV 406
Query: 296 KMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN 355
+M ++ + +S G ++K C G + A I EM G N ++Y TLI + +++
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT 415
+ +A + +EMK +G+ P +N L+ S+ + + L+E+ + GL+PNA +Y
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526
Query: 416 CLISAYGRPRKMSDMAADAFLR-MKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474
IS Y + + +AD +++ M+ G+ P T LI+ Y G +A +A+ +M+
Sbjct: 527 AFISGYIEASEFA--SADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 475 REEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYL 534
+ I +TYT L++ ++ +I++ M + + ++ +L++GF+K G
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQ 644
Query: 535 EARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594
+A + E + GL P ++ YNML+ + R G+ K +LL EM+ + P++VTY T+I
Sbjct: 645 KASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTII 704
Query: 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628
+ + D AF +M G VPD Y L
Sbjct: 705 DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTL 738
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 9.1e-37, P = 9.1e-37
Identities = 106/399 (26%), Positives = 190/399 (47%)
Query: 232 FRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAW 291
+ D YN IS G ++A++ AM P T + +I + K+G+ + A
Sbjct: 267 YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER-AK 325
Query: 292 EFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351
E F +M R G+ +L+ C +G E + +M + + + + ++++++ +
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLF 385
Query: 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA 411
+S L++A F +K GL P + + IL+ Y R+ + L E+ G +
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445
Query: 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFE 471
+Y ++ + RKM A F M + P S++ T LI + G + A F+
Sbjct: 446 VTYNTILHGLCK-RKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504
Query: 472 NMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG 531
M + I+ + TY LLD F + GD +IW M+S+++ T ++++IL++ +G
Sbjct: 505 KMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564
Query: 532 QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYS 591
EA V E ++PT+M N ++ Y R G S L++M + PD ++Y+
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN 624
Query: 592 TMIYAFVRVRDFKRAFFYHKQMVKS--GQVPDVKSYEKL 628
T+IY FVR + +AF K+M + G VPDV +Y +
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSI 663
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 3.7e-36, P = 3.7e-36
Identities = 104/448 (23%), Positives = 210/448 (46%)
Query: 184 LYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243
L +++M+ Q + +++ +LGR + D + +F +P R Y A I+
Sbjct: 125 LRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALIN 184
Query: 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK 303
GRY+ + + + M+ + P +T + +I A + G + F +M +G++
Sbjct: 185 AYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQ 244
Query: 304 LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGL 363
L+ + GL +EA ++ M GI + Y+ L+ + K +LE+ L
Sbjct: 245 PDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDL 304
Query: 364 FQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423
EM + G P ++N+L++AY++ + + ++Q G PNA +Y+ L++ +G+
Sbjct: 305 LGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQ 364
Query: 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIE 483
+ D+ FL MK P + +Y LI + GG+ ++ F +M+ E I+P +E
Sbjct: 365 SGRYDDVR-QLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423
Query: 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543
TY ++ A + G KI + M + + + + +++ F + Y EA +
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 544 GKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDF 603
++G P++ T++ L+ ++ RGG + +L + I + T++ I A+ + F
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 604 KRAFFYHKQMVKSGQVPDVKSYEKLRSI 631
+ A + M KS PD ++ E + S+
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSV 571
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 5.1e-36, P = 5.1e-36
Identities = 102/356 (28%), Positives = 175/356 (49%)
Query: 273 CSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEM 332
C ++ M K + W F+ ++ G L+ V LM FC EG ++A + E+
Sbjct: 208 CGNLLDRMMKLNPTGT-IWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEI 266
Query: 333 EKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392
K+ + + +NTLIN YCK L+E L +M+ +P T++ L++A + +
Sbjct: 267 TKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326
Query: 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTA 452
+ L E+ GL PN +T LI + R ++ D+ +++ +M G++P Y
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEI-DLMKESYQKMLSKGLQPDIVLYNT 385
Query: 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512
L++ + G A + M+R ++P TYT L+D F R GD ++I K M
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445
Query: 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP 572
+E RV F+ L+ G K+G+ ++A + E + G++P +TY M+M+A+ + G
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGF 505
Query: 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628
+LLKEM + P VTY+ ++ ++ K A M+ G VPD +Y L
Sbjct: 506 KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTL 561
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 5.5e-36, P = 5.5e-36
Identities = 107/444 (24%), Positives = 205/444 (46%)
Query: 188 EWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247
E +R+ + SP ++ V + + + +F N+ N+ +S L
Sbjct: 143 ELVRVFKEFSFSPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVR 202
Query: 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE 307
G A Y+ M + V PD TCSI++ A ++G K E + G++L+
Sbjct: 203 KGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVV 262
Query: 308 VVGALMKSFCDEG-LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQE 366
+L+ + G ++ ++++ M ++G+ N + Y +LI YCK +EEAE +F+
Sbjct: 263 TYNSLINGYAMIGDVEGMTRVLRL-MSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFEL 321
Query: 367 MKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRK 426
+K K L + +LMD Y R Q ++ + ++G+ N LI+ Y + +
Sbjct: 322 LKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQ 381
Query: 427 MSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYT 486
+ + A F RM +KP H+Y L+ Y G+ ++A + M ++E+ P++ TY
Sbjct: 382 LVE-AEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYN 440
Query: 487 ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546
LL + R G ++ +WK+M+ V ++ + LL+ K G + EA +
Sbjct: 441 ILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLAR 500
Query: 547 GLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRA 606
GL +T N++++ + + ++ ++L + KP TY + + + +V + K A
Sbjct: 501 GLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEA 560
Query: 607 FFYHKQMVKSGQVPDVKSYEKLRS 630
F + M + G P ++ Y L S
Sbjct: 561 FAVKEYMERKGIFPTIEMYNTLIS 584
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 7.7e-36, P = 7.7e-36
Identities = 103/413 (24%), Positives = 203/413 (49%)
Query: 217 DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276
D+ + LF + +S+ F ++ +S + ++D E ME V + T +IM
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106
Query: 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG 336
I + + + + A KM + G S + +L+ FC +EA+ + +M + G
Sbjct: 107 INCLCRRSQLSF-ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 337 IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVE 396
+ + + TL++ + N+ EA L + M KG +P T+ +++ +R +P++
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHA 456
LL +++ +E + Y+ +I + + R + D A + F M GI+P +Y++LI
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDD-ALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 457 Y-SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG 515
+ G W + A +ML +I P++ T+ +L+DAF + G K++ M+ ++
Sbjct: 285 LCNYGRWSD-ASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL 575
VT+N L++GF + EA+ + + P ++TYN L+N + + + +L
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 576 KEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628
++M+ + ++VTY+T+I+ F + D A KQMV G P++ +Y L
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTL 456
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FGR7 | PP426_ARATH | No assigned EC number | 0.6791 | 0.8483 | 0.8049 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 686 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-26
Identities = 73/300 (24%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 331 EMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM 390
EM G+ +N + LI+ ++ Q+ +A G + M++K +KP FN L+ A
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG--- 553
Query: 391 QPEIVEKLLLELQDMGLE-----PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP 445
Q V++ L +M E P+ + L+ A ++ D A + + + IK
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV-DRAKEVYQMIHEYNIKG 612
Query: 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIW 505
T YT +++ S G + A + +++M ++ +KP ++AL+D +G G + K +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV---AGHAGDLDKAF 669
Query: 506 KLMMSEKVEGTR---VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562
+++ + +G + V+++ L+ + + +A ++ + I L+PT+ T N L+ A
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622
G Q K ++L EM L + P+++TYS ++ A R D Q + G P++
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-20
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 43/252 (17%)
Query: 234 DAHVYNAAISGLFWCGRYDDAWKAYEAM-----EANNVRPDHVTCSIMITA--------- 279
D V+NA IS CG+ +A++ + E + + PDH+T ++ A
Sbjct: 541 DRVVFNALISA---CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 280 -------MRKNG--------------RSAKEAWEF----FEKMNRKGVKLSQEVVGALMK 314
+ + S K W+F ++ M +KGVK + AL+
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 315 SFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP 374
G ++A I + K+GI + Y++L+ A + ++A L++++K+ L+P
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADA 434
T +T N L+ A Q ++L E++ +GL PN +Y+ L+ A R + +D+ D
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER-KDDADVGLDL 776
Query: 435 FLRMKRVGIKPT 446
+ K GIKP
Sbjct: 777 LSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 1e-19
Identities = 72/289 (24%), Positives = 128/289 (44%), Gaps = 7/289 (2%)
Query: 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFE 295
H + A I G G+ A+ AY M + NV+PD V + +I+A ++G + A++
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR-AFDVLA 566
Query: 296 KMN--RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353
+M + VGALMK+ + G + A + + + I VY +N+ +
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626
Query: 354 SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKS 413
+ A ++ +MK KG+KP F+ L+D + ++L + + G++ S
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473
Y+ L+ A K A + + +K + ++PT + ALI A G KA M
Sbjct: 687 YSSLMGACSNA-KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 474 LREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNI 522
R + P+ TY+ LL A R D + + L+ K +G + +
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGL---DLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 3e-18
Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 13/306 (4%)
Query: 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391
+++ G+ ++ +Y TLI+ KS +++ +F EM G++ TF L+D +R Q
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522
Query: 392 PEIVEKLLLE---LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG--IKPT 446
V K ++ ++P+ + LISA G+ + D A D MK I P
Sbjct: 523 ---VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV-DRAFDVLAEMKAETHPIDPD 578
Query: 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWK 506
+ AL+ A + G ++A ++ + IK + E YT +++ + GD + I+
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566
M + V+ V F+ L+D G +A +++ + K G++ ++Y+ LM A
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 567 QTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYE 626
K +L +++ ++ ++P T + +I A +A +M + G P+ +Y
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY- 757
Query: 627 KLRSIL 632
SIL
Sbjct: 758 ---SIL 760
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 1e-17
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388
+ + YNTLI+ YCK ++EEA LF EMK +G+KP T++IL+D +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-16
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 1/183 (0%)
Query: 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEK 296
VY A++ G +D A Y+ M+ V+PD V S ++ G +A+E +
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQD 674
Query: 297 MNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356
++G+KL +LM + + +AL + +++ + N LI A C+ NQ
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTC 416
L +A + EMK GL P + T++IL+ A R+ ++ LL + ++ G++PN C
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 417 LIS 419
+
Sbjct: 795 ITG 797
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 3e-16
Identities = 67/305 (21%), Positives = 141/305 (46%), Gaps = 29/305 (9%)
Query: 344 YNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403
+N L++ S ++ A + + ++ GLK + L+ ++ + + + ++ E+
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 404 DMGLEPNAKSYTCLISAYGRPRKMSDMAADAF-----LRMKRVGIKPTSHSYTALIHAYS 458
+ G+E N ++ LI R ++ A AF +R K V KP + ALI A
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQV----AKAFGAYGIMRSKNV--KPDRVVFNALISACG 553
Query: 459 VGGWHEKAYAAFENMLREE--IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT 516
G ++A+ M E I P T AL+ A +G ++++++ ++GT
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLK 576
+ I ++ +++G + A + + K G++P + ++ L++ G G K ++L+
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 577 EMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI-LDVK 635
+ IK +V+YS+++ A +++K+A ++ YE ++SI L
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKA---------------LELYEDIKSIKLRPT 718
Query: 636 VATKN 640
V+T N
Sbjct: 719 VSTMN 723
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 8e-14
Identities = 86/373 (23%), Positives = 143/373 (38%), Gaps = 63/373 (16%)
Query: 231 EFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEA 290
E +DA + A ISG G D A + Y ME +NV PD +T + +++A G
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV-G 408
Query: 291 WEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350
+ E RKG+ V AL++ + ++AL + + +K + I + ++I
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAG 464
Query: 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----RMQPEIVEKLLLELQDMG 406
+N+ EA F++M LKP S T + A +R EI +L +G
Sbjct: 465 LRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVL--RTGIG 521
Query: 407 LE---PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWH 463
+ PNA L+ Y R +M+ K V S+ L+ Y G
Sbjct: 522 FDGFLPNA-----LLDLYVRCGRMNYAWNQFNSHEKDVV------SWNILLTGYVAHGKG 570
Query: 464 EKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNIL 523
A F M+ + P T+ +LL A RS GM+ + + S +
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRS---GMVTQGLEYFHSMEE---------- 617
Query: 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583
K + P L Y +++ GR G+ ++ + +M I
Sbjct: 618 ---------------------KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---I 653
Query: 584 KPDSVTYSTMIYA 596
PD + ++ A
Sbjct: 654 TPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 82/341 (24%), Positives = 150/341 (43%), Gaps = 18/341 (5%)
Query: 222 LFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281
LF +P+ R+ + I GL G Y +A+ + M + + T +M+ A
Sbjct: 180 LFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA 341
G SA+ + + + GV V AL+ + G +A + M +K
Sbjct: 236 GLG-SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT---- 290
Query: 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401
+ +N+++ Y EEA L+ EM+ G+ TF+I++ +SR E ++
Sbjct: 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461
L G + + T L+ Y + +M D A + F RM R + S+ ALI Y G
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMED-ARNVFDRMPRKNLI----SWNALIAGYGNHG 405
Query: 462 WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM-SEKVEGTRVTF 520
KA FE M+ E + P+ T+ A+L A R SG + +I++ M + +++ + +
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465
Query: 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561
+++ ++G EA + + +PT+ + L+ A
Sbjct: 466 ACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTA 503
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 6e-13
Identities = 85/391 (21%), Positives = 153/391 (39%), Gaps = 72/391 (18%)
Query: 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEF 293
D V N+ I G + +A K + ME D V+ + MI+ KNG K A E
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDK-ALET 376
Query: 294 FEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353
+ M + V + + +++ + G + + + E+KG+ S +V N LI Y K
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 354 SNQLEEAEGLFQEMKTK----------GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403
+++A +F + K GL+ + F L+ + R+M
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI--FFRQML------------ 482
Query: 404 DMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWH 463
+ L+PN+ + +SA R A + K IHA+ +
Sbjct: 483 -LTLKPNSVTLIAALSACAR--------IGALMCGKE-------------IHAHVL---- 516
Query: 464 EKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNIL 523
+ F+ L P+ ALLD + R G W S + + V++NIL
Sbjct: 517 -RTGIGFDGFL-----PN-----ALLDLYVRCGRMNYA---WNQFNSHEKD--VVSWNIL 560
Query: 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT-LN 582
L G+ G+ A ++ + + G+ P +T+ L+ A R G ++ + M +
Sbjct: 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620
Query: 583 IKPDSVTYSTMIYAFVRVRDFKRAFFYHKQM 613
I P+ Y+ ++ R A+ + +M
Sbjct: 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-12
Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 25/288 (8%)
Query: 217 DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276
+D +F +P+ + +N+ ++G G ++A Y M + V D T SIM
Sbjct: 276 EDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 277 ITAMRKNGR--SAKEAWEFFEKMNRKGVKLSQEVVG--ALMKSFCDEGLKNEALIIQMEM 332
I + AK+A + R G L ++V AL+ + G +A + M
Sbjct: 332 IRIFSRLALLEHAKQA---HAGLIRTGFPL--DIVANTALVDLYSKWGRMEDARNVFDRM 386
Query: 333 EKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA--YSRRM 390
+K N I +N LI Y + +A +F+ M +G+ P TF ++ A YS +
Sbjct: 387 PRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG-L 441
Query: 391 QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY 450
+ E ++ ++P A Y C+I GR + + A+ ++R KPT + +
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE----AYAMIRRAPFKPTVNMW 497
Query: 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDT 498
AL+ A + E A E + + + Y LL+ + SG
Sbjct: 498 AALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQ 544
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-11
Identities = 92/415 (22%), Positives = 165/415 (39%), Gaps = 41/415 (9%)
Query: 222 LFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA-- 279
+F +P+ RD +NA ISG F G + + + M +V PD +T + +I+A
Sbjct: 244 VFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS 339
+ + R +E + K G + V +L++ + G EA + ME K S
Sbjct: 300 LLGDERLGREMHGYVVK---TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356
Query: 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399
+ +I+ Y K+ ++A + M+ + P T ++ A + ++ KL
Sbjct: 357 ----WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412
Query: 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459
+ GL LI Y + + + D A + F + + S+T++I +
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCI-DKALEVFHNIPEKDVI----SWTSIIAGLRL 467
Query: 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVT 519
+A F ML +KP+ T A L A R G +I ++ +
Sbjct: 468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526
Query: 520 FNILLDGFAKQGQY--------LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571
N LLD + + G+ +DVVS +N+L+ Y G+ S
Sbjct: 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVS-------------WNILLTGYVAHGKGSMA 573
Query: 572 PQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF-FYHKQMVKSGQVPDVKSY 625
+L M + PD VT+ +++ A R + ++H K P++K Y
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599
P ++TYN L++ Y + G+ + +L EM IKP+ TYS +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 8e-10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK 282
D YN I G G+ ++A K + M+ ++P+ T SI+I + K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-09
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 335 KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMK 368
KG+ + + YNTLI+ C++ +++EA L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564
VT+N L+DG+ K+G+ EA + +E K G++P + TY++L++ +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 311 ALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK 353
L+ +C +G EAL + EM+K+GI N Y+ LI+ CK
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 6e-09
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 409 PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457
P+ +Y LI Y + + + A F MK+ GIKP ++Y+ LI
Sbjct: 1 PDVVTYNTLIDGYCK-KGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 374 PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423
P T+N L+D Y ++ + E KL E++ G++PN +Y+ LI +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGL 372
+ YN+LI+ YCK+ +LEEA LF+EMK KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTS 376
+ YNTLI+ CK+ ++EEA LF+EMK +G++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 445 PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF 492
P +Y LI Y G E+A F M + IKP++ TY+ L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 70/362 (19%), Positives = 146/362 (40%), Gaps = 23/362 (6%)
Query: 240 AAISGLFWCGRYDDAWKAYEAMEAN-----NVRPDHVTCSIMITAMRKNGRSAKEAWEFF 294
+ I L CGR+ +A + +E +EA I A++ W
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWH-- 148
Query: 295 EKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS 354
+ G + Q ++ ++ G+ +A + EM ++ N + T+I +
Sbjct: 149 --VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDA 202
Query: 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSY 414
EA LF+EM G TF +++ A + ++L + G+ +
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 415 TCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474
LI Y + + D A F M T+ ++ +++ Y++ G+ E+A + M
Sbjct: 263 CALIDMYSKCGDIED-ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 475 REEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYL 534
+ T++ ++ F R + ++ V L+D ++K G+
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 535 EARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594
+AR+V F ++ + L+++N L+ YG G+ +K ++ + M + P+ VT+ ++
Sbjct: 378 DARNV---FDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 595 YA 596
A
Sbjct: 434 SA 435
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529
P + TY L+D + + G +K++ M ++ T++IL+DG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 75/384 (19%), Positives = 144/384 (37%), Gaps = 18/384 (4%)
Query: 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFE 295
H N+ + L G+ + A K E+M+ V D + + + + R+ +E
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRAVEEGSRVCS 110
Query: 296 KMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN 355
+ L + A++ F G A + +M ++ + S +N L+ Y K+
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAG 166
Query: 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT 415
+EA L+ M G++P TF ++ ++ + G E +
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 416 CLISAYGRPRKMSDM--AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473
LI+ Y K D+ A F RM R S+ A+I Y G + F M
Sbjct: 227 ALITMYV---KCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTM 279
Query: 474 LREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533
+ P + T T+++ A GD + ++ ++ N L+ + G +
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593
EA V S +++ +++ Y + G K + M N+ PD +T +++
Sbjct: 340 GEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 594 IYAFVRVRDFKRAFFYHKQMVKSG 617
+ A + D H+ + G
Sbjct: 396 LSACACLGDLDVGVKLHELAERKG 419
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 585 PDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632
PD VTY+T+I + + + A +M K G P+V +Y SIL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY----SIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 63/247 (25%)
Query: 217 DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276
+D +F +P+ ++ +NA I+G GR A + +E M A V P+HVT +
Sbjct: 377 EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 277 ITAMRKNGRSAKEAWEFFEKMNR-KGVKLSQEVVGALMKSFCDEGLKNEAL--------- 326
++A R +G S ++ WE F+ M+ +K +++ EGL +EA
Sbjct: 433 LSACRYSGLS-EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491
Query: 327 ----------------------------IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE 358
+ M EK Y L+N Y S +
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN------NYVVLLNLYNSSGRQA 545
Query: 359 EAEGLFQEMKTKGL-------------KPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405
EA + + +K KGL + S + SR + + +++L+ E+ +
Sbjct: 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK-LDELMKEISEY 604
Query: 406 GLEPNAK 412
G
Sbjct: 605 GYVAEEN 611
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 84/367 (22%), Positives = 138/367 (37%), Gaps = 52/367 (14%)
Query: 188 EWMRLQEPSLVSPRACSVL------FPV-LGRA------RMGD--DLMVLFKNLPQSKEF 232
EW R E R CS V LG A R G+ +F +P+
Sbjct: 97 EWKRAVEEGS---RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE---- 149
Query: 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVT--CSIMITAMRKNGRSAKEA 290
RD +N + G G +D+A Y M VRPD T C + + +E
Sbjct: 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 291 WEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350
+ R G +L +VV AL+ + G A ++ M ++ I +N +I+
Sbjct: 210 ---HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISG 262
Query: 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA--------YSRRMQPEIVEKLLLEL 402
Y ++ + E LF M+ + P T ++ A R M +V+
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT----- 317
Query: 403 QDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGW 462
G + LI Y + A F RM+ S+TA+I Y G
Sbjct: 318 ---GFAVDVSVCNSLIQMYLSLGSWGE-AEKVFSRMETKDAV----SWTAMISGYEKNGL 369
Query: 463 HEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNI 522
+KA + M ++ + P T ++L A GD + +K+ +L + + V N
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 523 LLDGFAK 529
L++ ++K
Sbjct: 430 LIEMYSK 436
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 22/228 (9%)
Query: 398 LLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457
L +L PN Y R R +S A+ + ++H + + A
Sbjct: 14 NLFQLASHKA-PNVLPYWNF-HGRKRSRGLSVAASSS----------SSTHDSNSQLRAL 61
Query: 458 SVGGWHEKAYAAFENMLREEIKPSIETYTAL--LDAFRRSGDTGMMMKIWKLMMSEKVE- 514
G E+A E+M + + Y AL L ++R+ + G ++ +S
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGS--RVCSRALSSHPSL 119
Query: 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQL 574
G R+ N +L F + G+ + A V FGK+ + L ++N+L+ Y + G + L
Sbjct: 120 GVRLG-NAMLSMFVRFGELVHAWYV---FGKMP-ERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 575 LKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622
M ++PD T+ ++ + D R H +V+ G DV
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 341 AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP 374
YN L+ A K+ + A + +EMK GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622
VTY+T+I + + A K+M + G PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 53/271 (19%), Positives = 105/271 (38%), Gaps = 10/271 (3%)
Query: 348 INAYCKSNQLEEAEGLFQEMKTKG-LKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMG 406
I + EA LF+ ++ ++T++ L++A V+ + ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 407 LEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKA 466
EP+ ++ + + + D A F M + S+ +I G + +A
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLID-ARRLFDEMPERNL----ASWGTIIGGLVDAGNYREA 208
Query: 467 YAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG 526
+A F M + T+ +L A G ++ ++ V G L+D
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586
++K G +AR V + T + +N ++ Y G + + L EM + D
Sbjct: 269 YSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617
T+S MI F R+ + A H ++++G
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI 482
+Y LI G E+A F+ M I+P +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 553 MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS 587
+TYN L++ + G+ + +L KEM I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 8e-04
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 264 NNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297
++PD VT + +I + + GR EA E ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGR-VDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620
TY+ ++ A + D A ++M SG P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP 550
T+N LL AK G A V+ E GL+P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE 514
+ETY ALL A ++GD + + + + M + ++
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (93), Expect = 0.002
Identities = 49/238 (20%), Positives = 82/238 (34%), Gaps = 4/238 (1%)
Query: 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLF-KNLP 227
L L+ G L L E P+ +L L + ++ + L K L
Sbjct: 28 AGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE 87
Query: 228 QSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSA 287
A L G+Y++A + E A + PD + + A+ + G
Sbjct: 88 LELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD-Y 146
Query: 288 KEAWEFFEKMNRKGVKLSQEVVG--ALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYN 345
+EA E +EK +L++ AL G EAL + + K +A
Sbjct: 147 EEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206
Query: 346 TLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403
L Y K + EEA +++ A +N+ + E +E L L+
Sbjct: 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 413 SYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS 447
+Y LI + + A + F MK GI+P
Sbjct: 2 TYNTLIDGLCK-AGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.06 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.89 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.61 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.25 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.77 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.65 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.52 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.39 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.27 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.26 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.22 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.15 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.15 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.85 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.71 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.69 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.64 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.55 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.42 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.19 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.13 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.06 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.67 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.56 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.49 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.99 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.96 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.75 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.54 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.47 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.7 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.69 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.17 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.69 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.42 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.14 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.89 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.63 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.36 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.07 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.52 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.19 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.6 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.01 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.95 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.41 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.03 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.9 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.86 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.68 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.67 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.63 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.51 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.42 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.5 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.12 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.01 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.94 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.76 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.66 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.65 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.28 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.88 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.11 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.86 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.79 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.74 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.28 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.42 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.3 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.02 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-64 Score=563.21 Aligned_cols=516 Identities=19% Similarity=0.280 Sum_probs=471.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
.+..+...+..++..+++.|++++|+++|++|...+....+...+..++..|.+.|.+++|..+|+.|.. |+..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 4455678899999999999999999999999999876666777888899999999999999999999986 999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+ +++|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~-vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT--KGLKPTSATFNILMDAYSRRMQPEIVE 396 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (686)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.|+.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 579999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
++|+.|.+.|+.|+..+|+.+|.+|++.|+. ++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~-deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW-DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887 889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYN 556 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (686)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+||.||.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHH
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR----V-------------------RDFKRAFFYHKQM 613 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m 613 (686)
.|+.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876542 1 2246899999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhhh-------------hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCc
Q 044251 614 VKSGQVPDVKSYEKLRSILDVKVA-------------TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQ 680 (686)
Q Consensus 614 ~~~g~~p~~~~~~~l~~~l~a~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~ 680 (686)
++.|+.||..+|..++..+..... ............++.+ +.. ...+|..+|.+|.+.+. -|
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g---~~~-~~~~A~~l~~em~~~Gi-~p 913 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG---FGE-YDPRAFSLLEEAASLGV-VP 913 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh---hcc-ChHHHHHHHHHHHHcCC-CC
Confidence 999999999999999876622110 0111111111222211 111 13589999999999997 78
Q ss_pred cccCC
Q 044251 681 SHAHN 685 (686)
Q Consensus 681 ~~~~~ 685 (686)
+.+.+
T Consensus 914 ~~~~~ 918 (1060)
T PLN03218 914 SVSFK 918 (1060)
T ss_pred Ccccc
Confidence 77643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-61 Score=538.98 Aligned_cols=464 Identities=17% Similarity=0.247 Sum_probs=440.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
.+.-.+..++..+.+.|.+++|+.+|+.|.. ++..+|+.++.+|++.|+++.|.++|+.|...+..||..+|+.|
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445556788889999999999999998864 56799999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+ +++|+++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~-~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 322 KNEALIIQMEMEK--KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 322 ~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
+++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999986 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
++|.+.|+.||..+|+.++.+|++.|+. ++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.
T Consensus 638 ~eM~~~Gv~PD~~TynsLI~a~~k~G~~-eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKKGVKPDEVFFSALVDVAGHAGDL-DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999887 889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh----c-------------------CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 560 NAYGR----G-------------------GQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 560 ~~~~~----~-------------------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..|.+ . +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 76442 1 123679999999999999999999999998888999999999999999888
Q ss_pred CCCCCHHHHHHHHHHH
Q 044251 617 GQVPDVKSYEKLRSIL 632 (686)
Q Consensus 617 g~~p~~~~~~~l~~~l 632 (686)
+..|+..+|..+++.+
T Consensus 877 ~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGF 892 (1060)
T ss_pred CCCcchhhhHHHHHhh
Confidence 8889999999999887
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=536.05 Aligned_cols=452 Identities=21% Similarity=0.286 Sum_probs=416.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC--------------------------------CCCHHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQE--PS--------------------------------LVSPRACSVLF 207 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~--~~--------------------------------~~~~~~~~~l~ 207 (686)
.+...++.++..+++.|++++|+++|+.|...+ |+ ..+..+++.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 466788999999999999999999999997652 21 12445678888
Q ss_pred HHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 044251 208 PVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSA 287 (686)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 287 (686)
.+|++.|++++|.++|+.|.. +|+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+ .
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~-~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-E 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-h
Confidence 999999999999999999986 88999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 288 KEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 58899999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh
Q 044251 368 KTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS 447 (686)
Q Consensus 368 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 447 (686)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+.+|++.|+. ++|.++|+.|.+ +|.
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI-DKALEVFHNIPE----KDV 455 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH-HHHHHHHHhCCC----CCe
Confidence 999999999999999999999999999999999999999999999999999999999887 889999999975 588
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
.+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+++.|+.++..++|+|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999986 599999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 607 (686)
+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 9999999998888876 57888999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHH
Q 044251 608 FYHKQMV-KSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 608 ~~~~~m~-~~g~~p~~~~~~~l~~~l~ 633 (686)
++|+.|. +.|+.|+..+|..++++|.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999988 5688888888888888883
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-59 Score=532.58 Aligned_cols=498 Identities=19% Similarity=0.214 Sum_probs=465.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
+..++...+..++..+.+.+.++.|.+++..+....+. .+...++.++..|++.|+++.|+++|+.|.. +|+.+|
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~ 155 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSW 155 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEH
Confidence 34556777888999999999999999999999887654 5668899999999999999999999999987 899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
|.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+. +..+.+++..|.+.|+.|+..+++.|+.+|++
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD-LARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc-hhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.++
T Consensus 235 ~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 235 CGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999964 588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 399 LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
+..|.+.|+.||..+|+.++.+|++.|+. ++|.++|+.|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSW-GEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCH-HHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999887 889999999964 6899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+||.|+++|+++|++++|.++|++|. .+|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5689999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhh-
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVA- 637 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~- 637 (686)
|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..|++.|+.+|..+++.+++.+..++.
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 69999999999999999999999999999999999999999999999888844332
Q ss_pred ----------hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 638 ----------TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 638 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
.++...|+.++..+ . .+|+.++|+++|.+|.+.+. .||+
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~-~----~~G~~~~A~~lf~~M~~~g~-~Pd~ 589 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGY-V----AHGKGSMAVELFNRMVESGV-NPDE 589 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHH-H----HcCCHHHHHHHHHHHHHcCC-CCCc
Confidence 44566787777776 2 56689999999999999876 5553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=515.59 Aligned_cols=451 Identities=18% Similarity=0.285 Sum_probs=429.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...++.++..+.+.|++++|+++|++|....+..++..+|+.++.++++.++++.+.+++..|...|..||..+||.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567889999999999999999999998877778899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
+|++.|++++|.++|++|. .||..+|++++.+|++.|+ +++|+++|++|.+.|+.|+..+|+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999997 5899999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
.+.+++..+.+.|+.+|..+|+.||.+|++.|++++|.++|++|.. +|.++||.|+.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999964 589999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044251 404 DMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIE 483 (686)
Q Consensus 404 ~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 483 (686)
+.|+.||..+|+.++.+|++.|.. +.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALL-EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccch-HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 999999999999999999999887 8899999999999999999999999999999999999999999995 47999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK-IGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 562 (686)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.|+.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 69999999999999999
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSILD 633 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l~ 633 (686)
++.|++++|.+++++| ++.||..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..+++++.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 9999999999999876 6799999999999999999999999999999975 4464 578888888874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=494.94 Aligned_cols=441 Identities=20% Similarity=0.262 Sum_probs=420.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
..++...+..++..+++.++++.|.+++..+...+ ..++..+++.++.+|++.|++++|.++|++|.. ||..+||
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 35788899999999999999999999999998874 345789999999999999999999999999987 8999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|. .+.+.+++..+.+.|+.+|..+++.|+.+|++.
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
|++++|.++|+.|.. +|..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999965 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
..|.+.|+.||..+|++|+.+|++.|+. ++|.++|+.|.+ +|..+||.||.+|++.|+.++|+++|++|.+.|+.
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~-~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRM-EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCH-HHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999887 889999999964 69999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMS-EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999986 599999999999999999999999999999865 578999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 620 (686)
+.+|...|+++.|..+++++.+ +.|+ ..+|..|++.|++.|++++|.+++++|.+.|+..
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999974 5664 7799999999999999999999999999999753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-27 Score=278.17 Aligned_cols=503 Identities=15% Similarity=0.080 Sum_probs=354.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..+...+.+.|++++|+++|+.+....|. +...+..++..+...|++++|+..|+.+..... ........++
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 438 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPE--NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLI 438 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHH
Confidence 3444555555566666666666666666555443 234555555556666666666666665544322 3344455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
..+.+.|++++|+++++.+.... +.+..+|..+...+...|+ +++|.+.|+++.+... .+...+..+...+...|++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCH
Confidence 66666666666766666665542 3456677777777777777 7888888887776542 3456667777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
++|.+.++.+...+ +.+..++..+...+.+.|++++|..+|+++...+.. +...+..++..+...|++++|..+++.+
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888877764 336777777888888888888888888887765432 5556777788888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044251 403 QDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI 482 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 482 (686)
.+.. ..+...+..+...+...|+. ++|...|+.+.+..+. +...+..+..+|.+.|++++|..+|+++.+. .+.+.
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 669 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDL-NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNT 669 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH
Confidence 7653 34667778888888887776 7788888888776533 5667778888888888888888888888774 33456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
.++..++..+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ |+..++..++.++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 788888888888888888888888888776 5677788888888889999999999999888764 4446777888889
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchh
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRR 642 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~ 642 (686)
.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|.++|+++++.. .+++.++..++.++......+...
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~ 824 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALE 824 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999988753 4468888889999999999999999999998865 345667777666653222111111
Q ss_pred hhHHHHH---------HHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 643 DKSAILG---------IINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 643 ~~~~~~~---------~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
.....+. ...+......|+.++|+..|.++.+.+|.++.+
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Confidence 1111100 011222345678899999999999999987654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-27 Score=277.82 Aligned_cols=462 Identities=16% Similarity=0.101 Sum_probs=249.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
++..+.+.|++++|+.+++.+....|. ++..+..++.++...|++++|...|+++.... +.+...+..++..+...|
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG 513 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC
Confidence 334444444444555444444443332 22445555555555555555555555544322 234444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|.+.|+++...+ +.+..++..+...+...|+ .++|..+++++.+.+. .+...+..++..+.+.|++++|..++
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555554432 2334455555555555554 5555555555554432 23444555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
+.+.+. .+.+...|..+..+|...|++++|...|+.+.+.... +...+..+..++...|++++|..+++++.+.. ..
T Consensus 591 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 591 NEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 555543 2334555555555555556666666655555544221 34445555555555566666666655555432 12
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+...+..+...+...|+. +.|..+++.+...++. +...+..+...+...|++++|...|+.+... .|+..++..++
T Consensus 668 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 743 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRT-ESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLH 743 (899)
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHH
Confidence 344555555555555544 5556666555554432 4445555555566666666666666665553 23334555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
.++.+.|++++|.+.++.+++.. +.+..+++.+...|...|++++|..+|+++.+.. +.+..+++.++..+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 56666666666666666665544 4455556666666666666666666666665554 3355566666666666666 5
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHH
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAIL 648 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~ 648 (686)
+|+.+++++... .| +..++..+..++...|++++|..+++++++.+.. ++.++..++.++
T Consensus 821 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~---------------- 881 (899)
T TIGR02917 821 RALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALAL---------------- 881 (899)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH----------------
Confidence 566666666543 22 3445555555666666666666666666655422 455555554444
Q ss_pred HHHHhcccchhhcccchhHHHHHHHh
Q 044251 649 GIINSKMGMVKAKKKGKKDEFWKYKK 674 (686)
Q Consensus 649 ~~~~~~~~~~~~~~~~a~~~f~~~~~ 674 (686)
...|+.++|.++|.+|++
T Consensus 882 --------~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 882 --------LATGRKAEARKELDKLLN 899 (899)
T ss_pred --------HHcCCHHHHHHHHHHHhC
Confidence 245678899999888763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-22 Score=199.98 Aligned_cols=444 Identities=17% Similarity=0.141 Sum_probs=362.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
....++..+.+.|+|.+|+++-..+.+.+|... .....+..++....+++.-...-..... ..+.-..+|..+.+.+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~--~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT--ERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcc--cceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHH
Confidence 355778899999999999999999988877553 3444455566666666654332222222 2234678999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEV-VGALMKSFCDEGLKN 323 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~ 323 (686)
-..|++++|+.+++.+.+. .| ....|..+..++...|+ .+.|.+.|.+.++.+ |+... .+.+...+-..|+++
T Consensus 127 kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~-~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGD-LELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCC-CcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccc
Confidence 9999999999999999987 45 46789999999999998 899999999999864 55443 344555556689999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
+|...+.+.++... --.+.|..|...+-.+|+...|++.|++..+. .|+ ...|..|.++|...+.+++|...|.+.
T Consensus 202 ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 202 EAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 99999999888743 35678999999999999999999999999875 344 347888999999999999999999988
Q ss_pred HHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 403 QDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 403 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
... .|+ ...+..+...|...|.. +.|+..|++..+..+. =...|+.|..++-..|++.+|...|.+.+.. .+--
T Consensus 279 l~l--rpn~A~a~gNla~iYyeqG~l-dlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~h 353 (966)
T KOG4626|consen 279 LNL--RPNHAVAHGNLACIYYEQGLL-DLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNH 353 (966)
T ss_pred Hhc--CCcchhhccceEEEEeccccH-HHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCcc
Confidence 765 454 56677777778888776 9999999999887433 3678999999999999999999999999985 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMTYNMLMN 560 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~ 560 (686)
....+.|...+...|.++.|..+|...++.. +.-....|.|...|-.+|++++|+..+++.+.. .|+ ...|+.+..
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGn 430 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcch
Confidence 4788999999999999999999999999765 455678999999999999999999999998875 555 678999999
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEKLRSIL 632 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l 632 (686)
.|...|+.+.|++.+.++.. +.|. ...++.|...|...|+..+|++-++++++ ++||. ..|-.++..+
T Consensus 431 t~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 99999999999999999985 5776 67899999999999999999999999997 45765 3444444433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-20 Score=215.36 Aligned_cols=489 Identities=15% Similarity=0.097 Sum_probs=292.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
....++.+...|++++|++.|+.+....|.... .............|+.++|++.|+++.... +.+...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~-la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELD-LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChH-HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 355567788899999999999999887654432 111122222335688999999999988743 467888889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCC------------------C--------------CCHHHH---------------------
Q 044251 247 WCGRYDDAWKAYEAMEANNV------------------R--------------PDHVTC--------------------- 273 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~------------------~--------------p~~~~~--------------------- 273 (686)
..|++++|++.|+++..... . |+....
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 99999999999888754310 0 110000
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH--------
Q 044251 274 SIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN-AIVY-------- 344 (686)
Q Consensus 274 ~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~-------- 344 (686)
..+...+...|+ +++|+..|++.++... -+..++..+...+.+.|++++|...|++..+...... ...|
T Consensus 273 ~~~G~~~~~~g~-~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 RAQGLAAVDSGQ-GGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 011223455677 8999999999988653 3678888899999999999999999999887643321 1112
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 345 ----NTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 345 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
..+...+.+.|++++|+..|+++.+.... +...+..+..++...|++++|++.|+++.+.... +...+..+...
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 12244667889999999999998887433 5567777889999999999999999998875322 33344444433
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCC--------CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIK--------PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF 492 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 492 (686)
|.. ++. ++|..+++.+...... .....+..+...+...|++++|+..|++.++.. +-+...+..+...|
T Consensus 429 ~~~-~~~-~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 429 YRQ-QSP-EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHh-cCH-HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 322 122 4444444332211000 001123334444444455555555555444421 11233444444444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHH--------------------------------------------HHHHHHH
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEGTRVTFN--------------------------------------------ILLDGFA 528 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~ 528 (686)
...|++++|...++++++.. +.+...+. .+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44555555555544444332 11221111 2233444
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
..|+.++|..+++. .+.+...+..+...+.+.|++++|+..|++..+. .| +...+..++.++...|++++|+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555666555551 1345566677777788888888888888887764 34 5677777788888888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhhhhhc---------------chh-hhHHHHHHHHhcccchhhcccchhHHHH
Q 044251 608 FYHKQMVKSGQVPD-VKSYEKLRSILDVKVATK---------------NRR-DKSAILGIINSKMGMVKAKKKGKKDEFW 670 (686)
Q Consensus 608 ~~~~~m~~~g~~p~-~~~~~~l~~~l~a~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~f~ 670 (686)
+.++++.+.. |+ ..++..++.++....... ... ...+.+-...+......|+.++|+..|.
T Consensus 658 ~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 658 AQLAKLPATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHhccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888776542 33 344444444442211000 000 0011111111333446678889999999
Q ss_pred HHHh
Q 044251 671 KYKK 674 (686)
Q Consensus 671 ~~~~ 674 (686)
+++.
T Consensus 736 ~Al~ 739 (1157)
T PRK11447 736 DAMV 739 (1157)
T ss_pred HHHh
Confidence 9985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-19 Score=211.99 Aligned_cols=499 Identities=11% Similarity=0.071 Sum_probs=328.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHH--------------HHHHHHHHHccCChhHHHHHHHhccc
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRA--------------CSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
+++.+..++..+.+.|++++|.+.++.+.+..|....... ...++..+.+.|++++|++.|+.+..
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 6777888889999999999999999999998876643221 23345578889999999999999887
Q ss_pred CCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----
Q 044251 229 SKEFRDAH-VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK---- 303 (686)
Q Consensus 229 ~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~---- 303 (686)
... ++.. ....+.......|++++|++.|+++.+.. +-+...+..+...+...|+ .++|++.++++.+....
T Consensus 141 ~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~-~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 141 GAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR-RDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred CCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCchHHH
Confidence 443 4432 22222222334589999999999998773 3355667777788888887 89999999988653210
Q ss_pred ------------CCHH---HHH----------------------------------HHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 304 ------------LSQE---VVG----------------------------------ALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 304 ------------~~~~---~~~----------------------------------~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
++.. .+. .....+...|++++|...|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0000 000 112345566777778877777777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHH
Q 044251 335 KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP-TSATF------------NILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 335 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
.. +.+..++..|..+|.+.|++++|+..|++..+..... ....| ..+...+.+.|++++|+..|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 63 3366777777777777888888888877777653321 11111 1223455677778888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK-- 479 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 479 (686)
+.+... .+...+..+...+...|+. ++|++.|+++.+..+. +...+..+...|. .++.++|+.+++.+......
T Consensus 377 Al~~~P-~~~~a~~~Lg~~~~~~g~~-~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 377 ARQVDN-TDSYAVLGLGDVAMARKDY-AAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 776532 2445555566667666665 6777777777766433 3445555555553 35667777776654321100
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 480 ------PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLM 553 (686)
Q Consensus 480 ------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 553 (686)
.....+..+...+...|++++|++.++++++.. +.+..++..+...|.+.|++++|...++++.+.. +.+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 011234456677788999999999999999876 5577788889999999999999999999988754 22444
Q ss_pred HHHHHHHHHH--------------------------------------------hcCCccHHHHHHHHHHHCCCCCCHHH
Q 044251 554 TYNMLMNAYG--------------------------------------------RGGQTSKLPQLLKEMATLNIKPDSVT 589 (686)
Q Consensus 554 ~~~~li~~~~--------------------------------------------~~g~~~~A~~l~~~m~~~g~~pd~~~ 589 (686)
.+..+...+. ..|+.++|..+++ ..+.+...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchH
Confidence 4433333333 4444455554444 12346677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhc--------------chhhhHHHHHHHHhcc
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATK--------------NRRDKSAILGIINSKM 655 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~--------------~~~~~~~~~~~~~~~~ 655 (686)
+..+...+.+.|++++|+..++++++.. ..+...+..++.++....... +.......++. .
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~----~ 680 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL----A 680 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH----H
Confidence 8889999999999999999999999864 234566666776663221110 11111111122 2
Q ss_pred cchhhcccchhHHHHHHHhhCCCCcc
Q 044251 656 GMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 656 ~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
....|+.++|.+.|.+++...|+++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 23556889999999999999887664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=189.81 Aligned_cols=408 Identities=15% Similarity=0.127 Sum_probs=332.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYD 252 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (686)
.+.+..+++.....-....+..|.. .++|..++.++-..|++++|+.+++.+.+..+ ..+..|..+..++...|+.+
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~~q~--ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKNPQG--AEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhcccchhhhhhhhhhhhhccchH--HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCc
Confidence 3444556666666555555555433 38899999999999999999999999887543 67889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 253 DAWKAYEAMEANNVRPDHVTCSIMITA-MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME 331 (686)
Q Consensus 253 ~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 331 (686)
.|...|.+.... .|+.....+-+.. +...|+ +.+|...|.+.++.... -...|+.|...+-..|++..|++.|++
T Consensus 168 ~a~~~~~~alql--nP~l~ca~s~lgnLlka~Gr-l~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 168 LAVQCFFEALQL--NPDLYCARSDLGNLLKAEGR-LEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred ccHHHHHHHHhc--CcchhhhhcchhHHHHhhcc-cchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHH
Confidence 999999998876 6776655544444 444676 89999999998876432 345788888999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN- 410 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~- 410 (686)
.++... .-...|-.|...|...+.+++|+..|......... ..+.+..|.-+|..+|+++.|+..|++.++. .|+
T Consensus 244 AvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F 319 (966)
T KOG4626|consen 244 AVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNF 319 (966)
T ss_pred hhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCc
Confidence 988732 24678999999999999999999999888765322 4557888888899999999999999999875 454
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044251 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALL 489 (686)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll 489 (686)
...|+.|..++...|+. .+|.+.|.+.....+. ...+.+.|...|...|.+++|..+|....+ +.|.. ..++.|.
T Consensus 320 ~~Ay~NlanALkd~G~V-~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSV-TEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLA 395 (966)
T ss_pred hHHHhHHHHHHHhccch-HHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHH
Confidence 67799999999888877 7799999998887544 567888899999999999999999999988 55554 6788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
..|-+.|++++|+..|++.++.. +.-...|+.+...|-..|+.+.|.+.+.+.+..+ +--...++.|...|...|++.
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcH
Confidence 99999999999999999999775 4457789999999999999999999999988765 224678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPD-SVTYSTMIYAFVR 599 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~ 599 (686)
+|++-+++.+. ++|| +..|-.++.++.-
T Consensus 474 ~AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 474 EAIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 99999999995 6887 6677777665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-17 Score=183.63 Aligned_cols=430 Identities=11% Similarity=0.004 Sum_probs=305.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+......+...|++++|+..|+.++...|. +..|..+..+|.+.|++++|+..++...+.. +.+..+|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---PVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4556788889999999999999999998774 4788999999999999999999999988744 36788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEA 325 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (686)
...|++++|+.-|......+ ..+......++..+.. ..+.......++... .+...+..+.. +.........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~-----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK-----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH-----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcc
Confidence 99999999999888775542 1122222222221111 122333333333321 11112222222 2111111111
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 326 LIIQMEMEKKGIPSN-AIVYNTLINA---YCKSNQLEEAEGLFQEMKTKG-LKP-TSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..-+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....|+.+..++...|++++|...+
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111111 111 0111111111 123478999999999998764 233 3457888888889999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 400 LELQDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 400 ~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
++..+. .|+ ...|..+...+...|+. ++|...|+.+.+..+. +...|..+...+...|++++|+..|++.+...
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDP-DKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 998876 343 55677777777777777 8899999998887544 67888899999999999999999999998852
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL------ 552 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------ 552 (686)
+.+...+..+..++.+.|++++|+..++..++.. +.+..+++.+...+...|++++|...|++........+.
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 3356778888889999999999999999998765 667889999999999999999999999998876432111
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 553 MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 553 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
..++..+..+...|++++|.+++++.... .| +..++..++.++...|++++|+.+|+++.+..
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 12233333444579999999999998875 45 45678899999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-19 Score=187.20 Aligned_cols=300 Identities=16% Similarity=0.163 Sum_probs=200.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT---SATFNILMDAYSRRMQP 392 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 392 (686)
+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 22344555555555555555555555555554321111 12344455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC----hhhHhhhHHHHHhcCCHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT----SHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 468 (686)
+.|..+|.++.+.. ..+...+..+...+.+.|+. ++|.+.++.+.+.+..+. ...+..++..+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDW-QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchH-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555554431 22344555555555555444 455555555554433221 1234566777888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999888752 334567778888889999999999999998876533335678888999999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR---VRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|++.++.|++.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 56566788899999999999999999998864 7888888888877664 558899999999999888777775
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-17 Score=182.01 Aligned_cols=486 Identities=10% Similarity=0.012 Sum_probs=287.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
...-+......+...|++++|+..|+.+++..|.. +.++..++..|.+.|+.++|+..+++.....+ .|...+..+.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La 119 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN--IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHH
Confidence 34444555556666699999999999999998876 58889999999999999999999999887433 5666666653
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH--------HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDH-VTCSIMITA--------MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL- 312 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~--------~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l- 312 (686)
.. +++++|..+++++.+. .|+. ..+..+... |.+ .++|.+.++ .......|+..+....
T Consensus 120 ~i----~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~ 188 (987)
T PRK09782 120 AI----PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDL 188 (987)
T ss_pred Hh----ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHH
Confidence 32 8888999999999876 4543 333333333 333 455555555 3333344445555554
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
.+.|.+.|++++|+.++..+.+.+.. +......|..+|.. .++ +++..+++.. ++-+...+..++..|.+.|+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCC
Confidence 78888888888888888888877533 45555556666666 355 6666664431 22356666667777777777
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHH------------------------------HHHh-------------------
Q 044251 392 PEIVEKLLLELQDMGLE-PNAKSYTCL------------------------------ISAY------------------- 421 (686)
Q Consensus 392 ~~~a~~~~~~m~~~~~~-p~~~~~~~l------------------------------l~~~------------------- 421 (686)
.++|.++++++...-.. |...++.-+ +..+
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 77776666665432110 111110000 0000
Q ss_pred --------------------------------------------cCCCChHHHHHHHHHHHHHc----------------
Q 044251 422 --------------------------------------------GRPRKMSDMAADAFLRMKRV---------------- 441 (686)
Q Consensus 422 --------------------------------------------~~~~~~~~~A~~~~~~~~~~---------------- 441 (686)
...|+. ++|..+|+.....
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS-REAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 001111 2222222222110
Q ss_pred -----------------------------------------------CC-CC--ChhhHhhhHHHHHhcCCHHHHHHHHH
Q 044251 442 -----------------------------------------------GI-KP--TSHSYTALIHAYSVGGWHEKAYAAFE 471 (686)
Q Consensus 442 -----------------------------------------------~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (686)
+. .+ +...|..+..++.. ++.++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 00 01 23334444444444 55666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 044251 472 NMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT 551 (686)
Q Consensus 472 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 551 (686)
+.... .|+......+...+...|++++|...|+++... +++...+..+...+.+.|++++|...+++..+.. +.+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 65553 344443334444456777788888777776543 3333445556666777788888888887777654 223
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 044251 552 LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRS 630 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 630 (686)
...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|++++|...++++++.. |+ ...+..++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~ 651 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 333434444445568888888888887753 5677777777888888888888888888877654 44 344445554
Q ss_pred HHHhhh--------------hhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcccc
Q 044251 631 ILDVKV--------------ATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHA 683 (686)
Q Consensus 631 ~l~a~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~~ 683 (686)
++.... ..++.......++.. ....|+.++|+..|.++.+..|++.++.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a----l~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV----NQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 442211 111111111122222 2345567788888888888888776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-17 Score=181.36 Aligned_cols=415 Identities=11% Similarity=-0.015 Sum_probs=289.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
.+...+..+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4556677788999999999999998763 3678889999999999999999999999998763 335678888999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAE 361 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 361 (686)
..|+ +++|+..|..+...+...+.. ...++..+.. ..+........+.. +.+...+..+.. |......+...
T Consensus 206 ~lg~-~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGK-YADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCC-HHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 9998 999999888776553222222 2222222111 12223333333331 122222222222 22222222222
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhcCCCChHHHHHHHH
Q 044251 362 GLFQEMKTKGLKPTS-ATFNILMDA---YSRRMQPEIVEKLLLELQDMG-LEP-NAKSYTCLISAYGRPRKMSDMAADAF 435 (686)
Q Consensus 362 ~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~~A~~~~ 435 (686)
.-+....+. .+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|+. ++|...|
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~-~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH-LEALADL 354 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 212211111 1111 111111111 123578999999999998765 234 345566666777777776 8899999
Q ss_pred HHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044251 436 LRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG 515 (686)
Q Consensus 436 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 515 (686)
+...+..+. ....|..+...+...|++++|+..|+++++. .+.+..+|..+...+...|++++|...|++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 999887543 4668888999999999999999999999885 23457889999999999999999999999999876 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-----CHH-H
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-----DSV-T 589 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-~ 589 (686)
+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+..++...|++++|++.|++.....-.. +.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 77888889999999999999999999988764 4478899999999999999999999999998642111 111 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhh
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEKLRSILDVKV 636 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l~a~~ 636 (686)
+...+..+...|++++|.++++++++.. |+. ..+..++.++...+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcc
Confidence 2222223344799999999999998764 544 45777777774433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-19 Score=184.72 Aligned_cols=297 Identities=16% Similarity=0.120 Sum_probs=141.3
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCCH
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD---HVTCSIMITAMRKNGRSA 287 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~ 287 (686)
...|++++|+..|+++.... +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+ +
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~-~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL-L 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC-H
Confidence 34444444444444444322 13344444444444444444444444444443211111 1233444444444444 4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 044251 288 KEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGL 363 (686)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~ 363 (686)
+.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45555555444431 12334444444555555555555555555444332211 11233444455555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC
Q 044251 364 FQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI 443 (686)
Q Consensus 364 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~ 443 (686)
|+++.+.... +...+..++.++.+.|++++|.++++++.+.+.......+..+..+|...|+. ++|...++.+.+..
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~A~~~l~~~~~~~- 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE-AEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC-
Confidence 5555543211 23344445555555555555555555555432221223444555555555444 55555555555543
Q ss_pred CCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCC
Q 044251 444 KPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRR---SGDTGMMMKIWKLMMSEKVEGT 516 (686)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 516 (686)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+++.++.++
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 33334455566666666666666666666553 4555556555555443 3356666666666665444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-17 Score=180.30 Aligned_cols=334 Identities=11% Similarity=-0.001 Sum_probs=244.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
....++..+.+.|++++|+.+++.++...|... ..+..++.++...|++++|+..|+++.... +.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGR--DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch--hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344567888899999999999999998877664 677777777778999999999999888743 36778888888999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEA 325 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (686)
.+.|++++|.+.|+++.... +.+...+..+...+...|+ +++|...++.+...... +...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999988752 3346677778888888888 88899988888766443 33333333 347788889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 044251 326 LIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI----VEKLLLE 401 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 401 (686)
...++.+.+....++...+..+...+.+.|++++|+..|+++.+.... +...+..+..++...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 888888877644444555556677788888888898888888876433 56677778888888888875 6777777
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
..+... .+...+..+...+...|+. ++|...+++.....+. +...+..+..+|.+.|++++|+..|+.+... .|+
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~~~g~~-~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALIRTGQN-EKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 776532 2455666666777777666 6777777777776543 4555666777777788888888887777764 333
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 482 I-ETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 482 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
. ..+..+..++...|+.++|...|+.+++..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 333334566777778888887777777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-17 Score=185.78 Aligned_cols=423 Identities=12% Similarity=0.076 Sum_probs=262.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
..++++......+......|+.++|++++..+....| .....+..++.++.+.|++++|..+|++..... +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3566788888888888899999999988888876433 334678888888889999999999998877643 3567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+ .++|+..++++++..+. +...+..+..++..
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~-~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~ 162 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGR-HWDELRAMTQALPRAPQ-TQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 888888889999999999999887762 33445 7777777888887 88899999988887543 56666677778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HH---
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNA------IVYNTLINAYC-----KSNQL---EEAEGLFQEMKTK-GLKPTSA-TF--- 379 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~--- 379 (686)
.|..+.|+..++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 8888888888776553 1111 01111111111 11222 4455555555532 1112111 00
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 380 -NILMDAYSRRMQPEIVEKLLLELQDMGLE-PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 380 -~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
...+.++...|++++|+..|+.+.+.+.. |+. ....+..+|
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-------------------------------------a~~~la~~y 282 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-------------------------------------AQRWVASAY 282 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-------------------------------------HHHHHHHHH
Confidence 00122223445555555555555443321 211 111123344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCC---HHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKP---SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV-----------EGT---RVTF 520 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~ 520 (686)
...|++++|+.+|+++....... .......+..++...|++++|..+++.+.+... .|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 44444444444444443321100 012233333344444555555555444443320 122 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVR 599 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~ 599 (686)
..+...+...|++++|+++++++.... +.+...+..++..+...|++++|++.+++.... .|| ...+..++..+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 566777778888888888888887665 446778888888888888888888888888863 564 6666777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
.|++++|..+++++++. .|+......+-+.++
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRLARARD 471 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 88888888888888874 366666666655553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-16 Score=179.77 Aligned_cols=389 Identities=10% Similarity=0.039 Sum_probs=260.6
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 197 LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276 (686)
Q Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 276 (686)
..++.-..-.+.+....|+.++|++++...... .+.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345566666677777888888888888777642 23556677888888888888888888888876652 3345556666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 356 (686)
...+...|+ .++|+..++++++... .+.. +..+..++...|+.++|+..++++.+..+ .+...+..+..++...|.
T Consensus 90 a~~l~~~g~-~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQ-YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 677777777 7888888888877632 2445 77777777778888888888888777643 356666667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh--HHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM--SDMAADA 434 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~~A~~~ 434 (686)
.+.|+..++.... .|+. ..-+ +...+...++... .+ .....++. .+.|+..
T Consensus 166 ~e~Al~~l~~~~~---~p~~---~~~l-------~~~~~~~~~r~~~----~~----------~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 166 SAPALGAIDDANL---TPAE---KRDL-------EADAAAELVRLSF----MP----------TRSEKERYAIADRALAQ 218 (765)
T ss_pred hHHHHHHHHhCCC---CHHH---HHHH-------HHHHHHHHHHhhc----cc----------ccChhHHHHHHHHHHHH
Confidence 7777777765543 2220 0000 0000001000000 00 00011111 2557777
Q ss_pred HHHHHHc-CCCCChh-hH----hhhHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 435 FLRMKRV-GIKPTSH-SY----TALIHAYSVGGWHEKAYAAFENMLREEIK-PSIETYTALLDAFRRSGDTGMMMKIWKL 507 (686)
Q Consensus 435 ~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 507 (686)
++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 7777754 1122221 11 11134556779999999999999887532 332 223357789999999999999999
Q ss_pred HHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCccH
Q 044251 508 MMSEKVEG---TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL-----------QPT---LMTYNMLMNAYGRGGQTSK 570 (686)
Q Consensus 508 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~ 570 (686)
+++..... .......+..++...|++++|..+++++..... .|+ ...+..+...+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 88654221 135567777788999999999999999886531 123 2456678889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 571 LPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 571 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 622 (686)
|+++++++... .+-+...+..++.++...|++++|++.++++++.. |+.
T Consensus 378 A~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 378 AEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC
Confidence 99999999875 23368889999999999999999999999998754 764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-17 Score=177.52 Aligned_cols=364 Identities=11% Similarity=0.026 Sum_probs=232.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEP-SLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRY 251 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (686)
.+.++.+++.---+|....+... ...+......++..+.+.|++++|+.+++...... +.+...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 34555555543333333332211 11122334445556677788888888877776633 35566666666777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 252 DDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME 331 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 331 (686)
++|...|+++.... +.+...+..+...+...|+ +++|...++++++... .+...+..+...+...|++++|...++.
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~-~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ-YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 88888888877652 3344566666677777777 7888888888777532 2566777777778888888888887777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044251 332 MEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA 411 (686)
Q Consensus 332 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 411 (686)
+...... +...+..++ .+...|++++|..+++.+......++...+..++.++...|++++|...++.+..... .+.
T Consensus 170 ~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~ 246 (656)
T PRK15174 170 QAQEVPP-RGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGA 246 (656)
T ss_pred HHHhCCC-CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH
Confidence 7665333 333443333 3667788888888887776654333444455556677777888888888877776532 245
Q ss_pred HHHHHHHHHhcCCCChHH---HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSD---MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTAL 488 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 488 (686)
..+..+...+...|+..+ .|...|++.....+. +...+..+...+.+.|++++|+..+++..... +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 556666666666666532 367777777766543 56677777777777777777777777777642 2344556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
..++...|++++|...++.+.+.+ +.+...+..+..++...|+.++|...|++..+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777777777777777777654 223333444556667777777777777776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-15 Score=169.25 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+...+..+..++.. ++. ++|...+....... |+......+...+...|++++|...|+++... +|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~-~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLP-GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHH
Confidence 34445555444444 343 45666555555443 33333333333445666666666666665442 33333344445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
.++.+.|+.+.|...++..++.. +.....+..+...+...|++++|...+++..+.. |+...|..+..++.+.|+++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHH
Confidence 55555666666666666555543 2222223233333334455555555555555432 34555555555555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|+..+++.... .| +...+..+..++...|++++|+..++++++.
T Consensus 627 eA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 627 AAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555543 33 3444555555555555555555555555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-15 Score=164.69 Aligned_cols=453 Identities=12% Similarity=0.069 Sum_probs=334.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
.+......+-...+.|+++.|+..|+.+++..|... ....-++.+++..|+.++|+..+++... ..+.......+++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHH
Confidence 444555667778899999999999999999887652 1222778888899999999999999884 2224555556667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
..+...|++++|+++|+++.+.. +-+...+..++..+...++ .++|++.++++.... |+...+..++..+...++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q-~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGR-GGVVLKQATELAERD--PTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC-HHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchH
Confidence 79999999999999999998873 3345667777788888888 999999999998764 4555555555555556777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF------NILMDAY-----SRRMQ 391 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~ll~~~-----~~~~~ 391 (686)
.+|++.++++.+.. +.+...+..++.++.+.|-...|+++..+-... +.+....+ ..+++.- ....+
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 67999999999984 447888899999999999999998877654322 11111111 1111110 01122
Q ss_pred H---HHHHHHHHHHHHc-CCCCCH-HHH-H---HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCC
Q 044251 392 P---EIVEKLLLELQDM-GLEPNA-KSY-T---CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGW 462 (686)
Q Consensus 392 ~---~~a~~~~~~m~~~-~~~p~~-~~~-~---~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 462 (686)
+ +.|+.-++.+... +..|.. ..| . -.+.++...+++ .++++.|+.+...+......+-..+..+|...++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~-~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT-ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 2 3455555555432 222322 111 2 234455666666 7899999999988866556688889999999999
Q ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CC--C-HHHHHHH
Q 044251 463 HEKAYAAFENMLREE-----IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV-----------EG--T-RVTFNIL 523 (686)
Q Consensus 463 ~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~-~~~~~~l 523 (686)
+++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... .| | ...+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 999999999997643 133444467888899999999999999999997421 12 2 2244556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~ 602 (686)
+..+...|++.+|++.++++.... +-|......+...+...|++.+|+++++.+.. +.| +..+....+.++...|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhh
Confidence 777889999999999999998876 55999999999999999999999999987775 366 47778888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 603 FKRAFFYHKQMVKSGQVPDVKSYEKLRS 630 (686)
Q Consensus 603 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 630 (686)
+++|..+.+.++.. .|+......+-.
T Consensus 500 ~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 500 WHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 99999999999875 376665544433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-16 Score=161.75 Aligned_cols=504 Identities=11% Similarity=0.024 Sum_probs=356.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHH
Q 044251 159 IGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEP-SLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHV 237 (686)
Q Consensus 159 ~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 237 (686)
..+-++...+.+.+.+.-.|+++.+..+.+.+..... ...-.+.|..++++|-..|++++|...|..........-+..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 4556778888999999999999999999999887632 122346788899999999999999999987766433122556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGR---SAKEAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~---~~~~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
+..|...+.+.|+++.+...|+...+. .||. .+...|...|+..+. ..+.|..++.+..+.. +.|...|..+.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 677889999999999999999998776 4554 555555555554431 1577888888877764 44777888887
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHH
Q 044251 314 KSFCDEGLKNEALIIQMEM----EKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---GLKPTS------ATFN 380 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~ 380 (686)
..+-...-+.. +..|..+ ...+-.+.+...|.+.......|+++.|...|...+.. -..++. .+-.
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 77765544433 6655543 45566678899999999999999999999999887665 122232 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhc
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVG 460 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (686)
.+..++-..++.+.|.+.|..+.+. .|+-.....-+.+..+......+|..++.......- .+...+..+...+.+.
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhh
Confidence 4777777888999999999999876 455443333333333333333668888888776543 3666777777788888
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 461 GWHEKAYAAFENMLREE-IKPSIETYTALLDAFRR------------SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
..+..|..-|......- ..+|..+.-.|.+.|.. .+..++|+++|.++++.. +-|..+-|.+.-.+
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhh
Confidence 88888888777665542 23566666666665542 235678999999999876 67888888899899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPDSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A 606 (686)
+..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+.....-. .-+..+...|.+++.+.|.+.+|
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999987653 3667899999999999999999999998776533 33688999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhh-hhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCC
Q 044251 607 FFYHKQMVKSGQVPDVKSYEKLRSILDVKV-ATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPR 678 (686)
Q Consensus 607 ~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~ 678 (686)
.+.+..++.....-....++..+-+..... .....+ .....+.. .-+.-++|..+|.++-.-++.
T Consensus 736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k---~t~eev~~----a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK---RTLEEVLE----AVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc---ccHHHHHH----HHHHHHHHHHHHHHHHhcCCC
Confidence 999998887543222333332222221110 000001 11111211 112457888888888777664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-17 Score=155.60 Aligned_cols=529 Identities=15% Similarity=0.104 Sum_probs=345.8
Q ss_pred hhhccccCCCCCCCCCchhhhhhccCchhhhhhcccCCCCCCCccccccccccccccccccCCcCCCCCCCCccchhhhh
Q 044251 66 PFLQQQRQDPNPQNENHEEDEEEEAIDPLLKFFKSQTPTQDPPALGKLSLQKNRRSSWHLSPHVNSPNQSESDINDISLE 145 (686)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (686)
.+++...++.++|+..+.|.+..+ ....+... ......++++.+.+...++.+-..+ ....+..++.+
T Consensus 128 spleak~ed~peek~kqle~ev~e---ll~es~ia-----n~~~~~k~aldkakdagrker~lvk-~req~~~~e~i--- 195 (840)
T KOG2003|consen 128 SPLEAKGEDGPEEKCKQLEKEVME---LLEESCIA-----NECGDFKEALDKAKDAGRKERALVK-HREQQGLPEMI--- 195 (840)
T ss_pred CchhhccCCChHHHHHHHHHHHHH---HHHHHHHH-----hhhhhHHHHHHHHHhcchhHHHHHH-HHHhccchhhc---
Confidence 345556667777777776665443 11111211 1223345677777776666653333 11111111111
Q ss_pred HHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHh
Q 044251 146 DEAKQQMGSLPDGIGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKN 225 (686)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (686)
+-.++-..+..++..|.....+.+|+-.|+-+.+..-+...-..--.+..++.+.+.+.+|++.|+-
T Consensus 196 -------------nldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrm 262 (840)
T KOG2003|consen 196 -------------NLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRM 262 (840)
T ss_pred -------------cccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHH
Confidence 2345777888899999999999999999999998855544334444567778899999999998875
Q ss_pred cccC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 044251 226 LPQS----KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVT-CSIMITAMRKNGRSAKEAWEFFEKMNRK 300 (686)
Q Consensus 226 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 300 (686)
.... .........+.+...+.+.|+++.|+..|+...+. .|+..+ +|..|.++ .-|+ .+...+.|.+|+..
T Consensus 263 aldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f-~i~d-~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 263 ALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF-AIGD-AEKMKEAFQKLIDI 338 (840)
T ss_pred HHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe-ecCc-HHHHHHHHHHHhcC
Confidence 4442 11123567788888899999999999999998776 688755 55545444 4455 78999999999875
Q ss_pred CCC------------CCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCCCCCCHH-------------------
Q 044251 301 GVK------------LSQEVVGALM-----KSFCDEGL--KNEALIIQMEMEKKGIPSNAI------------------- 342 (686)
Q Consensus 301 ~~~------------~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~------------------- 342 (686)
... |+....+..+ +..-+.+. .+.+.-.-.++...-+.|+-.
T Consensus 339 p~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la 418 (840)
T KOG2003|consen 339 PGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA 418 (840)
T ss_pred CCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh
Confidence 322 2333333222 22222221 112211111111111112110
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 343 --VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAY--SRRMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418 (686)
Q Consensus 343 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 418 (686)
.-..-...|.++|+++.|+++++-+....-+.-...-+.|...+ ....++..|..+-+...... .-+......--
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkg 497 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKG 497 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCC
Confidence 01112345778999999999998887764332223333333222 22446677777766655321 11222222222
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDT 498 (686)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 498 (686)
......|++ ++|.+.|++.......-....|| +...+-..|++++|+++|-++..- +..+...+..+...|....+.
T Consensus 498 n~~f~ngd~-dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 498 NIAFANGDL-DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred ceeeecCcH-HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 223345566 88999999988753222222333 344677889999999999887653 345778888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 499 GMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 499 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
..|++++.+.... ++.|+.+++-|.+.|-+.|+-..|++.+-+--.. ++-|..+...|...|....-+++++.+|+++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999888654 4778999999999999999999999987664333 4668999999999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 579 ATLNIKPDSVTYSTMIYAF-VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 579 ~~~g~~pd~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.- +.|+..-|..++..| .+.|++.+|+.+++...+. +.-|.....-|+++.
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 74 699999998888765 6789999999999998765 556777766666664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-14 Score=159.32 Aligned_cols=414 Identities=14% Similarity=0.073 Sum_probs=313.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
..++..+...|+.++|+.+++.+. .|..........++..+...|++++|+++|+++.+..+ .+..++..++..+..
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhh
Confidence 367888888999999999999999 45455556666667899999999999999999998544 678888899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
.++.++|++.++++... .|+...+..++..+...++ ..+|++.++++.+..+ -+...+..++.++.+.|-...|++
T Consensus 149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~-~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR-NYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999876 6776666444444444455 5569999999999853 378888999999999999999998
Q ss_pred HHHHHHHCCCCCCHHHH--HHHHHHHH---------HcCC---HHHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHH
Q 044251 328 IQMEMEKKGIPSNAIVY--NTLINAYC---------KSNQ---LEEAEGLFQEMKTK-GLKPTSA-----TFNILMDAYS 387 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~ 387 (686)
+...-... +.+....+ ...+.-.+ ..++ .+.|+.-++.+... +..|... ...-.+.++.
T Consensus 225 l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 225 LAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 77764432 11111111 00111111 1122 34566666666552 2223321 2234566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC-----CCChhhHhhhHHHHHhcCC
Q 044251 388 RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI-----KPTSHSYTALIHAYSVGGW 462 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 462 (686)
..++..++++.|+.|...+......+-..+..+|...+.. ++|..+|..+..... .++......|..+|...++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P-~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP-EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 8999999999999999888765667888899999988666 899999999876531 2234446788999999999
Q ss_pred HHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 463 HEKAYAAFENMLREEI-----------KPSI---ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 463 ~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
+++|..+++.+.+... .|+. ..+..++..+...|++.+|++.++.+.... |.|..+...+.+.+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999999987311 1222 345566778899999999999999998776 889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 594 (686)
..|.+.+|...++.+.... +-+..+...++.++...|++.+|..+.+.+.+. .|+......|-
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred hcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 9999999999998877664 447788888999999999999999999999864 67655443333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-13 Score=145.26 Aligned_cols=507 Identities=15% Similarity=0.069 Sum_probs=344.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
....+..+...|++++|.+++..+..+.|... .+|..|+.+|-.+|+.+++...+-...... +.|...|-.+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~--~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNP--IAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34456667777999999999999999987554 899999999999999999988776554432 367799999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVG----ALMKSFCDEGLK 322 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~ 322 (686)
+.|.++.|.-.|.+..... +++...+---...|-+.|. ...|.+-|.++.+...+.|..-+. ..++.+...++-
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999998874 4555555556677888898 899999999999886543433333 345667778888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------------------------
Q 044251 323 NEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP--------------------------- 374 (686)
Q Consensus 323 ~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------------------------- 374 (686)
+.|.+.++..... +-..+...++.++..|.+...++.|......+......+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999988887763 234466778899999999999999999888887622212
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhh
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMG--LEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTA 452 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 452 (686)
+...+ -++-++...+..+....+...+.+.. +.-+...|.-+..+|...|.. ..|+.+|..+......-+...|-.
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~-~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY-KEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH-HHHHHHHHHHhcCccccchhhhHH
Confidence 22221 12233344455555555555555555 333567788888888888776 779999998887755556778888
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCCHHHHHHHH
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS--------EKVEGTRVTFNILL 524 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~li 524 (686)
+..+|...|..++|.+.|+..+.. -+.+...-..|...+.+.|+.++|.+.+..+.. .+..|.........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 899999999999999999988874 233445566677778888999999888888542 22344445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC--------------------------------------------------CCC----
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIG--------------------------------------------------LQP---- 550 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~--------------------------------------------------~~p---- 550 (686)
+.+...|+.++=..+..+|+... ..+
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 56666666554333322221100 000
Q ss_pred -------CH----HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 551 -------TL----MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DS----VTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 551 -------~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
+. ..+.-++.++++.|++++|+.+...+....+.- +. ..-...+.++...+++..|..+++.|+
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00 123456677888899999999988887643211 22 233455667788899999999999988
Q ss_pred HC-CCCCCH---HHHHHHHHHHHhhhhh-----------cchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCC
Q 044251 615 KS-GQVPDV---KSYEKLRSILDVKVAT-----------KNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRT 679 (686)
Q Consensus 615 ~~-g~~p~~---~~~~~l~~~l~a~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~ 679 (686)
.. +..-++ ..|+...+.+...... ...+.....+..+.+..-+..+....|+..+-++...+|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 65 322222 2333233332110000 00011111223333444456667789999999999999998
Q ss_pred cc
Q 044251 680 QS 681 (686)
Q Consensus 680 ~~ 681 (686)
|=
T Consensus 774 Pl 775 (895)
T KOG2076|consen 774 PL 775 (895)
T ss_pred cH
Confidence 84
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-13 Score=145.87 Aligned_cols=302 Identities=14% Similarity=0.089 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+.--+......++|..|+.+|..++...|... +....-+...+.+.|+.+.|+..|.+..+..+ .++.++-+|...-
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHH
Confidence 333445556677899999999999888765442 24444556677788999998888888887433 3444444444444
Q ss_pred HHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 044251 246 FWCGR---YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK--LSQEVVGALMKSFCDEG 320 (686)
Q Consensus 246 ~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g 320 (686)
....+ +..++.++...-..+ .-+++..+.|..-+.-.|+ +..++.+...++..... .-...|-.+.++|-..|
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD-YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 44433 445555555543332 3455667777777777776 88888888887765321 12345777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM----QPEIVE 396 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~ 396 (686)
+++.|...|.+..+.....-+..+--|.++|.+.|+++.+...|+.+..... -+..|..+|...|+..+ ..+.|.
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 8888888887777664332245556677888888888888888888776532 24556666666666654 345555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMK----RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
.++....+.- ..|...|-.+...+-.. +. -.++.+|..+. ..+-.+.....|.+...+...|++++|...|..
T Consensus 401 ~~l~K~~~~~-~~d~~a~l~laql~e~~-d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 401 NVLGKVLEQT-PVDSEAWLELAQLLEQT-DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHhc-Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 5555555442 22455555555554443 22 12244443322 233334555666666666666666666666666
Q ss_pred HHH
Q 044251 473 MLR 475 (686)
Q Consensus 473 m~~ 475 (686)
.+.
T Consensus 478 A~~ 480 (1018)
T KOG2002|consen 478 ALG 480 (1018)
T ss_pred Hhh
Confidence 544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-14 Score=134.79 Aligned_cols=362 Identities=15% Similarity=0.116 Sum_probs=195.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
.+..+|..||.++++--..+.|.++|++..+...+.+..+||.+|.+-. +....+++.+|....+.||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 3555666666666666666666666666665555666666666665543 22335566666666666666666666
Q ss_pred HHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCC---C-CHHHH
Q 044251 313 MKSFCDEGLKNEA----LIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE-AEGLFQEMKT----KGLK---P-TSATF 379 (686)
Q Consensus 313 i~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~---p-~~~~~ 379 (686)
+....+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. +.++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 6666666655543 3556666666666666666666666666555433 3333333332 1111 1 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhh
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQDMG----LEPN---AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTA 452 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 452 (686)
...+..|.+..+.+.|.++..-+.... +.|+ ...|..+....|..... +....+|+.|.-.-+-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~-~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI-DVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccceecCCchhHHH
Confidence 555566666666666666555443210 1111 22334444444444232 445555555555544555555555
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-C
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ-G 531 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 531 (686)
++++..-.|.++-.-+++.+++..|..-+... .++++..+....+.|+...-..+-....++ -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 56666666666665566655555432211111 122222222222222211111111111110 1
Q ss_pred CHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHH
Q 044251 532 QYLEARD-VVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI----KPDSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 532 ~~~~A~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~~~~~li~~~~~~g~~~~A 606 (686)
++.++.+ --.++.+. .-.....+...-.+.+.|+.++|.++|.-....+- .|......-+++.-.+.++.-.|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1222222 12233333 33556677888888899999999999998865543 23444455677777888999999
Q ss_pred HHHHHHHHHCCC
Q 044251 607 FFYHKQMVKSGQ 618 (686)
Q Consensus 607 ~~~~~~m~~~g~ 618 (686)
...++.|...++
T Consensus 581 ~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 581 IEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHcCc
Confidence 999999977654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-13 Score=132.94 Aligned_cols=428 Identities=15% Similarity=0.201 Sum_probs=294.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc--cCChhH-HHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR--ARMGDD-LMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
+-.++.+|.+.++.-+|+.|.+.+ ...++..-..+.+.-+- ..++-- -.+-|-.|...|. .+..+| +
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--------K 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--------K 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--------c
Confidence 556677899999999999998764 34566666666554332 222221 2233444444333 344444 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
.|+..+ ++-+.. +-...+|..||.++|+... .+.|.++|++......+.+..+||.+|.+-.- ....+
T Consensus 192 ~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~-~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 192 SGAVAD---LLFETL----PKTDETVSIMIAGLCKFSS-LERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred cccHHH---HHHhhc----CCCchhHHHHHHHHHHHHh-HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 344333 333332 4456799999999999987 99999999999988889999999999876543 33378
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE----AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI-VEKLLLEL 402 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m 402 (686)
++.+|......||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.+++.+ +..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 99999999999999999999999999998875 56788899999999999999999999999888754 45555555
Q ss_pred HHc----CCC---C-CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC----CCCC---hhhHhhhHHHHHhcCCHHHHH
Q 044251 403 QDM----GLE---P-NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG----IKPT---SHSYTALIHAYSVGGWHEKAY 467 (686)
Q Consensus 403 ~~~----~~~---p-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~ 467 (686)
+.. .+. | |...|...+..|.+..+. +.|..+..-+.... +.|+ ..-|..+....|+....+.-+
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~-~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL-ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhH-HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 222 3 566677788888766554 66766665544321 1122 334667777888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 468 AAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 468 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
..|+.|.-.-+-|+..+...++++..-.+.++-.-++|..++..|...+... -++++..+.+..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k 482 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDK 482 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCC
Confidence 9999998887889999999999999999999999999999987764333222 223333333333
Q ss_pred CCCCHH---HHHHHHHHHHhcCCccHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 044251 548 LQPTLM---TYNMLMNAYGRGGQTSKLP-QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG-QVPDV 622 (686)
Q Consensus 548 ~~p~~~---~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 622 (686)
+.|+.. -+..+..-|+ -++.++. ..-.+|.+..+ .....+..+-.+.+.|..++|.+++....+.+ -.|-.
T Consensus 483 ~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred CCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 333322 2222222221 1122222 22345554433 45567777788899999999999999997664 45666
Q ss_pred HHHHHHHHHHHhhhhhcch
Q 044251 623 KSYEKLRSILDVKVATKNR 641 (686)
Q Consensus 623 ~~~~~l~~~l~a~~~~~~~ 641 (686)
...+.++++.++....++.
T Consensus 559 p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 559 PLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred cchhhHHHHHHHHHhcCCH
Confidence 7777788888765555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-11 Score=121.54 Aligned_cols=428 Identities=12% Similarity=0.038 Sum_probs=275.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
.....+.|..++.++.+--|... + |..+|++..-++.|.+++++..+ ..+-+..+|.+....--.+|+.+...
T Consensus 388 elE~~~darilL~rAveccp~s~--d----LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSM--D----LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHHhccchH--H----HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 33455668888888877654332 3 33455666677788888888776 45567888888888888888888887
Q ss_pred HHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 256 KAYEAM----EANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS--QEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 256 ~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
+++.+- ...|+..+...|-.-...|-..|- .-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags-v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGS-VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 776653 445777777777777777777765 6667777777776665432 346777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
...++. ++-+...|...+..--..|..++...+|++.... ++-....|-....-+-..|+...|..++....+....
T Consensus 540 a~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 540 AHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 777765 4446666766666666667777777777777665 2224445555555556667777777777776665332
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+...+...+......... +.|..+|.+.... .++...|.--+....-.+..++|+.++++.++. ++.-...|-.+.
T Consensus 617 seeiwlaavKle~en~e~-eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDEL-ERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccH-HHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHh
Confidence 455555556655555444 6677777666654 345555555555555566677777777766663 222234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
+.+.+.++.+.|...|..-.+. ++.....|-.|.+.-.+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 6666777777777666655533 35555566666666666667777777777665444 336666666666666777766
Q ss_pred HHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044251 570 KLPQLLKEMATL-----------------------------NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP 620 (686)
Q Consensus 570 ~A~~l~~~m~~~-----------------------------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 620 (686)
.|..+..++++. .+.-|+.+...+...++...+++.|.+.|.++++.+ |
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--P 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--C
Confidence 666665555432 123355666667777777778888888888887754 5
Q ss_pred CH
Q 044251 621 DV 622 (686)
Q Consensus 621 ~~ 622 (686)
|.
T Consensus 849 d~ 850 (913)
T KOG0495|consen 849 DN 850 (913)
T ss_pred cc
Confidence 44
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-11 Score=120.87 Aligned_cols=475 Identities=11% Similarity=0.024 Sum_probs=362.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYE 259 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (686)
...-.++++.+++.-|... ..|...+ .....+.|+.++.+..+ -++.+...|.+ |++..-|+.|.++++
T Consensus 362 ~~~K~RVlRKALe~iP~sv--~LWKaAV----elE~~~darilL~rAve-ccp~s~dLwlA----larLetYenAkkvLN 430 (913)
T KOG0495|consen 362 TKNKKRVLRKALEHIPRSV--RLWKAAV----ELEEPEDARILLERAVE-CCPQSMDLWLA----LARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHhCCchH--HHHHHHH----hccChHHHHHHHHHHHH-hccchHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444568888888877543 5554443 45666679999888776 34345666655 455567899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 260 AMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN----RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 260 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
..++. ++.+...|.+....--.+|. .+....++.+-+ ..|+..+...|..=...|-..|..--+..+....+..
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn-~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGN-VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 99875 56788889888877778887 888888887654 4689999999999999999999999999999999888
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044251 336 GIPS--NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKS 413 (686)
Q Consensus 336 g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 413 (686)
|+.- -..+|+.-...|.+.+.++-|..+|...++.-. -+...|......--..|..+....+|+++...-. -....
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~l 586 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEIL 586 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhH
Confidence 7653 346889999999999999999999999888633 3667788777777788999999999999987622 23445
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044251 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR 493 (686)
Q Consensus 414 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 493 (686)
+......+-..|+. ..|..++...-+..+. +...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-.
T Consensus 587 wlM~ake~w~agdv-~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDV-PAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHH
Confidence 55555566667777 6799999999888655 778899999999999999999999999887 5678888877777778
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
..++.++|.+++++.++.- +.-...|..+...+-..++++.|...|..-.+. ++-.+-.|-.|...--+.|.+-.|..
T Consensus 663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 8899999999999998764 666788999999999999999999999876544 24456778888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----------Hhhhhhcchhh
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL----------DVKVATKNRRD 643 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l----------~a~~~~~~~~~ 643 (686)
+|++..-++ +-|...|...|..=.+.|+.+.|..+..++++.- ..+...|..-+.+. +|......
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkce~--- 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--- 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhccC---
Confidence 999998764 3378899999999999999999999999988752 22334444444333 11111111
Q ss_pred hHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcc
Q 044251 644 KSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
...++-.+ +++.-...+.++|++-|.++.+..||+-|
T Consensus 816 dphVllai-a~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 816 DPHVLLAI-AKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred CchhHHHH-HHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 11111112 12222344667888888899888887755
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-13 Score=127.87 Aligned_cols=431 Identities=13% Similarity=0.064 Sum_probs=296.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVS---PRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
+...+.+.+.+..|+++|+.++.+.|.... ....+.+...+.+.|+++.|+..|+...+.. |+..+--.|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhhe
Confidence 345566777899999999999999776532 2344455556889999999999999876532 77766666777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH-----HHHHHcCC-CHHHHHHHHHHHHHCCCCCCHH-
Q 044251 247 WCGRYDDAWKAYEAMEANNVR------------PDHVTCSIMI-----TAMRKNGR-SAKEAWEFFEKMNRKGVKLSQE- 307 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~ll-----~~~~~~g~-~~~~a~~~~~~m~~~~~~~~~~- 307 (686)
..|+-++..+.|.+|...-.. |+....+..| .-+-+..+ ..+.++-.-.+++.--+.|+-.
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 889999999999999864222 3333333222 22222221 0122222222222211222211
Q ss_pred ------------HH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 044251 308 ------------VV--------GALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK--SNQLEEAEGLFQ 365 (686)
Q Consensus 308 ------------~~--------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~ 365 (686)
.+ ..-...+.+.|+++.|.+++.-+.+..-+.-...-+.|-..+.- -.++..|.++-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 01 11224577899999999999988877444333334444433333 346777877776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC
Q 044251 366 EMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP 445 (686)
Q Consensus 366 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~ 445 (686)
..+... .-+......-.+.....|++++|.+.|++.+...-.-....|+.-+. +-..|++ ++|++.|-++...- ..
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~l-deald~f~klh~il-~n 556 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNL-DEALDCFLKLHAIL-LN 556 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCH-HHHHHHHHHHHHHH-Hh
Confidence 665432 11333333344455568999999999999986533223333443332 3344566 88999998875432 22
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+..+...+...|-...+...|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.-.+. ++.+..+...|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 6777778889999999999999999888765 6778899999999999999999999988776543 4778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG-RGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 604 (686)
.|....-+++|+.+|++..- +.|+..-|..|+..|. +.|++.+|.++++...++ ++-|...+.-|++.|...|- .
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~ 710 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-K 710 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-h
Confidence 99999999999999998653 5899999999987765 689999999999999874 56688888888888877774 3
Q ss_pred HHHHHHHH
Q 044251 605 RAFFYHKQ 612 (686)
Q Consensus 605 ~A~~~~~~ 612 (686)
++.++-++
T Consensus 711 d~key~~k 718 (840)
T KOG2003|consen 711 DAKEYADK 718 (840)
T ss_pred hHHHHHHH
Confidence 34444333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-12 Score=120.79 Aligned_cols=310 Identities=15% Similarity=0.110 Sum_probs=223.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCCCChHHH
Q 044251 354 SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA---KSYTCLISAYGRPRKMSDM 430 (686)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~~ 430 (686)
.++.++|.++|-+|.+.... +..+--+|.+.|.+.|..+.|+++.+.+.+..-.+.. ...-.|..-|... ++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a-Gl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA-GLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh-hhhhH
Confidence 56778888888888775322 3345556788888888888888888887764222211 1222334445666 44588
Q ss_pred HHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 431 AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI----ETYTALLDAFRRSGDTGMMMKIWK 506 (686)
Q Consensus 431 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~ 506 (686)
|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|+-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88888888764322 3456777888999999999999999988886554432 567788888888899999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+..+.+ +..+.+--.+.+.+...|++..|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+. .++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 999876 45555666778888899999999999999988765555778899999999999999999999999875 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhh----hhcchhhhHHHHHHHH--hcccchhh
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKV----ATKNRRDKSAILGIIN--SKMGMVKA 660 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~----~~~~~~~~~~~~~~~~--~~~~~~~~ 660 (686)
...-..+...-....-.+.|..++.+-++. .|+...+..+++.--+.. ...+......+++... +.++.|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 444555555445555567777777666654 499998888888753322 2333344444544432 34588999
Q ss_pred cccchhHHHHH
Q 044251 661 KKKGKKDEFWK 671 (686)
Q Consensus 661 ~~~~a~~~f~~ 671 (686)
||..+..+||.
T Consensus 360 CGF~a~~l~W~ 370 (389)
T COG2956 360 CGFTAHTLYWH 370 (389)
T ss_pred cCCcceeeeee
Confidence 99999999985
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-11 Score=115.06 Aligned_cols=364 Identities=12% Similarity=0.075 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HH-HHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS-QE-VVG 310 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~-~~-~~~ 310 (686)
.|...+-.....+.+.|....|.+.|......- +-.-.+|.-|...+. . .+.+ ..... +...+ .. .=-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~-~e~~----~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D-IEIL----SILVV-GLPSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h-HHHH----HHHHh-cCcccchHHHHH
Confidence 455555556666667777777777777766531 222233333332221 1 2111 11111 11111 11 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK--PTSATFNILMDAYSR 388 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~ 388 (686)
.+..++-...+.+++.+-.......|.+.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-+-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 233455555566777777777777777666655555556666677777777777777765311 145566655544222
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHH
Q 044251 389 RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
... +.++.+-.-.--+--+.|...+.+-|+-.+.. ++|...|++..+.++. ....|+.+.+-|....+...|++
T Consensus 312 ~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eH-EKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEH-EKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhH-HHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 111 11111111000011233444444444444333 6677777777666544 45667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.|+..++- .+-|-..|..+.++|.-.+...-|+-.|++..... +.|..+|.+|.++|.+.+++++|++.|.+....|
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 77776663 23355667777777777777777777777776655 5566777777777777777777777777766665
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----LNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
..+...|..|...|-+.++.++|...+++.++ .|..-+ ..+..-|..-+.+.+++++|..+......
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 33556667777777777777777766665543 222222 12222244455666777777666655543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-11 Score=126.50 Aligned_cols=327 Identities=10% Similarity=0.074 Sum_probs=205.0
Q ss_pred HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH
Q 044251 209 VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK 288 (686)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 288 (686)
.+...|++++|.+++.++....+ .+...|..|...|-+.|+.++++..+-..-..+ +-|...|..+.....+.|. +.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~-i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN-IN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc-HH
Confidence 34455999999999999887443 788999999999999999999988766554432 4567889999888889998 99
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHH
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNT----LINAYCKSNQLEEAEGLF 364 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~ 364 (686)
.|.-.|.++++..+ ++...+---+..|-+.|+...|..-|.++.....+.|..-... .++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999864 3566666677889999999999999999998854334333333 455667778889999998
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---------------------------HH
Q 044251 365 QEMKTK-GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSY---------------------------TC 416 (686)
Q Consensus 365 ~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---------------------------~~ 416 (686)
+..... +-..+...+++++..+.+...++.+......+......+|..-+ ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887763 22335567888999999999999999888887763333333222 11
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcC--CCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044251 417 LISAYGRPRKMSDMAADAFLRMKRVG--IKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRR 494 (686)
Q Consensus 417 ll~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 494 (686)
.+. +.+.... +....+........ +.-+...|.-+..+|.+.|.+.+|+.+|..+......-+...|..+..+|..
T Consensus 384 ~ic-L~~L~~~-e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 384 MIC-LVHLKER-ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hhh-hhccccc-chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 111 1111000 11111122222222 2223344444555555555555555555555443333334445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 495 SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 495 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
.|.++.|.+.|+.++... +.+..+--.|...+.+.|+.++|.+.+..
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 555555555555554443 33333444444444455555555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-09 Score=107.76 Aligned_cols=453 Identities=9% Similarity=0.003 Sum_probs=322.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
+....+...+..=..++++..|..+|++++..+.... ..|..-+.+=.+...+..|+.++++.... .|.--..|-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i--tLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI--TLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHH
Confidence 3444555555566677888999999999998764433 67777777888899999999999987763 33445667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
+-+=-..|+...|.++|+.-.+- .|+..+|++.|.--.+... .+.|..+|++.+- +.|+..+|.-..+.-.+.|.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyke-ieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKE-IERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhH-HHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 77777789999999999998876 8999999999998888877 8999999999886 45899999999999999999
Q ss_pred HHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 044251 322 KNEALIIQMEMEKK-GI-PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 322 ~~~A~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
+..|..+|....+. |- ..+...+.+....-.++..++.|.-+|+-.++.=.+-. ...|......--+-|+.......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999988765 11 11233455555555567788999999988877522211 33455555444455655443332
Q ss_pred --------HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-hhhHhhhH--------HHHHhcC
Q 044251 399 --------LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT-SHSYTALI--------HAYSVGG 461 (686)
Q Consensus 399 --------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li--------~~~~~~g 461 (686)
|+.+...+ .-|-.++--.+......|+. +...++|++....-+... -..|..-| -.-....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~-~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDK-DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCH-HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22233322 23556666666666666665 788999998876432211 11122111 1123467
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 462 WHEKAYAAFENMLREEIKPSIETYTALLDAF----RRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
+.+.+.++|+..++. ++-...||.-+--.| .+..++..|.+++...+ |.-|-..++-..|..-.+.+++|.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 888999999999884 555556665554444 46678999999998886 55778888999999989999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 538 DVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.++++.+..+ +-|..+|......-...|+.+.|..+|.-++.... ......|-+.|.-=...|.++.|..+++++++.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999999887 44888898888888889999999999998886321 112345556666557789999999999999876
Q ss_pred CCCCCHHHHHHHHH
Q 044251 617 GQVPDVKSYEKLRS 630 (686)
Q Consensus 617 g~~p~~~~~~~l~~ 630 (686)
. +...++-....
T Consensus 537 t--~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 T--QHVKVWISFAK 548 (677)
T ss_pred c--ccchHHHhHHH
Confidence 4 44445544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-10 Score=112.47 Aligned_cols=379 Identities=12% Similarity=0.067 Sum_probs=263.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH-HH
Q 044251 199 SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP-DHVTCS-IM 276 (686)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~-~l 276 (686)
++..+-..+.++.+.|....|+..|..... .. +..|.+.+....-..+.+.+.. +... .+. +..... .+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~---P~~W~AWleL~~lit~~e~~~~----l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RY---PWFWSAWLELSELITDIEILSI----LVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cC---CcchHHHHHHHHhhchHHHHHH----HHhc-CcccchHHHHHHH
Confidence 445556667778888999999999988765 22 3345444444333333333322 2221 122 222222 23
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHc
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGI--PSNAIVYNTLINAYCKS 354 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~ 354 (686)
..++..... .+++++-.+.....|.+.+...-+....+.....+++.|..+|+++.+..+ -.|..+|..++..--.+
T Consensus 234 ~~a~~el~q-~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQ-HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 345555554 788888888999999887777777777788889999999999999998832 12667787776443222
Q ss_pred CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHH
Q 044251 355 NQLEE-AEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAAD 433 (686)
Q Consensus 355 g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~ 433 (686)
..+.- |..+++ -... -..|..++.+-|+-.++.++|..+|++.++.+.. ....++.+-.-|....+. ..|.+
T Consensus 313 skLs~LA~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt-~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT-HAAIE 385 (559)
T ss_pred HHHHHHHHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc-HHHHH
Confidence 22111 122211 1123 3347778889999999999999999999886422 345666666778777666 78999
Q ss_pred HHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 434 AFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
.|+...+..+. |-..|-.|.++|.-.+.+.-|+-.|++.... .+-|...|.+|.++|.+.++.++|++.|...+..+
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999998765 8899999999999999999999999999885 34477999999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHH---HHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGK----IGLQPTLMTY---NMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
..+...+..|.+.|-+.++..+|...|.+.++ .|.. +..|. --|..-+.+.+++++|..+...... |
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~---- 536 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G---- 536 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C----
Confidence 55778999999999999999999999988654 2322 22222 2244445566666666655444332 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.-..++|..++++..+.
T Consensus 537 -------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 -------------ETECEEAKALLREIRKI 553 (559)
T ss_pred -------------CchHHHHHHHHHHHHHh
Confidence 23346667777666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-11 Score=127.22 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=183.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
..|+ ++.|.+.+.+..+.. |+ ...+.....+....|+.+.|.+.+....+....+...........+...|+++.|
T Consensus 96 ~~g~-~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGD-YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCC-HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4565 888888887776653 33 3334445667777788888888888877653332333444457777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT-CLISAYGRPRKMSDMAADAFLRMK 439 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~~A~~~~~~~~ 439 (686)
...++.+.+..+. +...+..+..++...|+++.|.+++..+.+.+.. +...+. ....++
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------ 232 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------ 232 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------------------
Confidence 8888888877543 5566777888888888888888888888776533 222221 111111
Q ss_pred HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 044251 440 RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE---IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT 516 (686)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 516 (686)
..+...+..+++.+.+..+.... .+.+...+..+...+...|+.+.|.+++++.++......
T Consensus 233 ---------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 233 ---------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ---------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00011111122222333333221 112555666666666666666666666666665542221
Q ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 517 RVTF-NILLDGFAKQGQYLEARDVVSEFGKIGLQPTL--MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593 (686)
Q Consensus 517 ~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 593 (686)
...+ ..........++.+.+.+.++...+.. +-|+ ....++.+.|.+.|++++|.+.|+........||...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1111 111111223466777888888877654 3355 67778999999999999999999954443457888888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 044251 594 IYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 594 i~~~~~~g~~~~A~~~~~~m~~ 615 (686)
...+.+.|+.++|.++|++.+.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-11 Score=127.72 Aligned_cols=295 Identities=16% Similarity=0.101 Sum_probs=208.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHV-TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
....|+++.|.+.+....+. .|+.. .+-....+....|+ .+.|.+++.++.+....+...........+...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~-~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGD-EARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 35689999999999988776 45543 34444566677787 9999999999987643333345555688899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD-AYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~m 402 (686)
.|...++.+.+.. |-+..++..+...+.+.|++++|.+++..+.+.+.. +...+..+-. ++ . ..+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~-------~~l~~~ 239 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--I-------GLLDEA 239 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--H-------HHHHHH
Confidence 9999999999986 447788999999999999999999999999998654 3333321111 11 0 001110
Q ss_pred HHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC---CCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 403 QDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI---KPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
.. +...+.+..+....+ +.+...+..++..+...|+.++|..++++..+..
T Consensus 240 ~~------------------------~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-- 293 (409)
T TIGR00540 240 MA------------------------DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-- 293 (409)
T ss_pred HH------------------------hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence 00 011112222222211 1267778888888999999999999999988853
Q ss_pred CCHHH-HHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044251 480 PSIET-YTALLDAF--RRSGDTGMMMKIWKLMMSEKVEGTR--VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMT 554 (686)
Q Consensus 480 p~~~~-~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 554 (686)
|+... ...++..+ ...++.+.+.+.++...+.. +.+. ....++...|.+.|++++|.+.|+........|+...
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 33321 00122222 33477788888888887664 5556 7778899999999999999999996444445788888
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+..+...+.+.|+.++|.+++++...
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-10 Score=113.21 Aligned_cols=423 Identities=12% Similarity=0.038 Sum_probs=264.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
...+.+.++|.|++|+++|.|++...|.. +..|.....+|...|+++++.+--.+..+..+ .-+.++.--..++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e--piFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE--PIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCC--chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhh
Confidence 44667788999999999999999997764 47889999999999999999888877776432 4466777778888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG--VKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
|++++|+.=..-..-.+.-.|..+--.+=+.+-+.++ ..+.+.+. +.+ +-|+.....+....+...-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~--~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~----- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM--KKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK----- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH--HHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc-----
Confidence 9999886533332211112222222222222222221 22222222 122 34454444444443322100
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHhcCCHH
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTK---GLKPT---------SATFNILMDAYSRRMQPE 393 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~~~~~ 393 (686)
..+...+.+.|...-..+=..+.. ...+..|.+.+.+-... ....+ ..+.......+.-.|+.-
T Consensus 267 ---~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 267 ---PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred ---ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 000000111111111111111111 11334444433322110 01111 122222223334567888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 394 IVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
.+..-|+..++....++. .|--+..+|....+. ++....|......++. +..+|..-...+.-.+++++|..=|++.
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~-~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQS-EKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhcc-HHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888876544333 255555567766554 7788999998888765 7778888888888889999999999999
Q ss_pred HHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---
Q 044251 474 LREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--- 549 (686)
Q Consensus 474 ~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--- 549 (686)
+.. .| +...|--+.-+.-+.+.++.++..|++.++. +|..+.+|+.....+...++++.|.+.|+..+.+...
T Consensus 421 i~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 421 ISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 874 34 3355555555556888999999999999865 4778889999999999999999999999998765422
Q ss_pred --CCHHH--HHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 550 --PTLMT--YNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 550 --p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.++.. --.++..- -.+++..|+++++++.+. .| ....|..|...-.+.|+.++|+++|++....
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12222 22222222 238899999999999864 45 3567888998899999999999999987643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-14 Score=140.19 Aligned_cols=262 Identities=15% Similarity=0.113 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 044251 346 TLINAYCKSNQLEEAEGLFQEMKTKG-LKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
.+...+.+.|++++|+++++...... ..-+...|..+...+...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775543332 1223344455555666677777777777777655432 44445555555 344
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 425 RKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE-IKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
++. ++|..++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 91 ~~~-~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDP-EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccc-cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444 66777766654432 355666777788888899999998888876542 34567778888888889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
++++.++.. |.+..+.+.++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|+.+|++.....
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 999998876 5577888888888888999998888888877654 4566778889999999999999999999988742
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
+.|+.+...+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33788888999999999999999998887754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-11 Score=123.70 Aligned_cols=292 Identities=12% Similarity=0.045 Sum_probs=173.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 283 NGRSAKEAWEFFEKMNRKGVKLSQEV-VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAE 361 (686)
Q Consensus 283 ~g~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 361 (686)
.|+ ++.|.+.+....+.. .++.. |........+.|+++.|.+.+.++.+................+...|+++.|.
T Consensus 97 eGd-~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGD-YQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCC-HHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 355 777776666554432 12222 33334444677777777777777766422211122223355666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q 044251 362 GLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV 441 (686)
Q Consensus 362 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~ 441 (686)
..++.+.+.... +...+..+..+|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 777777766533 4556666777777777777777777777665433211 111000
Q ss_pred CCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 044251 442 GIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521 (686)
Q Consensus 442 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 521 (686)
..+|..++.......+.+....+++.+-+. .+.+......+...+...|+.+.|.+++++..+. +++....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 001111122222222334444444444322 3446666677777777777777777777777663 3343221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVR 601 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 601 (686)
++.+....++.+++.+.++...+.. +-|+..+..+...|.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcC
Confidence 2333344577788888887777654 34667777788888888888888888888875 3678777777888888888
Q ss_pred CHHHHHHHHHHHHH
Q 044251 602 DFKRAFFYHKQMVK 615 (686)
Q Consensus 602 ~~~~A~~~~~~m~~ 615 (686)
+.++|.+++++.+.
T Consensus 376 ~~~~A~~~~~~~l~ 389 (398)
T PRK10747 376 KPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888877654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-10 Score=120.17 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=188.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIM-ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
.|++++|.+.+....+. .++...+..+ ..+....|+ ++.|.+++.++.+................+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~-~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGD-EARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 69999999888876654 2233333333 333366777 9999999999987543222223234467889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHc
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILM-DAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
..++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..+ ......+- .++. .++.....
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~---------~l~~~~~~- 241 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWI---------GLMDQAMA- 241 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH---------HHHHHHHH-
Confidence 9999999886 4478889999999999999999999999999876542 22222111 1110 00111100
Q ss_pred CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 406 GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETY 485 (686)
Q Consensus 406 ~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 485 (686)
..+. +....+++.+...- +.+......+...+...|+.++|..++++..+. .++....
T Consensus 242 ------------------~~~~-~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 242 ------------------DQGS-EGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ------------------hcCH-HHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 0011 22233333322211 225556666777777777777777777777763 3444222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
++.+....++.+.+.+..+...+.. +.|...+..+...|.+.+++++|.+.|+.+.+. .|+...|..|..++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc
Confidence 1222234477777777777777655 566677777777778888888888888877664 56777777777888888
Q ss_pred CCccHHHHHHHHHHH
Q 044251 566 GQTSKLPQLLKEMAT 580 (686)
Q Consensus 566 g~~~~A~~l~~~m~~ 580 (686)
|+.++|.+++++...
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888887777653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-12 Score=127.60 Aligned_cols=282 Identities=14% Similarity=0.119 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGL--KPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..+|..+|..+... ...+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+.-+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 34556666664433 232445555666666677777777777766665421 1144556655554322 1122222
Q ss_pred HH-HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 400 LE-LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 400 ~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
.+ +.+. -+-.+.+|.++-.+|.-.++. +.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh-~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDH-DTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHH-HHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 21 2221 133566777777777766554 6777777777765432 567777777777777788888888887765 3
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044251 479 KPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNM 557 (686)
Q Consensus 479 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 557 (686)
.|.. ..|..+...|.+.++++.|+-.|+++++.+ +.+.+....+...+.+.|+.++|+.+++++..... .|+..--.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHH
Confidence 3332 566677778888888888888888888776 56777777778888888888888888888887763 36666556
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.+..+...++.++|+..|+++++ +.|+ ..+|..++..|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 67777888888899998888886 3554 6677888888888898888888888777644
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-08 Score=98.49 Aligned_cols=437 Identities=9% Similarity=0.002 Sum_probs=321.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+...+..=.+...+..|.-+++++...-|-.. ..|..-+.+=-..|++..|+++|++-.. ..|+..+|++.|
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd--qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI 181 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD--QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFI 181 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 556677778888888899999999999988755332 5565556666678999999999998765 459999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK-G-VKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~g 320 (686)
+.=.+-+.++.|..+|+...-. .|++.+|.....---+.|. ...+..+|+.+.+. | -..+...+.+....-.++.
T Consensus 182 ~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~-~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN-VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865 7999999988888888887 99999999988764 2 1112345566666666788
Q ss_pred CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 321 LKNEALIIQMEMEKKGIPSN--AIVYNTLINAYCKSNQLEEAEGL--------FQEMKTKGLKPTSATFNILMDAYSRRM 390 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (686)
.++.|.-+|.-.+.. ++.+ ...|..+...--+-|+.....+. |+.++..+. .|-.+|-..+..-...|
T Consensus 259 E~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 259 EYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcC
Confidence 899999999988887 4434 45666666665666775554443 345555433 37778888888888899
Q ss_pred CHHHHHHHHHHHHHcCCCC-CH-HHHHHHHH-----Hh---cCCCChHHHHHHHHHHHHHcCCCCChhhHhh----hHHH
Q 044251 391 QPEIVEKLLLELQDMGLEP-NA-KSYTCLIS-----AY---GRPRKMSDMAADAFLRMKRVGIKPTSHSYTA----LIHA 456 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~~~~p-~~-~~~~~ll~-----~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~ 456 (686)
+.+...++|+.....- .| .. ..+.-.|. ++ ....+. +.+.++|+...+.- .....|+.- ....
T Consensus 337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~-ertr~vyq~~l~lI-PHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV-ERTRQVYQACLDLI-PHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhc-CcccchHHHHHHHHHHH
Confidence 9999999999998652 33 11 11111111 11 112233 77889998888742 223344433 3344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 536 (686)
..+..++..|..++...+. .-|-..+|...|..=.+.++++.+..+|++.++-+ |-+..+|......-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 4567888999999987764 67888999999999999999999999999999988 67888999988888899999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HcC---------
Q 044251 537 RDVVSEFGKIG-LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV-----RVR--------- 601 (686)
Q Consensus 537 ~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~-----~~g--------- 601 (686)
..+|.-+++.. +..-...|...|.--...|.++.|..+++++++. .+-..+|.++..--. +.|
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~ 568 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEIT 568 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcc
Confidence 99999987632 1122445666666667899999999999999975 334445655543222 233
Q ss_pred --CHHHHHHHHHHHHHC
Q 044251 602 --DFKRAFFYHKQMVKS 616 (686)
Q Consensus 602 --~~~~A~~~~~~m~~~ 616 (686)
....|..+|+++...
T Consensus 569 ~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 569 DENIKRARKIFERANTY 585 (677)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 566788888877644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=137.99 Aligned_cols=261 Identities=15% Similarity=0.188 Sum_probs=98.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKG-IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRR 389 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 389 (686)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775544433 2335555555666666677777777777777765433 44455556555 577
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCChhhHhhhHHHHHhcCCHHHHHH
Q 044251 390 MQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG-IKPTSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 390 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
+++++|.+++....+. .++...+...+..+...++. +.+..+++.+.... ...+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777665443 24455556666666666555 66777777765432 23466677778888888888888888
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 469 AFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 469 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
++++.++. .| |......++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|...+++..+..
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 88888874 34 46677778888888888888888877777654 5555677788888888888888888888887765
Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 548 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+.|+.....+..++...|+.++|.++.+++..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -TT-HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 44788888888888888888888888777653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-11 Score=125.42 Aligned_cols=283 Identities=13% Similarity=0.113 Sum_probs=157.7
Q ss_pred hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCCHHHHH
Q 044251 216 GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP----DHVTCSIMITAMRKNGRSAKEAW 291 (686)
Q Consensus 216 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~~a~ 291 (686)
..+|+.+|.+++. .+..+..+...+..+|...+++++|.++|+.++.. .| +...|.+.+.-+.+ +-++
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~-----~v~L 406 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQD-----EVAL 406 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHh-----hHHH
Confidence 3477777877555 34355567777778888888888888888887665 23 44566666654432 2233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 292 EFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
..+.+-+-.--+-.+.+|.++...|.-+++.+.|++.|+..++.... ...+|+.+.+-+.....+|.|...|+..+...
T Consensus 407 s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 407 SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33322221112334566666666666666666666666666655221 45666666666666666666666666555431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHh
Q 044251 372 LKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYT 451 (686)
Q Consensus 372 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 451 (686)
.+ +-..|.-++.+|.+.++++.|+-.|+...+.+.. +.+....+...+-+.|.. ++|+++|++.....++ |...--
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~-d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRK-DKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhh-hHHHHHHHHHHhcCCC-CchhHH
Confidence 11 2224444555666666666666666666554321 333344444444444343 5566666666555444 444434
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
..+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4445555566666666666666553 22233455555566666666666665555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-10 Score=105.74 Aligned_cols=233 Identities=16% Similarity=0.175 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHH
Q 044251 273 CSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG-IPS--NAIVYNTLIN 349 (686)
Q Consensus 273 ~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~--~~~~~~~li~ 349 (686)
|..=++.+..+. .++|.++|-+|.+.+.. +..+..+|.+.|.+.|..|.|+++++.+.+.- ... -....-.|..
T Consensus 39 Yv~GlNfLLs~Q--~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQ--PDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcC--cchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 433344333332 67888888888875432 55667788888888999999999988887761 110 1223455667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCCC
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA----KSYTCLISAYGRPR 425 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~ 425 (686)
-|...|-+|.|+++|..+.+.+.. -......|+..|-...+|++|+.+-+++.+.+-.+.. ..|+-+...+.-..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 788889999999999988876432 3456777888888889999999888888776544321 12222332222222
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 426 KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIW 505 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 505 (686)
+. +.|..++.+..+.+.+ .+..--.+...+...|++++|.+.++...+.+..--..+...|..+|...|+.++....+
T Consensus 195 ~~-d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DV-DRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hH-HHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22 4455555555444322 233333344445555555555555555554332222234444445555555555555555
Q ss_pred HHHHhc
Q 044251 506 KLMMSE 511 (686)
Q Consensus 506 ~~~~~~ 511 (686)
..+.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 544443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-09 Score=109.42 Aligned_cols=456 Identities=15% Similarity=0.068 Sum_probs=308.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHH
Q 044251 161 RVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNA 240 (686)
Q Consensus 161 ~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 240 (686)
.++.+....+.+....+.+|..|+-+-+++.... .+|....-++.++.-.|++++|..++..-.- ...+..+..-
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL 87 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYL 87 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHH
Confidence 3456666677777788888888888888877654 3446666778888888888888777765422 1267778888
Q ss_pred HHHHHHHcCCHHHHHHHHH----HHHhC---------CCCCCHHH----HHHHHHHHHHc------CCCHHHHHHHHHHH
Q 044251 241 AISGLFWCGRYDDAWKAYE----AMEAN---------NVRPDHVT----CSIMITAMRKN------GRSAKEAWEFFEKM 297 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~----~m~~~---------g~~p~~~~----~~~ll~~~~~~------g~~~~~a~~~~~~m 297 (686)
....+.+..++++|..++. .+... -+.+|... -+.....|.-. ++..++|...|.+.
T Consensus 88 ~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~A 167 (611)
T KOG1173|consen 88 AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEA 167 (611)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence 8888888899999988887 22110 01111111 11111112111 12266777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHh-----------------cCCHHHHH-HHHHHHH----------------HCCCCCCHHH
Q 044251 298 NRKGVKLSQEVVGALMKSFCD-----------------EGLKNEAL-IIQMEME----------------KKGIPSNAIV 343 (686)
Q Consensus 298 ~~~~~~~~~~~~~~li~~~~~-----------------~g~~~~A~-~~~~~~~----------------~~g~~~~~~~ 343 (686)
+..++. ....+..++....- .+.-.+-+ .+|+... -.|..-+...
T Consensus 168 l~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 168 LLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred Hhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 654322 11222222111100 01111111 1121110 0122335555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 344 YNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
......-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.+|.+.- +-.+.+|-++.--|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 6666677778899999999999988863 2244445555667888888777776666776652 2356677776666666
Q ss_pred CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
.++. .+|++.|.+....+.. =...|-.....|.-.|..++|+..|...-+. ++-...-+--+..-|.+.++++.|.+
T Consensus 325 i~k~-seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 325 IGKY-SEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred hcCc-HHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 6666 7799999998766433 2467888899999999999999999888764 22222233445556889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK----IGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
.|.+..... |.|+.+++-+.-.....+.+.+|..+|+..+. .+.+ --..+++.|+.+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 999998775 77888888888777788999999999998661 1111 1355789999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 578 MATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 578 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+... +-|..++.+++-.|...|+++.|+..|.+.+. +.||..+...++..
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99752 44899999999999999999999999999885 67998777666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-08 Score=96.61 Aligned_cols=445 Identities=13% Similarity=0.071 Sum_probs=280.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC------------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQE------------------PSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK 230 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (686)
.++....+...+..|++.|..+.++. +...+.......+..|...++-+.|+..+..++...
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 44555556667778888888877652 222344556667778888888888888888776532
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 231 EFRDAHVYNAAISGLFWC-GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVV 309 (686)
Q Consensus 231 ~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ 309 (686)
...--|.++..+.+. ++..++.--+.+.... .| .--..|.++.+.+ +..+..-=..|....+.+...+.
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvre--cp---~aL~~i~~ll~l~--v~g~e~~S~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRE--CP---MALQVIEALLELG--VNGNEINSLVMHAATVPDHFDWL 197 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHh--cc---hHHHHHHHHHHHh--hcchhhhhhhhhheecCCCccHH
Confidence 222233333333333 3332333333333221 11 1111222222222 11222222233333344444444
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 044251 310 GALMKSFCD--EGLKNEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDA 385 (686)
Q Consensus 310 ~~li~~~~~--~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 385 (686)
..-+.+++. .++-..|...+-.+... -++.|+.....+..++...|+.++|+..|++..-.+ |+.. ........
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHH
Confidence 444444433 33434444433333222 367789999999999999999999999999987653 2222 23333344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (686)
+.+.|+.+....+...+....-..-...|..+-..|. ..+. +.|+.+-++..+.... +...|-.-...+...|++++
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~-~K~~-~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD-EKKF-ERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh-hhhH-HHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHH
Confidence 5678999998888888765321111122222222222 2244 6677777777665433 45566666778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHH
Q 044251 466 AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL-DGFAK-QGQYLEARDVVSEF 543 (686)
Q Consensus 466 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~ 543 (686)
|.-.|+..... -+-+..+|..|+..|...|.+.+|...-+...+.- +.+..++..+. ..|.- -.--++|.+++++.
T Consensus 353 A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999998874 23466999999999999999999998887776542 55666666653 33332 23347899999987
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 544 GKIGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 544 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 622 (686)
++. .|+ ....+.+...|...|+.++++.++++.+. ..||....+.|...+...+.+++|+..|..+++.+ |..
T Consensus 431 L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~~ 504 (564)
T KOG1174|consen 431 LKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PKS 504 (564)
T ss_pred hcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--ccc
Confidence 765 444 55677888899999999999999999986 48999999999999999999999999999998754 666
Q ss_pred HHHHHHHHHHHhhh
Q 044251 623 KSYEKLRSILDVKV 636 (686)
Q Consensus 623 ~~~~~l~~~l~a~~ 636 (686)
.---.=++.++...
T Consensus 505 ~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 505 KRTLRGLRLLEKSD 518 (564)
T ss_pred hHHHHHHHHHHhcc
Confidence 54433444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-08 Score=98.91 Aligned_cols=435 Identities=11% Similarity=0.093 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
-.+...+..+..+|++-.-...|..++..-|.....+.|...+......|-++-++.+|++..+ .++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 4566778888999999999999999999877777778999999999999999999999999887 566668888999
Q ss_pred HHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCCC--HHHHHHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANN------VRPDHVTCSIMITAMRKNGRSAK---EAWEFFEKMNRKGVKLS--QEVVGALM 313 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~---~a~~~~~~m~~~~~~~~--~~~~~~li 313 (686)
+++.+++++|.+.+....... .+.+...|+-+-....++.+ .- ....+++.++.+ -+| ...|++|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~-~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD-KVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc-hhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 999999999999998886431 13455567777666666543 11 133444444433 223 35789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHCC
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN----------------------QLEEAEGLFQEMKTKG 371 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~g 371 (686)
+.|.+.|.++.|..+|++....- .++.-|..+.++|++-. +++-.+..|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999987762 23444444444444311 2333444455544432
Q ss_pred C----------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHhcCCCChHHHHHHH
Q 044251 372 L----------K-PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP------NAKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 372 ~----------~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
. . -++..|..-+. ...|+..+....|.+.... +.| -...+..+...|-..|++ +.|..+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l-~~aRvi 409 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL-DDARVI 409 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH-HHHHHH
Confidence 1 1 12333433333 2356677777788777653 222 234567777888888777 889999
Q ss_pred HHHHHHcCCCCC---hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC-----------CCC------CHHHHHHHHHHHHH
Q 044251 435 FLRMKRVGIKPT---SHSYTALIHAYSVGGWHEKAYAAFENMLREE-----------IKP------SIETYTALLDAFRR 494 (686)
Q Consensus 435 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p------~~~~~~~ll~~~~~ 494 (686)
|++..+...+.- ..+|.....+-.+..+++.|+.+++...... .++ +...|...++.-..
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999887654322 4567777777778889999999988775421 111 23446666676777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCccH
Q 044251 495 SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL-MTYNMLMNAYGR---GGQTSK 570 (686)
Q Consensus 495 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~ 570 (686)
.|-++....+|+.+++..+.....+.| ....+....-++++++++++-+.+-..|++ ..|+..+.-+.+ .-.++.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 889999999999999887544333333 333445666788999999886655445554 467776665543 236789
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHH
Q 044251 571 LPQLLKEMATLNIKPDSVTYSTMI--YAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 571 A~~l~~~m~~~g~~pd~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 614 (686)
|..+|+++++ |++|...-+--|+ ..=-+.|-...|+.+++++-
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999998 7777532222222 12234577777777777643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-08 Score=101.69 Aligned_cols=431 Identities=12% Similarity=0.056 Sum_probs=289.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+--+...++|...+++.+.++...|... ++....+..+...|+.++|........... ..+.++|..+.-.+....+
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHg--eslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHG--ESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccc--hhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhh
Confidence 3344567899999999999999766554 777777888889999999999988877643 3788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQM 330 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (686)
+++|++.|......+ +.|...|.-+.-.-++.++ ++.....-.+.++.. +.....|..++.++.-.|+...|..+++
T Consensus 91 Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd-~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD-YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998874 4455666655544555555 666666666676653 2256778888888999999999999999
Q ss_pred HHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 331 EMEKKG-IPSNAIVYNTLI------NAYCKSNQLEEAEGLFQEMKTKGLKPTSAT-FNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 331 ~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
...+.. -.|+...+.... ....+.|.+++|++.+..-... + .|... -..-...+.+.+++++|..++..+
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 998774 245665554433 3345678888888877665443 1 13332 345566788899999999999999
Q ss_pred HHcCCCCCHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 403 QDMGLEPNAKSYTCLIS-AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
+.. .||...|...+. ++.+..+..+....+|....+.-+... ..-..=+.......-.+..-.++..+.+.|+++-
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 886 566666655444 443333442333366766655422211 1111111222222223444556667777777654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC----------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMM----SEK----------VEGTRVTFN--ILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
...+.++- -.-...+-..++.-.+. ..| -+|+...|. .++..|-+.|+++.|...++...+
T Consensus 323 f~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 33333332 22111111111111111 111 145555444 567788899999999999999875
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044251 546 IGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 546 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 618 (686)
. .|+ +..|-.=.+.+...|.+++|..++++..+.+ .+|..+=..-+.-..+..+.++|.++....-+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4 444 3455555688899999999999999999765 45766666777888899999999999999887774
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-09 Score=104.46 Aligned_cols=294 Identities=13% Similarity=0.119 Sum_probs=161.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
.|+|.+|+++..+-.+.+- -....|..-..+.-..|+ .+.+-+++.++.+....++.....+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd-~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGD-EDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhccc-HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4666666666666555431 122233333344444454 55555666555554333444455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGL 407 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 407 (686)
-++.+.+.+.. +.........+|.+.|++..+..++..|.+.|.--+...-.
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--------------------------- 226 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH---------------------------
Confidence 55555555333 44555555555555555555555555555554332211100
Q ss_pred CCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044251 408 EPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTA 487 (686)
Q Consensus 408 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 487 (686)
....+|..++.-....++. +.-...++..... .+.+...-..++.-+.+.|+.++|.++.++..+++..|+...
T Consensus 227 -le~~a~~glL~q~~~~~~~-~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--- 300 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGS-EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--- 300 (400)
T ss_pred -HHHHHHHHHHHHHhccccc-hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---
Confidence 0112344444444433332 2223333333221 123455556666777778888888888877777766655221
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
.-.+.+.++...-++..++-.+.. +.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+
T Consensus 301 -~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 301 -LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred -HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 123445566666666666655443 445567777777777777777777777765543 5677777777777777777
Q ss_pred ccHHHHHHHHHHHC
Q 044251 568 TSKLPQLLKEMATL 581 (686)
Q Consensus 568 ~~~A~~l~~~m~~~ 581 (686)
..+|.+..++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-10 Score=109.09 Aligned_cols=412 Identities=13% Similarity=0.061 Sum_probs=248.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044251 203 CSVLFPVLGRARMGDDLMVLFKNLPQSKEFRD-AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAM 280 (686)
Q Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 280 (686)
+...+.-|.+.|++++|++.|+...+. .|+ +..|.....+|...|+|+++.+.-.+.++. .|+ +-.+..-..+.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344455677999999999999998773 255 888999999999999999999988888876 565 34555555666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH-CC--CCCCHHHHHHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQME--------MEK-KG--IPSNAIVYNTLIN 349 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~-~g--~~~~~~~~~~li~ 349 (686)
-..|+ +++|+.=+ |...++..+....-.-.+.+++.. -.+ .+ +-|+.....+...
T Consensus 194 E~lg~-~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 194 EQLGK-FDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred Hhhcc-HHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 66666 55554222 222233333222222222222222 112 11 1233333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc---CCCC---CHH----HHHHHH
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR-RMQPEIVEKLLLELQDM---GLEP---NAK----SYTCLI 418 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~---~~~p---~~~----~~~~ll 418 (686)
.+... +. ..+...+-+.|...-..+=..+.. ...+..+...+.+-... .... |.. .-..++
T Consensus 260 sF~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hcccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22110 00 000000000011110100000000 00112222211111000 0000 110 011111
Q ss_pred H--HhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 419 S--AYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 419 ~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
. .+.-.|+. -.|..-|+........++. .|--+..+|.+..+.++.+..|.+....+ +.+..+|.--.+.+.-.+
T Consensus 332 ~gtF~fL~g~~-~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 332 RGTFHFLKGDS-LGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhhhhcCCc-hhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 1 12334455 5588899998888665333 37778888999999999999999998853 336677888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 497 DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 497 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
+++.|..-|++.++.. +.+...|-.+.-+..+.++++++...|++..+. ++--+..|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999999876 556777777777777899999999999998764 45578899999999999999999999999
Q ss_pred HHHHCCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhhhhcchhhhHH
Q 044251 577 EMATLNIKPD---------SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK-SYEKLRSILDVKVATKNRRDKSA 646 (686)
Q Consensus 577 ~m~~~g~~pd---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l~a~~~~~~~~~~~~ 646 (686)
...+. .|+ +.+.-.++-.-++ +++..|..+++++++.. |..+ .|..|+.+.
T Consensus 487 ~ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~-------------- 547 (606)
T KOG0547|consen 487 KAIEL--EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD--PKCEQAYETLAQFE-------------- 547 (606)
T ss_pred HHHhh--ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC--chHHHHHHHHHHHH--------------
Confidence 98863 333 2223333333355 89999999999998743 5443 444444443
Q ss_pred HHHHHHhcccchhhcccchhHHHHHHHh
Q 044251 647 ILGIINSKMGMVKAKKKGKKDEFWKYKK 674 (686)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~a~~~f~~~~~ 674 (686)
+..|+.++|+++|++...
T Consensus 548 ----------lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 548 ----------LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ----------HHHhhHHHHHHHHHHHHH
Confidence 244566778888877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-09 Score=101.58 Aligned_cols=294 Identities=15% Similarity=0.103 Sum_probs=209.6
Q ss_pred HHHHHH--ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 206 LFPVLG--RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 206 l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
+..++. -.|++.+|.++..+-.+.+. .....|...+.+--+.|+.+.|-..+.+..+.--.++...+-+....+...
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 444444 36999999999998776544 455667777788889999999999999998763255667777778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCC
Q 044251 284 GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA-------IVYNTLINAYCKSNQ 356 (686)
Q Consensus 284 g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~ 356 (686)
|+ ...|..-+.++.+.+.. ++.......++|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+.
T Consensus 167 ~d-~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 167 RD-YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CC-chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88 89999999999987644 7788899999999999999999999999999875444 356667766666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
.+.-...|+..... .+-+...-..++.-+.+.|+.++|.++..+..+.+..|. ...++ .+.+.++. +.-++..+
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~-~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDP-EPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCc-hHHHHHHH
Confidence 66666666666543 333455556677777888888888888888888766655 22222 23333343 33334444
Q ss_pred HHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 437 RMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 437 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
.-.+..+. +...+.+|...|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|+...|.++.++.+..
T Consensus 319 ~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33333222 446677777777777777777777776665 4677777777777777777777777777766543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-11 Score=110.44 Aligned_cols=231 Identities=12% Similarity=-0.015 Sum_probs=182.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
-+.+.+.|.+.|.+.+|.+.|+..+.+.|.. ++|..+.++|.+..++..|+.+|....+ ..+.++.....+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~---dTfllLskvY~ridQP~~AL~~~~~gld-~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---DTFLLLSKVYQRIDQPERALLVIGEGLD-SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCch---hHHHHHHHHHHHhccHHHHHHHHhhhhh-cCCchhhhhhhhHHHHH
Confidence 3467888889999999999999988887655 7888899999999999999999988877 44467777777888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL 326 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (686)
..++.++|.++|+...+.. +.++.+...+...|.-.++ ++.|+.+|+++++.|+. ++..|+.+.-.|.-.+++|.++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~-PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNN-PEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCC-hHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999998887653 3455555555666666676 88999999999988876 7888888888888888888888
Q ss_pred HHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 327 IIQMEMEKKGIPS--NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 327 ~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.-|......--.| -..+|..|.......||+..|.+.|+-.+..+.. ....+|.|.-.-.+.|+++.|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8888776553222 3567888888888888999888888887776443 556788888888888899888888887765
Q ss_pred c
Q 044251 405 M 405 (686)
Q Consensus 405 ~ 405 (686)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 4
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-07 Score=97.46 Aligned_cols=424 Identities=13% Similarity=0.095 Sum_probs=279.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
.-.|...|+-++|....+..++.++ .+..-|++++-.+....++++|++.|......+. .|...|.-+.-.-++.|+
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRD 124 (700)
T ss_pred cchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHh
Confidence 3455667888999999999988654 3447889988888889999999999999887443 789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG-VKLSQEVVGALM------KSFCDEGLKN 323 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~ 323 (686)
++.....-..+.+.. +-....|..+..+..-.|. ...|..++++..+.. -.|+...+.... ....+.|.++
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~-y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGE-YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 999999888887762 2345678888888888888 899999999998765 245655554332 3456788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH-hcCCHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD-AYS-RRMQPEIVEKLLLE 401 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~-~~~~~~~a~~~~~~ 401 (686)
.|++.+..-... +......-..-...+.+.+++++|..++..++.. .||...|+..+. ++. -.+..+....+|..
T Consensus 203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888877665544 2212333445567788999999999999999987 456666655544 443 33344444466666
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH-------
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML------- 474 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 474 (686)
..+.-..-. ..-..=+... ....+.+..-.++..+.+.|+.+ ++..+...|-.-...+ +++++.
T Consensus 280 ls~~y~r~e-~p~Rlplsvl-~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 280 LSEKYPRHE-CPRRLPLSVL-NGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSL 350 (700)
T ss_pred HhhcCcccc-cchhccHHHh-CcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhc
Confidence 654311100 0000011111 11234455556666777776543 2333333232211111 222221
Q ss_pred -HcC----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 475 -REE----------IKPSI--ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVS 541 (686)
Q Consensus 475 -~~~----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 541 (686)
..| -+|+. .++..+++.+-+.|+++.|...++..+..- +.-...|..=.+.+...|++++|..+++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 111 14444 445567788889999999999999988653 3334456666788889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC--C----HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 044251 542 EFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP--D----SVTYSTM--IYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 542 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~~~~~l--i~~~~~~g~~~~A~~~~~~m 613 (686)
+..+.. .+|...-.--..-..++.+.++|.++.....+.|... | ..+|-.+ +.+|.+.|++-+|++-|..+
T Consensus 430 ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 430 EAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 988876 5566655566667778899999999988887766411 1 1222222 45677777777776554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-08 Score=103.34 Aligned_cols=431 Identities=13% Similarity=0.071 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+......+...|++++|+++++.....-.+. .......+..+.+.|+.++|..+|..+...++ .|..-|..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk--~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDK--LAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence 444556778889999999999998877665443 36778889999999999999999999998664 677777777777
Q ss_pred HHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 245 LFWCG-----RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSA-KEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 245 ~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
..-.. +.+...++|+++... -|.......+.-.+.. |..+ ..+..++..++..|++ .+|+.|-..|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 63333 567788999998776 4554444333322222 2223 3466777788888865 566666666766
Q ss_pred cCCHHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 044251 319 EGLKNEALIIQMEMEKK----G----------IPSNAI--VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNI 381 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 381 (686)
.....-..+++...... | -+|+.. ++..+...|...|++++|++++++.++. .|+ +..|..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~ 233 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMT 233 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 65566566666665432 1 134443 4466788899999999999999999987 445 558888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh--------hhHhhh
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS--------HSYTAL 453 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~~l 453 (686)
-..++-..|++.+|.+.++........ |...-+.....+.+.|.. ++|..++......+..|-. .-....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 899999999999999999999876432 555555666677778766 8899999888766543322 122455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH----------HHHHHHHHHcCC-------HHHHHHHHHHHHhc
Q 044251 454 IHAYSVGGWHEKAYAAFENMLRE-----EIKPSIETY----------TALLDAFRRSGD-------TGMMMKIWKLMMSE 511 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~----------~~ll~~~~~~g~-------~~~a~~~~~~~~~~ 511 (686)
..+|.+.|++..|+..|..+.+. .-.-|.++| .-+++..-+... ...|.++|-.+...
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDK 391 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999888776543 112233333 333332211111 13455555555433
Q ss_pred CCCC------------CHHHHHHHHHHH---HHcCCHHHHHHHHHH-H----------H-hCCCCCCHHHHHHHHHHHHh
Q 044251 512 KVEG------------TRVTFNILLDGF---AKQGQYLEARDVVSE-F----------G-KIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 512 ~~~~------------~~~~~~~li~~~---~~~g~~~~A~~~~~~-~----------~-~~~~~p~~~~~~~li~~~~~ 564 (686)
.... +..--..+..-. .+...-+++...-.+ . . ....+.|. ..++.-+.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~GekL~~ 468 (517)
T PF12569_consen 392 PEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEKLLK 468 (517)
T ss_pred cccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHHHhc
Confidence 2100 000001111100 001111111111000 0 0 00001111 112333334
Q ss_pred cC-CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 565 GG-QTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 565 ~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
.. =+++|.++++-+.+.+ .-+..+|..-..+|.+.|.+--|++.+.+
T Consensus 469 t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 469 TEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33 4678999999999764 33688999999999999999999988764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-06 Score=89.58 Aligned_cols=437 Identities=14% Similarity=0.107 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHccCChh---HHHHHHHhcccCCCCC
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-----VSPRACSVLFPVLGRARMGD---DLMVLFKNLPQSKEFR 233 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~ 233 (686)
+.++.....+..|+..+++++|-+.++.++.++.+. -+-..|..+.....+.-+.- ....+++.+.. .+ +
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~-rf-t 244 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR-RF-T 244 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-cC-c
Confidence 455666677777777777777777777766652211 12244555555444432221 12233333332 11 2
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------------------CHHHH
Q 044251 234 D--AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR---------------------SAKEA 290 (686)
Q Consensus 234 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------------------~~~~a 290 (686)
| -..|++|...|.+.|.+++|.++|++.... ...+.-|..+..+|+.... +++..
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 2 356777888888888888888888776554 3344445555555543221 01112
Q ss_pred HHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHH
Q 044251 291 WEFFEKMNRKGV-----------KLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS------NAIVYNTLINAYCK 353 (686)
Q Consensus 291 ~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~ 353 (686)
+..|+.+..... +-+...|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 222222222110 001111111111 1123333334444444332 111 12234444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHH
Q 044251 354 SNQLEEAEGLFQEMKTKGLKPT---SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDM 430 (686)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 430 (686)
.|+++.|..+|++..+-..+-- ..+|......=.+..+++.|+++++.... .|.... + .+...+....
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ- 470 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQ- 470 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHH-
Confidence 5555555555555444322110 11222222222333344444444333322 121111 0 1111111100
Q ss_pred HHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 431 AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 431 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
..++ .+...|...+...-..|-++....+|+.+....+. ++...-.....+....-++++.++|++-+.
T Consensus 471 -~rlh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 -ARLH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred -HHHH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 0011 12344555566666667777777788877776442 333333333344556667777877777666
Q ss_pred cCCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCccHHHHHHHHHHHCCCC
Q 044251 511 EKVEGT-RVTFNILLDGFAK---QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA--YGRGGQTSKLPQLLKEMATLNIK 584 (686)
Q Consensus 511 ~~~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~ 584 (686)
.-..|+ -..|+..+.-+.+ ...++.|..+|++.++ |++|...-+--|+.+ =-+.|-...|+.+++++-. +++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCC
Confidence 533333 3466666655553 2367788888888877 555543322222222 1245777778888887654 344
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 585 PD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 585 pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
+. ..+|+..|.--...=.+.....+++++++. -||..+-..|+
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mcl 662 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHH
Confidence 43 345666665433333344555666666653 35554433333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-09 Score=118.81 Aligned_cols=215 Identities=10% Similarity=-0.018 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---------ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLG---------RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+++|+++|+.+...+|... ..+..++.++. ..+++++|...+++..+..+ .+..++..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~ldP~~a--~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSI--APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 4577777777777666442 44544444332 12335666666666655332 456666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQM 330 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (686)
+++|...|++..+.+ +.+...+..+...+...|+ +++|...++++++.++. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 777776666666553 2234455555666666666 66666666666665432 22222233334445666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 331 EMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 331 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
++.....+.+...+..+..++...|++++|...++++...... +....+.+...|+..| +.+...++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 6655432224444555666666666666666666665443111 2223344444444444 34555444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-07 Score=97.81 Aligned_cols=435 Identities=12% Similarity=0.035 Sum_probs=285.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQ---EPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
-..++-..+..++....--++.+ .....++..|..+.-++.+.|+++.+.+.|++... ........|+.+...|..
T Consensus 291 ~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 291 EESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSA 369 (799)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHH
Confidence 34455566666776544444333 33345779999999999999999999999998776 344677889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc---
Q 044251 248 CGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK--GV--KLSQEVVGALMKSFCDE--- 319 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~--- 319 (686)
+|.-..|+.++++-....-.| |...+-..-..|.+.-+..++++++-.+++.. +. ......|..+.-+|...
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 999999999999876542124 44455555566666554478888888777762 11 12233444444333321
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 320 --------GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 320 --------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
....++++.+++..+.+.. |..+...+.--|+..++++.|.+..++..+.+-.-+...|..|.-++...++
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 1235677888888877544 3333334555677889999999999999998666688999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHc---------------------CC-----C
Q 044251 392 PEIVEKLLLELQDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRV---------------------GI-----K 444 (686)
Q Consensus 392 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~---------------------~~-----~ 444 (686)
+.+|+.+.+...+. .++ ......-+..-...++. +++......+... |. .
T Consensus 529 ~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~-e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 529 LKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDR-EEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccH-HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 99999999887643 111 00000001111111122 3333333222210 00 0
Q ss_pred C--ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044251 445 P--TSHSYTALIHAYSVGGWHEKAYAAFENMLREEI--KPS------IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE 514 (686)
Q Consensus 445 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 514 (686)
+ ...++..+..- .. -+.+.+..-.. +..... .|+ ...|......+.+.+..++|...+.+..... +
T Consensus 606 ~~~a~s~sr~ls~l-~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~ 681 (799)
T KOG4162|consen 606 PTDAISTSRYLSSL-VA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-P 681 (799)
T ss_pred ccccchhhHHHHHH-HH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-h
Confidence 0 01111111111 10 00000000000 111111 122 1234555667778888899988888887654 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH--HHHHHHHCCCCCCHHHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ--LLKEMATLNIKPDSVTYST 592 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~pd~~~~~~ 592 (686)
-....|......+...|...+|.+.|....... +-++.+..++..++.+.|+..-|.. ++.++.+.+ +-+...|..
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~ 759 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYY 759 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 677788888888889999999999999988776 4467889999999999999888888 999999764 337999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 593 MIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
++..+.+.|+.++|.+.|..+.+.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhh
Confidence 999999999999999999988765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-08 Score=106.09 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+..+.+.|-..|+++.|+...++.++.. |-.+..|..-...|-+.|++.+|.+.++....+... |..+-+-.+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 3444555555666666666666665553 333455555555666666666666666665555422 55555555555556
Q ss_pred cCCccHHHHHHHHHHHCCCCCCH------HHH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 565 GGQTSKLPQLLKEMATLNIKPDS------VTY--STMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~~g~~pd~------~~~--~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
.|++++|.+++......+..|-. .+| ...+.+|.+.|++..|++.|....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544432211 111 233456666666666665554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-08 Score=102.36 Aligned_cols=287 Identities=13% Similarity=0.013 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 302 VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
..-+.........-|...+++.+..++.+.+.+. .++....+..-|.++.+.|+..+-..+=.+|.+.-+. ...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence 3445666777778888899999999999999987 4567777777888999999988888888888876333 6678998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcC
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (686)
+.--|...|...+|.+.|.+....... =...|-..-..|+-.+.. |.|+..|....+.-.. ....+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh-dQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH-DQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH-HHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 988888889999999999987643221 133455566667666565 7888888877664211 1112222344578899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCCHHHHHHHHHHHHHcCCHHH
Q 044251 462 WHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----K--VEGTRVTFNILLDGFAKQGQYLE 535 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~ 535 (686)
..+.|...|.+.... .+-|+..++-+.-..-..+.+.+|..+|+..+.. + ...-..+++.|..+|.+++.+++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999998874 3456777887777777889999999999988732 1 11234578999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 536 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
|+..+++.+... +.+..++.+++-.|...|+++.|++.|.+.+ .+.||..+...++..+
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 999999998876 5599999999999999999999999999998 5789887777777643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-09 Score=101.01 Aligned_cols=230 Identities=15% Similarity=0.138 Sum_probs=170.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 044251 309 VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF-NILMDAYS 387 (686)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 387 (686)
-+.+.+.|.+.|.+.+|.+.++...+. .|-+.||..|-.+|.+..+++.|+.+|.+-++. .|-.+|| .-+.+++.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 356778888889999998888888776 346778888888898999999999998887765 3444554 44666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHH
Q 044251 388 RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAY 467 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (686)
..++.++|.++|+...+.. ..++....++...|.-.++. +.|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P-E~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP-EMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh-HHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 7888888888888887653 22444455555555555444 8888888888888876 7778888888888888888888
Q ss_pred HHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 468 AAFENMLREEIKPSI--ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 468 ~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
..|++.+..-..|+. ..|..+.......|++..|.+.|+..+..+ +.+...+|.|.-.-.+.|++++|..+++...+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888887765443443 567777777777788888888888777665 55667777777777778888888888877655
Q ss_pred C
Q 044251 546 I 546 (686)
Q Consensus 546 ~ 546 (686)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 3
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-07 Score=98.80 Aligned_cols=407 Identities=11% Similarity=0.024 Sum_probs=276.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC-CCCCHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK-EFRDAHVYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l 241 (686)
....+..+.-.+.+.|++..+.+.|+.....-- .....|..+...+...|.-..|..+++.-.... .+++...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 566777888899999999999999999876422 233788999999999999999999998765433 23455555555
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHCCCCCCH
Q 044251 242 ISGLFW-CGRYDDAWKAYEAMEAN--NV--RPDHVTCSIMITAMRKNGR----------SAKEAWEFFEKMNRKGVKLSQ 306 (686)
Q Consensus 242 i~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~g~----------~~~~a~~~~~~m~~~~~~~~~ 306 (686)
...|.+ -+.++++++.-.+.... +. ......|..+.-+|...-. ...++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 555554 45667776666655541 11 2233455555555542211 156788999999888654 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-GLKPTSATFNILMDA 385 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~ 385 (686)
...-.+.-.|+..++++.|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+...+. |. |......-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhh
Confidence 4444455567888999999999999999877779999999999999999999999999887654 21 11111111222
Q ss_pred HHhcCCHHHHHHHHHHHHHc---------------------CC-------CCCHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044251 386 YSRRMQPEIVEKLLLELQDM---------------------GL-------EPNAKSYTCLISAYGRPRKMSDMAADAFLR 437 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~---------------------~~-------~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~ 437 (686)
-...++.+++......+... |+ .-...++..+....... . ..+..- ..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~-~~~~se-~~ 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--L-KSAGSE-LK 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--h-hhcccc-cc
Confidence 22344555544443333211 00 00112222222211100 0 000000 00
Q ss_pred HHHcCC--CCC------hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 438 MKRVGI--KPT------SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 438 ~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+..... .|+ ...|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|...+
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111111 122 234566677888899999999888888764 34566778888888899999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 510 SEKVEGTRVTFNILLDGFAKQGQYLEARD--VVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 510 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..+ |.++....++..++...|+..-|.. ++.++.+.+ +.+...|-.|+..+.+.|+.+.|.+.|....+.
T Consensus 712 ~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 876 6678889999999999998887777 999999988 559999999999999999999999999988754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-07 Score=88.44 Aligned_cols=426 Identities=13% Similarity=0.085 Sum_probs=221.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+.-+...+++..|+.+++.....+.... ..+-.-++..+.+.|++++|+..|..+.+. ..++...+-.|...+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 5556667788888888887765432221 122222445566888888888888877663 33666777777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIM-ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
+.+|..+-.. .|+....+.| +....+.++ -++-..+.+.+.. ...--.+|.......-.+.+|.+++
T Consensus 107 Y~eA~~~~~k------a~k~pL~~RLlfhlahklnd-Ek~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 107 YIEAKSIAEK------APKTPLCIRLLFHLAHKLND-EKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHhh------CCCChHHHHHHHHHHHHhCc-HHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888766544 2444444433 344445554 4444444444332 1122333444444445577788888
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 330 MEMEKKGIPSNAIVYNT-LINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
..+...+ |.....|. +.-+|.+..-++-+.+++.-.+.. +.-+....|...-...+.-+-..|+.-.+.+.+.+-.
T Consensus 175 krvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 175 KRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 7777652 23344443 334566666677777777666554 2213334443332222221111222222222221100
Q ss_pred --------------------------C-----CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 409 --------------------------P-----NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 409 --------------------------p-----~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
| -+..-..|+--|.+.++. .+|..+.+.+. +. +..-|-.-.-.+
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV-qeA~~L~Kdl~---Pt-tP~EyilKgvv~ 326 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV-QEAISLCKDLD---PT-TPYEYILKGVVF 326 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH-HHHHHHHhhcC---CC-ChHHHHHHHHHH
Confidence 0 001111122223333332 33444333321 10 111111111111
Q ss_pred HhcCC-------HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 458 SVGGW-------HEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 458 ~~~g~-------~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
...|+ ..-|...|+-.-..+..-|. ..-.++...+.-..+++.++..++.+..--...|...+ .+..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence 22221 22233333322222221111 12233333444455666676666666654433344333 46778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNM-LMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYS-TMIYAFVRVRDFKRAF 607 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~A~ 607 (686)
.|++.+|+++|-.+....++ |..+|-+ |..+|.+.+.++-|..++-++.. ..+..++. .+.+.|.+.+.+=-|.
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887655544 5666654 56788899999998887665542 22444443 3446888999988888
Q ss_pred HHHHHHHHCCCCCCHHHH
Q 044251 608 FYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 608 ~~~~~m~~~g~~p~~~~~ 625 (686)
+.|..+.... |+++-|
T Consensus 482 KAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 482 KAFDELEILD--PTPENW 497 (557)
T ss_pred HhhhHHHccC--CCcccc
Confidence 8888877644 666544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-09 Score=101.15 Aligned_cols=197 Identities=11% Similarity=-0.010 Sum_probs=92.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
.+..++..+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33344444444444444444444443321 1334444444455555555555555555444332 222333444444444
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGV-KLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
..|+ +++|.+.++++..... ......+..+...+...|++++|...+....... +.+...+..+...+...|++++|
T Consensus 111 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGK-YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred Hccc-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444 5555555555443211 1122334444455555555555555555555442 22344555555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
...+++.... ...+...+..++..+...|+.+.|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555544 12233444445555555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-07 Score=90.64 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+..-++.....|.+++|++....++...|+.. .++..-+.++.+.+++++|+.+.+.-..... .++.. .--+-+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~--~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~-fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDE--DAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFF-FEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcH--hhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhh-HHHHHH
Confidence 6777778899999999999999999999876544 6777777788899999999987776442100 11111 223445
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 323 (686)
+.+.+..++|+..++.+. +.+..+...-...+.+.|+ +++|+++|+.+.+.+..-. ...-..++..-.. -
T Consensus 89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----L 159 (652)
T ss_pred HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----h
Confidence 668899999999988322 2233466777788889998 9999999999988764321 1222222211110 0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------CC------CCHH-HHHHHHHHHHhc
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG-------LK------PTSA-TFNILMDAYSRR 389 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~------p~~~-~~~~ll~~~~~~ 389 (686)
.+ ++.+..... ...+-..+......+...|+|.+|+++++.....+ -. -... .-..|..++-..
T Consensus 160 ~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QV-QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hH-HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 11 112211111 11122233334556677899999999988873211 00 0011 112345566778
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 044251 390 MQPEIVEKLLLELQDMGL 407 (686)
Q Consensus 390 ~~~~~a~~~~~~m~~~~~ 407 (686)
|+.++|..+|...+....
T Consensus 238 Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP 255 (652)
T ss_pred cchHHHHHHHHHHHHhcC
Confidence 999999999988887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-09 Score=100.87 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...+..+...+...|++++|++.|+.+....|.. ...+..++..+...|++++|.+.+++..... +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD--YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4566778899999999999999999999887654 4788889999999999999999999887744 357788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
.+...|++++|.+.|++.......+ ....+..+...+...|+ +++|.+.+.+..+.... +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998652222 34566677778888998 99999999999987533 567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
++|...+++.... .+.+...+..++..+...|+.++|..+++.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999887 4557778888889999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-07 Score=88.26 Aligned_cols=400 Identities=9% Similarity=0.040 Sum_probs=251.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
..+...+.+.|+|++|+..|..+.+.+ ..+...+..++..+.-.|.+.+|..+-.+.+. ++-.-..|...-.+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHH
Confidence 356777889999999999999998853 34457777888888888999999998877654 34444455556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGA-LMKSFCDEGLKNEAL 326 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~ 326 (686)
.|+-++-..+-+.+... ...--+|.......-. +++|+++|.+.+..+ |+-...|. +.-.|.+..-++-+.
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHH
Confidence 77766655555554321 1111222222222222 789999999988754 34344443 334566777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHCCC------------CCC-----
Q 044251 327 IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQE--------------MKTKGL------------KPT----- 375 (686)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------------m~~~g~------------~p~----- 375 (686)
++++-.... ++.+....|..+....+.=.-..|.+-..+ +...++ -|.
T Consensus 206 evl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 206 EVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 888877765 555666666665554442211122221222 111110 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCC---CChHHHHHHHHHHHHHcCCCCChh-hH
Q 044251 376 SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA-YGRP---RKMSDMAADAFLRMKRVGIKPTSH-SY 450 (686)
Q Consensus 376 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~---~~~~~~A~~~~~~~~~~~~~~~~~-~~ 450 (686)
...-..|+--|.+.+++.+|..+.+++.- ..|-......+..+ ++.. ......|...|.-+-+.+..-|.. --
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 01112345556789999999998877631 12333322222222 2221 122345667776665555544432 24
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 530 (686)
..+..++.-..++++.+..+..+..- +..|......+.++++..|++.+|+++|-.+....++.+..-...|.++|.++
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 45666677777899999999888775 33344444557899999999999999999887666665665666788899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHH
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMT-YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYS 591 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 591 (686)
++...|++++-++.. +.+..+ ...+..-|.+.+.+--|.+.|+++.. +.|+++-|.
T Consensus 442 kkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred CCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 999999998876542 223333 34445678899998888889988875 467776664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-08 Score=110.82 Aligned_cols=181 Identities=11% Similarity=0.067 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSR---------RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 427 (686)
+++|..+|++..+.... +...|..+..++.. .+++++|...+++..+.... +...+..+...+...|+.
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 45666666666654222 23334433333321 12244444444444443211 233333333333333333
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWK 506 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 506 (686)
++|...|++..+.++. +...+..+..+|...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 355 -~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 -IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred -HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 4445555444444322 2334444444555555555555555555442 2221 112222223333445555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
++++...+.+...+..+..++...|++++|...++++
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5443332223333444444444555555555555444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-09 Score=110.60 Aligned_cols=249 Identities=15% Similarity=0.096 Sum_probs=142.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044251 259 EAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP 338 (686)
Q Consensus 259 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 338 (686)
-.+...|+.|+.+||..+|.-||..|+ .+.|- +|.-|.-...+.+...|+.++......++.+.+. .
T Consensus 14 a~~e~~gi~PnRvtyqsLiarYc~~gd-ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALHEISGILPNRVTYQSLIARYCTKGD-IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHhcCCCchhhHHHHHHHHcccCC-Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444555555555555555555554 44444 5555554444445555555555544555444443 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHH-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 339 SNAIVYNTLINAYCKSNQLEE-----------------------AEGLFQEMKT-KGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~-----------------------A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
|-..+|..|..+|...||+.. ...++..+.- .+.-||..+ ++....-.|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHH
Confidence 445555555555555555332 2222222111 112223222 2223334455566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
+.+++..+....-. .+..+ .++-+.......++-..+.....+ .++..+|.+++.+-.-+|+.+.|..++.+|+
T Consensus 158 llkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 66665554322111 11111 355555544443444444444333 4788888888888888888999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 044251 475 REEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQ 532 (686)
Q Consensus 475 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 532 (686)
+.|++.+.+-|..++-+ .++...++.+++.|.+.|+.|+..|+...+-.+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888877777755 78888888888888888888888888877777666555
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-10 Score=115.82 Aligned_cols=91 Identities=22% Similarity=0.340 Sum_probs=80.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 292 EFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
.++-.+...|+.|+..||..+|.-||..|+++.|- +|.-|..+..+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999998 9999988888888999999999988888887775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 044251 372 LKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 372 ~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
.|...||..|..+|...||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 5788899999999999999765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-08 Score=102.16 Aligned_cols=248 Identities=19% Similarity=0.199 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-----GL-KPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN 410 (686)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 410 (686)
+.-..+...|...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i----- 270 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI----- 270 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----
Confidence 333445566778888888888888888776543 21 12222 2233556666677777777766665421
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-H
Q 044251 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE-----EI-KPSI-E 483 (686)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~ 483 (686)
....++.. . ..-..+++.|..+|.+.|++++|...++...+- +. .|.+ .
T Consensus 271 ------~e~~~G~~--h----------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 271 ------REEVFGED--H----------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred ------HHHhcCCC--C----------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 11111110 0 001344555666677777776666666554331 11 2222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC---
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSE---KVE----GTRVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQ--- 549 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--- 549 (686)
.++.+...|...++++.|..+++...+. -+. .-..+++.|...|...|++++|.+++++++.. +-.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 4666677788888888888888876654 111 23468899999999999999999999987632 111
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----LNI-KPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
-....++.|...|.+.++..+|.++|.+... .|. .|+ ..+|..|..+|.+.|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1245688899999999999999999987653 222 233 5789999999999999999999998876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=81.16 Aligned_cols=50 Identities=48% Similarity=0.909 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 339 SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=81.62 Aligned_cols=49 Identities=39% Similarity=0.686 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV 598 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 598 (686)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-08 Score=101.54 Aligned_cols=244 Identities=18% Similarity=0.221 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKK-----GI-PSNA-IVYNTLINAYCKSNQLEEAEGLFQEMKTK-----GL- 372 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 372 (686)
..+...+...|...|+++.|..+++...+. |. .|.+ ...+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888888888888888888877654 21 1222 23345778899999999999999998753 32
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-hhhH
Q 044251 373 KPT-SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT-SHSY 450 (686)
Q Consensus 373 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 450 (686)
.|. ..+++.|..+|.+.|++++|..+++...+. ++...... .+. ...+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~~~~-~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLLGAS-HPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhhccC-hHHHHHHH
Confidence 222 237788888999999999999888776431 11100000 011 1224
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCC
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLRE---EIKPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEK-------VEGT 516 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~ 516 (686)
+.++..|+..+++++|..+++...+. -+.++ ..+++.+...|...|++++|.+++++++... ..-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 45566777788888888888766442 11122 3678888999999999999999999887541 2223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-C-CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGK----IGLQ-P-TLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
...++.+...|.+.+++.+|.++|.+... .|.. | ...+|..|+..|.+.|++++|+++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55778888899999999999999887542 2321 2 35689999999999999999999988776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-06 Score=86.51 Aligned_cols=425 Identities=14% Similarity=0.091 Sum_probs=251.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
-+..++..=+-.+++.+.|++|+.+.+.-....... ..+..-+-+..+.++.|+|+..++.... .+..+...-
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~ 116 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELR 116 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHH
Confidence 356667777888999999999997666544321111 1112334455689999999999994433 566678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDH--VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
...+.+.|++++|+++|+.+.+.+. ++. ..-..++.+-.. -.+. +.+.... ....+...+-.....+...
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~-----l~~~-~~q~v~~-v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA-----LQVQ-LLQSVPE-VPEDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh-----hhHH-HHHhccC-CCcchHHHHHHHHHHHHhc
Confidence 8999999999999999999987653 222 111122221111 1111 1221111 1111233334445567789
Q ss_pred CCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHH
Q 044251 320 GLKNEALIIQMEMEKKG-------IPSN-------AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA----TFNI 381 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g-------~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ 381 (686)
|++.+|+++++.....+ -..+ ..+...|..++-..|+.++|..++...+...+. |.. .-|.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NN 267 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNN 267 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcc
Confidence 99999999999883221 1110 123344666777899999999999999887543 432 2333
Q ss_pred HHHHHHhcCCHH-HHH------------HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChh
Q 044251 382 LMDAYSRRMQPE-IVE------------KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSH 448 (686)
Q Consensus 382 ll~~~~~~~~~~-~a~------------~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 448 (686)
|+.+-....-++ .++ .++..+... -.-....-+.++..|... . +.+.++....... .|. .
T Consensus 268 Lva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~tnk--~-~q~r~~~a~lp~~--~p~-~ 340 (652)
T KOG2376|consen 268 LVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFTNK--M-DQVRELSASLPGM--SPE-S 340 (652)
T ss_pred hhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--H-HHHHHHHHhCCcc--Cch-H
Confidence 333221111111 111 111111111 011122223344444432 1 3444444433322 233 3
Q ss_pred hHhhhHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCCHH
Q 044251 449 SYTALIHAYS--VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWK--------LMMSEKVEGTRV 518 (686)
Q Consensus 449 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~ 518 (686)
.+.+++..+. +...+.+|.+++...-+....-.....-..++.....|+++.|.+++. .+.+.+..| .
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--G 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--h
Confidence 3444444332 233577888888887765332234666777788899999999999999 565555444 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH----HHHhcCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKI--GLQPTLMTYNMLMN----AYGRGGQTSKLPQLLKEMATLNIKPDSVTYST 592 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 592 (686)
+...++..+.+.++.+.|..++.+..+. .-.+.......+++ .-.+.|+-++|..+++++.+.+ ++|..+...
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~ 497 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHH
Confidence 5566777788888777777777665421 00122234444443 3447899999999999999753 568899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 044251 593 MIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m 613 (686)
++.+|++. +.+.|..+-+++
T Consensus 498 lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhcC
Confidence 99998864 678887776554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-05 Score=78.54 Aligned_cols=403 Identities=14% Similarity=0.035 Sum_probs=251.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
..+.....+..+...++-+.|+.....+... ..++..-..+...+-+.++-.++.-.+..... ..+.-. ..|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvr-ecp~aL----~~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIR-ECPMAL----QVI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHH-hcchHH----HHH
Confidence 4455567788888888888888766554322 23333333333333333333233222222221 010111 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK--NGRSAKEAWEFFEKMNRK-GVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 319 (686)
.++.+-+ +..+...-..|-...++|...+....+.+++. .++ ...+...+-.+... -.+-|......+.+.+...
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~-hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFK-HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcc-cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 1221111 01111111223233334444333333433332 222 23333333333322 2555778889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
|+.++|...|+.....++- ++.........+.+.|+++....+...+.... +-+...|-.-+......++++.|+.+-
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred cCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999998876321 33334444455677899998888887776542 123444554555556778899999888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK 479 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 479 (686)
++.++.... +...|-.--..+...++. ++|.-.|+......+- +...|..|+..|...|.+.+|..+-+...+. .+
T Consensus 324 eK~I~~~~r-~~~alilKG~lL~~~~R~-~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPR-NHEALILKGRLLIALERH-TQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQ 399 (564)
T ss_pred HHHhccCcc-cchHHHhccHHHHhccch-HHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hh
Confidence 888765321 233332222334445454 7788899988776433 7889999999999999999999888777664 45
Q ss_pred CCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044251 480 PSIETYTALL-DAFR-RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNM 557 (686)
Q Consensus 480 p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 557 (686)
.+..+.+.+. ..|. ...--++|.+++++.+... |.-....+.+...|...|+.+.++.++++.+.. .||....+.
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~ 476 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNH 476 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHH
Confidence 5666666653 3332 2234578999999988765 455667888899999999999999999997753 679999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
|...+.-.+.+.+|...|..++. +.|+
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 99999999999999999998885 3554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-06 Score=79.80 Aligned_cols=294 Identities=13% Similarity=0.089 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH-HHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY-NAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 241 (686)
...++..++..+++..++.+|++++..-.+..|. +......++..|.+..++..|...|+++.... |...-| -.-
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~ 84 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ 84 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 4455778899999999999999999998887653 34788889999999999999999999988732 332222 234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA-M-RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~-~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
...+.+.+.+..|+.+...|... |+...-..-+.+ . ...++ +..+..++++....| +..+.+.......+.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~D-l~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGD-LPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccccc-CcchHHHHHhccCCC---ccchhccchheeecc
Confidence 67788899999999999988752 333222222222 2 22333 667777777765433 555666666777899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCH----------
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK-------------PTS---------- 376 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~---------- 376 (686)
|+++.|.+-|+...+.+--.....||..+..| +.|+++.|++...++.++|++ ||+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 99999999999988875444677888766555 779999999999999887753 111
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhH
Q 044251 377 -----ATFNILMDAYSRRMQPEIVEKLLLELQD-MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY 450 (686)
Q Consensus 377 -----~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 450 (686)
..+|.-...+.+.++.+.|.+.+..|.- ..-..|++|...+.-.=.. ++. ....+-+.-+....+- ...|+
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p-~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARP-TEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCc-cccHHHHHHHHhcCCC-ChHHH
Confidence 1122222334566777777777666631 1223345554443222111 122 1122233333333332 34566
Q ss_pred hhhHHHHHhcCCHHHHHHHHH
Q 044251 451 TALIHAYSVGGWHEKAYAAFE 471 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~ 471 (686)
..++-.||++.-++.|-+++.
T Consensus 314 ANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHh
Confidence 667777777777777766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-07 Score=90.05 Aligned_cols=219 Identities=11% Similarity=-0.053 Sum_probs=150.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLV--SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDA 254 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 254 (686)
.+..+.++..+..++...+... .+..|..++.++.+.|+.++|+..|++..... +.+..+|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455677777777776543222 24667888888899999999999998887744 36788999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 255 WKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEME 333 (686)
Q Consensus 255 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (686)
.+.|+...+. .| +..+|..+..++...|+ +++|.+.|++..+... +..........+...++.++|...+....
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998876 44 45677777788888888 9999999999988653 32222222233445678999999987765
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044251 334 KKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---GL--KP-TSATFNILMDAYSRRMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 334 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 406 (686)
... +++...+ . ......|++..+ +.++.+.+. .+ .| ....|..+..++.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2232222 2 223345555444 344444432 11 11 23468888999999999999999999988764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-05 Score=75.63 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=125.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
.|+. ..|+.....+.+..+- |...|..-..+|...|.+..|+.=++...+. -..+..++.-+-..+...|+.+..+.
T Consensus 168 ~GD~-~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 168 SGDC-QNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred CCch-hhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHH
Confidence 3444 5566666666665432 6666777777777777777777776666554 23345566666666777777777777
Q ss_pred HHHHHHhcCCCCCHH----HHHH---H------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 044251 504 IWKLMMSEKVEGTRV----TFNI---L------LDGFAKQGQYLEARDVVSEFGKIGLQPTLMT---YNMLMNAYGRGGQ 567 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~----~~~~---l------i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~ 567 (686)
..++.++.+ |+.. .|-. + +......+++.++.+-.+...+....-.... +..+-.++...|+
T Consensus 245 ~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 245 EIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 777776553 2221 1111 1 1223456777788877777766543322333 3456667778899
Q ss_pred ccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 568 TSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 568 ~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+.+|++.-.+.++ +.|| ..++-.-..+|.-...++.|+.-|+.+.+.+
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 9999999999985 4665 8888888899999999999999999998754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-07 Score=90.04 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
..+......+...|++++|+..|+.++...|.. +.+|..++..+...|++++|+..|++..+..+ .+..+|..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 446667778899999999999999999988754 58999999999999999999999999887433 578889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
+...|++++|++.|+...+. .|+..........+...++ .++|.+.|.+..... .++...+ .+.. ...|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~-~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLD-PKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCC-HHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCH
Confidence 99999999999999999876 4554322222222334455 899999997766432 2232222 2222 23455544
Q ss_pred HHHHHHHHHHC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 325 ALIIQMEMEKK---GI---PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF 379 (686)
Q Consensus 325 A~~~~~~~~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 379 (686)
+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.++. |.+-+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~ 273 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEH 273 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHH
Confidence 3 244444321 11 113467999999999999999999999999987533 44433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-07 Score=80.61 Aligned_cols=199 Identities=15% Similarity=0.025 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+....+.-.+.+.|++..|..-++++++.+|... .+|..+...|.+.|..+.|.+.|++.....+ .+..+.|.....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHH
Confidence 3444566677777888888888888887776554 6777777777777777777777777666333 566677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
++..|++++|...|++....-.-+ -..+|..+.-+..+.|+ .+.|...|++.++.... ...+...+.+...+.|++.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 777777777777777776541111 12455555555556666 67777777777665432 3445555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
.|...++.....|. ++....-..|..-...|+.+.+-++=..+..
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666655544 5555555566666666666666555444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-06 Score=85.32 Aligned_cols=200 Identities=9% Similarity=-0.032 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEF-RD-AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
..+..+...+...|+.+.+.+.+......... .+ ..........+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 44455555555556555554444443321110 12 2222233445566778888888888776652 223333332 11
Q ss_pred HHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 279 AMRK----NGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS 354 (686)
Q Consensus 279 ~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 354 (686)
.+.. .+. ...+.+.+... .............+...+...|++++|...++...+.. +.+...+..+..+|...
T Consensus 85 ~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGM-RDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccC-chhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1211 222 34444444431 11122223444556667778888888888888888774 33567777888888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 355 NQLEEAEGLFQEMKTKGL-KPTS--ATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
|++++|..++++...... .++. ..|..+...+...|++++|..+++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888776432 1222 24556777888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-06 Score=90.02 Aligned_cols=186 Identities=11% Similarity=-0.047 Sum_probs=134.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 178 GLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 178 g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+...|+..|=+..+.++... .+|..++..|....+...|.+.|++.-+... -++..+.++...|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~a--paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLA--PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 346778888888887776554 7899999999988888899999998876433 5778889999999999999999998
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044251 258 YEAMEANN-VRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG 336 (686)
Q Consensus 258 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 336 (686)
.-...+.. ...-...|..+--.+.+.++ ...+...|+..++..+. |...|..++.+|...|++..|.++|.+.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n-~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHN-LHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccc-hhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 43332221 00112234444444556666 88899999999887654 78899999999999999999999998887663
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 337 IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
+. +...---.....+..|.+.+|+..+.....
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 222222233345667888888888877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-06 Score=84.59 Aligned_cols=201 Identities=13% Similarity=-0.008 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPR-ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
...+..+...+...|+.+.|.+.+....+..+...++. ........+...|++++|...+++.... .+.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-h
Confidence 34555666777778889998888888887766555543 3334455677889999999999988774 3355555553 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 243 SGLFW----CGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC 317 (686)
Q Consensus 243 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (686)
..+.. .+..+.+.+.+... ....|+. .....+...+...|+ +++|.+.+++.++... .+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~p-~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRALELNP-DDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 23333 45555555555541 1223443 344455567788888 9999999999998753 35678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 318 DEGLKNEALIIQMEMEKKGIP-SNA--IVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~g~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
..|++++|...++........ ++. ..|..+...+...|++++|..+|++....
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999998876321 222 34567888999999999999999998644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-06 Score=95.75 Aligned_cols=336 Identities=10% Similarity=-0.046 Sum_probs=210.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGI------PSN--AIVYNTLINAY 351 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~~ 351 (686)
+...|+ ...+..+++.+.......+..........+...|+++++..++......-. .+. ......+...+
T Consensus 384 l~~~g~-~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGE-LSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCC-hHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 334555 666666665542111111223334455566788999999998887754311 111 12223334556
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHhc
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTS----ATFNILMDAYSRRMQPEIVEKLLLELQDMGLE---P--NAKSYTCLISAYG 422 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---p--~~~~~~~ll~~~~ 422 (686)
...|++++|...+++....-...+. ...+.+..++...|++++|...+.+....... + ....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999987763111121 24456677778899999999999887643111 1 1223344455566
Q ss_pred CCCChHHHHHHHHHHHHHc----CCC--C-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHH
Q 044251 423 RPRKMSDMAADAFLRMKRV----GIK--P-TSHSYTALIHAYSVGGWHEKAYAAFENMLREE--IKP--SIETYTALLDA 491 (686)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~ll~~ 491 (686)
..|+. +.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 543 ~~G~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 543 AQGFL-QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HCCCH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 67776 7788888776543 211 1 12334556667778899999999998876531 112 22444556667
Q ss_pred HHHcCCHHHHHHHHHHHHhcC--CCCCHH---H-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 044251 492 FRRSGDTGMMMKIWKLMMSEK--VEGTRV---T-FNILLDGFAKQGQYLEARDVVSEFGKIGLQPT---LMTYNMLMNAY 562 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~---~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 562 (686)
+...|+.+.|...+..+.... ...... . ....+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999998886531 111111 1 11123445568999999999877543221111 11245677788
Q ss_pred HhcCCccHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 563 GRGGQTSKLPQLLKEMATL----NIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~----g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
...|+.++|..+++++... |..++ ..++..+..++.+.|+.++|...+.++++..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999988753 33322 3466777788999999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-05 Score=74.39 Aligned_cols=331 Identities=13% Similarity=0.094 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHH-HHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAH-VYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 241 (686)
..+-...+...+..+|.+..|+..|..+.+.+|... .++...+..|...|+...|+.=|.++.+.. ||.. +..--
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHh
Confidence 445666788888899999999999999988766432 333444557778888888888888777632 4422 22233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
...+.+.|.+++|..=|+..... .|+..+ ...+..+... .++-+. ....+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~-~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLAL-IQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHh-HHHHHH----------------HHHHHHHHhcCCc
Confidence 45788899999999999988876 443221 1111111111 122222 2223344556788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
...|......+++.. +-|+..|..-..+|...|++..|+.-++...+..-. +..++.-+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888888763 347788888888999999999988877776655333 555566677778888999988888888
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
.++. .||...+-.. |- .+ .+..+.++.|. .....++|.++++..+...+......
T Consensus 249 CLKl--dpdHK~Cf~~---YK---kl-kKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPF---YK---KL-KKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHcc--CcchhhHHHH---HH---HH-HHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 8764 4543322111 11 00 22222222222 23456677777777777776533222
Q ss_pred HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 482 IE---TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 482 ~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
.. .+..+-.++...|++.+|++.-.+++... +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22 23344455566788888888888887665 5567788778888888888888888888887665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-06 Score=78.41 Aligned_cols=185 Identities=16% Similarity=0.067 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS 315 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (686)
+...|...|...|++..|.+-+++.++. .|+ ..+|..+...|.+.|. .+.|.+.|++.+..... +..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 3444555666666666666666666555 333 3455555556666665 56666666666655322 45556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 316 FCDEGLKNEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
+|..|++++|.+.|+..... ...--..+|..+.-+..+.|+++.|...|++.++.... ...+.-.+.......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 66666666666666665543 12223445555555666666666666666666554322 22334445555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 427 (686)
|..+++.....+. ++....-..|..-...|+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence 6666666555443 5555555555555555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-05 Score=77.06 Aligned_cols=400 Identities=15% Similarity=0.067 Sum_probs=236.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
.......|+++.|+.+|-.++...|..+ ..|..-..+|+..|++++|++=-.+.....+ .=...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nh--vlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNH--VLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCcc--chhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhccc
Confidence 5567789999999999999999877643 7888888999999999998776655444222 235678899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHH------HHHHC---CCCCCHHHHHHHHHHHHh--
Q 044251 251 YDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFE------KMNRK---GVKLSQEVVGALMKSFCD-- 318 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~------~m~~~---~~~~~~~~~~~li~~~~~-- 318 (686)
+++|+..|.+-++. .|+ ...++.+..++... ..+.+.|. .+... ........|..++..+-+
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~----~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAYLED----YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHH----HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999998776 444 45555555555211 00111110 00000 000011122222221111
Q ss_pred --------cCCHHHHHHHHHHH-----HHC-------CCCC----------------------CHHHHHHHHHHHHHcCC
Q 044251 319 --------EGLKNEALIIQMEM-----EKK-------GIPS----------------------NAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 319 --------~g~~~~A~~~~~~~-----~~~-------g~~~----------------------~~~~~~~li~~~~~~g~ 356 (686)
-.++..+.-.+... ... +..| -..-.-.+..+..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00011111111000 000 0001 12235667777778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------HhcCCCChHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLIS-------AYGRPRKMSD 429 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-------~~~~~~~~~~ 429 (686)
++.|++-+....+.. -+..-++....+|...|.+..+...-....+.|.. ....|+.+-. +|.+.++. +
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~-~ 315 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY-E 315 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH-H
Confidence 888888888877764 25555666667777777777766666665555432 2233333333 34444343 6
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
.++..|.+.......|+ ...+....++++...+...- +.|.. .-...-...+.+.|++..|+..|.++
T Consensus 316 ~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 67777777655433322 22333444555555544433 22322 22222356677788888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHH
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSV 588 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 588 (686)
+... +.|...|....-+|.+.|.+..|+.-.+..++.. ++....|.-=..++.-..++++|.+.|.+.++. .|+..
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~ 460 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNA 460 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhH
Confidence 8776 6778888888888888888888888777777664 445566666666777777888888888888764 45544
Q ss_pred HHHHHHHHHH
Q 044251 589 TYSTMIYAFV 598 (686)
Q Consensus 589 ~~~~li~~~~ 598 (686)
-+...+.-|.
T Consensus 461 e~~~~~~rc~ 470 (539)
T KOG0548|consen 461 EAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHH
Confidence 4433333333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-06 Score=78.19 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=145.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 044251 203 CSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM-ITAMR 281 (686)
Q Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 281 (686)
+..++..+.+..++.+|++++..-.++.. .+......|..+|....++..|-+.|+++-.. .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 45556666788899999999988777443 67888899999999999999999999999775 6777666543 35566
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAE 361 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 361 (686)
+.+. +..|+++...|.... .........-.......+++..+..++++....| +..+.+.......+.|+++.|+
T Consensus 90 ~A~i-~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACI-YADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred Hhcc-cHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 7777 889999998886531 1111222222223345788888888888776433 6667777777788999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 362 GLFQEMKTK-GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 362 ~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
+-|+...+- |.. ....|+..+- ..+.++.+.|+++..++.+.|++
T Consensus 165 qkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 999998886 455 5567885554 45779999999999999888754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-05 Score=92.27 Aligned_cols=193 Identities=11% Similarity=-0.064 Sum_probs=81.4
Q ss_pred HHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--C----CCCHH--HHHHHHHHHH
Q 044251 210 LGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANN--V----RPDHV--TCSIMITAMR 281 (686)
Q Consensus 210 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--~~~~ll~~~~ 281 (686)
+...|+++.+...++.++......+..........+...|++++|..++......- . .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33445555555555554321111122222333444455566666666655543220 0 01111 1111112233
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 044251 282 KNGRSAKEAWEFFEKMNRKGVKLSQ----EVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP-SNAIVYNTLINAYC 352 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~ 352 (686)
..|+ +++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+...+.
T Consensus 464 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGD-PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 4444 56666666655542111111 12333444455566666666555554432 100 01123334444555
Q ss_pred HcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 353 KSNQLEEAEGLFQEMKTK----GLK--P-TSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
..|++++|...+++.... +.. + ....+..+..++...|++++|...+.+..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 566666666655554331 110 0 11223334444455566666665555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-05 Score=80.26 Aligned_cols=405 Identities=14% Similarity=0.125 Sum_probs=240.3
Q ss_pred HHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 044251 207 FPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGR 285 (686)
Q Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 285 (686)
..+....|+++.|+.+|.......+ +|-..|..-..+|+..|++++|++=-.+-++. .|+ .-.|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3455688999999999998777555 58999999999999999999998876666655 566 4689999999988998
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHC---CCCCCHHHHHHHHHHHHHc-----
Q 044251 286 SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEAL---IIQMEMEKK---GIPSNAIVYNTLINAYCKS----- 354 (686)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~---g~~~~~~~~~~li~~~~~~----- 354 (686)
+++|+.-|.+-++.... +...++.+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 86 -~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 -YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred -HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999887533 6667777777662111000000 111111100 0000111223333222111
Q ss_pred -----CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 044251 355 -----NQLEEAEGLFQEM-----KTKG-------LKP------------T----------SATFNILMDAYSRRMQPEIV 395 (686)
Q Consensus 355 -----g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a 395 (686)
.++..|.-++... ...| ..| | ..-...++++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111100 0000 011 0 01133456666666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC--C----hhhHhhhHHHHHhcCCHHHHHHH
Q 044251 396 EKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP--T----SHSYTALIHAYSVGGWHEKAYAA 469 (686)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~ 469 (686)
.+-+....+.. -+...++..-.+|...+.. ..+........+.|-.. + ...+..+..+|.+.++++.|+..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~-~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKY-AECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHH-HHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777766653 2333344444445544433 33444333333333210 0 11222234456666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 470 FENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 470 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
|.+.+.....|+. ..+....+++........-.+..- ..-.-.-...+.+.|++..|...|.++++.. +
T Consensus 321 ~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 321 YQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 7776654333322 222333344444433333222111 1112222566778999999999999999887 5
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEK 627 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 627 (686)
-|...|....-+|.+.|.+..|+.-.+...+. .|+ ...|..=+.++....+|+.|.+.|++.++.. |+. +....
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHH
Confidence 58999999999999999999999988888865 443 5666666777788889999999999998765 544 44455
Q ss_pred HHHHHHh
Q 044251 628 LRSILDV 634 (686)
Q Consensus 628 l~~~l~a 634 (686)
+.++..+
T Consensus 466 ~~rc~~a 472 (539)
T KOG0548|consen 466 YRRCVEA 472 (539)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-05 Score=84.38 Aligned_cols=381 Identities=11% Similarity=0.089 Sum_probs=211.5
Q ss_pred CHHHHHHHHH--HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 199 SPRACSVLFP--VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIM 276 (686)
Q Consensus 199 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 276 (686)
++.+...++. .|..-|+.|.|.+-.+.+ .+..+|..+...+.+.++++-|.-.+-.|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~a------------ 786 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA------------ 786 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhh------------
Confidence 3344444444 355667777776655543 45667777777777777777776666665432
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ 356 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 356 (686)
..-+.+++..+.|- .+-....-.....|.+++|+.+|++.... ..|=..|-..|.
T Consensus 787 ------------RgaRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~ 841 (1416)
T KOG3617|consen 787 ------------RGARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGM 841 (1416)
T ss_pred ------------hhHHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhccc
Confidence 01112222333221 11111222334678888888888877653 334455667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 357 LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 357 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
|++|+++-+.=-...+ ..||.....-+...++.+.|+++|++... +--..+..|. ........+.+
T Consensus 842 w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~-------e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 842 WSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK-------EYPKQIEQYVR 907 (1416)
T ss_pred HHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH-------hChHHHHHHHH
Confidence 8888887654322222 23566666666777888888888876521 1111121111 11122333333
Q ss_pred HHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 044251 437 RMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT 516 (686)
Q Consensus 437 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 516 (686)
++. |...|......+-..|+.+.|+.+|..... |..+++..+-.|+.++|-++-++- .|
T Consensus 908 ~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd 966 (1416)
T KOG3617|consen 908 RKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GD 966 (1416)
T ss_pred hcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------cc
Confidence 332 556777777777788888888888887654 556667777778888887775542 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHC
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG---------------QTSKLPQLLKEMATL 581 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------------~~~~A~~l~~~m~~~ 581 (686)
......|...|...|++.+|..+|-+... +...|..|..++ +.-.|.++|++.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--- 1034 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--- 1034 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---
Confidence 55666778888888888888888776532 222222222211 222333444432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHH
Q 044251 582 NIKPDSVTYSTMIYAFVRVRDFKRAFFYHK--------QMVKS--GQVPDVKSYEKLRSILDVKVATKNRRDKSAILGII 651 (686)
Q Consensus 582 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~ 651 (686)
|.. +...+..|.+.|.+.+|+++-= +++.. .-..|+...+.+.+.+.................-+
T Consensus 1035 g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1035 GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 211 2223345566666666655421 12222 22356777777777775443333333332233333
Q ss_pred HhcccchhhcccchhHHHHHHHh
Q 044251 652 NSKMGMVKAKKKGKKDEFWKYKK 674 (686)
Q Consensus 652 ~~~~~~~~~~~~~a~~~f~~~~~ 674 (686)
....++|+++.-.-.+.|-+++-
T Consensus 1110 ~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred HHHHHHHhcCCCchhHHHHHhcC
Confidence 34456677777666666666553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00031 Score=71.33 Aligned_cols=187 Identities=15% Similarity=0.083 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSV---GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKI 504 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 504 (686)
.+++..+++.....-..-+..+|..+...--. .+..+.....+++++..-..--.-+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 35667777766554333344455444332211 123566667777776542222235688888888899999999999
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 505 WKLMMSEKVEG-TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 505 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
|.++.+.+..+ .+.++++++..||. ++...|.++|+--++.- ..++.--...+.-+...++-..|..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999987666 78889999988775 78899999999855332 33445556677888889999999999999998877
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 584 KPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 584 ~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.|| ..+|..++.-=...|+...++++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776 579999999889999999999998887654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.6e-05 Score=79.92 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=144.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCC--------CCHHHHHHHHHH
Q 044251 173 LMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEF--------RDAHVYNAAISG 244 (686)
Q Consensus 173 ~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~ 244 (686)
.|..-|+.+.|.+-.+.+... .+|..++.++.+..++|-|.-.+..|...+.. .+...--.....
T Consensus 737 fyvtiG~MD~AfksI~~IkS~-------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD-------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh-------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 345678888888877777643 78999999999999998887766665442110 000111222333
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
....|..++|+.+|++.+. |..|=..|...|. +++|.++-+.--+.. =..||......+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~-w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGM-WSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhccc-HHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 4456677777777776654 3334444555565 777766655332221 12455556666666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 325 ALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 325 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
|++.|++.... --.++..| ..++....++.+.+. |...|.-....+...|+.+.|+.+|....+
T Consensus 877 AleyyEK~~~h----afev~rmL------~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGVH----AFEVFRML------KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCCh----HHHHHHHH------HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 77666543211 11111111 112222222333322 445555566666677888888887776543
Q ss_pred cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 405 MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 405 ~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
|-++++..|-.|+. ++|.++-++- -|......|.+.|-..|++.+|...|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~-~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKT-DKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCc-hHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44556666666665 5666555442 255666677788888888888888876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00012 Score=79.13 Aligned_cols=343 Identities=14% Similarity=0.139 Sum_probs=192.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQE-PSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
+++.....+.++...+...+-+++++++.-.. ++..+...-+.++....+. +..+.....+++..... | .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-P------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-h------hH
Confidence 45555666666666666666666666665442 2222222223333322232 23344555555443221 1 12
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
......++-+++|..+|+... .+..+.+.||.-. .+.+.|.++-++.. .+.+|..+.++-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i----~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI----GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh----hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 334445555666666666543 2333333333322 12455555444332 45667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
+.+|.+-|-+. .|+..|..++....+.|.|++-.+++...++..-.|... +.|+-+|++.++..+.++.+
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 77776655322 266677777777777777777777777666665554443 34677777777766655443
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044251 402 LQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481 (686)
Q Consensus 402 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 481 (686)
.-||......+-+-|...+.. +.|.-+|..+ .-|..|...+...|++..|.+.-++. .+
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y-~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMY-EAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhh-HHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 245666666666666665443 5555555433 34666667777777777776654433 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
..||..+-.+|...+.+.-| +|-..++-..+.-+.-|+..|...|-+++-+.+++..+-+. +....+|+-|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHH
Confidence 56676666666665554433 22223334445556777778888888888887777654322 2244566666666
Q ss_pred HHhc
Q 044251 562 YGRG 565 (686)
Q Consensus 562 ~~~~ 565 (686)
|.+-
T Consensus 1323 Ysky 1326 (1666)
T KOG0985|consen 1323 YSKY 1326 (1666)
T ss_pred HHhc
Confidence 6553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-05 Score=80.81 Aligned_cols=212 Identities=10% Similarity=0.036 Sum_probs=152.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR-MGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
.+-..+...++.++|+.++..+++..|... .+|.....++.+.| .+++++..++++..... .+..+|+....++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~y--taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNY--TVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHH
Confidence 444455567788999999999998877655 67777777777777 57889999988887433 677788877767777
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH
Q 044251 248 CGRY--DDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE---GLK 322 (686)
Q Consensus 248 ~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~ 322 (686)
.|+. ++++.+++.+.+.. +-+..+|+....++...|+ ++++++.++++++.++. +..+|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 7763 67788888887764 4567888888888888887 89999999999988755 667777766655554 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 323 ----NEALIIQMEMEKKGIPSNAIVYNTLINAYCKS----NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 323 ----~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
+++......++... +-+...|+-+...+... +...+|.+.+.+....++. +......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45666666666663 34777888887777662 3445677777776664433 55667777777764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-06 Score=86.68 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=113.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP-NAKSYTCLISAYGRPRKMSD 429 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 429 (686)
+.+.|++.+|.-.|+......+. +...|..|...-...++-..|+..+++.++. .| |....-.|.-.|...|.. .
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q-~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ-N 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH-H
Confidence 34556666666666665555332 4445665555555555555566555555554 23 333344444444444332 3
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhH-----------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCC
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALI-----------HAYSVGGWHEKAYAAFENMLR-EEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
.|...++.-....++ |..+. ..+.....+....++|-++.. .+..+|......|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 455555554433211 00000 011111122333344444332 2323555556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
+++|...|+.++..+ |.|..+||.|.-.++...+..+|+..|++++++. |+ +.+.-.|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777776666655 5566667777666666666677777777666543 32 3344446666666666666666665
Q ss_pred HHH
Q 044251 577 EMA 579 (686)
Q Consensus 577 ~m~ 579 (686)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-07 Score=88.26 Aligned_cols=253 Identities=14% Similarity=0.078 Sum_probs=153.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+....+. +.+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~-e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK-ESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH-HCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch-HHH
Confidence 34577777775555 222211122334455667777777766543 2332222 55555554444444432222 334
Q ss_pred HHHHHHHHHcCCC-CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 432 ADAFLRMKRVGIK-PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 432 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
..-++........ .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333332222211 12233333345667788999998887542 4667778888899999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 511 EKVEGTRVTFNILLDGFA----KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 511 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
.. .| .+...++.++. ..+.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+....+ +-|
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 53 33 33334444443 234689999999998654 46788999999999999999999999999987643 225
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHH
Q 044251 587 SVTYSTMIYAFVRVRDF-KRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 623 (686)
+.++..++-+....|+. +.+.+++.++.... |+..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~--p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSN--PNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT--TTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC--CCCh
Confidence 77888888888888888 66778888877643 5544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-05 Score=81.74 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=176.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCH
Q 044251 156 PDGIGRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDA 235 (686)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 235 (686)
.+...-++...-....-.+.+.|.+.+|.-.|+.+..++|... ++|..|+...+..++-..|+..+.+..+..+ .|.
T Consensus 277 ~e~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~Nl 353 (579)
T KOG1125|consen 277 SEENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHA--EAWQKLGITQAENENEQNAISALRRCLELDP-TNL 353 (579)
T ss_pred cccCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHH--HHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccH
Confidence 3334445555566677788899999999999999999988665 8999999999999998899999988877443 688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-----------HHHHcCCCHHHHHHHHHHHH-HCCCC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT-----------AMRKNGRSAKEAWEFFEKMN-RKGVK 303 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-----------~~~~~g~~~~~a~~~~~~m~-~~~~~ 303 (686)
.+.-+|...|...|.-..|+++|+...... |. |..+.. .+..... +....++|-++. ..+..
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~-l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSH-LAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHH-HHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998876532 11 000000 0001111 334445555544 34445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 044251 304 LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNIL 382 (686)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 382 (686)
+|+.+...|.-.|.-.|+++.|...|+..+... |-|..+||-|...++...+.++|+..|++.++. +|+-+ ....|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 788888888888888999999999999988874 447888999999999888999999999988875 45433 44447
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 044251 383 MDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 383 l~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.-.|...|.+++|.+.|-..+.
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH
Confidence 7788889999998888776643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00018 Score=75.14 Aligned_cols=373 Identities=13% Similarity=0.087 Sum_probs=185.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
..+.+......|..|+.+++.+..+.... -.|..+...|+..|+++.|.++|.+... ++-.|.+|.+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s---~yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~ 804 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTAS---GYYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKA 804 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcccc---ccchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhcc
Confidence 33444455556666666666666553221 3456666667777777777777665322 45566677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALII 328 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (686)
|+|+.|.++-++.... ......|.+-..-+-+.|+ +.+|.++|-.+. .|+ ..|.+|-+.|..+..+++
T Consensus 805 ~kw~da~kla~e~~~~--e~t~~~yiakaedldehgk-f~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGK-FAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred ccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcc-hhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHH
Confidence 7777776666555421 2333445555555556666 666665553321 122 234566666666666665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 329 QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
..+--.. .-..|.-.+..-|-..|++..|..-|-+.. -|...++.|...+.|++|.++-+. .|-
T Consensus 873 v~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---egg- 936 (1636)
T KOG3616|consen 873 VEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EGG- 936 (1636)
T ss_pred HHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---ccc-
Confidence 5442111 112344455556666677766666554322 244455555555666655544332 111
Q ss_pred CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 409 PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTAL 488 (686)
Q Consensus 409 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 488 (686)
.|..-- ++-.+++.-+- +.|.+++.+.- ....-+..-+..+-++-|+++-+-..+.. .|.+ ...+
T Consensus 937 ~n~~k~--v~flwaksigg-daavkllnk~g---------ll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~ 1001 (1636)
T KOG3616|consen 937 ANAEKH--VAFLWAKSIGG-DAAVKLLNKHG---------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKL 1001 (1636)
T ss_pred ccHHHH--HHHHHHHhhCc-HHHHHHHHhhh---------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHH
Confidence 111111 11122222111 33444443321 11222334455566666666655444432 2222 2223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH-------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN-------------------ILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
..-+...|+++.|.+-|-+.++.+. -+ .||. ..+.++.+.+++..|.++-+.- .
T Consensus 1002 a~~ledegk~edaskhyveaiklnt-yn-itwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~ 1074 (1636)
T KOG3616|consen 1002 AMFLEDEGKFEDASKHYVEAIKLNT-YN-ITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----C 1074 (1636)
T ss_pred hhhhhhccchhhhhHhhHHHhhccc-cc-chhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----C
Confidence 3345667777777776666655431 00 0110 1123344455555555544321 1
Q ss_pred CC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 550 PT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 550 p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|+ +..|..-..+-...|++-+|..++-+.. +|+. .++.|...+-|..|+++.+.
T Consensus 1075 ~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1075 EDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred hhhhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHh
Confidence 22 2234444444556677777777665443 5663 34455666777777776553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0001 Score=77.02 Aligned_cols=326 Identities=14% Similarity=0.147 Sum_probs=174.3
Q ss_pred HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 204 SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
...+.+|....++++++.+-+.. +.|.-...-.+.++.+...|+-++|-++- .. .-|. ...|..|.+.
T Consensus 561 e~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s--dgd~---laaiqlyika 628 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK----ES--DGDG---LAAIQLYIKA 628 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc----cc--cCcc---HHHHHHHHHc
Confidence 44566777777788887766543 33333344455556666667666664431 11 1111 2345556666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------CCCCCH
Q 044251 284 GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK----------------------GIPSNA 341 (686)
Q Consensus 284 g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------g~~~~~ 341 (686)
|.....+...+..-. +..|......+..++.+...++.|-.+|+++... .+|..+
T Consensus 629 ~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev 705 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV 705 (1636)
T ss_pred CCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH
Confidence 663322222222111 1123333333333333333333333333332110 011111
Q ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 342 IVY-NTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 342 ~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
+.. ......+...|+++.|+.-|-+.. .....+.+.....+|.+|+.+++.+++... -...|..+...
T Consensus 706 v~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadh 774 (1636)
T KOG3616|consen 706 VKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADH 774 (1636)
T ss_pred hhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHH
Confidence 111 122233344455555554443221 122244555667788888888888876633 33456677777
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
|+..|++ +.|.++|-+.- .++-.|.+|.+.|+|+.|.++-.+.. |.......|-.-..-+-..|++.+
T Consensus 775 yan~~df-e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 775 YANKGDF-EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred hccchhH-HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhh
Confidence 8888776 77887775432 35556788889999988888776653 234445566666666777888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 501 MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 501 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
|.++|-.+- .|+. .|.+|-+.|..+..+++..+-. | ..-..|.-.+..-|-..|++..|..-|-+..
T Consensus 843 aeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 843 AEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC--h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 887765442 3332 3566777777777777766532 1 1123344555666666777777766655443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0018 Score=70.06 Aligned_cols=429 Identities=13% Similarity=0.052 Sum_probs=232.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
|.-....+++..|++....+++..|......+ .-+-.+.+.|+.++|..+++.....+. .|..+...+-..|...|+
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhh
Confidence 44556778899999999999999887642222 223345689999999998888766444 488899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------C
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE----------G 320 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------g 320 (686)
.++|..+|+..... .|+..-...+..+|.+.+. +.+-.+.--+|.+. .+-+...+=+++..+... -
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~-yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKS-YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 99999999998866 6777777777777777665 44433333333332 222333333333333321 1
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKG-IPSNAIVYNTLINAYCKSNQLEEAEGLFQ-EMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
-+.-|.+.++.+.+.+ .--+..-.......+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1234566666666654 22222223334445556778888888873 333332333444445556666677777777777
Q ss_pred HHHHHHcCCCCCHH-----HHHHHHHH--------hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH---HhcCC
Q 044251 399 LLELQDMGLEPNAK-----SYTCLISA--------YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY---SVGGW 462 (686)
Q Consensus 399 ~~~m~~~~~~p~~~-----~~~~ll~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~ 462 (686)
-.++...|.. |-. .+..+-.. +...+.. +...+..++..... ....|-+-+.++ -.-|+
T Consensus 249 ~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l-~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 249 SSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSL-DECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhH-HHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCC
Confidence 7777666433 111 12222211 1111111 22222222222110 011111111111 12244
Q ss_pred HHHHHHHH------------------------------HHHHHcCCCCCHH-------HHHHHHHHHHHcCC-----HHH
Q 044251 463 HEKAYAAF------------------------------ENMLREEIKPSIE-------TYTALLDAFRRSGD-----TGM 500 (686)
Q Consensus 463 ~~~A~~~~------------------------------~~m~~~~~~p~~~-------~~~~ll~~~~~~g~-----~~~ 500 (686)
.+++.-.| ..... ..++.. -+...+......|. -+.
T Consensus 324 ~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~--~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVL--ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhc--cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 44433222 11111 111111 01122222222232 122
Q ss_pred HHHHHHHHH---hcC------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 501 MMKIWKLMM---SEK------VEGTR---------VTFNILLDGFAKQGQYL---EARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 501 a~~~~~~~~---~~~------~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
...++.+.. +.| +-|+. -+-+.|++.|.+.++.. +|+-+++...... +.|..+--.||
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 233332221 112 12221 24567888888888765 4455555554443 34666667788
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
..|+-.|-+..|.++++.+.-+++.-|..-|.. ...+...|++..+...+....+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHH
Confidence 888888999999999998877777666444332 2345566777777766665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-06 Score=82.66 Aligned_cols=253 Identities=13% Similarity=0.058 Sum_probs=156.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 315 SFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
.+.-.|.+..++.-.+ ...............+.+++...|+++.++ .++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444677777765444 222222223444555677788888877544 3333332 5566666555554444344555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLI-SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
+..-++.........+..++..+. ..+...|+. +.|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~-~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDY-EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH-HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH-HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555444443333222232333332 345555554 7777766542 25666677888999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 474 LREEIKPSIETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 474 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
.+. ..|. +...+..++.. .+.+..|..+|+++.+. ..++..++|.+.-++...|++++|.+++.+..... +
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 873 4444 34445444432 34689999999998654 57889999999999999999999999999987665 4
Q ss_pred CCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHCCCCCC
Q 044251 550 PTLMTYNMLMNAYGRGGQT-SKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd 586 (686)
-++.+...++.+....|+. +.+.+++.++... .|+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 4778888888888888887 5677888888863 455
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-05 Score=86.68 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPS---LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
+.-.|...+....+.+..+.|.+++++++..--. .--...|.++++....-|.-+...++|+++.+. .....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4455556666667777777777777777765211 111245666666655666666677777776653 13345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKL-SQEVVGALMKSFCD 318 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~ 318 (686)
.|...|.+.+++++|-++|+.|.+.- ......|...+..+.+..+ .+.|..++.++++.-.+- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777777777777777777776541 2345567777777766665 677777777776642221 22334444555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTS--ATFNILMDAYSRRMQPEIV 395 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a 395 (686)
.|+.+.+..+|+..+.. .|-....|+.+|++-.+.|+.+.+..+|++....++.|-. ..|...+..=-..|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 77777777777777665 3335667777777777777777777777777776655432 2444444444444444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-05 Score=81.84 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=186.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCL 417 (686)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (686)
+|--..-..+...+...|-...|+.+|+++. .|.-++.+|+..|+..+|..+..+..+. +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444567788889999999999998754 4667889999999999999999988873 7888999888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 418 ISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
.+..... ...++|.++++..... .-..+.......++++++.+.|+.-.+. .+--..+|..+.-+..+.++
T Consensus 464 GDv~~d~-s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDP-SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccCh-HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhh
Confidence 8877765 5568888888876442 1122222234478999999999988774 23456788888888889999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
++.+.+.|...+... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999988765 6778899999999999999999999999999887 55778899999999999999999999998
Q ss_pred HHHCCC-CCCHHHHHHHHHHHH
Q 044251 578 MATLNI-KPDSVTYSTMIYAFV 598 (686)
Q Consensus 578 m~~~g~-~pd~~~~~~li~~~~ 598 (686)
+..... .-|..+...++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 875321 125555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.8e-05 Score=75.38 Aligned_cols=206 Identities=11% Similarity=0.046 Sum_probs=144.7
Q ss_pred ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC-HHH
Q 044251 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG-RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRS-AKE 289 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~~ 289 (686)
..++.++|+.+++++....+ .+..+|+....++...| ++++++..++++...+ +-+..+|+.....+.+.+.. .++
T Consensus 49 ~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 45677789999888877433 57778887777777877 6799999999988764 34556777666566666652 367
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH----HHHHH
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS---NQL----EEAEG 362 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~ 362 (686)
++.+++++++.+.+ +..+|+....++...|+++++++.++.+++.++. +..+|+.....+.+. |.+ ++++.
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 88899899887654 7888888888888899999999999999988655 777887777666554 222 45677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 363 LFQEMKTKGLKPTSATFNILMDAYSRR----MQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 363 ~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
...+++...+. |...|+.+..++... +...+|.+.+.+....+ ..+......|+..|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 77666665443 666788777777663 33455666666655532 2245555566666653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00066 Score=73.87 Aligned_cols=249 Identities=9% Similarity=-0.088 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
..|...+....+..-. +..+|+.|.-. ...|.+.-|...|-+-... .+.+..+|..+...+....+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhh
Confidence 3566666666554322 55666665444 5556676666666555543 2335566777777777777777777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HH--hCCCCCCHHHHHHHHHHHHhcCCccHHHHHH---------
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE--FG--KIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL--------- 575 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~--------- 575 (686)
.... +.+...|-.........|+.-++..+|.. .. ..|--++..-|-........+|+.++-+...
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 6654 44555555544444566777777777765 21 1222334433333333344555544433322
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhhhhhc-----chhhh
Q 044251 576 -KEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS-GQVPDVKSYE----KLRSILDVKVATK-----NRRDK 644 (686)
Q Consensus 576 -~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~----~l~~~l~a~~~~~-----~~~~~ 644 (686)
++... +.+-+...|...+...-+.+.++.|.+...+++.. ...-|...|+ .+++++.+.+... ....|
T Consensus 956 l~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 956 LSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 22222 22334566666666666667666666665554321 1112233332 2222222211111 11222
Q ss_pred HHHHHHHHh--cccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 645 SAILGIINS--KMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 645 ~~~~~~~~~--~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
..+...+++ -.++.++.-+++.+.|.++....-++.|.
T Consensus 1035 ~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~ 1074 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDK 1074 (1238)
T ss_pred hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccch
Confidence 222222211 01234566677777777777766665553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-05 Score=70.52 Aligned_cols=249 Identities=13% Similarity=0.043 Sum_probs=156.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDM 430 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 430 (686)
+.-.|.+..++..-....... -+...-..+.++|...|.+.....- .... -.|....+..+-......++..+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHH
Confidence 334566666665544433221 2333334455666666665433221 1111 133333333333333333333334
Q ss_pred HHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 431 AADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 431 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
...+.+.+.......+......-...|+..|++++|++.+.... +......=+..+.+..+.+-|.+.++.|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555444444444445567889999999998887621 334444445566788889999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 511 EKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 511 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
.. +..+.+.|..++.+ .+.+.+|+-+|++|.+.- .|+..+.+.+..++...|++++|..++++++... .-+
T Consensus 166 id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 166 ID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred cc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 43 55677777777664 457889999999997643 7899999999999999999999999999999864 336
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 044251 587 SVTYSTMIYAFVRVRDFKR-AFFYHKQMVKS 616 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 616 (686)
+.++..++-.-...|...+ ..+.+.++...
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8888777776666666544 34555555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-05 Score=83.69 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=66.4
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL 524 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 524 (686)
+...+..|.....+.|++++|+.+++...+ +.|+. .....++..+.+.+++++|+...+..+... +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 344555555555555555555555555554 23332 344444455555555555555555555443 44444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555422 22345555555555555555555555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0017 Score=70.83 Aligned_cols=357 Identities=14% Similarity=0.169 Sum_probs=242.0
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 194 EPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS--KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
-|...+|+.....+.++...+-+.+.+++++++.-. .+..+...-|.||....+.. .....+..+++.... .|+..
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyD-a~~ia 1055 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYD-APDIA 1055 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCC-chhHH
Confidence 455667788888888888888888888888876532 12235556666666666553 446667777776553 23322
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
..+...+- +++|..+|.+.- .+......|+. .-+.++.|.+.-+... ...+|..+..+-
T Consensus 1056 ------~iai~~~L-yEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQ 1114 (1666)
T KOG0985|consen 1056 ------EIAIENQL-YEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQ 1114 (1666)
T ss_pred ------HHHhhhhH-HHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHH
Confidence 22333343 788888887653 34445555554 3456666666554432 567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.+.|.+.+|++-|-+.. |...|.-+++++.+.|.+++..+++....+..-+|... +.|+-+|++.++..+ .
T Consensus 1115 L~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~e-l 1185 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTE-L 1185 (1666)
T ss_pred HhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHH-H
Confidence 99999999988774322 66789999999999999999999998887776666544 568888998877632 2
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
.+. . .-|+......+..-|...|.++.|.-+|... ..|..+...+...|+++.|...-++.
T Consensus 1186 E~f----i---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1186 EEF----I---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHH----h---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 221 1 2367777888888899999999988877644 34788888889999999888765543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHH
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTY 590 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~ 590 (686)
.+..+|-.+-.+|...+.+.-|. |--+.+-....-..-|+..|-..|-+++.+.+++..+ |+.. -..+|
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmf 1316 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMF 1316 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHH
Confidence 46778988888888776655442 2233334456667788999999999999988888765 4432 23345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~ 612 (686)
+-|.-.|.+ -++++-++.++-
T Consensus 1317 TELaiLYsk-ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1317 TELAILYSK-YKPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHh-cCHHHHHHHHHH
Confidence 555544443 344444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-05 Score=71.76 Aligned_cols=158 Identities=11% Similarity=0.157 Sum_probs=119.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
+..|...|+++.+..-.+.+.. |. ..+...++.+++...++..++.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788887776443322211 11 01223566778888888888776 77889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--ccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAY-GRGGQ--TSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFY 609 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~ 609 (686)
++|...|++..... +.+...+..+..++ ...|+ .++|.+++++..+. .| +..++..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998877 44888888888874 67777 58999999999975 44 678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHH
Q 044251 610 HKQMVKSGQVPDVKSYEKL 628 (686)
Q Consensus 610 ~~~m~~~g~~p~~~~~~~l 628 (686)
|+++++.. .|+..-+..+
T Consensus 167 ~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 167 WQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHhhC-CCCccHHHHH
Confidence 99998864 3555544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.3e-05 Score=81.06 Aligned_cols=230 Identities=13% Similarity=0.019 Sum_probs=177.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
..+...+...|-...|..+++++. .+.-++.+|...|.. ++|..+..+..+. +||...|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~-~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQH-GKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhccc-chHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 456667778888888888888764 345567777777765 7788887777663 6788999999988888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 539 (686)
.--+++|+++.+..... .-..+.......+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 88889999998776443 11112222234789999999999988876 66778888888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 044251 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ- 618 (686)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 618 (686)
|....... +-+...||.+-.+|.+.|+-.+|...+.++.+.+ .-+..+|...+-...+.|.+++|++.+.++.....
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99988765 4478899999999999999999999999999887 44666777777788999999999999999875421
Q ss_pred CCCHHHHHHHHHH
Q 044251 619 VPDVKSYEKLRSI 631 (686)
Q Consensus 619 ~p~~~~~~~l~~~ 631 (686)
.-|..+...++..
T Consensus 620 ~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 620 YKDDEVLLIIVRT 632 (777)
T ss_pred cccchhhHHHHHH
Confidence 1244444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=72.84 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=132.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 530 (686)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55667777888888888877776543 34466677778888899999999999999998776 88999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYH 610 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 610 (686)
|+++.|..-|.+..+.. .-++..+|.|...|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999988876 3478889999999999999999999999998753 337778888888889999999999886
Q ss_pred HHH
Q 044251 611 KQM 613 (686)
Q Consensus 611 ~~m 613 (686)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00018 Score=66.66 Aligned_cols=255 Identities=13% Similarity=0.049 Sum_probs=169.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
.-++.+...|.|..++..-+...... .....-..+.++|...|++...+. .+.... .+.......+...+..-
T Consensus 13 F~iRn~fY~Gnyq~~ine~~~~~~~~---~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 13 FNIRNYFYLGNYQQCINEAEKFSSSK---TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc---chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCc
Confidence 44777888899999888777665443 233556667788888887655443 333322 24445555555544445
Q ss_pred CCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 249 GRYDDAW-KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALI 327 (686)
Q Consensus 249 g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (686)
++.+.-+ ++.+.+......-+......-...|...+. +++|++...... +......=+..+.+..+++.|.+
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~-~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGD-FDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCC-hHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 344445444323332222233345666666 999998887621 33444444566778889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 328 IQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
.++.|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+.+..++...|++++|..+++..+
T Consensus 159 ~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 159 ELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 999998763 56677777777665 46789999999999875 56788899999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC
Q 044251 404 DMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG 442 (686)
Q Consensus 404 ~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~ 442 (686)
..... ++.+...++..-...|...+...+...++....
T Consensus 235 ~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 235 DKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred hccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 77533 566666666555555555455566666666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-05 Score=75.11 Aligned_cols=168 Identities=11% Similarity=-0.014 Sum_probs=98.8
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI---ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR--VTFN 521 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 521 (686)
...+..++..+...|++++|...|+++.... +.+. ..+..+..++...|+++.|...++.+++....... .++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3344445555555666666666666555431 1111 24444555555666666666666666554321111 1233
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCCccHHHHHHH
Q 044251 522 ILLDGFAKQ--------GQYLEARDVVSEFGKIGLQPTLMTY-----------------NMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 522 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~l~~ 576 (686)
.+..++... |+.++|.+.++++.+.... +...+ ..+...|.+.|++.+|+..++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 333333332 4556666666665543211 21111 245667889999999999999
Q ss_pred HHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 577 EMATLNI-KP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 577 ~m~~~g~-~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+..+..- .| ....+..++.++...|++++|..+++.+...
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9986521 12 3578889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=57.87 Aligned_cols=32 Identities=47% Similarity=0.903 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-05 Score=75.66 Aligned_cols=101 Identities=9% Similarity=0.018 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCH---HHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLV-SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDA---HVY 238 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 238 (686)
........+..+...|++++|+..|+.+....|... ...++..++.++.+.|++++|+..++.+....+ .+. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence 555666677777777777777777777777655432 234556666777777777777777776654322 111 234
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhC
Q 044251 239 NAAISGLFWC--------GRYDDAWKAYEAMEAN 264 (686)
Q Consensus 239 ~~li~~~~~~--------g~~~~A~~~~~~m~~~ 264 (686)
..+..++.+. |++++|.+.|+.+...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4444444443 4556666666665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-05 Score=71.18 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044251 204 SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKN 283 (686)
Q Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 283 (686)
......+.-.|+-+....+...... ..+.+....+..+....+.|++.+|+..|++..... ++|...|+.+-.+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4455556666777776666666544 233566677777888888888888888888876654 66777888888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 284 GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGL 363 (686)
Q Consensus 284 g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (686)
|+ +++|..-|.+.++.... ++..++.+.-.+.-.|+++.|..++......+.. |..+-..|.......|++++|.++
T Consensus 148 Gr-~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GR-FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cC-hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 87 78888888887776332 5566777777777777788887777777766433 566666677777777777777776
Q ss_pred HHHHH
Q 044251 364 FQEMK 368 (686)
Q Consensus 364 ~~~m~ 368 (686)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00014 Score=81.60 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=156.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 187 YEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS-KEF---RDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
|++.....|+ +.-.|..-+......++.+.|++++++.... ++. .-...|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 4444444443 3367777777778888888888888876542 111 224577788887777887888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH
Q 044251 263 ANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP-SNA 341 (686)
Q Consensus 263 ~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~ 341 (686)
+. .-.-..|..|...|.+.++ +++|-++|+.|.+. ..-....|..++..+.+.++-+.|..++.+..+.=.+ -..
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek-~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEK-NDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhc-chhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 75 2223457778888888887 88889999988875 2246678888888888888888888888888776221 133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
....-.+..-.+.|+.+.+..+|+..+..-++ -...|+..++.-.+.|+.+.++.+|+++...++.|
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44455566667788888888888888776443 45678888888888888888888888888877665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-07 Score=57.88 Aligned_cols=31 Identities=32% Similarity=0.686 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 548 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
+.||..+||.||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-05 Score=68.60 Aligned_cols=91 Identities=9% Similarity=-0.130 Sum_probs=45.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++...+ +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555554443 2244555555555555555555555555555421 1234455555555555555
Q ss_pred HHHHHHHHHHHHH
Q 044251 603 FKRAFFYHKQMVK 615 (686)
Q Consensus 603 ~~~A~~~~~~m~~ 615 (686)
+++|+..++++++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00023 Score=79.19 Aligned_cols=238 Identities=15% Similarity=0.198 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 339 SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCL 417 (686)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (686)
.+...+..|+..|...+++++|.++.+...+. .|+.. .|..++..+.+.++...+..+ . +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 35667788888888888888888888866664 23332 344444456666665444433 2 2
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 418 ISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
+.......+. .....++..|...+ -+..++..+..+|-+.|+.++|..+|+++++.. +-|..+.+.+...|+.. +
T Consensus 90 l~~~~~~~~~-~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKW-AIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccch-hHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222222232 33333344444432 234466677778888888888888888887764 44667777777777777 8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
+++|++++.+++.. |...+++..+..+|.++....+. +... -.++.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~----------------f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDF----------------FLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchH----------------HHHHHHH
Confidence 88888777776643 44555667777777776654311 2222 2222222
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 578 MATL-NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 578 m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
+... |..--..++..+...|...++|++++.+++.+++..- -|......++..+.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 2211 1111233444555566666677777777777766431 23344445555553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-05 Score=67.89 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
.++.+++.. +.+......+...+...|++++|...++.+...+ +.+...|..+..+|...|++++|..++++....+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344555443 3345566677778888899999999998887765 4478888888888989999999999998887653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
+.+...+..+...+...|++++|...+++.++.. |+...+..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 125 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSELK 125 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHHHH
Confidence 3357778888888899999999999999888754 6665544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.9e-05 Score=66.18 Aligned_cols=90 Identities=8% Similarity=-0.051 Sum_probs=43.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 568 (686)
...+...|++++|...|+.++... +.+..+|..+..++...|++++|...|++..... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444444433 3344444444445555555555555555544443 22444455555555555555
Q ss_pred cHHHHHHHHHHH
Q 044251 569 SKLPQLLKEMAT 580 (686)
Q Consensus 569 ~~A~~l~~~m~~ 580 (686)
++|+..|++...
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=80.31 Aligned_cols=161 Identities=11% Similarity=0.027 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYE 259 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 259 (686)
..+++.-.....+..+. ++.++..|+.+..+.|.+++|..+++...+.. |.+......++.++.+.+++++|+..++
T Consensus 68 ~~~~~~~~~~~~~~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 68 PAAALPELLDYVRRYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred hHhhHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33444433333344433 35788888888888899999998888888743 3678888888888888999999998888
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 044251 260 AMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIP 338 (686)
Q Consensus 260 ~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 338 (686)
+.... .|+. .....+..++.+.|+ +++|.++|++++..+ +-+..++..+...+.+.|+.++|...|+...+. ..
T Consensus 145 ~~l~~--~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~ 219 (694)
T PRK15179 145 LYFSG--GSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IG 219 (694)
T ss_pred HHhhc--CCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hC
Confidence 88876 4554 455556667777887 888999999888743 335788888888888889999998888888776 22
Q ss_pred CCHHHHHHHH
Q 044251 339 SNAIVYNTLI 348 (686)
Q Consensus 339 ~~~~~~~~li 348 (686)
+....|+.++
T Consensus 220 ~~~~~~~~~~ 229 (694)
T PRK15179 220 DGARKLTRRL 229 (694)
T ss_pred cchHHHHHHH
Confidence 3445554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00041 Score=77.31 Aligned_cols=152 Identities=10% Similarity=0.113 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA 385 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (686)
...+-.+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... ++++|.+++.+....
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 3455566666666666666666666666664 33666666666666666 666666666555432
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc-CCCCChhhHhhhHHHHHhcCCHH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV-GIKPTSHSYTALIHAYSVGGWHE 464 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 464 (686)
+...+++..+..+|..+...... +. +.-..+.+.+... |...-+.++-.+-..|-..++++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~-d~-----------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSD-DF-----------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcc-cc-----------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 34445666666666666554211 11 2222333333322 22223455666667788889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044251 465 KAYAAFENMLREEIKPSIETYTALLDAFR 493 (686)
Q Consensus 465 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 493 (686)
+++.+++.+++.. +-|.....-++.+|.
T Consensus 241 ~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 9999999999863 335567777777775
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-05 Score=70.43 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=82.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 044251 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF-AKQGQ--YLEA 536 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 536 (686)
.++.++++..++..++. -+.+...|..+...|...|+++.|...|++..+.. +.+..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666654 24466677777777777777777777777777665 45666666666653 45565 4777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH
Q 044251 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 587 (686)
.+++++..+.. +-+..++..+...+.+.|++++|+..|+++.+. ..|+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 77777777665 336677777777777777777777777777764 24443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.01 Score=60.85 Aligned_cols=413 Identities=12% Similarity=0.075 Sum_probs=247.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
++.+...+..+++.+..+ -++++...++.+....|.. ++.|..-+....+.++++...++|.+-.... .+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s--~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS--PRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 455778888888888766 9999999999999876654 5999999999999999999999998876522 5677777
Q ss_pred HHHHHHHH-cCCHHHH----HHHHHHH-HhCCCCCCH-HHHHHHHHHH---------HHcCCCHHHHHHHHHHHHHCCCC
Q 044251 240 AAISGLFW-CGRYDDA----WKAYEAM-EANNVRPDH-VTCSIMITAM---------RKNGRSAKEAWEFFEKMNRKGVK 303 (686)
Q Consensus 240 ~li~~~~~-~g~~~~A----~~~~~~m-~~~g~~p~~-~~~~~ll~~~---------~~~g~~~~~a~~~~~~m~~~~~~ 303 (686)
.-+.--.+ .|+...+ .+.|+-. .+.|+.+-. ..|+-.+.-+ ..+.+ .+...++|.+++..-+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QR-I~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQR-ITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHH-HHHHHHHHHHHhcCccc
Confidence 76664433 3333332 2333333 334544432 3454444322 23334 67778888888765322
Q ss_pred CCHHHHH------HHHH-----HHH--hcCCHHHHHHHHHHHHH--CCCCCCH---------------HHHHHHHHHHHH
Q 044251 304 LSQEVVG------ALMK-----SFC--DEGLKNEALIIQMEMEK--KGIPSNA---------------IVYNTLINAYCK 353 (686)
Q Consensus 304 ~~~~~~~------~li~-----~~~--~~g~~~~A~~~~~~~~~--~g~~~~~---------------~~~~~li~~~~~ 353 (686)
-=...|+ .-|. -+. +...+-.|.++++++.. +|+.... ..|-.+|.--..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 1111221 1111 111 22345566666666542 2332211 124444432211
Q ss_pred cC------C--HHHHHHHHHHHH-HCCCCCCHHHHHH-----HHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH
Q 044251 354 SN------Q--LEEAEGLFQEMK-TKGLKPTSATFNI-----LMDAYSRRMQ-------PEIVEKLLLELQDMGLEPNAK 412 (686)
Q Consensus 354 ~g------~--~~~A~~~~~~m~-~~g~~p~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~ 412 (686)
++ . -....-++++.+ -.+..|+...... .-+.+...|+ .+++..+++...+.-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 011222223222 2233333321110 1112223333 345566666655432233333
Q ss_pred HHHHHHHHh--cCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 044251 413 SYTCLISAY--GRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALL 489 (686)
Q Consensus 413 ~~~~ll~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 489 (686)
+|..+...- ...+.-.+....+++++...-..--..+|...++.-.+..-+..|..+|.++.+.+..+ .+..+++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 443333211 00111124556666666554322234567778888888888999999999999887777 566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~ 567 (686)
.-+| .++...|.++|+.-++.- ..+...-+..++.+...++-..|..+|++....++.++ ..+|..++.-=..-|+
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 6554 688899999999887653 55666667788888899999999999999887755554 5789999998889999
Q ss_pred ccHHHHHHHHHHH
Q 044251 568 TSKLPQLLKEMAT 580 (686)
Q Consensus 568 ~~~A~~l~~~m~~ 580 (686)
+..+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00076 Score=68.13 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=91.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD-HVTCSIMITAM 280 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 280 (686)
...-....+...|++++|+..++.+.. ..+.|+..+......+.+.|+..+|.+.++.+... .|+ ...+..+..++
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~-~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA-AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 333344445566777777777776655 34466777777777777777777777777777665 455 34455555666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
.+.|+ +++|..+++...... +-|+..|..|..+|...|+..++..-.. ..|...|+++.|
T Consensus 385 l~~g~-~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A 444 (484)
T COG4783 385 LKGGK-PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQA 444 (484)
T ss_pred HhcCC-hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHH
Confidence 66666 677777777766654 3366677777777777776655544332 234456677777
Q ss_pred HHHHHHHHHC
Q 044251 361 EGLFQEMKTK 370 (686)
Q Consensus 361 ~~~~~~m~~~ 370 (686)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 7666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.001 Score=61.32 Aligned_cols=187 Identities=15% Similarity=0.088 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHH
Q 044251 355 NQLEEAEGLFQEMKTK---G-LKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSD 429 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 429 (686)
.+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++.+.- |+..-...+=.+.....+..+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666665432 2 333433 23334444445566666666666655431 221111111111111111124
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+|.++|+.+.+.++. |..+|-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 455555555444322 3344443333444444444444444444443 44455555555555555555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 044251 510 SEKVEGTRVTFNILLDGFAKQG---QYLEARDVVSEFGKI 546 (686)
Q Consensus 510 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~ 546 (686)
-.. |.+...+..+.+.+.-.| ++..|.++|.+.++.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333 333333333333332222 334444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0016 Score=65.96 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=136.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHH
Q 044251 278 TAMRKNGRSAKEAWEFFEKMN---RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK--GIPSNAIVYNTLINAYC 352 (686)
Q Consensus 278 ~~~~~~g~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~ 352 (686)
..+.+.|.+.....++|+++. ..+-.|.....+.=+ -..++.++....+.+... .-.|+...+...+.+..
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 344556665666667777766 333333322111100 012233333333333222 12345555555555544
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCCCChHHHH
Q 044251 353 KSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT-CLISAYGRPRKMSDMA 431 (686)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~~A 431 (686)
....-..+-.++.+..+. .-...-|. ....+...|++++|+..++.+... .|+...|. .....+...++. .+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~-~~A 359 (484)
T COG4783 286 EALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKA-KEA 359 (484)
T ss_pred ccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCh-HHH
Confidence 433333333333222221 11222333 333445678888888888887765 45444444 444455666555 678
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
.+.++.+....+. .....-.+..+|.+.|++.+|+.+++..... .+.|+..|..|.++|...|+..++..-..+
T Consensus 360 ~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---- 433 (484)
T COG4783 360 IERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE---- 433 (484)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH----
Confidence 8888888776433 2556666777888888888888888887765 556778888888888888887766654433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.|...|+++.|...+....+.
T Consensus 434 --------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 --------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------HHHhCCCHHHHHHHHHHHHHh
Confidence 345567888888877777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0014 Score=60.43 Aligned_cols=122 Identities=18% Similarity=0.108 Sum_probs=51.8
Q ss_pred HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH
Q 044251 209 VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK 288 (686)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 288 (686)
+....|+.+.|...++.+... ++.+..+-..-...+-..|++++|.++|+.+.+.+ +.|.+++-.-+......|+ --
T Consensus 61 AAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK-~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK-NL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC-cH
Confidence 334445555555555444431 22222222222223333445555555555554443 3344444444444444444 23
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
+|++-+...++. +..|...|.-+...|...|+++.|.-.++++.-
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 444444443332 223444444444444444444444444444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00015 Score=63.13 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
.....+...+...|+++.|...++.+...+ +.+...+..+...+.+.|++++|..+++...+.+ +.+...+..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 445555666677777777777777776655 4566777777777777777777777777776665 44666777777777
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVT 589 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~ 589 (686)
...|++++|...|++..+. .|+...
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccch
Confidence 7778888888877777753 454433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00037 Score=61.41 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=75.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCc
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGT---RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 568 (686)
..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++ ....-.|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3667777777777777654 223 22333455667777888888888888776542222 22344466777788888
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 569 SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 613 (686)
++|+..++..... ......+...+.++.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888888664322 224556667777888888888888888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00055 Score=69.86 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS 315 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (686)
.....|+..+...++++.|.++|+++.+. .|++. ..++..+...++ ..+|.+++.+.++.. +-+...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~-E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNE-EVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCc-HHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 45556667777788899999999998876 46543 346666666666 778888888888653 2356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
|.+.++++.|+.+.+++... .|.+..+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888876 344666888888888888888888888877653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.3e-05 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00047 Score=70.34 Aligned_cols=124 Identities=12% Similarity=0.162 Sum_probs=84.1
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
...|+..+...++++.|+.+|+++.+.. |+. ...++..+...++..+|.+++++.+... +.+...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555666677777777777777642 443 3346666666677777777777777554 4566666666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
.++++.|..+.+++.... +-+..+|..|..+|.+.|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777654 3356677777777777777777777776553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.77 E-value=5e-05 Score=48.03 Aligned_cols=33 Identities=48% Similarity=0.902 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044251 343 VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT 375 (686)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 375 (686)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.3e-05 Score=48.00 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRP 268 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 268 (686)
.+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.7e-05 Score=47.85 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 585 (686)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.12 Score=56.61 Aligned_cols=198 Identities=15% Similarity=0.027 Sum_probs=133.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+-.+.+.|+.++|+.+++......+. +..+...+-.+|.+.|+.++|..+|++.... .|+......+..+|++.+.
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHH
Confidence 34457899999999888887766655 6688999999999999999999999998873 2667778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNG---------RSAKEAWEFFEKMNRKG-VKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g 320 (686)
+.+-.++--+|-+. .+-+...+=.++..+...- .....|.+.++.+++.+ ..-+..-.......+...|
T Consensus 126 yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~ 204 (932)
T KOG2053|consen 126 YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG 204 (932)
T ss_pred HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc
Confidence 76544433333221 1222333334444433221 11446777788777665 3223334444455667788
Q ss_pred CHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044251 321 LKNEALIIQ-MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK 373 (686)
Q Consensus 321 ~~~~A~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 373 (686)
.+++|+.++ ....+.-...+...-+.-+..+...++|.+..++-.++...|..
T Consensus 205 k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 205 KYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 899999888 44444444445666667777788888888888888888777543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0021 Score=56.58 Aligned_cols=126 Identities=18% Similarity=0.133 Sum_probs=81.5
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT--RVTFNIL 523 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 523 (686)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......+. ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777752 223 13333455667778888888888888887652232 2244456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
...+...|++++|+..++..... ......+..++..|.+.|+.++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888888888664322 234556677788888888888888887764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00068 Score=54.11 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 599 (686)
+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+++++..... ..+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455666677778888888888776654 3345667777777777888888888888777643 2344567777777888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044251 600 VRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~ 616 (686)
.|++++|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=56.11 Aligned_cols=100 Identities=11% Similarity=-0.029 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCC--CCHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEF--RDAHVYNAA 241 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 241 (686)
+.+...+..+.+.|++++|++.|+.+....|.. ..+..+..++.++.+.|+++.|...|+.+....+. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345566778888889999999998888776543 23456677888888888888888888877653211 135567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
..++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 78888888888888888888776
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00083 Score=68.84 Aligned_cols=107 Identities=10% Similarity=-0.054 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
+...+..+...|++++|+++|+.++...|.. +..|..++.+|.+.|++++|+..++++..... .+...|..+..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHH
Confidence 3444777888999999999999999987754 47888888899999999999999998877443 67888889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
..|++++|+..|++.... .|+......++.
T Consensus 82 ~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 82 KLEEYQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 999999999999998876 566555444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=55.40 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYST 592 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~ 592 (686)
++..++..+.+.|++++|...+..+...... .....+..+..++.+.|++++|..+|+++... .|+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 4455566666777777777777777654311 11345556777777777777777777777653 222 455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 593 MIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 593 li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+..++.+.|++++|...++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777777778888888777777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0007 Score=69.39 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMT 554 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 554 (686)
+.+.+...+..+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45567778888888888888888888888887765 2222234556888888888989999998888888888899999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV 600 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 600 (686)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888777677777777777777766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.004 Score=66.74 Aligned_cols=149 Identities=9% Similarity=-0.006 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 044251 478 IKPSIETYTALLDAFRRSG-----DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ--------GQYLEARDVVSEFG 544 (686)
Q Consensus 478 ~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~ 544 (686)
.+.+...|...+++..... +...|..+|++.++.. +.....|..+..++... +++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4556666776666654322 2557777777777665 44445555444433321 12344445555443
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 545 KI-GLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 545 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
.. ....+...|..+.-.+...|++++|...++++.+. .|+...|..++.++...|+.++|.+.++++... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 12446678888877777889999999999999975 578889999999999999999999999999875 47777
Q ss_pred HHHHHHHH
Q 044251 624 SYEKLRSI 631 (686)
Q Consensus 624 ~~~~l~~~ 631 (686)
+|-.|-++
T Consensus 488 t~~~~~~~ 495 (517)
T PRK10153 488 TLYWIENL 495 (517)
T ss_pred hHHHHHhc
Confidence 77655444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00087 Score=68.72 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=103.5
Q ss_pred CCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 044251 443 IKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE--EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTF 520 (686)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 520 (686)
...+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3446777888888888888999999999888765 22222345679999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999988777666778887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00079 Score=63.87 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=48.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 571 (686)
+.+.+++++|+..|.+.++.. +-|++.|..-..+|.+.|.++.|++-.+..+... +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 344555555555555555544 3444555555555555555555555555544433 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 044251 572 PQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~ 590 (686)
++.|++.++ +.|+-.+|
T Consensus 169 ~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHhhhc--cCCCcHHH
Confidence 555555553 34544333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=66.53 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=49.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~ 604 (686)
.+...|++++|+..|++++... +-+...|..+..+|.+.|++++|+..+++++.. .| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 3444556666666666655544 234555555556666666666666666666543 33 3455555555666666666
Q ss_pred HHHHHHHHHHHC
Q 044251 605 RAFFYHKQMVKS 616 (686)
Q Consensus 605 ~A~~~~~~m~~~ 616 (686)
+|+..++++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666665553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00092 Score=57.88 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+.+....+...+...|++++|.++|+.+...+|... ..|-.++.++-..|++++|+..|.......+ .++..+..+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 456677888899999999999999999998877554 8888888899999999999999998777554 7888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.++...|+.+.|.+.|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999887664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=55.91 Aligned_cols=98 Identities=7% Similarity=-0.072 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
....-.+...+...|++++|..+|+.+.... +-+..-|-.|..+|-..|++++|+..+..+...+ +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344555666778899999999999887766 3477788889999999999999999999988764 2368888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 044251 597 FVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~ 616 (686)
+...|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988865
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.045 Score=54.46 Aligned_cols=307 Identities=14% Similarity=0.050 Sum_probs=153.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPT-SATFNILMDAYSRRMQP 392 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 392 (686)
..+.+...+.+|+..+...++.++. ++.-|..-+..+...|++++|.--.+.-... +|. .....-..+++...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 3455666777777777777777443 5666666666777777777776655444332 111 11222233333333444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC-CCChhhHhhh-HHHHHhcCCHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI-KPTSHSYTAL-IHAYSVGGWHEKAYAAF 470 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 470 (686)
.+|.+.++.-. .| . ...++..++.+..... .|.-..|..+ ..++...|+.++|..+-
T Consensus 134 i~A~~~~~~~~---------~~-~-----------~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 134 IEAEEKLKSKQ---------AY-K-----------AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHhhhhh---------hh-H-----------HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 44444333110 00 0 0011111111111111 1111222211 12333444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHHcCCHHHHH
Q 044251 471 ENMLREEIKPSIETYTALLD--AFRRSGDTGMMMKIWKLMMSEKVEGT-----------RVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 471 ~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~ 537 (686)
-..++.. + ...+..+++ ++-..++.+.+...|++.+..+..-. ...+..=.+-..+.|++..|.
T Consensus 193 ~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 4433321 0 111111111 12233444444444444443321100 001111123456789999999
Q ss_pred HHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 538 DVVSEFGKIG---LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 538 ~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m 613 (686)
+.|.+.+... ..++...|.....+..+.|+.++|+.--++.... .+. ...|..-..++...++|++|.+-++++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987543 3456777877888888999999999988888742 222 223333344666789999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHH
Q 044251 614 VKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 652 (686)
Q Consensus 614 ~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~ 652 (686)
.+... +...-..++++-.+ .....+++|-.++++..
T Consensus 348 ~q~~~--s~e~r~~l~~A~~a-LkkSkRkd~ykilGi~~ 383 (486)
T KOG0550|consen 348 MQLEK--DCEIRRTLREAQLA-LKKSKRKDWYKILGISR 383 (486)
T ss_pred Hhhcc--ccchHHHHHHHHHH-HHHhhhhhHHHHhhhhh
Confidence 87643 33333334443321 12333566766666553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=56.71 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
+|+++.|+.+|+.+....|...+...+..++.++.+.|++++|+.++++ ...+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 6788999999999998877422445566678889999999999999987 22121 344555566888889999999998
Q ss_pred HHHH
Q 044251 257 AYEA 260 (686)
Q Consensus 257 ~~~~ 260 (686)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=51.98 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555554443 2233444555555555566666666666555443 2233455555566666666
Q ss_pred ccHHHHHHHHHH
Q 044251 568 TSKLPQLLKEMA 579 (686)
Q Consensus 568 ~~~A~~l~~~m~ 579 (686)
+++|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.025 Score=54.43 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 347 LINAYCKSNQLEEAEGLFQEMKTK--GLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
+...|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444566666666666666666654 22223334555666666666666666655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=51.26 Aligned_cols=74 Identities=20% Similarity=0.388 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGI-PSNAIVYNTLINAYCKSN--------QLEEAEGLFQEMKTKGLKPTSATFNILM 383 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ll 383 (686)
|..|...+++.....+|+.++..|+ -|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555554 445555555554444321 1223344455555555555555555544
Q ss_pred HHH
Q 044251 384 DAY 386 (686)
Q Consensus 384 ~~~ 386 (686)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0041 Score=49.94 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNV-RPDHVTCSIMITAMRKNGRS-------AKEAWEFFEKMNRKGVKLSQEV 308 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~m~~~~~~~~~~~ 308 (686)
+....|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+.++..-+ .-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777899999999999999888 88999999999888766431 2234445555555555555555
Q ss_pred HHHHHHHH
Q 044251 309 VGALMKSF 316 (686)
Q Consensus 309 ~~~li~~~ 316 (686)
|+.++..+
T Consensus 107 Ynivl~~L 114 (120)
T PF08579_consen 107 YNIVLGSL 114 (120)
T ss_pred HHHHHHHH
Confidence 55554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.23 Score=52.77 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 198 VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHV------------YNAAISGLFWCGRYDDAWKAYEAMEANN 265 (686)
Q Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g 265 (686)
+.|+.|..++......-.++.|...|-+.... +.+.. -.+=|.+| -|++++|.++|-+|..+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 45588888888777766777777777655432 22211 11222222 378888888888776542
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 044251 266 VRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA 341 (686)
Q Consensus 266 ~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 341 (686)
+ .|....+.|+ +-...++++. -|-..| ...++.+...++....+++|.+.|......
T Consensus 765 L---------Aielr~klgD-wfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------ 825 (1189)
T KOG2041|consen 765 L---------AIELRKKLGD-WFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ 825 (1189)
T ss_pred h---------hHHHHHhhhh-HHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------
Confidence 1 2333334444 4333333321 111111 235666666666666666666666543211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..++.+|.+..++++.+.+-+.+.+ +....-.+..++...|.-++|.+.|
T Consensus 826 ---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 ---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 1244455555555554444433332 3333444555555555555555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0041 Score=61.42 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+|..+++...+.+..+.|..+|.+.++.+ .-+...|......-...+++.+.|..+|+..++. ...+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44445555555555555555555554332 1111222222222122222233455555544443 222344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 317 CDEGLKNEALIIQMEMEKKGIPSNA---IVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
.+.|+.+.|..+|+..... ++.+. ..|..++..-.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444433 21111 2444444444444444444444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00014 Score=44.42 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCC
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLN 582 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 582 (686)
+|+.|+.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0002 Score=43.78 Aligned_cols=29 Identities=52% Similarity=0.967 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 343 VYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00038 Score=54.62 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .. +.+ +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777778877777765431 1344455577778888888888888877 22 223 2344555567778888888888
Q ss_pred HHHHH
Q 044251 608 FYHKQ 612 (686)
Q Consensus 608 ~~~~~ 612 (686)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.032 Score=53.64 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDM--GLEPNAKSYTCLISAYGRPRKMSDMAADAFL 436 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~ 436 (686)
+...|.+.|.+..|..-++.+.+. +..........+..+|...|.. +.|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~-~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN-AQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHH
Confidence 344455555555555555555443 1112233344444555544333 44444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.018 Score=52.38 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=61.2
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL 524 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 524 (686)
...+..+...+...|++++|...|++.......+. ...+..+..++.+.|+++.|...+.+.++.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566777777888888888888888776432222 3566777777778888888888888877654 34556666666
Q ss_pred HHHHHcCCHHHHH
Q 044251 525 DGFAKQGQYLEAR 537 (686)
Q Consensus 525 ~~~~~~g~~~~A~ 537 (686)
..|...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6776666654443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.014 Score=55.71 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYL 534 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 534 (686)
.-+.+.+++++|+..|.+.++. .+-|.+.|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3467889999999999999985 34467888889999999999999999999998776 556789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCcc---HHHHHHHHHHHCCCCCCH
Q 044251 535 EARDVVSEFGKIGLQPTLMTY-NMLMNAYGRGGQTS---KLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 535 ~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~ 587 (686)
+|++.|++.++.. |+-.+| ..|-.+-.+.+... .+..-++-....|..||.
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999988764 544444 44544444444444 333333333333444653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0058 Score=55.60 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----------------RMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 418 (686)
|..+-....+..|.+-|+.-|..+|+.|++++=+ -.+-+-|++++++|...|+.||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444444444444444444444444444444322 123355667777777777777777777777
Q ss_pred HHhcCCCCh
Q 044251 419 SAYGRPRKM 427 (686)
Q Consensus 419 ~~~~~~~~~ 427 (686)
..+++.+..
T Consensus 146 ~iFG~~s~p 154 (228)
T PF06239_consen 146 NIFGRKSHP 154 (228)
T ss_pred HHhccccHH
Confidence 777665443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=56.29 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHCCCCC-CHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG---QTSKLPQLLKEMATLNIKP-DSVT 589 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-d~~~ 589 (686)
+.|...|..|...|...|+++.|...|.+..+.. .+|+..+..+..++.... ...++..+|++++.. .| |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 7789999999999999999999999999998876 568888888888876543 356899999999975 45 6778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
...|...+...|++.+|...|+.|++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888889999999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0043 Score=56.23 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQP--TLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
..++..+...|++++|...|++.......+ ...+|..+..+|...|++++|+..+++..
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333444444444444444443322111 12234444444444444444444444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=53.73 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT--RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMN 560 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 560 (686)
..+..+...+...|++++|...+++.++....+. ...+..+...+.+.|++++|...+++..... +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4456666666777777777777777775532221 3566666777777777777777777766654 224556666666
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+|...|+...+..-++.+. ..+++|.++++++++.+ |+. |..++..+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~--p~~--~~~~~~~~ 161 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLA--PNN--YIEAQNWL 161 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhC--chh--HHHHHHHH
Confidence 6666666544443333222 12577778887776533 433 44444444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0041 Score=56.55 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
+-+-|++++++|...|+-||..++..+++++.+.+.+
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 4577999999999999999999999999999776553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.008 Score=50.25 Aligned_cols=109 Identities=16% Similarity=-0.014 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCC---CHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLV-SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFR---DAHVYNAAI 242 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li 242 (686)
.......+-..|+.++|+.+|+.++..+.... ..+.+..+...+...|++++|+.+|+..... .+. +......+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHH
Confidence 44566777778888888888888887643322 2345666667777778888888888776652 212 333333445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
.++...|+.++|++.+-.... ++...|..-|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 566777888887777666543 3333454444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0087 Score=59.11 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD-EGLKNEALIIQMEMEKKGIPSNAIVYNTLIN 349 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 349 (686)
.+|..++..+.+.+. .+.|..+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 468888888888877 999999999998653 2345556555555334 56777799999999887 6668899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPT---SATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
.+.+.|+.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998875 3322 248999999889999999999999988775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.31 Score=49.41 Aligned_cols=440 Identities=11% Similarity=0.093 Sum_probs=208.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC---CCCCHHHH-HHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEP---SLVSPRAC-SVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~---~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
...|-+++++.+|.++|-++-+... .....+.+ ..++.+|.- ++.+.-...+..+.+. .+......-.....+.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~-~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ-FGKSAYLPLFKALVAY 90 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 4456678899999999998876632 22222222 334445443 3444443333333331 1123333223334456
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHH
Q 044251 247 WCGRYDDAWKAYEAMEAN--NVRP------------DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK----GVKLSQEV 308 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----~~~~~~~~ 308 (686)
+.+.+++|++.+..-.+. +-.| |-.--+..+..+...|+ +.++..+++++... ....+..+
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~-f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR-FSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhhhhhcccHHH
Confidence 788889888887776554 2121 22223455667778888 88888888887654 34478888
Q ss_pred HHHHHHHHHhcCCH---------------HHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 044251 309 VGALMKSFCDEGLK---------------NEALIIQMEMEKK------GIPSNAIVYNTLINAYCKS--NQLEEAEGLFQ 365 (686)
Q Consensus 309 ~~~li~~~~~~g~~---------------~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 365 (686)
|+.++-.+.+.=-+ +.+.-...+|... .+-|.......++....-. .+..--+++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88766555542111 1111111111110 0111111111111111110 11111122222
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044251 366 EMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEP----NAKSYTCLISAYGRPRKMSDMAADAFLRMKR 440 (686)
Q Consensus 366 ~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~ 440 (686)
.....-+.|+.. ....|...+.. +.+++..+-+.+....+.+ -..+|..++....+.+.. ..|...+.-+..
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T-~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT-EEAKQYLALLKI 326 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHh
Confidence 222222333322 12222222222 3444444333332221111 133455555555555444 445555555544
Q ss_pred cCCCCCh-----hhHhhhHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHHHcCC-HHHHHHHHH
Q 044251 441 VGIKPTS-----HSYTALIHAYSV----GGWHEKAYAAFENMLREEIKPSI-ETYTALL---DAFRRSGD-TGMMMKIWK 506 (686)
Q Consensus 441 ~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll---~~~~~~g~-~~~a~~~~~ 506 (686)
..+.... .+-..+.+..+. .-+...-+.+|+...... .|. .....++ .-+-+.|. -++|..+++
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3222110 000111122221 111233344444444432 222 1222222 22333444 677888888
Q ss_pred HHHhcCCCCCHHHHHHHHH----HHHH---cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCccHHHH
Q 044251 507 LMMSEKVEGTRVTFNILLD----GFAK---QGQYLEARDVVSEFGKIGLQP----TLMTYNMLMNA--YGRGGQTSKLPQ 573 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~ 573 (686)
.+++-. +-|...-|.+.. .|.. ...+.+-..+-+-+.+.|+.| +...-|.|..+ +...|++.++.-
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 877653 334444443322 2221 223333444444445667665 34445555544 346788888876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYE 626 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 626 (686)
.-..+.+ +.|++.+|..++-++....++++|+.++.. +.|+..+++
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~d 529 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRD 529 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHH
Confidence 6555553 688888888888888888889999888875 356666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.098 Score=46.22 Aligned_cols=136 Identities=9% Similarity=0.060 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHH
Q 044251 478 IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PTLMTYN 556 (686)
Q Consensus 478 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~ 556 (686)
..|+...-..|..++...|+..+|...|.+...--...|..++-.+..+....+++..|...++++.+.... -++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 467777777888888888888888888888886656677888888888888888888888888887654310 1233344
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+...|...|+..+|..-|+.+... -|+...-.....-+.+.|+.++|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5678888888888888888888864 67766555555666778877777666555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=53.53 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=34.0
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKP--SIETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
..|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555556666666666666665432111 1234555555555556666666555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=57.84 Aligned_cols=114 Identities=13% Similarity=-0.008 Sum_probs=72.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHh------cccCCCCCCHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVS--PRACSVLFPVLGRARMGDDLMVLFKN------LPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~li 242 (686)
...||+.|+...-+.+|+.+++.+....+ ...|..+..+|.-.+++++|++.... ...... ........|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-GEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-GEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-cccccccccc
Confidence 67899999999999999999998654332 35666777777788889999876532 111111 2334455677
Q ss_pred HHHHHcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHHcCC
Q 044251 243 SGLFWCGRYDDAWKAYEAM----EANNVR-PDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m----~~~g~~-p~~~~~~~ll~~~~~~g~ 285 (686)
+.+--.|.+++|+-...+- ++.|-. ....++..+...|...|+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 7777788898887544332 222211 123455556666665554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.24 Score=52.59 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
|.+..|..+.......-.++-|...|-+...
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 5566777777666666666666666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.054 Score=47.77 Aligned_cols=117 Identities=14% Similarity=0.019 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC---CHHH
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP---DSVT 589 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~ 589 (686)
..|+..---.|..++...|+..+|...|++...--+..|....-.+..+....+++.+|..+++.+.+.. | .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3567777778889999999999999999998765556688899999999999999999999999998753 3 2445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
...+.+++...|.+..|...|+.++.. -|+...-......|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La 204 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLA 204 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 667788999999999999999999874 477655444455553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.033 Score=59.83 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK 300 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 300 (686)
+..+|.++...+...|++++|...|++.... .|+...|..+...+...|+ .++|.+.+++..+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGD-NRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence 3344555544444555555555555555544 2444555555555555555 55555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.29 Score=45.84 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
+.+.++..+...|.+.-...++.+..++.-+.++.....|.+.--+.|+ .+.|...|++..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD-~k~a~~yf~~vek 240 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD-IKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 3444444455555555555555555544323334444444444444444 4445555544433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.005 Score=60.68 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=141.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH--HHHC--CCCC-CHHHHHHHHH
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNA----IVYNTLINAYCKSNQLEEAEGLFQE--MKTK--GLKP-TSATFNILMD 384 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~~p-~~~~~~~ll~ 384 (686)
.-+|+.|+......+|+..++.|.. |. .+|..|..+|.-.+++++|+++-.. .+.. |-+. ..-....|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888888754 33 3456666677777788888776432 1111 1110 1112223444
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 385 AYSRRMQPEIVEKLLLEL----QDMGLE-PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m----~~~~~~-p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
.+--.|.+++|.-.-.+- .+.|-. .....+-.+-..|...|+-.. . ..-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g--~---~~pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG--L---EAPEEKGAFNAEVT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC--C---CChhhcccccHHHH----------
Confidence 444555666554332221 111110 011222222233322111000 0 00000000000000
Q ss_pred cCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHH
Q 044251 460 GGWHEKAYAAFENMLR----EEIK-PSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KV-EGTRVTFNILLDGFAK 529 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~ 529 (686)
..++.|.++|.+-++ .|-. .--..|..|.+.|.-.|+++.|+..++.-++. |- ..-...+..|..++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 011233333332111 1100 01133455555555667777777666554332 21 1123456667777777
Q ss_pred cCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHH
Q 044251 530 QGQYLEARDVVSEFG----KIGLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----L-NIKPDSVTYSTMIYAFVR 599 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~pd~~~~~~li~~~~~ 599 (686)
.|+++.|.+.|+... +.|-+ ....+.-+|...|.-..++++|+.++.+-+. . ...-....+.+|..++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 788888887777643 33311 1233344567777777777888777665432 1 112245678888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 044251 600 VRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~ 616 (686)
.|..++|+.+.+..++.
T Consensus 328 lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888877766544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.044 Score=54.37 Aligned_cols=27 Identities=7% Similarity=-0.214 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMR 191 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~ 191 (686)
+.+......+-..|++++|...|..+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 344455555556666666666665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0019 Score=48.16 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=31.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 175 ANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 175 ~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
...|++++|+++|+.+....|. +..++..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666666554 335555666666666666666666666555
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.53 Score=47.17 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=71.0
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
+.+..|.-+...|+...|..+-.+. -.|+...|...+.+++..++|++..++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 3444556666777777777665554 236777778888888888888776665332 1 12355777777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 778877777777751 2 24456677777777777765444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.029 Score=54.43 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYS 591 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~ 591 (686)
..|+..+..+.+.|++++|...|+.+++..+... ...+-.++.+|...|++++|...|+.+... .|+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHH
Confidence 3455555555666888888888888876542211 346667888888888888888888888753 332 45556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 592 TMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEK 627 (686)
Q Consensus 592 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 627 (686)
.++..+...|++++|..+++++++.- |+......
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y--P~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY--PGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHH
Confidence 66777778899999999998888754 66554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.054 Score=45.33 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPS--IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE--GTRVTFNILLDGFAK 529 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 529 (686)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++........ .+..+...+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455556666666666666666554433 134444555555666666666666665544211 012222222334455
Q ss_pred cCCHHHHHHHHHHH
Q 044251 530 QGQYLEARDVVSEF 543 (686)
Q Consensus 530 ~g~~~~A~~~~~~~ 543 (686)
.|+.++|...+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666665555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=47.17 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=54.7
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
.+.|++++|+.+|+.+.... +.+..++..++.+|.+.|++++|.++++.+... .|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHHh
Confidence 46799999999999998743 368999999999999999999999999999887 688666766654
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.031 Score=55.45 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=93.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGT--RVTFNIL 523 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l 523 (686)
..|-..|++++|...|.+.... +-.. -...|.....+|.+. +++.|...+++..+. | .++ ..++..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 3455556666666555554321 1000 112333333333333 666666666665543 2 222 3356667
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC-----CCH-HHH
Q 044251 524 LDGFAKQ-GQYLEARDVVSEFGKI----GLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK-----PDS-VTY 590 (686)
Q Consensus 524 i~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~-~~~ 590 (686)
...|... |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|.++|++....-+. .+. ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 7778777 8999999999987643 2 111 345677888899999999999999998764322 122 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
...+-++...||+..|...+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444667789999999999998754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.096 Score=49.02 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
+.+.+...+..+...|++.+|+..|+.+....|.. ..+.+...++.++.+.|+++.|+..++.+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55667777888888899999999999888876543 3445556666667777777777776666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0043 Score=46.40 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVR-DFKRAFFYHKQMVK 615 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 615 (686)
++.+|..+...+...|++++|+..|++..+. .| +...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3556666677777777777777777777654 34 4566666666777777 57777777776665
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.95 Score=48.92 Aligned_cols=336 Identities=15% Similarity=0.166 Sum_probs=180.8
Q ss_pred CCCCCCHHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHH-HHHHHHHC
Q 044251 264 NNVRPDHVTCSI-----MITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK--NEALI-IQMEMEKK 335 (686)
Q Consensus 264 ~g~~p~~~~~~~-----ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~-~~~~~~~~ 335 (686)
.|++.+..-|.. +|.-+...+. +..|+++-..+...-... ..+|....+.+.+..+. +++++ +-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~-Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHL-YSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcch-hHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 366666555543 3555555565 778887777664332222 56777777777665322 22222 22222221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK----PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNA 411 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 411 (686)
. .....|..........|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+... .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 24556777777777889999998887643322211 11223344555666777777777777666542 122
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHH-HHHH----HcCCCCCHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAF-ENML----REEIKPSIETYT 486 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----~~~~~p~~~~~~ 486 (686)
..|...+. +. -.|..+|....+.. |.. .+-..|.+..+...+-.+. +... ..+..|+ ..
T Consensus 579 s~l~~~l~------~~-p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 579 SSLFMTLR------NQ-PLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHHHH------hc-hhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 22222221 11 23566666554421 111 1112222322322222211 1110 1122333 23
Q ss_pred HHHHHHHHcCCHH----------HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044251 487 ALLDAFRRSGDTG----------MMMKIWKLMMSE-KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTY 555 (686)
Q Consensus 487 ~ll~~~~~~g~~~----------~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 555 (686)
....+|.+..... .-.++.+.+... +......+.+--+.-+...|+..+|.++-+++. -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 3334444433311 112222222211 323333445555666777899999999888765 6788889
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 556 NMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
-.=+.+++..+++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+++.+.- |..--+..|-.++..-+|
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQEKVKAYLRVGDVKEA 789 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChHHHHHHHHHhccHHHH
Confidence 888999999999988877766554 24457778889999999999999987652 222133455555555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.24 Score=46.42 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHH
Q 044251 274 SIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAI-----VYNTLI 348 (686)
Q Consensus 274 ~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~li 348 (686)
+.++..+.-.+. +.-...++.+.++...+.++.....|++.-.+.|+.+.|...|+.+.+..-..+.. +.....
T Consensus 181 y~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344444444444 66666777777776666667777777777777777777777777655432222222 222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
..|.-++++..|...|.++...... |....|.-.-+..-.|+..+|.+.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566677777777666655332 4444444444444456777777777777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0043 Score=45.73 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 209 VLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
.+.+.|++++|+..|+.+.... +.+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555554444422 23445555555555555555555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0059 Score=44.99 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
...+.+.|++++|...|+++++. .| +...+..+..++...|++++|..+++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555543 23 344555555555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.007 Score=45.23 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG-QTSKLPQLLKEMAT 580 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 580 (686)
+.+|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666677777777777777766654 335666677777777777 57777777766654
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.8 Score=45.97 Aligned_cols=283 Identities=12% Similarity=-0.027 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.+.+......+.....|..|+..+..+....|.. ...|..-+..+...|++++|.--.+.-..... .....+.-.-+
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~--a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~ 125 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN--ASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQ 125 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc--hhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhh
Confidence 3445566777888889999999999999987766 46677777777777777776654443322111 12223333344
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHH-HHHHHhcCC
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK-LSQEVVGAL-MKSFCDEGL 321 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~~~l-i~~~~~~g~ 321 (686)
.+...++..+|.+.|+. ...| . ...++..++........ |.-.++-.+ ...+.-.|+
T Consensus 126 c~~a~~~~i~A~~~~~~---------~~~~-----------~-~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~ 184 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKS---------KQAY-----------K-AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD 184 (486)
T ss_pred hhhhhHHHHHHHHHhhh---------hhhh-----------H-HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc
Confidence 44444444455444441 1111 0 12233333333322211 222222222 244556777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-------------HHHHHHHHh
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF-------------NILMDAYSR 388 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------------~~ll~~~~~ 388 (686)
.++|.++--.+.+.... +....-.-..++.-.++.+.|...|++.+..+ |+...- ..-.+-..+
T Consensus 185 ~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred chhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 77777776666655311 22222222223344677788888887776653 332211 111222345
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHH
Q 044251 389 RMQPEIVEKLLLELQDM---GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (686)
.|.+..|.+.|.+.+.. ...++...|........+.|+. ++|+.-.+........ -...|..-..++...++|++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-REAISDCNEALKIDSS-YIKALLRRANCHLALEKWEE 339 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-hhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66666777766666543 2233444455555555555555 4455555554443100 01122222334444555666
Q ss_pred HHHHHHHHHH
Q 044251 466 AYAAFENMLR 475 (686)
Q Consensus 466 A~~~~~~m~~ 475 (686)
|.+-|++..+
T Consensus 340 AV~d~~~a~q 349 (486)
T KOG0550|consen 340 AVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHh
Confidence 6666655544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.084 Score=50.54 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
..+........+...|++.+|..+|..+++..+.. ..+...++..|...|+.+.|..++..++............+-|
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555566778888999999999999999887655 3677788888999999999999999888643222222223345
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGV-KLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g 320 (686)
..+.+.....+...+-.++... +-|...-..+...+...|+ .++|++.+-.+++++. .-|...-..++..+.-.|
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5555555555555554554442 2255555566666666776 6777666666655421 113334444444444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.57 Score=43.80 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGI--PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
.....+...|++++|...|+.+..... +--....-.++.++.+.|+++.|...|+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556677788888888888776522 222345556777778888888888888887765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.85 Score=45.40 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---HcCCHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE-IKPSIE--TYTALLDAFR---RSGDTGMMM 502 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~---~~g~~~~a~ 502 (686)
+.|..+-+.....-+. -...+...+...+..|+++.|+++++.-+... +.++.. .-..|+.+-+ -..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 4455555544443222 24556677777788888888888877665432 233331 1122222211 112344454
Q ss_pred HHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 503 KIWKLMMSEKVEGTRV-TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 503 ~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..-.+..+. .|+.. .--.-..++.+.|++.++-.+++.+-+....|+ ++ ++..+.+.|+ .+..-+++....
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCC--cHHHHHHHHHHH
Confidence 444444333 33322 222334567788888888888888777644443 32 2233445554 344333333221
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 044251 582 -NIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635 (686)
Q Consensus 582 -g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~ 635 (686)
.++|| .+....+..+-...|++..|..--+.+.+ ..|....|-.+.++-++.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAe 375 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAE 375 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhc
Confidence 24554 56666777777778888877776666554 457777777777776554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.038 Score=53.60 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCC--CCCCHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK--EFRDAHVYNAAISGL 245 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~ 245 (686)
..+..+.+.|++++|+..|+.++...|.. ..+.++..++.+|...|++++|+..|+.+...- .+....++-.++..+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 33334466799999999999999987765 346788888999999999999999999887521 112455666677788
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
...|+.++|.++|+.+.+. .|+..
T Consensus 228 ~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 8899999999999998876 46543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=50.09 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ---GQYLEARDVVSEFGKIGLQPTLMTYN 556 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~ 556 (686)
-|...|..|..+|...|+++.|..-|....+.. +++...+..+..++... ....++..+|++++... +-|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 345555555556666666666666555555553 34445555554444432 13445666666666554 33556666
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666666666666653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.35 Score=51.01 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQME---------MEKKGIPSNAIVYNTLINAYCKSNQ--LEEAEGLFQEMKTKGLK 373 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~---------~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 373 (686)
....+.+-+..|...|.+++|.++--- +... ..+...++..=.+|.+..+ +-+.+.-++++++.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 344455666778888888888754211 1100 0122233334445554443 23344445667777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044251 374 PTSATFNILMDAYSRRMQPEIVEKLLLE 401 (686)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (686)
|+... +...|+-.|.+.+|.++|.+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 77654 44556667777777777754
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.6 Score=47.36 Aligned_cols=349 Identities=10% Similarity=0.028 Sum_probs=191.7
Q ss_pred cCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCC
Q 044251 228 QSKEFRDAHVYN-----AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR-SAKEAWEFFEKMNRKG 301 (686)
Q Consensus 228 ~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~~a~~~~~~m~~~~ 301 (686)
..|.+.+..-|. .+|+-+...+.+..|.++-.-+...-..- ...|......+.+..+ .-+++++.+.+=+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 335555555444 46778888899999999888775321111 4455555555555422 1233444333333322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 302 VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS----NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA 377 (686)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 377 (686)
. -....|..+.+.....|+.+-|..+++.=...+... +..-+...+.-..+.|+.+-...++-.|.+. .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 345568888888889999999998876533222110 1122334455556667777777766666543 1222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCChhhHhhhHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG-IKPTSHSYTALIHA 456 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~ 456 (686)
.|...+ .+...|..+|.+..+.. |.. .+-+.|....+..+.|.-.++...... +.+-.........+
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 222211 23345566666654421 111 111222222122111111111110000 01111122233344
Q ss_pred HHhcCCHH---HH-------HHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 457 YSVGGWHE---KA-------YAAFENMLR-EEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 457 ~~~~g~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+.+..... +| +.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -|+-..|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 44443321 11 112222211 1222233445555666778899999988877664 677788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
+++..+++++-+++-+... .+.-|.-.+.+|.+.|+.+||.+++-+.- +.. -.+.+|.+.|++.+
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKE 788 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHH
Confidence 9999999988877766532 35567888999999999999999987653 111 56788999999999
Q ss_pred HHHHHHH
Q 044251 606 AFFYHKQ 612 (686)
Q Consensus 606 A~~~~~~ 612 (686)
|.+.--+
T Consensus 789 Aad~A~~ 795 (829)
T KOG2280|consen 789 AADLAAE 795 (829)
T ss_pred HHHHHHH
Confidence 9887544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.53 E-value=1 Score=45.10 Aligned_cols=106 Identities=16% Similarity=0.066 Sum_probs=76.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 495 (686)
..+.-+...|.. ..|.++-.+.. .|+...|-..+.+|+..++|++-..+... .-++..|..++.+|.+.
T Consensus 182 ~Ti~~li~~~~~-k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 182 DTIRKLIEMGQE-KQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334444445454 55666554442 36889999999999999999987765432 12447799999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
|+..+|..+...+ .+..-+..|.++|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999887772 125567889999999999876554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.017 Score=43.70 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 625 (686)
..|.+.+++++|.++++++...+ +.+...+.....++...|++++|.+.+++.++.+ |+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHH
Confidence 34556666666666666666532 2245555556666666666666666666666543 444433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.54 Score=47.62 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCC
Q 044251 194 EPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK---EFRDAHVYNAAISGLFW---CGRYDDAWKAYEAMEANNVR 267 (686)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~ 267 (686)
.+...++.+...++-.|-...+++.-+++.+.+.... ...+..+-...+-++.+ .|+.++|++++..+....-.
T Consensus 135 ~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 135 DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 3445666777777777888888888888888776631 11233333345556666 78888888888885544446
Q ss_pred CCHHHHHHHHHHHH
Q 044251 268 PDHVTCSIMITAMR 281 (686)
Q Consensus 268 p~~~~~~~ll~~~~ 281 (686)
++..+|..+.+.|.
T Consensus 215 ~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 215 PDPDTLGLLGRIYK 228 (374)
T ss_pred CChHHHHHHHHHHH
Confidence 67777776666653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.037 Score=48.68 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMV-----KSGQVPDVKSYE 626 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 626 (686)
...++..+...|++++|..+++.+.... +-|...|..++.+|...|+..+|+++|+++. +.|+.|++.+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3445555556666666666666666431 2245566666666666666666666665543 225556555433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.99 Score=47.79 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
..|.++|..|-.. ..++......++|.+|..+-+..-+ ..||+ |....+-++...++++|.+
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaqwLAE~DrFeEAqk----- 825 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQWLAENDRFEEAQK----- 825 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccc--cchHHHHhhhhhhHHHHHH-----
Confidence 4455666655421 2344555566666666665554433 23332 2333333444444444433
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
+|.++|+-.+|..+++++..
T Consensus 826 -----------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 -----------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----------------HHHHhcchHHHHHHHHHhhh
Confidence 44556777777777776643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.31 Score=42.75 Aligned_cols=92 Identities=15% Similarity=-0.103 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
...-+...|++++|..+|+-+...+ .-|..-|..|..+|-..+++++|+..|..+...+. -|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3444557899999999999887766 33777788888999999999999999988876543 366667788889999999
Q ss_pred HHHHHHHHHHHHHC
Q 044251 603 FKRAFFYHKQMVKS 616 (686)
Q Consensus 603 ~~~A~~~~~~m~~~ 616 (686)
.+.|+..|+..+..
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998873
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=2.6 Score=46.40 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHccCChhHHHHHHHhcccCCCCCCH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLF----PVLGRARMGDDLMVLFKNLPQSKEFRDA 235 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 235 (686)
..+.+......+..+.+-..|.-|+.+-..-. .++.....+. ..+.+.|++++|..-|-+.... ..|.
T Consensus 330 ~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s- 401 (933)
T KOG2114|consen 330 HELIEKDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS- 401 (933)
T ss_pred eeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-
Confidence 33555666666777777777777776654432 1223333333 3344667777777666544321 1111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS 315 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 315 (686)
.+|.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.++ .+.-.++.+..- .|.. ..-....+..
T Consensus 402 ----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd-~~kL~efI~~~~-~g~~--~fd~e~al~I 472 (933)
T KOG2114|consen 402 ----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKD-VEKLTEFISKCD-KGEW--FFDVETALEI 472 (933)
T ss_pred ----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcc-hHHHHHHHhcCC-Ccce--eeeHHHHHHH
Confidence 234455555566666666777777664 333344567777777776 554444443322 1211 1113445566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 316 FCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
|.+.+-.++|..+-..... +......++ -..+++++|++.+..|
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6666666666655443322 233333333 3356778887777655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.08 Score=54.18 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHhccc
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSP-RACSVLFPVLGRARMGDDLMVLFKNLPQ 228 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (686)
-+.+.++.+...|...|++++|+..|+.++...|..... .+|..++.+|.+.|++++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 377888899999999999999999999999998876533 5689999999999999999999998776
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.44 Score=49.16 Aligned_cols=201 Identities=9% Similarity=0.063 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARD 538 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 538 (686)
+..+..+-++.-++.++ +.|+-.+...++ +-.......++++++++.++.+-. . |.+.......-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhhhhcccc
Confidence 34445555555555555 445443322222 222345577888888887765410 0 000000000000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 539 VVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.++.+......+-..+=..|..++.+.|+.++|++.+++|.+.. ..-+..+...|+.++...+.+.++..++.+--+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi- 324 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI- 324 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-
Confidence 11111111112223333457777788999999999999998642 1113557888999999999999999998875332
Q ss_pred CCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcc
Q 044251 618 QVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 618 ~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
..|...++.--..+|.+......... ...++.|+.-. -..|.+.+.++.+.+|..|+
T Consensus 325 ~lpkSAti~YTaALLkaRav~d~fs~------e~a~rRGls~a-e~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVGDKFSP------EAASRRGLSPA-EMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhccccCc------hhhhhcCCChh-HHHHHHHHHHHHHhCCCCch
Confidence 23444433323334433222111100 01133343332 24588889999998886653
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.089 Score=46.03 Aligned_cols=99 Identities=11% Similarity=-0.016 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+-+........+...|++++|..+|+.+...++.. ++-|.-++.++-..+++++|+..|........ .|+..+-.+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~ag 112 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHH
Confidence 34566677888999999999999999999877644 47788888888889999999999976544332 4555566788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
..|...|+.+.|...|....+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHhC
Confidence 8999999999999999998873
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=42.07 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..-+....+.|++.+|...|+.+..+.|..+ -...+.-.++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----------------------------------~~~qa~l~l~ 78 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----------------------------------YSEQAQLDLA 78 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------------------------------ccHHHHHHHH
Confidence 445555555555666666666666666665554332 2344555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN-NVRPDHVTCSIMITAMRKN------GRS---AKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------g~~---~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
-++.+.+++++|+..+++.... +-.|| ..|..-|.+++.. .++ ...|..-|+++++.= |+.
T Consensus 79 yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS------ 149 (254)
T COG4105 79 YAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNS------ 149 (254)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCC------
Confidence 6777777777777777776554 22233 3444445444421 111 223333344444331 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK--PTSATFNILMDAYSRRM 390 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~ 390 (686)
.=...|...+..+... =...=..+...|.+.|.+..|..-+++|++.-.. -....+-.|..+|...|
T Consensus 150 -------~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 150 -------RYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred -------cchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 1111222222222111 0111123556788888888888888888876211 11234556677788888
Q ss_pred CHHHHHHHHHHHHHc
Q 044251 391 QPEIVEKLLLELQDM 405 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~ 405 (686)
-.++|.+.-+-+...
T Consensus 219 l~~~a~~~~~vl~~N 233 (254)
T COG4105 219 LTDEAKKTAKVLGAN 233 (254)
T ss_pred ChHHHHHHHHHHHhc
Confidence 888777766655443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.8 Score=44.01 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEK-VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTY-NMLMN 560 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~ 560 (686)
..|+..++...+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+...|.++|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888888888999999999999888 6678889999998766 47889999999874432 2344333 45666
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
-+.+.++-+.|..+|+..+.+ +..+ ..+|..+|..=...|+...+..+-+.|... .|-..+.+....-+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 677888889999999976653 3334 568999999889999999999988888763 46555555444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.9 Score=43.99 Aligned_cols=409 Identities=12% Similarity=0.086 Sum_probs=223.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC----CCC----------CCH
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS----KEF----------RDA 235 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----------~~~ 235 (686)
+++++.. ++.+.-........+..|.. +......+..+.+.+.+++|++.+..-... ..+ +|.
T Consensus 52 ilnAffl-~nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df 128 (549)
T PF07079_consen 52 ILNAFFL-NNLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF 128 (549)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence 4444443 23344444444444444422 233333344456788888888877543321 111 334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHc-------CCCHHHHHHHH-------HHH
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEANN----VRPDHVTCSIMITAMRKN-------GRSAKEAWEFF-------EKM 297 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~-------g~~~~~a~~~~-------~~m 297 (686)
..-+..+..+.+.|++.++..+++++...= ..-+..+|+.++-.+.+. +.+.+-+-+.| .+|
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 455667888999999999999988886542 336788888855444322 21122222222 222
Q ss_pred HHC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 298 NRK------GVKLSQEVVGALMKSFCDE--GLKNEALIIQMEMEKKGIPSNAI-VYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 298 ~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
... .+.|....+..++....-. .++.--.+++......-+.|+-. +...|+..+.. +.+++..+-+.+.
T Consensus 209 ~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia 286 (549)
T PF07079_consen 209 HAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIA 286 (549)
T ss_pred HHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHH
Confidence 221 1334444444444433321 12222233333333333444432 22334444433 5566665555543
Q ss_pred HCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHhcCCCCh---HHHHHHH
Q 044251 369 TKGLK----PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSY-------TCLISAYGRPRKM---SDMAADA 434 (686)
Q Consensus 369 ~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------~~ll~~~~~~~~~---~~~A~~~ 434 (686)
...+. -=..+|..++....+.++...|.+.+.-+.-. .|+...- ..+.+..+..... ...-+.+
T Consensus 287 ~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~l 364 (549)
T PF07079_consen 287 SSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNL 364 (549)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 32111 12357888889999999999999998887654 3333211 1122222311100 0223344
Q ss_pred HHHHHHcCCCCC--hhhHhhhHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHHc---CCHHHHHHH
Q 044251 435 FLRMKRVGIKPT--SHSYTALIHAYSVGGW-HEKAYAAFENMLREEIKPSIETYTAL----LDAFRRS---GDTGMMMKI 504 (686)
Q Consensus 435 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~---g~~~~a~~~ 504 (686)
++.....++... ++....-..-+.+.|. -++|+.+++..++- -+-|..+-+.+ =.+|... ..+.....+
T Consensus 365 we~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 365 WEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445544433211 1111222334555555 89999999999873 12233333322 2344332 344555666
Q ss_pred HHHHHhcCCCCC----HHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 505 WKLMMSEKVEGT----RVTFNILLDG--FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 505 ~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
-+-+.+.|++|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++..
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~- 520 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK- 520 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-
Confidence 666667787763 4456666655 4468999998776555554 578999999999999999999999999985
Q ss_pred HHCCCCCCHHHHHHH
Q 044251 579 ATLNIKPDSVTYSTM 593 (686)
Q Consensus 579 ~~~g~~pd~~~~~~l 593 (686)
++|+..+++.-
T Consensus 521 ----LP~n~~~~dsk 531 (549)
T PF07079_consen 521 ----LPPNERMRDSK 531 (549)
T ss_pred ----CCCchhhHHHH
Confidence 47787777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0093 Score=45.86 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 553 MTYNMLMNAYGRGGQTSKLPQLLKEMATL--NIK---PD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 553 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666666666666666666665532 011 12 44566677777777777777777776653
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.055 Score=47.58 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH-----HCCCCCCHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA-----TLNIKPDSVTY 590 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~~~ 590 (686)
+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45556666777888888888888877765 4477788888888888888888888877764 34777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.8 Score=43.18 Aligned_cols=293 Identities=19% Similarity=0.156 Sum_probs=136.6
Q ss_pred HHHHHHHHHH--ccCChhHHHHHHHhcccCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHH
Q 044251 202 ACSVLFPVLG--RARMGDDLMVLFKNLPQSKEFRDAHVYNAAI--SGLFWCGRYDDAWKAYEAMEANNVRPDHV--TCSI 275 (686)
Q Consensus 202 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ 275 (686)
.|..+-..+. -.|+-..|+++-.+... -...|......++ ++-.-.|+++.|.+-|+.|.. .|... ....
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 3444444333 34555566665544321 0111222222222 233446777777777777765 23321 1222
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH
Q 044251 276 MITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKG-IPSNAI--VYNTLINAYC 352 (686)
Q Consensus 276 ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~--~~~~li~~~~ 352 (686)
|.-...+.|. .+.|..+-+........ -.......+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~Ga-reaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 160 LYLEAQRLGA-REAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHhccc-HHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2222334454 55666666655544221 34566666777777777777777776654431 222221 1112222111
Q ss_pred ---HcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 044251 353 ---KSNQLEEAEGLFQEMKTKGLKPTSAT-FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMS 428 (686)
Q Consensus 353 ---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 428 (686)
-.-+...|...-.+..+ +.||.+. -.....++.+.|+..++-++++.+-+....|+.. ++..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt- 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT- 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc-
Confidence 12234444444333332 3344332 2223455666677777777777666654444432 22233444432
Q ss_pred HHHHHHHHHHHHc-CCCC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Q 044251 429 DMAADAFLRMKRV-GIKP-TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR-RSGDTGMMMKIW 505 (686)
Q Consensus 429 ~~A~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~ 505 (686)
+..-+++.... .++| +..+...+..+-...|++..|..--+.... ..|....|..+.+.-. ..|+-+++...+
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 33333322221 1122 334444555555666666665555544444 3455555555555443 236666666666
Q ss_pred HHHHhc
Q 044251 506 KLMMSE 511 (686)
Q Consensus 506 ~~~~~~ 511 (686)
.+.++.
T Consensus 387 Aqav~A 392 (531)
T COG3898 387 AQAVKA 392 (531)
T ss_pred HHHhcC
Confidence 655544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.041 Score=41.53 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=36.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..|.+.+++++|.++++.+.... +.+...|.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666777777777666655 335666666666667777777777777766653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.74 E-value=2.7 Score=42.68 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKG---IPSNAIVYNTLINAYCK---SNQLEEAEGLFQEMKTKGLKPTSATF 379 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 379 (686)
..+...++-.|....+++...++++.+...- +.....+-.....++-+ .|+.++|++++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344455555666667777777777665541 11122233334445555 67777777777775555455566677
Q ss_pred HHHHHHHHhc---------CCHHHHHHHHHHHH
Q 044251 380 NILMDAYSRR---------MQPEIVEKLLLELQ 403 (686)
Q Consensus 380 ~~ll~~~~~~---------~~~~~a~~~~~~m~ 403 (686)
..++..|-.. ...+.|...|.+.-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 7666665321 12455555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.019 Score=44.15 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQ-PT-LMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..+|+.+...|...|++++|+..|++..+. |.. |+ ..+++.+..+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677777777777777777777776532 211 12 45677788888888888888888877653
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.17 Score=43.29 Aligned_cols=70 Identities=11% Similarity=-0.026 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCC
Q 044251 161 RVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK 230 (686)
Q Consensus 161 ~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (686)
..+...+..-.....+.|+|.+|.+.|+.+..+.|.. ....+-..++.+|.+.|++++|+..+++.....
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3477788888889999999999999999999986655 355666777788888888888888887766543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.2 Score=41.38 Aligned_cols=206 Identities=18% Similarity=0.156 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+......+-....+++|-.-+..+..-..... .+-. ...-++.|.-+.+++.. ...-+..|+....+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnr---slfh------AAKayEqaamLake~~k--lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR---SLFH------AAKAYEQAAMLAKELSK--LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc---cHHH------HHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence 344445555566666666665555543221111 1111 12223444444444433 112345666677777
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 246 FWCGRYDDAWKAYEAMEAN--NVRPDH--VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
..+|..+.|-..+++.-+. ++.|+. ..|..-+..+...++ ...|.+++ ..+-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr-~~ma~el~---------------gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR-DQMAFELY---------------GKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch-HHHHHHHH---------------HHhhhHhhhhHH
Confidence 7777777666666554221 233432 122222322222222 33333333 333345556666
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCCHH
Q 044251 322 KNEALIIQMEMEKK-----GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG--LK-PTSATFNILMDAYSRRMQPE 393 (686)
Q Consensus 322 ~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~~~~ll~~~~~~~~~~ 393 (686)
+++|-..+.+-... ....--..|...|-.+.-..++..|.+.++.--+.+ .. -+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 66655444332111 011112235555556666778888888888754432 11 2445677777776 557777
Q ss_pred HHHHHH
Q 044251 394 IVEKLL 399 (686)
Q Consensus 394 ~a~~~~ 399 (686)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.28 Score=41.47 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
|..++..++.++++.|+++....+++..- |+..+... ..+. --....+.|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777777766532 22211100 0000 1112346688888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS-GQVPDVKSYEKLRSILD 633 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~l~ 633 (686)
+|+..|++..|+++++...+. ++.-+..++..|++.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887766 77667778877777653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.14 Score=52.55 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 481 SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR---VTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 481 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
+...++.+..+|...|++++|+..|++.++.+ +.+. .+|..+..+|...|++++|+..++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555566666666655555543 1122 2355555555555555555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=3 Score=45.92 Aligned_cols=148 Identities=12% Similarity=-0.001 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+......|.+.|++++|...|-+.... .. -..++.-|....+.......++.+.+.|. .+..--..|+.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le----~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLnc 440 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF---LE----PSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc---CC----hHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHH
Confidence 44556677788999999998877766543 11 12345556666677777788888887666 677777889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
|.+.++.++-.+..+... .|.- ..-....+..|.+.+- .++|.-+-.+... +......+ +-..+++++
T Consensus 441 YiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny-l~~a~~LA~k~~~-----he~vl~il---le~~~ny~e 508 (933)
T KOG2114|consen 441 YIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY-LDEAELLATKFKK-----HEWVLDIL---LEDLHNYEE 508 (933)
T ss_pred HHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh-HHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHH
Confidence 999999988777666544 2211 1123445666666654 6666555443322 33444433 345788999
Q ss_pred HHHHHHHH
Q 044251 325 ALIIQMEM 332 (686)
Q Consensus 325 A~~~~~~~ 332 (686)
|++.+..+
T Consensus 509 Al~yi~sl 516 (933)
T KOG2114|consen 509 ALRYISSL 516 (933)
T ss_pred HHHHHhcC
Confidence 99988765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.33 Score=41.05 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMS---------------EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFG-K 545 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 545 (686)
..++..++.++++.|+.+....+++..-. ....|+..++.+++.+|+..|++..|.++++.+. .
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555543321 1334556666666666666666666666666654 3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 044251 546 IGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 546 ~~~~p~~~~~~~li~~~~ 563 (686)
.+++-+..+|..|+.-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 444445556665554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.27 Score=46.79 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCC--CCCHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSL-VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKE--FRDAHVYNAAIS 243 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~ 243 (686)
....+..+...|+|..|.+-|...++..|.. .++.++--|+.++...|++++|...|..+...-+ +.-+..+-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6667777888999999999999999986654 5778888899999999999999999988766321 134577888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
...+.|+.++|..+|+++.+. -|+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 999999999999999999876 56654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.43 Score=46.35 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=44.1
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYT----ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 521 (686)
|...+...=.+|.-.|+.+.-...++++... ..++...|. .+.-++...|-++.|++.-++..+.+ +.|.-.-.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~H 213 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASH 213 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHH
Confidence 4444554445555555555555555554433 222222111 22222334555555555555555444 44444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~ 542 (686)
++...+...|+..++.+++.+
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHh
Confidence 444445555555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.17 Score=47.76 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 044251 287 AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK-NEALIIQMEMEK 334 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 334 (686)
-+-+++++++|...|+.||..+-..|+.++.+.+-. .+..++.-+|.+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 356888888888888888888888888888877653 344555555554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.88 Score=45.77 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMK 314 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 314 (686)
..+++.|..++.+.+++.+|++..+..++.+ ++|+-..-.--.++...|. ++.|+..|+++++..+. |..+-+.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~-Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPS-NKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3467777888888888888888888877764 5566666666666777776 77777777777775422 3444444444
Q ss_pred HHHhcCCHHHH-HHHHHHHHH
Q 044251 315 SFCDEGLKNEA-LIIQMEMEK 334 (686)
Q Consensus 315 ~~~~~g~~~~A-~~~~~~~~~ 334 (686)
...+.....+. .++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44443333322 455555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.10 E-value=4.5 Score=41.27 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcC-CCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVG-IKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLD 490 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 490 (686)
..|+..+....+..+. +.|..+|-+..+.+ ..+++..++++|..++. |+..-|..+|+--... ++.+..-..-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl-~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGL-EAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4455666666666555 66777777777776 45667777777766554 5566777777765553 2223333344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKVEGT--RVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
-+...++-..|..+|+..++.= ..+ ...|..+|+.-.+-|++..+..+=++|...
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5667777777777777555431 111 346777777777777777777766666553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.7 Score=45.00 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=94.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 320 (686)
++.-.-+..+.+.-.+.-.+..+. .||..+.-.++..-. .. ...++.++|++..+.|-. .+.+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAEEe-A~-Ti~Eae~l~rqAvkAgE~-----------~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAEEE-AS-TIVEAEELLRQAVKAGEA-----------SLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccccc-cc-CHHHHHHHHHHHHHHHHH-----------hhchhh
Confidence 344444556666666666666654 566644433332211 12 278899999988875411 011100
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKP-TSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
..+..-..++....+...+-..+-..|..++.+.|+.++|++.|++|.+..... .......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 011111122222333333344555667888889999999999999997653222 3335667999999999999999999
Q ss_pred HHHHHcCC-CCCHHHHHHHH
Q 044251 400 LELQDMGL-EPNAKSYTCLI 418 (686)
Q Consensus 400 ~~m~~~~~-~p~~~~~~~ll 418 (686)
.+..+... +.-..+|+..+
T Consensus 319 ~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhccccCCchHHHHHHHHH
Confidence 98754432 22345565544
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.9 Score=44.64 Aligned_cols=115 Identities=9% Similarity=-0.013 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 044251 463 HEKAYAAFENMLRE-EIKPSI-ETYTALLDAFRRS---------GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG 531 (686)
Q Consensus 463 ~~~A~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 531 (686)
.+.|+.+|.+.... ...|+. ..|..+..++... .+..+|.++-+..++.+ +.|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 46677777777622 244443 4444443333211 12334444555555544 445555555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 532 QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
+++.|...|++....+ +-...+|-.....+.-.|+.++|.+.+++..
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555443 2234444445555555555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.3 Score=47.28 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEAN-NVRPDH-----VTCSIMITAMRKN---GRSAKEAWEFFEKMNRKGVKLSQE 307 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~~~~~ll~~~~~~---g~~~~~a~~~~~~m~~~~~~~~~~ 307 (686)
....++....=.|+-+.+++++.+..+. |+.-.. ..|+.++..++.. +.+.+.|.+++..+.++- |+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 3556777777788888888888877554 222111 2355555544443 445888999999998763 4555
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 308 VVG-ALMKSFCDEGLKNEALIIQMEMEKKG---IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILM 383 (686)
Q Consensus 308 ~~~-~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 383 (686)
.|. .-.+.+...|++++|.+.|+...... .......+--+.-.+.-.++|++|.+.|..+.+..-- +...|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 444 34577788999999999999755321 1223455666777888899999999999999886332 344444443
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHHH
Q 044251 384 D-AYSRRMQP-------EIVEKLLLELQD 404 (686)
Q Consensus 384 ~-~~~~~~~~-------~~a~~~~~~m~~ 404 (686)
. ++...++. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 34456777 889999988754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=3.3 Score=40.01 Aligned_cols=141 Identities=11% Similarity=0.131 Sum_probs=95.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
......|++..|..+|+...... +-+...--.++.+|...|+.+.|..++..+-...-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566788888888888887665 33455666778888888888888888887542211112222233455566666666
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ-VPDVKSYEKLRSILDV 634 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~l~a 634 (686)
+...+-.+.-. .| |...-..+...+...|+.++|.+.+=.+++... .-|...-..+++++.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 66666666654 45 677778888888999999999888877776622 2456677777887754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.45 Score=47.79 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAF 597 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~ 597 (686)
+++.|.-+|.+.+++.+|+..-++.+..+ ++|....--=..+|...|+++.|...|+++++ +.|+ ..+-+.|+..-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 44555556666666666666666666655 44666655566666677777777777777765 3553 33334444333
Q ss_pred HHcCCH-HHHHHHHHHHHHC
Q 044251 598 VRVRDF-KRAFFYHKQMVKS 616 (686)
Q Consensus 598 ~~~g~~-~~A~~~~~~m~~~ 616 (686)
.+...+ +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 333333 3346667766643
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.89 E-value=6.4 Score=41.89 Aligned_cols=410 Identities=11% Similarity=0.044 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..|..++.---.....+.++..++.+.. ..|-----|-.....=.+.|..+.+.++|++-.. |++.++..|...+.-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~-kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLS-KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHh-hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444333333344556667776664 2322223455555555667778888888888765 3455666676666655
Q ss_pred HHcCCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---c-
Q 044251 281 RKNGRSAKEAWEFFEKMNRK-GVK-LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK---S- 354 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~- 354 (686)
.....+.+...+.|+.+... |.. .....|..+|..-..++++.....+++..++. ....|+..-.-|.+ .
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcC
Confidence 55444466777777777654 211 13455666676667777777777777777765 33333333333322 1
Q ss_pred -----CCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 044251 355 -----NQLEEAEGLFQEMKTK----GLKPTSATFNILMDAYS-RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 355 -----g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
...+++.++-...... ........+..-+.--. ..+..+++...+.+... ..-.++...
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s 268 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKS 268 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhh
Confidence 1222222222211110 00000011111110000 00111111111111000 000001111
Q ss_pred CChHHHHHHHHHHHHHc---CCC----CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 425 RKMSDMAADAFLRMKRV---GIK----PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 425 ~~~~~~A~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
... ......|+.-... .++ ++..+|..-+.--...|+.+.+.-+|+...-- +..-...|-..+.-....|+
T Consensus 269 ~~~-~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 269 EEE-EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred HhH-HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 000 1122222222221 111 13456777777777788888888888776532 11122334444444445577
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCccHHH---H
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLM-TYNMLMNAYGRGGQTSKLP---Q 573 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~ 573 (686)
.+.+..++....+..++....+--.-....-..|+++.|..+++.+...- |+.. .-..-+....+.|+.+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 77777777766655433333222222222334678888888888876543 3322 2222334455677777666 3
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 574 LLKEMATLNIKPD--SVTYSTMIY-AFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 574 l~~~m~~~g~~pd--~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.........+. ...+....+ .+.-.++.+.|..++.+|... ..++...|..++.+.
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 3333322111111 122222222 233457778888888887763 234445555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.89 E-value=2 Score=35.99 Aligned_cols=139 Identities=10% Similarity=0.131 Sum_probs=76.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+. .| ...+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHHH
Confidence 4456777777777776653 24444554444434444444444444444221 11 12334444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 538 DVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
..+-.+ ..+....+..+..+...|+-+.-.+++.++... -.+++.....+..+|.+.|+..++-+++.++-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 443322 124455666777788888888888888887653 36788888888888888888888888888888887
Q ss_pred C
Q 044251 618 Q 618 (686)
Q Consensus 618 ~ 618 (686)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.96 Score=37.63 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=64.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHH---HHHHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAH---VYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 247 (686)
.-.+...|+++.|++.|...+..-|.. +.+|+.-..++.-+|+.++|+.=+++..+.....+.. .|.--...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 556778888888888888888776544 3778888888888888888887777655433323332 33334456677
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044251 248 CGRYDDAWKAYEAMEANN 265 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g 265 (686)
.|+-+.|..=|+..-+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 788888887777776655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.4 Score=46.97 Aligned_cols=162 Identities=12% Similarity=-0.027 Sum_probs=103.3
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSI------ETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVT 519 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 519 (686)
+..++...+=.|+-+.+++.+.+..+.+---.+ -.|..++..+.. ..+.+.|.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 444556666667777777777766543211111 223333333332 456778888888888653 44444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 520 FN-ILLDGFAKQGQYLEARDVVSEFGKIG---LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 520 ~~-~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
|. .-.+.+...|++++|.+.|++..... .+.....+--+++++.-.+++++|.+.|.++.+.. .-...+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 34455667899999999998755211 12234455667888899999999999999999753 234556655555
Q ss_pred HH-HHcCCH-------HHHHHHHHHHH
Q 044251 596 AF-VRVRDF-------KRAFFYHKQMV 614 (686)
Q Consensus 596 ~~-~~~g~~-------~~A~~~~~~m~ 614 (686)
+| ...|+. ++|.+++.++-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44 567888 88888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.7 Score=38.49 Aligned_cols=190 Identities=20% Similarity=0.074 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 178 GLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS-KEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 178 g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
+.+..+...+.......+..............+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555554332212244555555566666666666655554431 122444555555666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 257 AYEAMEANNVRPDHVTCSIMIT-AMRKNGRSAKEAWEFFEKMNRKGV--KLSQEVVGALMKSFCDEGLKNEALIIQMEME 333 (686)
Q Consensus 257 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (686)
.+.........+ ......... .+...|+ ++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGD-YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 666665542122 111111222 4445555 5666666666544211 0122223333333444555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 334 KKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 334 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
..........+..+...+...++++.|...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 441111234444444455555555555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.61 Score=44.22 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044251 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRR----------------MQPEIVEKLLLELQDMGLEPNAKSYTCLIS 419 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 419 (686)
.++-....++.|.+.|+.-|..+|+.|++++-+. .+-+-+++++++|...|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444445555555555555555555544221 112335566666666666666666666666
Q ss_pred HhcCCCChHHHHHH
Q 044251 420 AYGRPRKMSDMAAD 433 (686)
Q Consensus 420 ~~~~~~~~~~~A~~ 433 (686)
++++.+-...+..+
T Consensus 167 ~FGr~~~p~~K~~R 180 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKR 180 (406)
T ss_pred HhccccccHHHHHH
Confidence 66665443333333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.7 Score=37.30 Aligned_cols=134 Identities=13% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
+.++.+...+++|+...+..++..+.+.|+ +. .+.++++.++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~-~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQ-FS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 444555556667777777777777777765 32 3444555555555544443332221 2233344444444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
=...+..++..+...|++-+|+++.+..... +......++.+....+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123555666777777777777777664322 222234456666666666665566655544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.9 Score=37.78 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=68.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHcC
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRV---TFNILLDGFAKQG 531 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g 531 (686)
-++...|+++.|++.|.+.+.. .+-....|+.-.+++.-.|+.++|+.-+++.++..-+-+.. .|-.-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567788899999999888875 44567888888889988899999998888888763233332 2333344566788
Q ss_pred CHHHHHHHHHHHHhCC
Q 044251 532 QYLEARDVVSEFGKIG 547 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~ 547 (686)
+-+.|..-|+.....|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888877776
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.36 E-value=9.9 Score=41.76 Aligned_cols=105 Identities=9% Similarity=-0.013 Sum_probs=78.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
++.+.+.+.|++|+...+......+...........+..|.-.|++++|-.+.-.|.. .+...|.-.+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 7888999999999999888877766544557788888899999999999998888876 678888888888888777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRK 282 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 282 (686)
..... .-+....-..+...|..++..+..
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 65433 223332112355678888877765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.63 Score=44.36 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKP-DSVTYSTMI 594 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-d~~~~~~li 594 (686)
.|+.-++. .+.|++..|...|...++.... -....+-.|+.++...|++++|..+|..+.+.- -.| -+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57766654 5668899999999998876522 123445568999999999999999999998641 112 257888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
....+.|+.++|..+|+++.+.= |+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y--P~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY--PGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC--CCCHH
Confidence 89999999999999999998853 65543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.1 Score=35.99 Aligned_cols=122 Identities=7% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044251 487 ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566 (686)
Q Consensus 487 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 566 (686)
.++..+...+........++.+...+ ..+...++.++..|++.+. .+....++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444555555666666666665554 3455566666666665432 333333331 112222334566666666
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 567 QTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV-RDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 567 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.++++..++.++.. +...+..+... ++++.|++++.+- .+++.|..+++.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 66666666665531 12222222223 6677777666541 245555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.5 Score=34.58 Aligned_cols=64 Identities=25% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
..+..++.+...|+-+.-.++++++.+.+ .+++...-.+..+|.+.|+..++.++++++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555666666666666666655433 55666666666666677766666666666666664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.7 Score=45.84 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=107.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC 248 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 248 (686)
.......-++++++++++.+.-.-. | .........++..+-+.|.++.|+++-+. . ..-.....+.
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~~ll-~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~l 331 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAASNLL-P-NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQL 331 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHHHTG-G-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHC
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhc-c-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhc
Confidence 3355566688899988777522211 1 11245678888888999999999887543 2 1235566788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALII 328 (686)
Q Consensus 249 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (686)
|+++.|.++.++ ..+...|..|.......|+ ++.|.+.|.+... +..|+-.|.-.|+.+.-.++
T Consensus 332 g~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 332 GNLDIALEIAKE------LDDPEKWKQLGDEALRQGN-IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp T-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred CCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 999999876544 3467799999999999998 9999988887643 55677778888998888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 329 QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
.+.....|- +|....++...|+.++..+++.+-
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888887753 455556666778888888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.76 E-value=4.5 Score=35.69 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HH
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE---VV 309 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~---~~ 309 (686)
+...|.+.+. +++.|..++|+.-|..+.+.|..--. ..-..+.......|+ ...|...|.++-.....|-.. .-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd-ta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD-TAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc-HHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4445555544 35667777888888887766532221 122223334455665 677777777776654333322 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 310 GALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
.--...+...|.++......+-+...|-+.......+|.-+-.+.|++..|.++|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1122345567777777666666655555555566666777777777777777777777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=6.1 Score=40.99 Aligned_cols=146 Identities=10% Similarity=-0.008 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHc-CCCCC-hhhHhhhHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044251 429 DMAADAFLRMKRV-GIKPT-SHSYTALIHAYSVG---------GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD 497 (686)
Q Consensus 429 ~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 497 (686)
+.|..+|.+.... ...|+ ...|..+..++... ....+|.++-+...+.+ +-|......+..+....++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 5677777777621 22333 34444444443321 23345666666666643 3466777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 044251 498 TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMTYNMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 498 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 576 (686)
++.+..+|++....+ +....+|......+.-+|+.++|.+.+++..++.+..- ..+....+..|+..+ +++|+.++-
T Consensus 354 ~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 354 AKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 888888888887776 55566666666666777888888888887665532211 122222333455444 466666654
Q ss_pred H
Q 044251 577 E 577 (686)
Q Consensus 577 ~ 577 (686)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 3
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=10 Score=39.50 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=59.4
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 044251 218 DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKM 297 (686)
Q Consensus 218 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m 297 (686)
....+|..... ....|+..|...+..+.+.+.+.+...+|.+|.... +.++..|.....-....+..++.|..+|.+.
T Consensus 89 rIv~lyr~at~-rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATN-RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34555665554 454689999999988888888999999999987762 2233444443333334444488888888888
Q ss_pred HHCCCCCCHHHHHHH
Q 044251 298 NRKGVKLSQEVVGAL 312 (686)
Q Consensus 298 ~~~~~~~~~~~~~~l 312 (686)
++.+.. ++..|...
T Consensus 167 LR~npd-sp~Lw~ey 180 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEY 180 (568)
T ss_pred hhcCCC-ChHHHHHH
Confidence 876432 34444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.60 E-value=8.3 Score=38.25 Aligned_cols=131 Identities=9% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCC-CCh
Q 044251 358 EEAEGLFQEMKTKGLKPTSATFNILMDAYSR--RM----QPEIVEKLLLELQDMGL---EPNAKSYTCLISAYGRP-RKM 427 (686)
Q Consensus 358 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~-~~~ 427 (686)
++.+.+++.|.+.|++-+..+|-+....... .. ....+..+|+.|.+... .++...+..++..-... ...
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l 158 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHH
Confidence 3445566666666666565555443322222 11 23456666666665432 23444555554431111 112
Q ss_pred HHHHHHHHHHHHHcCCCCCh--hhHhhhHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTS--HSYTALIHAYSVGGW--HEKAYAAFENMLREEIKPSIETYTAL 488 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 488 (686)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24455666666665544322 222222222111111 23566666666666666655554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.59 E-value=12 Score=39.97 Aligned_cols=396 Identities=10% Similarity=0.010 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 044251 181 GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF-WCGRYDDAWKAYE 259 (686)
Q Consensus 181 ~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 259 (686)
+.+...+..++...|... -.|...+..=.+.|..+.+.++|++..+ +.+.++..|......+. ..|+.+...+.|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~--gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY--GYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCccHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 444556666666665443 4455556666678888899999998877 56567777776655443 4677777788888
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---Hhc------CCHHHHHHH
Q 044251 260 AMEAN-NVR-PDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF---CDE------GLKNEALII 328 (686)
Q Consensus 260 ~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~------g~~~~A~~~ 328 (686)
..... |.. -...-|...|.--..+++ +.....+|++.++.- ..-++.....| .+. ...+++.++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks-~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKS-WKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhcccc-HHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 87654 322 244567777776666665 888888888888642 11222222111 111 122333322
Q ss_pred HHHHHHC---C-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 329 QMEMEKK---G-IPSNAIVYNTLINAYCK-SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 329 ~~~~~~~---g-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
-...... + .......+..-+.--.. .+.++++.....+.. ...-.++-...........++.-.
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2222210 0 00000111110000000 001111111100000 000011111111222222222222
Q ss_pred HcC---C----CCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 404 DMG---L----EPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 404 ~~~---~----~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
+.. + .++..+|..-+..-...|+. +.+.-.|+...--- ..-...|-..+.-....|+.+-|..++....+-
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~-~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDF-SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccH-HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 110 1 12344455555555555454 44555555443210 001122333333334447777777766665554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR---DVVSEFGKIGLQPTLM 553 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~ 553 (686)
-++-...+--.-...+...|++..|..+++.+.+.- +.-..+-..-+....+.|+.+.+. .++..... | .-+..
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcc
Confidence 232222222222223455678888888888888765 333444444455666778888777 33333322 1 22333
Q ss_pred HHHHHHHHH-----HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 044251 554 TYNMLMNAY-----GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVR 601 (686)
Q Consensus 554 ~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 601 (686)
+.+.+.--+ .-.++.+.|..++.+|.+. +.++...|..++.-+...+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333222 2356778888888888874 4556777777777665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.4 Score=35.05 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.++..+...+........++.+...+ ..+....+.++..|++.. ....++.+.. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 34455555555666666666655554 244455566666665543 2334444331 01222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 044251 320 GLKNEALIIQMEM 332 (686)
Q Consensus 320 g~~~~A~~~~~~~ 332 (686)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.6 Score=44.40 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=81.4
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
...+.++..+.+.|..+.|+.+..+-.. -.....+.|+++.|.++.++ ..+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 3366667777777777777766543222 12234567777777766432 23566788888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 607 (686)
.+.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 888888888888876432 55677777777877777777776666541 444445555667777777
Q ss_pred HHHHH
Q 044251 608 FYHKQ 612 (686)
Q Consensus 608 ~~~~~ 612 (686)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.29 E-value=9.5 Score=37.93 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=29.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCC---C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLREEI---K--PSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
.+..++...+.++++++.|+...+--. . .....+..+...|.+..|++++.-+..+..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 344555555566666666665543210 1 112445555555666666666555554443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.9 Score=38.89 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDS----VTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVK 635 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~ 635 (686)
..+...|++++|+.-++..... .-|. .+--.|.+.....|.+|+|+.++......+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~------------------ 156 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES------------------ 156 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc------------------
Confidence 4455566666666666655531 1111 111223445555566666666555443222
Q ss_pred hhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCC
Q 044251 636 VATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHP 677 (686)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p 677 (686)
|.++...+.+-..+.+|++++|+..|.++..+.+
T Consensus 157 --------w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 157 --------WAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred --------HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3333333334444455666666666666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.25 E-value=9.3 Score=37.72 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=80.0
Q ss_pred hHhhhHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWH---EKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 449 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
++..++.+|...+.. ++|..+++.+... .+-.+..+..-+..+.+.++.+.+.+++..|+..- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 445556666665554 3455555555443 22234455555666666777777777777777652 212233333333
Q ss_pred HH---HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH----HHHHHhcCC------ccHHHHHHHHHHHC-CCCCCHHHH
Q 044251 526 GF---AKQGQYLEARDVVSEFGKIGLQPTLM-TYNML----MNAYGRGGQ------TSKLPQLLKEMATL-NIKPDSVTY 590 (686)
Q Consensus 526 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l----i~~~~~~g~------~~~A~~l~~~m~~~-g~~pd~~~~ 590 (686)
.+ .. .....|...+..+....+.|... ....+ +....+.++ ++.+.+++...... +.+.+..+-
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 22 22345556665555333344332 11111 111112222 33344444433221 222333332
Q ss_pred H---HH----HHHHHHcCCHHHHHHHHHHHHH
Q 044251 591 S---TM----IYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 591 ~---~l----i~~~~~~g~~~~A~~~~~~m~~ 615 (686)
. +| +..+.+.++|++|.++++..+.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2 23 2345678899999999986653
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=7.4 Score=36.34 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=105.1
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLD-AFRRSGDTGMMMKIWKLMMSEKV--EGTRVTFNI 522 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ 522 (686)
....+..+...+...+.+..+...+.........+ ......... .+...|+++.+...+........ ......+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 34445555555566666677777777666542222 111222222 56777777777777777755221 123334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRV 600 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~ 600 (686)
....+...++.+.|...+.+..... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLEL 249 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHc
Confidence 4444667788888888888877654 33 4677777888888888888888888888753 343 44555555555566
Q ss_pred CCHHHHHHHHHHHHHCC
Q 044251 601 RDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 601 g~~~~A~~~~~~m~~~g 617 (686)
|..+++...+.+..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 250 GRYEEALEALEKALELD 266 (291)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77888888888877654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.16 E-value=16 Score=40.15 Aligned_cols=245 Identities=18% Similarity=0.134 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINA-----YCKSNQLEEAEGLFQEMKT-------KGLKPTSATFNILMDAYSRR 389 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 389 (686)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.+.. .| .....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 455666666666665 22322222222 2344577777777777655 34 222445566666553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH----hc
Q 044251 390 M-----QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS----VG 460 (686)
Q Consensus 390 ~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 460 (686)
. +.+.|..++...-+.| .|+...+...+......++....|.++|......|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 5666888887777766 3455555444444443112235788888888777632 22222222222 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HH----cCCH
Q 044251 461 GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF---AK----QGQY 533 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~ 533 (686)
.+.+.|..++++.-+.| .|...--...+..+.. +..+.+.-.+..+.+.+.+.....-..++... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 46678888888887776 2222222222223333 66666666666666655322111111111111 11 1245
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG----GQTSKLPQLLKEMATL 581 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~ 581 (686)
..+...+.+....| +......|...|... .+++.|...+......
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 56666666655544 455555555555433 2355555555555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.98 E-value=6.3 Score=35.06 Aligned_cols=134 Identities=14% Similarity=0.247 Sum_probs=78.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRP-RKMSDMAADAFLRMK 439 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~~A~~~~~~~~ 439 (686)
.++++.+.+.++.|+...+..+++.+.+.|++.... ++...++-+|.......+-.+... ......+.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 355566667778888888888888888888765443 344445555555554444333322 112233444444443
Q ss_pred HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 440 RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
. .+..++..+...|++-+|+.+.+..... +......++.+....+|...-..+++-..+
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3566777888889999888888765322 111224455666666666555555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=3.8 Score=40.13 Aligned_cols=157 Identities=11% Similarity=0.001 Sum_probs=105.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcC
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK-G--VKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-~--~~~~~~~~~~li~~~~~~g 320 (686)
.+-..|++.+|-..++++.+. .+.|..++...=.++..+|+ ...-...+++++.. + .+-...+...+.-.+...|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344567888888888888765 25677888888888988998 77788888888754 2 2222333344455566889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK---GLKPTSATFNILMDAYSRRMQPEIVEK 397 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~ 397 (686)
-+++|.+.-++..+.+ +.|...-.++.+.+-..|++.++.++..+-... +--.-...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999988888774 347777888888888899999998877653321 000001112223334456688888888
Q ss_pred HHHHHH
Q 044251 398 LLLELQ 403 (686)
Q Consensus 398 ~~~~m~ 403 (686)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 887643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.92 E-value=22 Score=41.20 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHhccc
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQ--EPSLVSPRACSVLFPVLGRA-RMGDDLMVLFKNLPQ 228 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 228 (686)
+.....-++.++.+++|.+|....+.-.-. .-...++..|.--+.++.+. ++.+-...++..+..
T Consensus 677 R~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~ 744 (1265)
T KOG1920|consen 677 RILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKE 744 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhccc
Confidence 344556688888888888876655554322 11122356666656666554 445555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.70 E-value=6.3 Score=34.60 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 518 VTFNILLDGF---AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMI 594 (686)
Q Consensus 518 ~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 594 (686)
.+.+.|+... .+.++.+++..++.-+.-..+. ....-..-.+.+.+.|++.+|..+|+++.+. .|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 3444444433 3567888888888887765321 2333333456677888999999999988754 34333333444
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 595 YAF-VRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 595 ~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
..| ...|+.+ =..+-.++++.+ +|+.+-..+..++
T Consensus 85 A~CL~~~~D~~-Wr~~A~evle~~--~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 85 ALCLYALGDPS-WRRYADEVLESG--ADPDARALVRALL 120 (160)
T ss_pred HHHHHHcCChH-HHHHHHHHHhcC--CChHHHHHHHHHH
Confidence 433 3444432 222334455555 4444444333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.26 Score=32.69 Aligned_cols=32 Identities=9% Similarity=-0.042 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSL 197 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~ 197 (686)
.+..+...+.+.|++++|.++|+++++..|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44556667777777777777777777766644
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.42 E-value=9.7 Score=36.16 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHcCCH
Q 044251 462 WHEKAYAAFENMLREEIKP---SIETYTALLDAFRRSGDTGMMMKIWKLMMSE-----KVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~ 533 (686)
.+++|+.-|++.++....- ....+..++....+.|++++.+..|.+++.- .-.-+....|.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4455555555544421111 1123333444555556665555555554421 0122344556666655555555
Q ss_pred HHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCccHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHH
Q 044251 534 LEARDVVSEFGKI-GLQPTL----MTYNMLMNAYGRGGQTSKLPQLLKEMATLNI----KPD-------SVTYSTMIYAF 597 (686)
Q Consensus 534 ~~A~~~~~~~~~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd-------~~~~~~li~~~ 597 (686)
+--..+++.-++. .-..|. .|-.-|...|...|.+.+..++++++...-- .-| ..+|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5554444442211 001122 2334577788888888888888888764311 111 34566666677
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhC
Q 044251 598 VRVRDFKRAFFYHKQMVKS-GQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRH 676 (686)
Q Consensus 598 ~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~ 676 (686)
....+-..-..++++.+.- .-.|.+.+...+.++ -++|.+..|+..+|.--|.++.+-+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC--------------------GGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC--------------------GGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc--------------------CCccccccchHHHHHhHHHHHHhcc
Confidence 7777767777777766533 223444432222111 1455667777888887777776654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.41 E-value=22 Score=39.77 Aligned_cols=165 Identities=10% Similarity=0.061 Sum_probs=89.5
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhcCC--CCCC--HHHHHHHHHHHHccCChhHHHHHHHhcccCC----CCCCHHH
Q 044251 167 CVQLLELMA-NDGLLGCCLYFYEWMRLQEP--SLVS--PRACSVLFPVLGRARMGDDLMVLFKNLPQSK----EFRDAHV 237 (686)
Q Consensus 167 ~~~l~~~l~-~~g~~~~Al~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 237 (686)
...++..|. ...+++.|..++++....-. ...+ -..-..++.++.+.+... |.+.+++..+.- ...-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 345566665 77889999999998765522 1111 122334566666666655 777777644321 1112233
Q ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCC---------C
Q 044251 238 YNAA-ISGLFWCGRYDDAWKAYEAMEANN---VRPDHVTCSIMITAMRKNGRS-AKEAWEFFEKMNRKGV---------K 303 (686)
Q Consensus 238 ~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~-~~~a~~~~~~m~~~~~---------~ 303 (686)
+.-+ +..+...+++..|++.++.+...- ..|-...+-.++.++...... .+++.+.++++..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 333334478998998888875431 133344444455444433221 5667777766643211 2
Q ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 044251 304 LSQEVVGALMKSFC--DEGLKNEALIIQMEM 332 (686)
Q Consensus 304 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 332 (686)
|...++..+++.++ ..|++..+...++.+
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24456666666554 466666666554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.6 Score=42.26 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
++..++..+..+|+++.+...++++.... +-+...|..||.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 45555566666666666666666666554 3356666666666666666666666666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.44 Score=31.57 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
+..+...|...|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.7 Score=37.15 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=86.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPT-----LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVR 599 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~ 599 (686)
-+.+.|++++|..-|.+++..- ++. ...|..-..++.+.+.++.|+.-..+..+. .|+ ...+..-..+|-+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 3456678888888777776653 222 344555566777888888888887777764 443 3334444567888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHH
Q 044251 600 VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFW 670 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~ 670 (686)
...+++|++=|+++++.. |...-...-+.-|.-.....+-+....+++-++...-++.++..-..+-|.
T Consensus 181 ~ek~eealeDyKki~E~d--Ps~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlStdnFq 249 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD--PSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLSTDNFQ 249 (271)
T ss_pred hhhHHHHHHHHHHHHHhC--cchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccee
Confidence 889999999999988754 655544444444433444444455566666665544445545444445454
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.76 E-value=6.8 Score=34.41 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=40.5
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 285 (686)
.+.++.+++..+++.+.--.+ .....-..-...++..|+|.+|+.+|+++.+. .|.......|+..|....+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence 355666666666665544222 22333333344566777777777777777665 3554455555555555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.63 E-value=5.3 Score=34.35 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKV--EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
.....+.|+++.|.+.|+.+...-. +-...+.-.|+.+|.+.+++++|...+++++++.+..--.-|-..+.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344566777777777777665521 22344555667777777777777777777776654322334444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.4 Score=38.27 Aligned_cols=94 Identities=16% Similarity=0.020 Sum_probs=43.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPS-LVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
.++......|++++|+..++|.+....+ ...+-+-..+.++....|.+|+|+.+++.....+. .......-.+++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4445555555556665555555543211 11112222334445555555555555555443111 12223333445555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 044251 248 CGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~ 264 (686)
.|+-++|+.-|....+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.53 E-value=32 Score=39.97 Aligned_cols=136 Identities=13% Similarity=0.203 Sum_probs=81.2
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTA----LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
|.-.++.--+.|.+.+|+.++ .|+...+.. ..+.+...+.++.|.-.|+..=+ ..-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 333344444555566665554 345544443 34444555666666655554321 123456
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLM--TYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 603 (686)
+|..+|++.+|..+..++.. ..+.. +-..|+.-+...+++-+|-+++.+... .| .-.+..|++...|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHH
Confidence 67778888888888776542 22322 225677888899999999999988874 22 2334456677778
Q ss_pred HHHHHHHHHH
Q 044251 604 KRAFFYHKQM 613 (686)
Q Consensus 604 ~~A~~~~~~m 613 (686)
++|+.+....
T Consensus 1043 ~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1043 EEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc
Confidence 8888776544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.36 E-value=8.4 Score=38.28 Aligned_cols=230 Identities=13% Similarity=0.027 Sum_probs=135.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHccCChhHHHHHH----HhcccCCCCC---CHHHHHHHH
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLV-SPRACSVLFPVLGRARMGDDLMVLF----KNLPQSKEFR---DAHVYNAAI 242 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~---~~~~~~~li 242 (686)
...|..+.++.+|+..+...+..-.+.. .-.++..+..+..+.|.+++++..- +...+ ... --..|..+.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--LEDSDFLLEAYLNLA 90 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5566778888888887777765522111 1245556667777888887754422 11111 111 123455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN-NVRP-DH--VTCSIMITAMRKNGRSAKEAWEFFEKMNRKG-----VKLSQEVVGALM 313 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li 313 (686)
+++-+--++.+++.+-..-... |..| .. ....++-.+..-.+. ++.+++.|+...+.. ......++..|.
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 6666666666666665554432 2222 11 122334455555555 889999999887652 223345788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q 044251 314 KSFCDEGLKNEALIIQMEMEK----KGIPSNAIVY-----NTLINAYCKSNQLEEAEGLFQEMKT----KGLKPT-SATF 379 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 379 (686)
..|.+..++++|.-+..+..+ .|+..-..-| ..|.-++...|.+-.|.+.-++..+ .|-.+. ....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999998866655433 2332111222 3344567778888888777776543 342221 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
..+.+.|...|+.+.|..-|++..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHH
Confidence 567788888999988887777653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.36 E-value=9.9 Score=33.68 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=69.2
Q ss_pred HccCChhHHHHHHHhcccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHHcCCC
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDA-HVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV-TCSIMIT--AMRKNGRS 286 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~g~~ 286 (686)
++.+..++|+..|..+...|...-+ -..--+.......|+...|...|++.-...-.|-.. -...|-. .+..+|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs- 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS- 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc-
Confidence 4556666677777666665543211 122223445566777777777777765543333322 1111111 2334454
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 287 AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
++......+-+...+-+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666666655554444555566666677777777777777776653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.53 Score=29.57 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
+|..|...|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888855
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.76 E-value=13 Score=34.18 Aligned_cols=186 Identities=16% Similarity=0.100 Sum_probs=88.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
.-|.+.-|.--|...+...|..+ .+|+.++.-+...|+++.|.+.|+.+.+-.+.-+-...|.-|. +.--|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~--~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcH--HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 33444444445555555555443 7777777777777888878777777766443223333333333 23356777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEF-FEKMNRKGVKLSQEVVGALM-KSFCDEGLKNEALIIQMEME 333 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~-~~~m~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 333 (686)
+-|-..-... +.|+ |.++---+....-++.+|..- .++..+. +..-|...| ..|...-..+.+.+-.....
T Consensus 154 ~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 154 DDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 6555554331 1121 222221122222224444433 2333221 322232222 22211111111111111100
Q ss_pred HCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 334 KKG---IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 334 ~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 371 (686)
..+ ...=..+|--|..-+...|+.++|..+|+-....+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 000 00024567777888888888888888888777653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=16 Score=34.74 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 316 FCDEGLKNEALIIQMEMEKKG--IPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
-.+.|++++|.+.|+.+..+- -+-...+.-.++.++.+.++++.|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 345677777777777776552 1223445555666777777777777777776654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.19 E-value=3.6 Score=39.94 Aligned_cols=77 Identities=12% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFG-----KIGLQPTLMTYNML 558 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 558 (686)
++..++..+...|+.+.+...++.++... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|-..+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555666666666666666666655 5566666666777777777666666666654 35666666665555
Q ss_pred HHH
Q 044251 559 MNA 561 (686)
Q Consensus 559 i~~ 561 (686)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=22 Score=34.99 Aligned_cols=136 Identities=10% Similarity=-0.043 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 481 SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 481 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
+..+-...+.++.+.++. .+...+-.++.. ++..+-...+.++.+.+ ....+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 444555555666665553 344444444432 23334444444444432 13345555555442 44666666677
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.++.+.|. ..|+..+-++.+.+ + .....+.++...|+. +|...+.++.+.. ||..+..+.++.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 77777776 45555555555432 2 234566677777774 5777777776533 5666666555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.60 E-value=5.2 Score=36.29 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDH--VTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
...+..+...|.+.|+.++|++.|.++.+....+.. ..+-.+|......++ +..+...+.++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-WSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 346777888888888888888888888776443332 345566666666666 7777666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.52 E-value=37 Score=37.34 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=72.7
Q ss_pred ccCChhHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 212 RARMGDDLMVLFKNLPQ-------SKEFRDAHVYNAAISGLFWCG-----RYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
...+.+.|+..|..... .+ .....+.+..+|.+.. +...|+.+|...-+.| .|+....-..+.-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45666777777766544 22 2334555566665532 4566777777766655 3443322222211
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC--DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQL 357 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 357 (686)
....+++...|.++|....+.|.. ....+.+++.... ...+...|..++....+.|. +...--...+..+.. +++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccc
Confidence 111113356677777777766632 1111111111111 22355666666666666652 222222222233333 555
Q ss_pred HHHHHHHHHHHHCC
Q 044251 358 EEAEGLFQEMKTKG 371 (686)
Q Consensus 358 ~~A~~~~~~m~~~g 371 (686)
+.+.-.+..+.+.|
T Consensus 414 ~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 414 DTALALYLYLAELG 427 (552)
T ss_pred cHHHHHHHHHHHhh
Confidence 55555555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.30 E-value=20 Score=33.85 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 554 TYNMLMNAYGRGGQTSKLPQLLKEMATLNI--KP-DSVTYSTMIYAFVRVRDFKRAFFYHK 611 (686)
Q Consensus 554 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p-d~~~~~~li~~~~~~g~~~~A~~~~~ 611 (686)
.|-..|-.|....++..|.+.++.-.+.+- .+ +..+...|+.+| ..|+.+++..++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 355556666666677777777776443221 22 466777777665 4577776665543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.01 E-value=16 Score=40.65 Aligned_cols=368 Identities=11% Similarity=0.108 Sum_probs=147.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR------SAKEAWEFFEKMNRKGVKLSQE--VVGA 311 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~~a~~~~~~m~~~~~~~~~~--~~~~ 311 (686)
++|-.+.++|++++|.++..+.... .......+...+..+....+ .-+....-|++..+.....|+. ..-.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5777889999999999998555433 23334556677777765422 1234555556555544322332 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 312 LMKSFCDEGLKNEALIIQMEMEKKGIPSNAI--VYNTLINAYCKS---------NQLEEAEGLFQEMKTKGLKPTSATFN 380 (686)
Q Consensus 312 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~ 380 (686)
+|. .|...+-.. ..+-.+.. .|-.|...-... -.+++..+.+.+.-+....++.. .-
T Consensus 195 ilg-~cD~~~~~~----------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~-p~ 262 (613)
T PF04097_consen 195 ILG-RCDLSRRHL----------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSN-PL 262 (613)
T ss_dssp HHH-T--CCC-S-----------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------
T ss_pred HHh-cCCccccch----------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchh-HH
Confidence 221 111100000 00011111 222221111111 01222222222222222333111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC-CCChhhHhhhHHHHHh
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI-KPTSHSYTALIHAYSV 459 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 459 (686)
....++.-.|+++.|.+.+.. ..+...+.+++...+..|+-..-. +... ..+..... .+...-+..||..|++
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~-~~~~---~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVS-DSSS---APLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCC-Cccc---cceeeecCCCCCCcCHHHHHHHHHH
Confidence 234455567899999988876 223355777777777766543211 1111 11211110 1112557777877776
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHH-----------HHHHH---HHhcCCCCCHH---
Q 044251 460 ---GGWHEKAYAAFENMLREEIKPSIETYT-ALLDAFRRSGDTGMMM-----------KIWKL---MMSEKVEGTRV--- 518 (686)
Q Consensus 460 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~-----------~~~~~---~~~~~~~~~~~--- 518 (686)
..+..+|+++|--+....-+.....+. .+-......++++..+ .++++ ++... .+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~-~~~~~~~~ 415 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFD-DDEDFLRE 415 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-S-SSSHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCC-CcHHHHHH
Confidence 356788888877665432211122222 2222223333332211 11111 11111 11222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC-----------ccHHHHHHHHHHHCC----
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY-GRGGQ-----------TSKLPQLLKEMATLN---- 582 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~-----------~~~A~~l~~~m~~~g---- 582 (686)
+......-+...|++++|..+|.-+.+.. .-....|.++.-. ..... ...|..+.+.....+
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~ 493 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISS 493 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHh
Confidence 22334445667888888888887654211 0122233333222 22222 123344443333211
Q ss_pred -CCC-CHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 044251 583 -IKP-DSVTYSTMIY-----AFVRVRDFKRAFFYHKQMVKSGQVPDV-KSYEKLRSIL 632 (686)
Q Consensus 583 -~~p-d~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l 632 (686)
+.+ +..|+..|+. .+...|++++|++.++++ ++.|.. .....+.+.+
T Consensus 494 ~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~~~~~V~~~a~~f 548 (613)
T PF04097_consen 494 KVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPLDPSEVRRCAENF 548 (613)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S-HHHHHHHHHCG
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHH
Confidence 111 2445555543 346789999999888765 677743 3334444433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.96 E-value=29 Score=35.43 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP---TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
....+|..++..+.+.|.++.|...+.++...+... .+...-.-+..+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777777778888888888777776543111 233333445556667777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.95 E-value=26 Score=34.82 Aligned_cols=131 Identities=19% Similarity=0.282 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH-
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCK--SN----QLEEAEGLFQEMKTKGL---KPTSATFNILMDAYSRRMQP- 392 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~- 392 (686)
++...+++.+.+.|+.-+..+|-+....+.. .. ....|..+|+.|++... .++..++..|+.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455777888888887777666553333322 22 35678899999988742 2344555555443 33443
Q ss_pred ---HHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCCh--HHHHHHHHHHHHHcCCCCChhhHhhhHH
Q 044251 393 ---EIVEKLLLELQDMGLEPNAK-SYTCLISAYGRPRKM--SDMAADAFLRMKRVGIKPTSHSYTALIH 455 (686)
Q Consensus 393 ---~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~li~ 455 (686)
+.++.+|+.+.+.|+..+.. -+.+-+-+++..... ...+.++++.+.+.|++.....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 55677888888878766432 333333333332222 2367888999999998887777766543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.76 E-value=47 Score=37.53 Aligned_cols=89 Identities=15% Similarity=0.029 Sum_probs=40.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDH-------VTCSIMITAMRKNGRSAKEAWEFFEKMNRKG----VKLSQEVVGALMK 314 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~ 314 (686)
.-..++++|..++.++...-..|+. ..|+.+-........+++.+.++.+..+..= .......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456666666666665433112111 2344443333322222566665555554431 1122333444445
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044251 315 SFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~ 334 (686)
+..-.|+++.|..+.....+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 55555666666555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.1 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888887743
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.03 E-value=52 Score=37.19 Aligned_cols=223 Identities=15% Similarity=0.065 Sum_probs=117.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCCCChhhHhhhHH
Q 044251 387 SRRMQPEIVEKLLLELQDMGLEPNA-------KSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIKPTSHSYTALIH 455 (686)
Q Consensus 387 ~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 455 (686)
....++.+|..++.++...-..|+. ..++.+-.......+..+.|.++.+..... -.......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888888888887654222221 123333332222223336777776665543 23345667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHH--HHHHHHcCCH--HHHHHHHHHHHhc---CCC---CCHHHHHH
Q 044251 456 AYSVGGWHEKAYAAFENMLREEIKPSIETY---TAL--LDAFRRSGDT--GMMMKIWKLMMSE---KVE---GTRVTFNI 522 (686)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l--l~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~~~ 522 (686)
+..-.|++++|..+.++..+....-+...+ ..+ ...+...|+. ...+..+...... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888776553222233222 222 2334555632 2333333333322 111 12234445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHH--HHHHHHHHhcCCccHHHHHHHHHHHCCCCC----CHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFG----KIGLQPTLMTY--NMLMNAYGRGGQTSKLPQLLKEMATLNIKP----DSVTYST 592 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~ 592 (686)
++.++.+ ++.+..-...-. .....|-...+ ..|+..+...|++++|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 343333332222 22222222222 367777888999999999998887643333 3333333
Q ss_pred HHH--HHHHcCCHHHHHHHHHH
Q 044251 593 MIY--AFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 593 li~--~~~~~g~~~~A~~~~~~ 612 (686)
.+. .....|+.+.|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 333 22456888887777665
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.99 E-value=14 Score=34.16 Aligned_cols=124 Identities=11% Similarity=0.021 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 044251 555 YNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS--GQVPDVKSYEKLRSI 631 (686)
Q Consensus 555 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~ 631 (686)
.+.-+..+.+.+.+.+++.+.++-++. +| |...-..++..|+-.|+|++|..-++-+-.. ...+-...|.+++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455666667777777777666654 44 4445556666777777777777666655433 223344667666666
Q ss_pred HHhhh------h-----hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 632 LDVKV------A-----TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 632 l~a~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
..... . ......|...+-.-.... ..|.+.-...+-+++.+..|..+-+
T Consensus 82 ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h--~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 82 EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALH--SDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcc--cCCcchHHHHHHHHHHhhCCCCCcc
Confidence 53321 0 112344544443332322 1223344555667888888865544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.90 E-value=6.8 Score=35.55 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC---CCHHHHHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK---PDSVTYST 592 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---pd~~~~~~ 592 (686)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ..++-.+|......|++..+...+.++...--. ++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777888888888888888888776543333 344566777777888888888877776542112 12111111
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 044251 593 MIY--AFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 593 li~--~~~~~g~~~~A~~~~~~m~ 614 (686)
... ++...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 3356789999988887664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.87 E-value=7.4 Score=41.34 Aligned_cols=45 Identities=9% Similarity=-0.060 Sum_probs=21.1
Q ss_pred ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+.|+++.|.++..+. .+..-|..|.++....|++..|.+.|....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 444444444443332 233345555555555555555555554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.4 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+|..++.++...|++++|+..++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666777777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.85 E-value=26 Score=33.45 Aligned_cols=268 Identities=13% Similarity=0.150 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhcCCCC
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSA---TFNILMDAYSRRMQPEIVEKLLLELQDM---GL--EPNAKSYTCLISAYGRPRK 426 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 426 (686)
..+++|+.-|++.++....-... ....++....+.+++++.+..|.+|+.. .+ .-+..+.|+++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666665542221222 2334566666677777766666666421 11 1234455666655544433
Q ss_pred hHHHHHHHHHHHHHc-----CCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHH
Q 044251 427 MSDMAADAFLRMKRV-----GIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI-----------KPSIETYTALLD 490 (686)
Q Consensus 427 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~~~~~~ll~ 490 (686)
+ +.....|+...+. +-..-..+-+.|...|...|.+.+...+++++...-. ..-...|..-|+
T Consensus 121 m-~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 M-DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred h-HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 3 4333444332211 0011112334566777788888888888877754311 112356888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHH-----HHHcCCHHHHHHHH-HHHH---hCCCCCCHHH---HHH
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKV-EGTRVTFNILLDG-----FAKQGQYLEARDVV-SEFG---KIGLQPTLMT---YNM 557 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~-----~~~~g~~~~A~~~~-~~~~---~~~~~p~~~~---~~~ 557 (686)
.|....+-.....+|++.+...- -|.+... .+|.- ..+.|++++|..-| +.+. +.| .|...+ |-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 99888888888888888775432 2333333 33333 34678888876543 3333 334 333222 344
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 558 LMNAYGRGGQTSKLPQLLKEMATLNI--KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 558 li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
|...+.+.|- .-|+.-..... .|.....+.|+.+|. .++..+-.++++.- +..+..|+-+-+++-+++
T Consensus 278 LANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~-~~~IM~DpFIReh~EdLl 347 (440)
T KOG1464|consen 278 LANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSN-RSNIMDDPFIREHIEDLL 347 (440)
T ss_pred HHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhh-hccccccHHHHHHHHHHH
Confidence 4445554441 00100011111 233455677887775 45555555555432 335667776555555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.6 Score=28.91 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcCCccHH
Q 044251 552 LMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A 571 (686)
...|+.|...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444443333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.67 E-value=23 Score=32.72 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVK-LSQEVVGA 311 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~-~~~~~~~~ 311 (686)
.-+.+||.|.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|+ +..|.+-+.+.-+.+.. |-...|.-
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR-~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGR-YKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCc-hHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 4567899999999999999999999999988632112222233332 334566 88888888777776532 21222222
Q ss_pred HHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------CCCHHHHHHHHH
Q 044251 312 LMKSFCDEGLKNEALII-QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGL------KPTSATFNILMD 384 (686)
Q Consensus 312 li~~~~~~g~~~~A~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~~~~~ll~ 384 (686)
+ --..-++.+|..- .+..... |..-|...|-.|.- |++. ...+++.+.+-.- ..=..||--|..
T Consensus 175 l---~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 L---NEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred H---HHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 2 2234456666643 3334333 55566555544432 2211 1122333322110 012457888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 044251 385 AYSRRMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~~~ 406 (686)
-+...|+.++|..+|+-.....
T Consensus 246 ~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhccccHHHHHHHHHHHHHHh
Confidence 9999999999999999887654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.4 Score=26.84 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
..+..+..++...|++++|++.++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456667777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=53 Score=36.74 Aligned_cols=256 Identities=10% Similarity=0.038 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..-..-...+++.+++...+..+.. .+.+.......+.+....|+.++|.+....+-..| ......++.++..+
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~ 173 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVW 173 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHH
Confidence 3334444456667777766663322 13566666777777888888877777777765444 33455677777777
Q ss_pred HHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 281 RKNGRS-AKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD------------EGLKNEALIIQMEMEKKGIPSNAIVYNTL 347 (686)
Q Consensus 281 ~~~g~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 347 (686)
.+.|.- .+..++-+..+...| +......++..+.. ..+...+..++ ..++++...-..+
T Consensus 174 ~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~-----~~~~~~~~~~~~~ 245 (644)
T PRK11619 174 QQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA-----RTTGPTDFTRQMA 245 (644)
T ss_pred HHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh-----hccCCChhhHHHH
Confidence 755541 223333344444333 22222222221100 00011111100 0111222111111
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 044251 348 INAY--CKSNQLEEAEGLFQEMKTKG-LKPTS--ATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYG 422 (686)
Q Consensus 348 i~~~--~~~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 422 (686)
+.++ ....+.+.|..++..+.... ..+.. ..+..+.......+...++..++........ +.....--+....
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al 323 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHH
Confidence 2122 12445677777777664432 22221 1233333333333224455555554432221 2233333333333
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 423 RPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
..++. +.+...+..|.... .-...-.--+..++...|+.++|...|+.+.
T Consensus 324 ~~~dw-~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 324 GTGDR-RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HccCH-HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455 55666676664422 1233444556666666788888888887763
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.42 E-value=14 Score=31.94 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=27.3
Q ss_pred cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 213 ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 213 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.++++++..+++.|.--.+ .....-..-...+...|++++|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 5556666666655543222 22222222334456667777777777777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.8 Score=37.41 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRD-----------FKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+|+.=|++++. +.|+ ..++..+..+|...+. +++|...|+++.. ..|+.++|.+-+++-
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444443 4665 4677777777765542 5666666666665 458888888887776
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.77 E-value=0.92 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 505 WKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
|++.++.. |.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 667778888888888888888775
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.50 E-value=46 Score=35.00 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
|....-+++..+..+..+.-+..+..+|+..|- +...|..++.+|... ..+.-..+++++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 444444555555555555555555555554432 344455555555544 334445555554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.46 E-value=21 Score=30.94 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCC
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSK 230 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (686)
..++..-...+.++++..++..+....|.......+.. ..+..+|++++|+++|+.+...+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 34455556689999999999999998887765555544 45568999999999999998753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.12 E-value=9.6 Score=34.61 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=57.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSI-----ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
.-+.++|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.--.+.++.+ +....++-.-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3466778888888888887775 33322 334444455667777777777777776665 3333333444556667
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044251 530 QGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~ 547 (686)
...+++|+.-|+++....
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 777777777777766543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.01 E-value=14 Score=33.16 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ-----------TSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
++|+.-|++.+... +-...++..+..+|...+. +++|...|+++.+ ..|+..+|..-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH----
Confidence 44555555555543 2235667777777765432 4556666666665 4899999988877653
Q ss_pred HHHHHHHHHHHHHCCC
Q 044251 603 FKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 603 ~~~A~~~~~~m~~~g~ 618 (686)
.|-+++.++.+.+.
T Consensus 125 --kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 --KAPELHMEIHKQGL 138 (186)
T ss_dssp --THHHHHHHHHHSSS
T ss_pred --hhHHHHHHHHHHHh
Confidence 46777777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.94 E-value=7.1 Score=30.78 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++++-...+ ...+..+|..+++-+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 45556666666778899999999999999999999999999876633 123556777666655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.92 E-value=3.6 Score=39.93 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=25.3
Q ss_pred hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 216 GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAME 262 (686)
Q Consensus 216 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 262 (686)
+++++.++..=.+.|.++|.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.76 E-value=44 Score=34.08 Aligned_cols=65 Identities=6% Similarity=0.131 Sum_probs=37.2
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP---SIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
...+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+...|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666777777777777766665532111 223333344455556666666666666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.66 E-value=66 Score=35.89 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcc
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRA 213 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (686)
+......++..+.|.|.+++|+++.......-.. ....|...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~--~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQK--IERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-T--TTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHhC
Confidence 4455677899999999999999999444443221 125666667776554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.65 E-value=2.9 Score=26.84 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 588 VTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 588 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
.+++.|..+|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.39 E-value=5.3 Score=39.20 Aligned_cols=93 Identities=18% Similarity=0.047 Sum_probs=46.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
.|.++|.+++|+..|.+..... +.|+++|..-..+|.+..++..|+.-...++..+ ..-...|..-+.+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 4566666666666666654433 2266666666666666666655555444444321 0012233333333334455555
Q ss_pred HHHHHHHHHHCCCCCCH
Q 044251 606 AFFYHKQMVKSGQVPDV 622 (686)
Q Consensus 606 A~~~~~~m~~~g~~p~~ 622 (686)
|.+=++..++ ++|+.
T Consensus 184 AKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHhHHHHHh--hCccc
Confidence 5555555544 33544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.31 E-value=81 Score=35.12 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHHccCChhHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044251 208 PVLGRARMGDDLMVLFKNLPQSKEFR--DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGR 285 (686)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 285 (686)
.-+.+.+.+++|+.+.+..... .+. ....+...|..+...|++++|-...-.|.. -+...|...+..+...++
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~-~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN-EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC-ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 3445678888999888876652 212 456788889999999999999998888874 355666666666666554
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 286 SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
.. .++.-+.......++..|..++..|..
T Consensus 439 -l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 -LT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -cc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 22 222222222233556677777776665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.28 E-value=3.1 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 236 HVYNAAISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666777777777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.94 E-value=21 Score=37.06 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=66.6
Q ss_pred HHHcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHH-------CCCCCC-----
Q 044251 527 FAKQGQYLEARDVVSEFG---KIGLQPT-----LMTYNMLMNAYGRGGQTSKLPQLLKEMAT-------LNIKPD----- 586 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~pd----- 586 (686)
+.-.|++.+|.+++...- ..|...+ -..||.|...+.+.|.+.-+..+|.++++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345688888888776532 1221112 23357777777777877777777777663 465552
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 587 -----SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 587 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
..+.....-.|...|++-.|.+.|.+.++. +.-++..|-.+.+.+
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 123333445678889999999999988865 456676666666555
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.88 E-value=3.6 Score=24.96 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEP 195 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~ 195 (686)
.+..+...+...|++++|++.|+.++...|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455666777777777777777777776655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.77 E-value=2.4 Score=25.50 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPS 196 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~ 196 (686)
+...+...+.+.|++++|++.|+.+....|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455677777788888888888888877653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.11 E-value=3.5 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 235 AHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
..+++.|...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888887777653
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.86 E-value=54 Score=32.02 Aligned_cols=64 Identities=9% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 302 VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK-GIPSNAIVYNTLINAYCKSNQLEEAEGLFQ 365 (686)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (686)
..++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555555555555555555555554443 344455556666666666666555544444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.83 E-value=11 Score=29.77 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 289 EAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
++.+-++.+...++.|++.+..+.+++|.+.+++..|.++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.79 E-value=11 Score=36.80 Aligned_cols=103 Identities=15% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 044251 230 KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN---NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ 306 (686)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~ 306 (686)
|.+..+.+...++..-....+++.+...+-+++.. ...|+. +-.+.++.|.+-. +++++-++..-++.|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky~--pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKYD--PQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHccC--hHHHHHHHhCcchhccccch
Confidence 44455556666666666677888888887777642 111221 2233444444432 67888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
.+++.+|+.+.+.+++.+|.++.-+|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888887777665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.74 E-value=56 Score=32.18 Aligned_cols=172 Identities=9% Similarity=0.010 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTG---MMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
.++..++.+|...+..+ +|..+++.+.... +....++-.-+..+.+.++.+++.+++.+|...- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777787777655 4555666664432 3345556566677777899999999999988642 21334455555
Q ss_pred HHHHh--cCCccHHHHHHHHHHHCCCCCCHH-HH-HHHHH---HHHHcCC------HHHHHHHHHHHHHC-CCCCCHHHH
Q 044251 560 NAYGR--GGQTSKLPQLLKEMATLNIKPDSV-TY-STMIY---AFVRVRD------FKRAFFYHKQMVKS-GQVPDVKSY 625 (686)
Q Consensus 560 ~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~-~~-~~li~---~~~~~g~------~~~A~~~~~~m~~~-g~~p~~~~~ 625 (686)
..+.. ......|...+..+....+.|... .. ..++. ...+.++ .+...+++....+. +...+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 55422 223456777777777655666543 11 11221 1122222 34444445533333 445566666
Q ss_pred HHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHH
Q 044251 626 EKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYK 673 (686)
Q Consensus 626 ~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~ 673 (686)
..+..++ |...-..++ .++-.+|.+-|.-+.
T Consensus 243 ~a~~~LL-----------W~~~~~~~~------~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLL-----------WNKGKKHYK------AKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHH-----------HHHHHHHHh------hcCHHHHHHHHHHHH
Confidence 6666666 554444442 224456666665443
|
It is also involved in sporulation []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.28 E-value=21 Score=28.53 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHccCChh--HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGD--DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
..|..--..+......| ++++-++.+......|.+.+..+.+.++.+-+++..|.++|+.++..- .+....|..++.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33444444444444444 567777777776777899999999999999999999999999887651 122226766665
Q ss_pred HH
Q 044251 279 AM 280 (686)
Q Consensus 279 ~~ 280 (686)
-+
T Consensus 88 El 89 (108)
T PF02284_consen 88 EL 89 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.42 E-value=83 Score=33.26 Aligned_cols=177 Identities=13% Similarity=0.191 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhH
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALI 454 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 454 (686)
|.....+++..+.....+.-++.+..+|...| -+...|..++..|...+. +.-..+++++.+..+. |++.-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n--~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN--EQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc--hhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 44455556666666666666666666666553 245566666666666533 4566666666665443 444344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKPSI------ETYTALLDAFRRSGDTGMMMKIWKLMMSE-KVEGTRVTFNILLDGF 527 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 527 (686)
..|-+ ++.+++..+|.+.... +-|.. ..|.-+... -..+.+....+...+... |..--...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 6666666666666554 22211 122222211 023444455544444433 2222333444444555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
....++++|++++..+++.. ..|..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 55666666666666665554 3344444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.30 E-value=28 Score=27.85 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..+...+|.-+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 45555666667788899999999999999999999999999887654 223333777777665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=64 Score=31.83 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=9.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~ 544 (686)
.+.++...|.. +|...+..+.
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHH
Confidence 34444444442 3444444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.02 E-value=26 Score=32.10 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 288 KEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK---GIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
+.|++.|-++...+.--++.....|...|. ..+.+++.+++-...+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433323333333333332 33344444444443332 1133444444444444444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.0 bits (229), Expect = 1e-19
Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 3/235 (1%)
Query: 278 TAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGI 337
+ S + A + + +E + L++ + + + + +
Sbjct: 64 LQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQL 123
Query: 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQ---EMKTKGLKPTSATFNILMDAYSRRMQPEI 394
++QL A L + K T +N +M ++R+ +
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 395 VEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALI 454
+ +L ++D GL P+ SY + GR + + +M + G+K + L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 455 HAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509
+ + P + LL K+ +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 3e-16
Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 5/245 (2%)
Query: 388 RRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS 447
+R Q +++L +LQ K+ T + R MA ++ P
Sbjct: 34 KRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLS-KQMAGCLEDCTRQAPESPWE 92
Query: 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKL 507
L+ + A + ++ + A + + + +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 508 MMSEKVEG---TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564
++ + T +N ++ G+A+QG + E V+ GL P L++Y + GR
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 565 GGQTSK-LPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623
Q + + + L++M+ +K ++ + ++ R K Q+P
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 624 SYEKL 628
+ KL
Sbjct: 273 NTSKL 277
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 1e-11
Identities = 19/144 (13%), Positives = 50/144 (34%)
Query: 210 LGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPD 269
+ + L+V+ Q ++ +YNA + G G + + ++ + PD
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199
Query: 270 HVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329
++ + + M + + A E+M+++G+KL L+ + ++
Sbjct: 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
Query: 330 MEMEKKGIPSNAIVYNTLINAYCK 353
+ + L+
Sbjct: 260 PTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 31/238 (13%), Positives = 80/238 (33%), Gaps = 19/238 (7%)
Query: 249 GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN-RKGVKLSQE 307
+D A + Y+ EA V + + +A E W+ K+N K
Sbjct: 214 SNFDRAKECYK--EALMVDAKCYEA--FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 308 VVGALMKSFCDEGLKNEALIIQMEMEK--KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQ 365
+ +L ++ + L + G+ ++ + + ++ + +
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329
Query: 366 EMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPN-AKSYTCLISAYGR 423
++ + P + + + + + + + + +L D P A ++ + Y
Sbjct: 330 KILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLC 385
Query: 424 PRKMSDMAADAFLRMKRVGIKPTSHS-YTALIHAYSVGGWHEKAYAAFENMLREEIKP 480
A F K + P + H++++ G H++A +A+ R +
Sbjct: 386 -VNKISEARRYFS--KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQ 438
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 36/281 (12%), Positives = 91/281 (32%), Gaps = 46/281 (16%)
Query: 217 DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG--RYDDAWKAYEAMEANNVRPDHVTC- 273
D + + + + CG + + A +E +A +P +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE--KALEKKPKNPEFT 175
Query: 274 SIMITAMRKNGR--SAKEAWEFFEKMNRKGVKLSQEVVGA-------LMKSFCDEGLKNE 324
S + A + ++ A + R+ ++L+ + L K + + E
Sbjct: 176 SGLAIASYRLDNWPPSQNAIDPL----RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231
Query: 325 AL-IIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATF-NIL 382
+++ +EK P V + Y + ++ ++A L + K P +A +
Sbjct: 232 GEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLK--KALEYIPNNAYLHCQI 287
Query: 383 MDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKR-V 441
Y ++ ++ ++ RK+ ++ A +K+
Sbjct: 288 GCCYRAKV---------FQVMNLREN-----------GMYGKRKLLELIGHAVAHLKKAD 327
Query: 442 GIKPT-SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS 481
+ L +++ +E+A F+ +E+ P
Sbjct: 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 23/146 (15%)
Query: 234 DAHVYNAAISGLFWCGRYDDAWKAYE-AMEANNVRPDHVTC-SIMITAMRKNGRSAKEAW 291
V +A D A + + A+E P++ + R
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVFQVMNLR 302
Query: 292 EFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351
E RK ++L V L +A + V + L + +
Sbjct: 303 ENGMYGKRKLLELIGHAVAHL----------KKADEAN--------DNLFRVCSILASLH 344
Query: 352 CKSNQLEEAEGLFQEMKTKGLKPTSA 377
++Q EEAE FQ+ +K L P +
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAK 370
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQE----MKTKGLKPTSAT 378
A+ + E PS Y + + K ++++A + + G +
Sbjct: 248 KRAIAVFEESNIL--PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305
Query: 379 FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAY 421
F L Y E ++ L+ L + + + ++ Y
Sbjct: 306 FEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 19/184 (10%)
Query: 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNI 381
+ + K ++ + L AY K+ ++A ++ + P +
Sbjct: 36 DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK--ELLQKAPNNVDCLEA 93
Query: 382 LMDAYSRRMQPE----IVEKLLLELQDMGLEP-NAKSYTCLISAYGRPRKMSDMAADAFL 436
+ R Q + + EK+L LE N + L + Y + +
Sbjct: 94 CAEMQVCRGQEKDALRMYEKIL------QLEADNLAANIFLGNYYYLTAEQEKKKLETD- 146
Query: 437 RMKRVGIKPT-SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495
K++ ++ + +EKA + + ++ PS E L R
Sbjct: 147 -YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDKILRIE 203
Query: 496 GDTG 499
+
Sbjct: 204 KEVN 207
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 32/179 (17%), Positives = 69/179 (38%), Gaps = 13/179 (7%)
Query: 338 PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILM-DAYSRRMQPEIVE 396
P++A N L N + +EEA L++ K + P A + + ++ + +
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 397 KLLLELQDMGLEPN-AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSH-SYTALI 454
E + + P A +Y+ + + + + A + R + I P +++ L
Sbjct: 64 MHYKEA--IRISPTFADAYSNMGNTLKEMQDV-QGALQCYTRA--IQINPAFADAHSNLA 118
Query: 455 HAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512
+ G +A A++ L ++KP + Y L + D + K ++S
Sbjct: 119 SIHKDSGNIPEAIASYRTAL--KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.8 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.65 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.14 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.03 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.98 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.82 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.78 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.73 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.53 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.49 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.47 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.43 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.98 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.11 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.01 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.01 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.56 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.04 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.11 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.8 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.78 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.67 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.42 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.32 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.03 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.52 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.82 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.97 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 81.94 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.73 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.71 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.12 Aligned_cols=453 Identities=10% Similarity=0.021 Sum_probs=394.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..++..+.+.|++++|+.+|+.+....| +..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 455678899999999999999999999997766 3478889999999999999999999998642 47899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH-hC--------------CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 243 SGLFWCGRYDDAWKAYEAME-AN--------------NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE 307 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~-~~--------------g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~ 307 (686)
.+|.+.|++++|+++|+++. .. +.+++..+|+.++.+|.+.|+ +++|+++|++|.+.+.. +..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~ 235 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FDRAKECYKEALMVDAK-CYE 235 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCch-hhH
Confidence 99999999999999999532 21 223458899999999999999 99999999999987533 333
Q ss_pred HHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 308 VVGAL--------------------------------------MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLIN 349 (686)
Q Consensus 308 ~~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 349 (686)
.+..+ +..|.+.|++++|.++|+.+.+. +++..+|+.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 33333 55666889999999999998876 579999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHH
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSD 429 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 429 (686)
+|.+.|++++|+++|+++.+.+.. +..+++.++.++.+.|++++|..+++++.+.. ..+..++..+...|.+.|+. +
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~-~ 390 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI-S 390 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH-H
Confidence 999999999999999999987544 67789999999999999999999999998653 44788999999999999887 8
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+|..+|+++.+..+. +..+|+.++.+|.+.|++++|+.+|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999887543 6889999999999999999999999999986 34578999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 510 SEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQPT--LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 510 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 876 568899999999999999999999999999876 66777 8899999999999999999999999999764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+.+..+|..++.+|.+.|++++|.++++++++.. .-+...+..+..++
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3479999999999999999999999999999864 23456777776665
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=331.99 Aligned_cols=445 Identities=10% Similarity=-0.015 Sum_probs=387.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 199 SPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMIT 278 (686)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 278 (686)
+...|..++..|.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 457889999999999999999999999874 2368889999999999999999999999998654 788999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 279 AMRKNGRSAKEAWEFFEKMNRK---------------GVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIV 343 (686)
Q Consensus 279 ~~~~~g~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 343 (686)
+|.+.|+ +++|+++|+++... +...+..+|+.++..|.+.|++++|.++|+++.+.+.. +...
T Consensus 159 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 159 CLVKLYD-WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHTTC-HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHhh-HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999 99999999953222 12335789999999999999999999999999987533 4444
Q ss_pred HHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 344 YNTL--------------------------------------INAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA 385 (686)
Q Consensus 344 ~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (686)
+..+ +..|.+.|++++|.++|+++.+. .++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 4433 45566789999999999998875 4689999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (686)
|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|+. ++|..+|+.+....+. +..+|+.++.+|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEK-NKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999877533 677889999999999887 8899999999876543 78899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 466 AYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 466 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
|..+|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999885 34467899999999999999999999999999876 56888999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044251 546 IGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQV 619 (686)
Q Consensus 546 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 619 (686)
.. +.+..+|+.++.+|.+.|++++|.++|++|.+. +..|+ ..+|..++.+|.+.|++++|.++++++++.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 76 458999999999999999999999999999876 66887 7899999999999999999999999999865 2
Q ss_pred CCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 620 PDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 620 p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
.+..+|..++.++. ..|+.++|.+.|.++.+.+|++++.
T Consensus 548 ~~~~~~~~l~~~~~------------------------~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 548 NDANVHTAIALVYL------------------------HKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp CCHHHHHHHHHHHH------------------------HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CChHHHHHHHHHHH------------------------HhCCHHHHHHHHHHHHhcCCCChHH
Confidence 36777777776662 4457899999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-26 Score=237.33 Aligned_cols=282 Identities=15% Similarity=0.105 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 309 VGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR 388 (686)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 388 (686)
+..+...+.+.|++++|...|+.+.+.. +.+...+..+...+...|++++|.++|+++.+.... +..+|..+..++..
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3333333333333344444333333332 112333333444444444444444444444433211 23344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHH
Q 044251 389 RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 389 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
.|++++|...|+++.+... .+...+..+...+...++. ++|...|++.....+. +..++..+..+|.+.|++++|+.
T Consensus 182 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIF-DRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444433221 1223333333333333333 3344444444333221 34444555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.|+++.+.. +.+..++..+..++.+.|++++|...++++++.. +.+..+++.+...+...|++++|...++++.+..
T Consensus 259 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 335 (388)
T 1w3b_A 259 TYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF- 335 (388)
T ss_dssp HHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555431 2234445555555555555555555555555443 3445555555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRV 600 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~ 600 (686)
+.+..++..++.+|.+.|++++|...|+++.+ +.| +...|..+..++...
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 22445555555555555555555555555553 233 244444444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-26 Score=239.85 Aligned_cols=384 Identities=14% Similarity=0.054 Sum_probs=337.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
++..+.+.|++++|++.++.+....|.. +..+..+..++...|++++|...++..... .+.+..+|..++.++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCC
Confidence 3677889999999999999999988765 477888889999999999999999988773 3478999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|++.|+++.... +.+..+|..+..++...|+ +++|.+.|+++++..+. +...+..+...+...|++++|...|
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGD-MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSC-SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999998763 3456789999999999998 99999999999987533 5667888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
+++.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+.. +...|..+..++...|++++|...+++...... .
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence 9999874 447899999999999999999999999999987543 677899999999999999999999999987642 2
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
+..++..+...+...|+. ++|...|+++.+.++. +..+|..+..+|.+.|++++|+..|+++.+. .+.+..++..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLI-DLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH
Confidence 578888899999999887 8899999999987654 5778999999999999999999999999986 456789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
..+...|++++|...++++++.. +.+..++..++..|.+.|++++|...|+++.+.. +.+...|..+...+...|+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999875 6678899999999999999999999999998865 4478888888888877663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=261.69 Aligned_cols=209 Identities=15% Similarity=0.191 Sum_probs=156.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCCh-hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------
Q 044251 426 KMSDMAADAFLRMKRVGIKPTS-HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGD------- 497 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------- 497 (686)
+....+..+.+.+.+.+..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+.
T Consensus 4 ~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 4 HMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred cccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 3334455666666666554332 35677788888888888888888888888888888888888888876553
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 044251 498 --TGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 498 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 575 (686)
++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 576 KEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 576 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||..++..+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888887744
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=257.69 Aligned_cols=205 Identities=12% Similarity=0.146 Sum_probs=179.8
Q ss_pred HHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC--------HHH
Q 044251 219 LMVLFKNLPQSKEFRD-AHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRS--------AKE 289 (686)
Q Consensus 219 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~--------~~~ 289 (686)
+..+.+.+...+.... ..+++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4455555555444443 3468899999999999999999999999999999999999999999876541 688
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 370 KGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 370 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
.|+.||..||+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998865
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-23 Score=225.35 Aligned_cols=454 Identities=8% Similarity=-0.032 Sum_probs=329.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.+.+......+.+.|++++|+..|+.+....| ++..+..++.++.+.|++++|+..|+++.... +.+..+|..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35667788999999999999999999999886 46899999999999999999999999988744 368889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
++.+.|++++|+..|+++...+ +++......++..+..... ...+.+.+..+...+..++...+..-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQA-MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHH-HHHHTTC---------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999998875 3444444444444433322 3333333333222221111111111000000111111
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHH
Q 044251 324 EALIIQMEMEKKGI---------PSNAIVYNTLINAYCK---SNQLEEAEGLFQEMKT-----KGLK--------PTSAT 378 (686)
Q Consensus 324 ~A~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~ 378 (686)
....+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ .... .+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111111 1225555555555554 8999999999999887 3111 13457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH
Q 044251 379 FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS 458 (686)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (686)
+..++.++...|++++|..+++.+.+.... ...+..+...+...|+. +.|...++.+....+. +...+..+...|.
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDS-TEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCC-TTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCH-HHHHHHHHHHhhcCcC-CHHHHHHHHHHHH
Confidence 778888999999999999999999887544 77788888888888887 7799999998877544 6778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARD 538 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 538 (686)
..|++++|+..|+++.... +.+...+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998863 3356788889999999999999999999999875 5567789999999999999999999
Q ss_pred HHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 539 VVSEFGKIGLQ-PT----LMTYNMLMNAYGR---GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYH 610 (686)
Q Consensus 539 ~~~~~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 610 (686)
.++++.+.... ++ ..+|..++.+|.. .|++++|...++++.... +.+..++..+..++...|++++|...+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99998764322 11 4489999999999 999999999999998753 336888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 044251 611 KQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 611 ~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+++++.. |+.......+...
T Consensus 473 ~~a~~~~--~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 473 EESADLA--RTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHC--SSHHHHHHHHHHH
T ss_pred HHHHHhc--cccHHHHHHHHHH
Confidence 9999854 7665444444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-21 Score=203.18 Aligned_cols=339 Identities=12% Similarity=0.056 Sum_probs=165.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 184 LYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
...+..+....|. ++..+..++..+.+.|++++|+.+|+++... .+.+..+|..++.++...|++++|+..|+++.+
T Consensus 12 ~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 12 DLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -----------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444443332 2355555555566666666666666555542 224555566666666666666666666666554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHH
Q 044251 264 NNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ---EVVGALMKS------------FCDEGLKNEALII 328 (686)
Q Consensus 264 ~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~ 328 (686)
.+ +.+..++..+...+...|+ +++|.+.|+++.+.... +. ..+..++.. +...|++++|...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGK-LDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 42 2334555555555555555 56666666665554311 22 334433222 4444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044251 329 QMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLE 408 (686)
Q Consensus 329 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 408 (686)
++.+.+.. +.+..++..++.+|.+.|++++|+.+|+++.+... .+..+|..++.++...|++++|...|+++... .
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 55544432 22444444555555555555555555554444321 13444444555555555555555555544432 1
Q ss_pred CCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HH
Q 044251 409 PNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS-----IE 483 (686)
Q Consensus 409 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~ 483 (686)
|+.......+.. +. ....+..++..|...|++++|+.+|+++... .|+ ..
T Consensus 242 p~~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 242 QDHKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred CChHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 211111110000 00 0011222355666666666666666666653 233 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
.+..+..++.+.|++++|...++.+++.. +.+..+|..+..+|...|++++|...++++.+.. +-+...+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 55556666666666666666666666554 4455666666666666666666666666666543 22455555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-22 Score=216.22 Aligned_cols=446 Identities=9% Similarity=-0.059 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..+...+..+.+.|++++|+..|+++.... |+..+|..++.++.+.|++++|+..|+++.+.+ +.+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456677777888888888888888877643 578888888888888888888888888887663 44567788888888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
...|+ +++|...|+++...+. ++......++..+........+.+.+..+...+..++...+................
T Consensus 84 ~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGK-FADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTC-HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhh-HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 88887 8888888888887753 343444444444444333333333333332222212111111111111111111111
Q ss_pred HHHHHHHHHCCCC--------C-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCCC--------CHHHHH
Q 044251 361 EGLFQEMKTKGLK--------P-TSATFNILMDAYSR---RMQPEIVEKLLLELQD-----MGLEP--------NAKSYT 415 (686)
Q Consensus 361 ~~~~~~m~~~g~~--------p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~ 415 (686)
..+...+...... | +...+..+...+.. .|++++|..+++++.+ ....| +...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111111 1 24455555555554 8999999999999987 31122 345667
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 495 (686)
.+...+...|+. +.|...|+.+....+. ...+..+..+|...|++++|+..++++... .+.+...+..+...+...
T Consensus 242 ~~~~~~~~~~~~-~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDP-LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCH-HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHh
Confidence 777788888787 8899999999988655 888999999999999999999999999885 344668899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 575 (686)
|+++.|...++++++.. +.+..++..+...|...|++++|..+++++.+.. +.+..+|..++..|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999876 5567789999999999999999999999998765 447789999999999999999999999
Q ss_pred HHHHHCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHH
Q 044251 576 KEMATLNIK-PD----SVTYSTMIYAFVR---VRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAI 647 (686)
Q Consensus 576 ~~m~~~g~~-pd----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~ 647 (686)
+++....-. ++ ..++..++.++.. .|++++|...++++++.. ..+...+..++.++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~--------------- 459 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK--------------- 459 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH---------------
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH---------------
Confidence 999864211 11 3488999999999 999999999999998754 12344544444444
Q ss_pred HHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 648 LGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 648 ~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
...|..++|...|.++.+..|++++.
T Consensus 460 ---------~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 460 ---------LQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp ---------HHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred ---------HHhcCHHHHHHHHHHHHHhccccHHH
Confidence 13457788899999999988877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-21 Score=211.52 Aligned_cols=432 Identities=10% Similarity=0.026 Sum_probs=329.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
..+.+......+.+.|++++|+..|+.+....|.. +..+..++.++.+.|++++|+..|+++.... +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE--PVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 34667888999999999999999999999988754 5899999999999999999999999988744 36899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG------VKLSQEVVGALMKSF 316 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~ 316 (686)
.++...|++++|+..|+.+ .. .|+.. ...+..+...+. ...|...+++++... ..|+... +..+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~ 170 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNL-NKQAMKVLNENLSKDEGRGSQVLPSNTS----LASF 170 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHH-HHHHHHHHHHHCC-------CCCCCHHH----HHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHH-HHHHHHHHHHHHHhCccccccccchHhH----HHHH
Confidence 9999999999999999744 32 33322 122333444444 678888998886541 2334333 3344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC-------HHHHH
Q 044251 317 CDEGLKNEALIIQMEMEKKGIPSNAI-VYNTLINAYC--------KSNQLEEAEGLFQEMKTKGLKPT-------SATFN 380 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~ 380 (686)
....+.+.+...+...... .+... ....+...+. ..|++++|..+|+++.+.... + ..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 4556666555444332222 12211 2233332222 235899999999999876433 2 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhc
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVG 460 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (686)
.+...+...|++++|...++.+.+. .|+...+..+...+...|+. +.|...|+.+....+. +..+|..+...|...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS-QEFFKFFQKAVDLNPE-YPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH-HHHHHHHHHHhccCCC-CHHHHHHHHHHHHhc
Confidence 7778889999999999999999886 45578888888899999887 8899999999887654 678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 461 GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVV 540 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 540 (686)
|++++|+..|+++.... +.+...+..+...+...|++++|..+++++++.. +.+..++..+...|...|++++|...+
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998863 3356788999999999999999999999999886 567788999999999999999999999
Q ss_pred HHHHhCCC-----CCCHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 541 SEFGKIGL-----QPTLMTYNMLMNAYGRG----------GQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 541 ~~~~~~~~-----~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
+++.+... ......+..+..+|.+. |++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 99875431 11233455566778888 99999999999999753 3368899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 044251 606 AFFYHKQMVKSG 617 (686)
Q Consensus 606 A~~~~~~m~~~g 617 (686)
|.+.++++++..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-21 Score=205.74 Aligned_cols=368 Identities=11% Similarity=0.078 Sum_probs=238.5
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 269 DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLI 348 (686)
Q Consensus 269 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 348 (686)
+...+..+...+...|+ +++|+.+|+++++.. +.+..++..+...+...|++++|...|+.+.+.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44566666666666666 677777777766653 2356666666677777777777777777766653 23566666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTS---ATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPR 425 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 425 (686)
.+|.+.|++++|.+.|+++.+.... +. ..+..++..+...+. ..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----------------------~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRL-----------------------RSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHcC
Confidence 7777777777777777766654321 22 444444333211111 11122233344
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 426 KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIW 505 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 505 (686)
+. ++|..+|+.+.+..+. +...+..++.+|.+.|++++|+.+|+++.+. .+.+..++..+..+|...|++++|...+
T Consensus 158 ~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 158 DY-TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp CH-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44 6677777766665433 5666777777777777777777777777664 2345677777777777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcc
Q 044251 506 KLMMSEKVEGTRVTFNIL------------LDGFAKQGQYLEARDVVSEFGKIGLQPT----LMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 506 ~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 569 (686)
+.+++.. +.+...+..+ +..|.+.|++++|..+|+++.+.... + ...|..++.++.+.|+++
T Consensus 235 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 7777654 3344444444 78889999999999999999875422 3 457888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhhhhcchhhhHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSILDVKVATKNRRDKSAIL 648 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l~a~~~~~~~~~~~~~~ 648 (686)
+|+.+++++.... +.+..+|..++.+|...|++++|...++++++.. |+ ...+..+..+.......... ..
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~-~~---- 384 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKR-DY---- 384 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHSC-CS----
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHhhcccch-hH----
Confidence 9999999998742 3368999999999999999999999999999753 54 55666666554332211111 11
Q ss_pred HHHHhcccc-hhhcccchhHHHHH-HHhhCCCC
Q 044251 649 GIINSKMGM-VKAKKKGKKDEFWK-YKKRHPRT 679 (686)
Q Consensus 649 ~~~~~~~~~-~~~~~~~a~~~f~~-~~~~~p~~ 679 (686)
+...|. ..+..++++..|.+ +++.+|++
T Consensus 385 ---y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 385 ---YKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp ---GGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred ---HHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 111221 11234566777776 77777754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=198.39 Aligned_cols=437 Identities=10% Similarity=-0.028 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 200 PRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
...+..++..+.+.|++++|+..|+++.... +.++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4677888888999999999999999887744 3688999999999999999999999999987764 4567788888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK------GIPSNAIVYNTLINAYCK 353 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~ 353 (686)
+...|+ +++|+..|+ ...... + .....+..+...+....|...++.+... ...|+. ..+..+..
T Consensus 103 ~~~~g~-~~~A~~~~~-~~~~~~--~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 103 NESLGN-FTDAMFDLS-VLSLNG--D--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHTC-HHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHcCC-HHHHHHHHH-HHhcCC--C--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999998 999999996 443322 2 1222344555566677888888887554 122333 33444556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 044251 354 SNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDAYS--------RRMQPEIVEKLLLELQDMGLEPN------AKSYTCLI 418 (686)
Q Consensus 354 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~--------~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~ll 418 (686)
..+.+.+...+...... .+... ....+...+. ..+++++|..+++.+.+...... ...+..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHH
Confidence 66776666555433322 22222 2222222222 23578999999999986532211 22455555
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDT 498 (686)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 498 (686)
..+...|+. +.|...|+.+.... |+...+..+...|...|++++|+..|+++.... +.+..++..+...+...|++
T Consensus 251 ~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 251 IFHFLKNNL-LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcccH-HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 667777776 88999999999875 447888899999999999999999999998863 44678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 044251 499 GMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEM 578 (686)
Q Consensus 499 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 578 (686)
+.|...++++++.. +.+..++..+...|...|++++|..+++++.+.. +.+...|..+...|...|++++|...++++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999876 5567889999999999999999999999998876 447889999999999999999999999998
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhh
Q 044251 579 ATLN-----IKPDSVTYSTMIYAFVRV----------RDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRD 643 (686)
Q Consensus 579 ~~~g-----~~pd~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~ 643 (686)
.+.. ..-....+..+..++... |++++|..+++++++.. ..+...+..++.++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~---------- 473 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKL---------- 473 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------
Confidence 7532 111233455566778888 99999999999999864 234555555555552
Q ss_pred hHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcc
Q 044251 644 KSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQS 681 (686)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~ 681 (686)
..|+.++|+..|.++.+..|++++
T Consensus 474 --------------~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 474 --------------QMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp --------------HTTCHHHHHHHHHHHHHHC--CHH
T ss_pred --------------HhccHHHHHHHHHHHHHhCCCcHH
Confidence 334667777777777777776554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-17 Score=168.63 Aligned_cols=328 Identities=10% Similarity=0.043 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 350 (686)
..+..+...+...|+ +++|+..|+++++... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQ-LADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345555555556665 6666666666655432 245555556666666666666666666655542 2245555566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLK--PTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMS 428 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 428 (686)
+...|++++|...|+++.+.... .+...+..+..... + ..+..+...+...|+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~----------------~~~~~~a~~~~~~~~~- 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M----------------QRLRSQALDAFDGADY- 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHTTCH-
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHccCH-
Confidence 66666666666666665554210 01222222211100 0 0011123455556565
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
++|..+++.+.+..+. +...+..+..++...|++++|+..++++... .+.+..++..+...+...|+++.|...++.+
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7788888887776543 5677888888888888888888888888875 3456778888888888888888888888888
Q ss_pred HhcCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCccHHH
Q 044251 509 MSEKVEGTRVTFN------------ILLDGFAKQGQYLEARDVVSEFGKIGLQPTL----MTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 509 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 572 (686)
++.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..+|...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8765 34444333 2366788999999999999998876522 44 33556888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSIL 632 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l 632 (686)
..++++.+.. +.+..++..+..++...|++++|...++++++.. |+ ...+..+..+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 9999999752 3368899999999999999999999999999754 55 45555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-17 Score=168.59 Aligned_cols=315 Identities=12% Similarity=0.048 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 200 PRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
+..+..++..+.+.|++++|+..|+++.... +.+..++..+...+...|++++|+..|+++.+.. +.+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567777778888888888888888776633 3567788888888888888888888888877653 3356677777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 280 MRKNGRSAKEAWEFFEKMNRKGVK--LSQEVVGAL------------MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYN 345 (686)
Q Consensus 280 ~~~~g~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 345 (686)
+...|+ +++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 81 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGK-LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTC-HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCC-hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 778887 88888888888775420 133344333 355566666666666666666553 23556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 044251 346 TLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPR 425 (686)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 425 (686)
.+...+...|++++|...|+++.+.... +..++..+..++...|++++|...++.+.+.. |+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~------------ 223 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR------------ 223 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchH------------
Confidence 6666666666666666666666654322 45556666666666666666666666655432 11110
Q ss_pred ChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 044251 426 KMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI----ETYTALLDAFRRSGDTGMM 501 (686)
Q Consensus 426 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a 501 (686)
+...+..+. .......+...+.+.|++++|...++++..... .+. ..+..+..++...|+++.|
T Consensus 224 -----~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 224 -----CFAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -----HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHH
Confidence 111111111 111122234455666666666666666655321 122 1123344445555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 502 MKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
...++.+++.. +.+..++..+...|...|++++|...|+++.+.
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555443 334445555555555555555555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-15 Score=159.28 Aligned_cols=354 Identities=12% Similarity=0.052 Sum_probs=247.4
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCC
Q 044251 233 RDAHVYNAAISGLFW----CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK----NGRSAKEAWEFFEKMNRKGVKL 304 (686)
Q Consensus 233 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~~~~~ 304 (686)
.++..+..+...|.. .+++++|+..|++..+.| +...+..|...+.. .++ .++|.++|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---
Confidence 345555555555555 566666666666665542 34455555555555 444 666666666666554
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCH
Q 044251 305 SQEVVGALMKSFCD----EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTS 376 (686)
Q Consensus 305 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 376 (686)
+...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|++.|++..+.| +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555556666665 566677777776666654 45566666666665 567777777777766653 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCChh
Q 044251 377 ATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR----PRKMSDMAADAFLRMKRVGIKPTSH 448 (686)
Q Consensus 377 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~ 448 (686)
..+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .++. ++|..+|++..+.+ +..
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY-TQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC---CHH
Confidence 566666666666 667777777777766653 34445455554442 3344 66777777776653 455
Q ss_pred hHhhhHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHH
Q 044251 449 SYTALIHAYSV----GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS-----GDTGMMMKIWKLMMSEKVEGTRVT 519 (686)
Q Consensus 449 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~ 519 (686)
.+..+...|.. .++.++|+..|++..+.+ +...+..+...|... ++.++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 66666666766 788899999998887653 556777777777776 89999999999988765 4567
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 520 FNILLDGFAKQG---QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQTSKLPQLLKEMATLNIKPDSVTYST 592 (686)
Q Consensus 520 ~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 592 (686)
+..+...|...| ++++|...|++..+.+ +...+..|...|.. .+++++|..+|++..+.| +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777777887766 7889999999988764 67888889999988 789999999999998865 5778888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 044251 593 MIYAFVR----VRDFKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 593 li~~~~~----~g~~~~A~~~~~~m~~~g~ 618 (686)
|...|.. .+++++|..+|+++.+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8888888 8999999999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-15 Score=161.51 Aligned_cols=353 Identities=12% Similarity=0.038 Sum_probs=281.5
Q ss_pred CHHHHHHHHHHHHc----cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 044251 199 SPRACSVLFPVLGR----ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW----CGRYDDAWKAYEAMEANNVRPDH 270 (686)
Q Consensus 199 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 270 (686)
++.++..+...|.. .+++++|+..|++..+. .+...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44677777777776 78888888888887764 467788888888888 888889988888887754 55
Q ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 271 VTCSIMITAMRK----NGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD----EGLKNEALIIQMEMEKKGIPSNAI 342 (686)
Q Consensus 271 ~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~ 342 (686)
..+..|...+.. .++ +++|..+|++..+.| +...+..|...|.. .+++++|.+.|+...+.| +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVD-KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 666667777766 555 888999998888775 56777778888877 788899999998888875 677
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 343 VYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSY 414 (686)
Q Consensus 343 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 414 (686)
.+..|...|.. .+++++|+++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88888888887 788999999998888764 55677778887775 788999999998887754 34455
Q ss_pred HHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 415 TCLISAYGR----PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVG-----GWHEKAYAAFENMLREEIKPSIETY 485 (686)
Q Consensus 415 ~~ll~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~ 485 (686)
..+-..|.. .++. ++|..+|+...+.| +...+..+...|... +++++|+..|++..+.+ +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~-~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEP-LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCH-HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCH-HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 555555544 5555 78999999888764 566777788888877 89999999999998864 55677
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 486 TALLDAFRRSG---DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 486 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
..+...|...| +.++|...|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77877887766 7899999999999874 67788889999988 899999999999998865 67888999
Q ss_pred HHHHHh----cCCccHHHHHHHHHHHCCC
Q 044251 559 MNAYGR----GGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 559 i~~~~~----~g~~~~A~~l~~~m~~~g~ 583 (686)
...|.+ .++.++|...|++..+.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999998 8999999999999998753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-16 Score=168.46 Aligned_cols=405 Identities=10% Similarity=0.018 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..|..++.. .+.|++++|+.+|+++.. ..|.+...|..++..+.+.|++++|..+|+++... .|+...|...+...
T Consensus 14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 14 DAWSILIRE-AQNQPIDKARKTYERLVA-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHH-HHSSCHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Confidence 555555552 455666666666666555 23345566666666666666666666666666554 35555555544322
Q ss_pred H-HcCCCHHHHH----HHHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 281 R-KNGRSAKEAW----EFFEKMNRK-GVKL-SQEVVGALMKSFCD---------EGLKNEALIIQMEMEKKGIPSNAIVY 344 (686)
Q Consensus 281 ~-~~g~~~~~a~----~~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~ 344 (686)
. ..|+ .+.|. ++|++.+.. |..| +...|..++....+ .|+++.|..+|+..++.........|
T Consensus 90 ~~~~~~-~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGK-LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHTTT-STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHccc-hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 2232 33333 245444432 3222 34455555544433 45666666666666552111111233
Q ss_pred HHHHHHH-------------HHcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc----C
Q 044251 345 NTLINAY-------------CKSNQLEEAEGLFQEMK------TKG---LKPT--------SATFNILMDAYSRR----M 390 (686)
Q Consensus 345 ~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~ll~~~~~~----~ 390 (686)
....... .+.++++.|..+++.+. +.. +.|+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2222110 12345677777666532 111 2333 23455444333221 2
Q ss_pred CH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-------CCChH------HHHHHHHHHHHH-cCCCCChhhHhh
Q 044251 391 QP----EIVEKLLLELQDMGLEPNAKSYTCLISAYGR-------PRKMS------DMAADAFLRMKR-VGIKPTSHSYTA 452 (686)
Q Consensus 391 ~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~------~~A~~~~~~~~~-~~~~~~~~~~~~ 452 (686)
+. +.+..+|++..... .-+...|..+...+.. .|+.. +.|..+|++..+ ..+ .+...|..
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~ 326 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFA 326 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 22 36677888877652 2356666666666553 55652 278888888876 322 25778888
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHH
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPS-I-ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG-FAK 529 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 529 (686)
++..+.+.|++++|..+|+++++. .|+ . ..|...+..+.+.|+++.|..+|++.++.. +.+...|...+.. +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHH
Confidence 888899999999999999999884 443 3 478888888888899999999999998764 3333333332222 335
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKPD--SVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd--~~~~~~li~~~~~~g~~~~A 606 (686)
.|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999887764 4478889999999999999999999999998753 2232 44777778888888999999
Q ss_pred HHHHHHHHHC
Q 044251 607 FFYHKQMVKS 616 (686)
Q Consensus 607 ~~~~~~m~~~ 616 (686)
..+.+++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-16 Score=162.04 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=65.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCCHHHHHHHH
Q 044251 453 LIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK--------VEGTRVTFNILL 524 (686)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li 524 (686)
+...|...|++++|...++++.+. .+.+...+..+...+...|++++|...++++++.. .+....++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 333444444444444444444332 12233344444444444444444444444443321 122234555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAF 597 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~ 597 (686)
..|...|++++|...++++.+.. +.+..+|..+..+|.+.|++++|.+.++++.+. .| +...+..+..++
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 55555555555555555555443 224455555555555555555555555555532 33 344455555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=162.20 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 341 AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
...+..++..+...|++++|+++|+++.+.... +...+..++.++...|++++|..+++++.+... .+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 334444444555555555555555555443221 222333344444555555555555555544321 133444444444
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
+...|+..+.|...|+++....+. +...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 444441225566666655554332 45667788888888899999999998888753 3345667778888889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCccHHH
Q 044251 501 MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG--------LQPTLMTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 501 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 572 (686)
|...++++++.. +.+..++..+...|...|++++|...++++.+.. .+.+..+|..+..+|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988776 5677888888999999999999999998877532 1334678888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
..++++.+.. +.+..++..+..++...|++++|..+++++++.. ..+...+..++.++..
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHH
Confidence 9999988753 3357788888889999999999999999887643 2356677777777743
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-15 Score=162.68 Aligned_cols=409 Identities=11% Similarity=0.038 Sum_probs=301.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
-+...+..++. +.+.|++++|..+|+.++...|.. ...|...+..+.+.|++++|..+|++..... |++..|...
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~--~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSS--GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 36777888887 478999999999999999987754 5899999999999999999999999998743 588888888
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHCCCCCC
Q 044251 242 ISGL-FWCGRYDDAWK----AYEAMEAN-NVRP-DHVTCSIMITAMRK---------NGRSAKEAWEFFEKMNRKGVKLS 305 (686)
Q Consensus 242 i~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~g~~~~~a~~~~~~m~~~~~~~~ 305 (686)
+... ...|++++|.+ +|+..... |..| +...|...+..... .|+ ++.|..+|++.++......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR-ITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH-HHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH-HHHHHHHHHHHHhchhhhH
Confidence 8643 45677777665 77776543 5444 56778777776554 566 8999999999998421111
Q ss_pred HHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHHc-
Q 044251 306 QEVVGALMKSF-------------CDEGLKNEALIIQMEME------KKG---IPSN--------AIVYNTLINAYCKS- 354 (686)
Q Consensus 306 ~~~~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~g---~~~~--------~~~~~~li~~~~~~- 354 (686)
...|....... ...+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23444332211 12455677777766532 221 2443 35666666443332
Q ss_pred ---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHH
Q 044251 355 ---NQL----EEAEGLFQEMKTKGLKPTSATFNILMDAYSR-------RMQPE-------IVEKLLLELQDMGLEPNAKS 413 (686)
Q Consensus 355 ---g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~ 413 (686)
++. +.|..+|++.+.... -+...|..++..+.+ .|+++ +|..+|++..+.-...+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 478889999887633 367788888888775 68876 89999999886222335788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC-hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 044251 414 YTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT-SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDA- 491 (686)
Q Consensus 414 ~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 491 (686)
+..+...+.+.|+. +.|..+|+++.+..+. + ...|...+..+.+.|++++|..+|++..+.. +.+...|...+..
T Consensus 324 ~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKY-EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 88888888888777 8899999999986432 3 3589999999999999999999999998852 2233333333222
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCc
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL-QP--TLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~ 568 (686)
+...|+.+.|..+|+..++.. +.+..+|..++..+.+.|+.++|..+|+++...+. .| ....|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999999875 56789999999999999999999999999987642 22 255888888888899999
Q ss_pred cHHHHHHHHHHHC
Q 044251 569 SKLPQLLKEMATL 581 (686)
Q Consensus 569 ~~A~~l~~~m~~~ 581 (686)
+.+..+++++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-14 Score=161.00 Aligned_cols=410 Identities=14% Similarity=0.143 Sum_probs=311.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEP-SLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
...+++.....++.+...|.+.+|+++++++...+. +..+....+.++....+. +..+.....+++.. -+ .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---H
Confidence 356888889999999999999999999999995532 334456666666666555 44555555555432 11 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 239 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
.-+...+...|.+++|..+|++.. -.....+.++. ..++ +++|.++.++. -+..+|..+.+++.+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~n-ldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGN-LDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhh-HHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 447888999999999999999963 12223334433 4455 89999998865 257899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 319 EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 319 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
.|++++|...|.+. .|...|..++.++.+.|++++|.++|...++..- +....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999999664 3788999999999999999999999998877642 332333599999999998864444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 399 LLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
+ . .++...+..+...|...|.+ ++|..+|... ..|..++.+|++.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~Y-eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMY-DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 3 2 45666777777888888776 8899999985 37999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNML 558 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (686)
.+..+|..+..+|...|++..|....-. +..+...+..++..|.+.|.+++|+.+++..+... +-....|+-|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 3568899999999999999999887654 34566778899999999999999999999887665 4466788888
Q ss_pred HHHHHhc--CCccHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHHCC
Q 044251 559 MNAYGRG--GQTSKLPQLLKEMATLNIKP------DSVTYSTMIYAFVRVRDFKRAFFY-------------HKQMVKSG 617 (686)
Q Consensus 559 i~~~~~~--g~~~~A~~l~~~m~~~g~~p------d~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g 617 (686)
..+|++- ++..+++++|..-. +++| +...|..++-.|.+.|+++.|... |+..+.
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence 8888764 45666666666443 3333 467799999999999999999832 222221
Q ss_pred CCCCHHHHHHHHHHHH
Q 044251 618 QVPDVKSYEKLRSILD 633 (686)
Q Consensus 618 ~~p~~~~~~~l~~~l~ 633 (686)
-..+++.|-+++..+-
T Consensus 1397 kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYL 1412 (1630)
T ss_pred ccccHHHHHHHHHHHH
Confidence 2457788888888773
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-17 Score=167.75 Aligned_cols=309 Identities=11% Similarity=-0.014 Sum_probs=220.5
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 279 AMRKNGRSAKEAWE-FFEKMNRKGVK---LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS 354 (686)
Q Consensus 279 ~~~~~g~~~~~a~~-~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 354 (686)
.+...|+ +++|.+ .|++....... .+...+..+...+.+.|++++|...++.+.+.. +.+..+|..+..+|.+.
T Consensus 34 ~~~~~~~-~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSD-YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT
T ss_pred hhHHHHH-HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3444555 777777 77765543211 124456777888888888888888888888774 44777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
|++++|+..|+++.+.... +..++..++.++...|++++|...++++.... |+.... +...+.. .
T Consensus 112 g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~------~~~~~~~-~----- 176 (368)
T 1fch_A 112 EQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHL------VTPAEEG-A----- 176 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGG------CC------------
T ss_pred cCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHH------HHHHHHH-h-----
Confidence 8888888888888776433 66778888888888888888888888887653 221110 0000000 0
Q ss_pred HHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 435 FLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
... . ....+..+...+ ..|++++|+..|+++....... +..++..+...+...|+++.|...++++++..
T Consensus 177 --~~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 177 --GGA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --hhh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 000 0 111222333344 8899999999999998853221 57889999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC--------
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-------- 585 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------- 585 (686)
+.+..++..+...|...|++++|...++++.+.. +.+..+|..++.+|.+.|++++|...|+++....-..
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 5678899999999999999999999999998775 4578899999999999999999999999988642111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 586 --DSVTYSTMIYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 586 --d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 614 (686)
...+|..+..+|...|++++|..++++.+
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 16889999999999999999999877443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=168.99 Aligned_cols=309 Identities=13% Similarity=0.038 Sum_probs=225.9
Q ss_pred HHHHcCCHHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 244 GLFWCGRYDDAWK-AYEAMEANNV-RP--DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 244 ~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.+...|++++|.+ .|++...... .| +...+..+...+...|+ +++|...|+++++... .+..++..+...+...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 5667789999998 8886654321 11 34567788889999998 9999999999999753 4788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLL 399 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (686)
|++++|...++.+.+.. +.+..++..+..+|...|++++|+..|+++...... +...+..+... ...
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~---- 178 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG---- 178 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh----
Confidence 99999999999999885 448899999999999999999999999999987433 22222211110 000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKP-TSHSYTALIHAYSVGGWHEKAYAAFENMLREEI 478 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 478 (686)
. .+. ..+. .+..+...|+. ++|...|+++....+.. +..++..+...|...|++++|+..|+++... .
T Consensus 179 ---~----~~~-~~~~-~~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~ 247 (368)
T 1fch_A 179 ---A----GLG-PSKR-ILGSLLSDSLF-LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-R 247 (368)
T ss_dssp ---------------C-TTHHHHHHHHH-HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred ---h----ccc-HHHH-HHHHHhhcccH-HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 0 000 0011 11111233344 77888888887765432 4678888999999999999999999998885 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--------
Q 044251 479 KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP-------- 550 (686)
Q Consensus 479 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------- 550 (686)
+.+..++..+...+...|++++|...++++++.. +.+..++..+..+|.+.|++++|...++++.+.....
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 4467889999999999999999999999998876 5678899999999999999999999999987654221
Q ss_pred --CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 551 --TLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 551 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
...+|..+..+|...|++++|..++++..
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 27899999999999999999998877443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-16 Score=161.89 Aligned_cols=277 Identities=10% Similarity=-0.030 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.... +..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34457788888888899999999998888874 347888888888888889999999998888876432 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHH
Q 044251 385 AYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHE 464 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (686)
+|...|++++|..+++++.+.. |+.... +. ..+ .....+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~------~~------~~~-------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYL------VK------NKK-------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHH------Hh------hhc-------------cchHHHHHHHHHHhhhhhHH
Confidence 8888888888888888887642 211000 00 000 12334556678889999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 465 KAYAAFENMLREEIK-PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 465 ~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
+|+.+|+++...... .+..++..+...+...|++++|...++++++.. +.+..+|+.+..+|...|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886322 167889999999999999999999999999876 667889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 544 GKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK-----------PDSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 544 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------pd~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
.+.. +.+..+|..+..+|.+.|++++|...|+++.+..-. .+..+|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8875 447899999999999999999999999999863211 1357889999999999999998887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=153.75 Aligned_cols=280 Identities=10% Similarity=-0.043 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDA 385 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 385 (686)
...+..+...+...|++++|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+.... +..++..+..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 3456677788889999999999999988874 347888888999999999999999999998876433 67788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHH--HHHhcCCH
Q 044251 386 YSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIH--AYSVGGWH 463 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 463 (686)
+...|++++|...++++.+..... ...+..+... .++......+.. .+...|++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQY-EQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-TTC-------------------------------------------CCTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999887753221 1111111000 011111112212 36778889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 464 EKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEF 543 (686)
Q Consensus 464 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 543 (686)
++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..+...|...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998763 4477888999999999999999999999998876 567888999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 544 GKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-----------DSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 544 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------d~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
.+.. +.+..+|..+..+|...|++++|.+.++++....-.. +..++..+..++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8775 4478899999999999999999999999998642111 367889999999999999999999875
Q ss_pred HH
Q 044251 613 MV 614 (686)
Q Consensus 613 m~ 614 (686)
.+
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=157.44 Aligned_cols=276 Identities=12% Similarity=0.010 Sum_probs=206.9
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 269 DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLI 348 (686)
Q Consensus 269 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 348 (686)
+...|..+...+...|+ +++|+++|+++++... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGD-LPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568888899999998 9999999999998754 478899999999999999999999999999874 44789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 044251 349 NAYCKSNQLEEAEGLFQEMKTKGLKPTSA-TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKM 427 (686)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 427 (686)
.+|...|++++|+..|+++.+.. |+.. .+..+. .....+..+...+...|+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhH
Confidence 99999999999999999998752 2211 111110 0112233333444445444
Q ss_pred HHHHHHHHHHHHHcCCC-CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIK-PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWK 506 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 506 (686)
++|..+|+++....+. .+..++..+...|...|++++|+..|+++.+. .+.+..++..+..+|...|++++|...++
T Consensus 194 -~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 -EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp -HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666665432 15667788888888889999999998888875 34467888888888999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCccHHHHHH
Q 044251 507 LMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-----------PTLMTYNMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 507 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~l~ 575 (686)
++++.. +.+..++..+..+|...|++++|...|+++.+.... .+..+|..|..++...|+.+.+..+.
T Consensus 272 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 272 RALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888775 556888888999999999999999999987754311 13578899999999999998887776
Q ss_pred HH
Q 044251 576 KE 577 (686)
Q Consensus 576 ~~ 577 (686)
++
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 54
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-14 Score=155.27 Aligned_cols=384 Identities=14% Similarity=0.047 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHhccc--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-
Q 044251 200 PRACSVLFPVLGRARMGDDLMVLFKNLPQ--------SKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N- 265 (686)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 265 (686)
...|+.++.++...|++++|++.|++..+ ...+....+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 35677777777777777777777765422 112245667777777888888888887777766431 0
Q ss_pred CCC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCC
Q 044251 266 VRP-DHVTCSIMITAMRKNGR-SAKEAWEFFEKMNRKGVKLSQEVVGALMKS---FCDEGLKNEALIIQMEMEKKGIPSN 340 (686)
Q Consensus 266 ~~p-~~~~~~~ll~~~~~~g~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~~ 340 (686)
..+ ...++..+..++...|+ .+++|++.|++.++..+. +...+..+... +...++.++|++.++...+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 011 23445544444444331 267788888877775432 44444444433 334566677777777776653 235
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044251 341 AIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTC 416 (686)
Q Consensus 341 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (686)
..++..+...+.. .|++++|.+++++....... +...+..+...+...|++++|...+.+..+.... +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 5566555555444 35667777777777665433 5566777777788888888888888777765321 3444444
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044251 417 LISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG 496 (686)
Q Consensus 417 ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 496 (686)
+...|... ... .... ............+..++|...+++..... +.+..++..+...+...|
T Consensus 287 lg~~y~~~------~~~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 287 IGCCYRAK------VFQ----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHH------HHH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHH------HHH----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 33333210 000 0000 00000001111223455666666655532 223344555666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 497 DTGMMMKIWKLMMSEKVEGTR--VTFNILLDG-FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 497 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
++++|+..|+++++....+.. .++..+... +...|+.++|+..|++.++.. |+....... ...+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH---------HHHHHH
Confidence 666666666666655422221 122222222 234567777777777766543 222211111 123344
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
++++....+ +.+..+|..++.+|...|++++|++.|+++++.|
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455544432 2356677777777777777777777777777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-14 Score=152.87 Aligned_cols=385 Identities=11% Similarity=0.008 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 044251 270 HVTCSIMITAMRKNGRSAKEAWEFFEKMNRK-----G---VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK-----G 336 (686)
Q Consensus 270 ~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g 336 (686)
...|+.|...+...|+ .++|++.|++.++. + ......+|+.+..+|...|++++|...++++.+. +
T Consensus 51 a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777777776 77777777766542 0 1123456666666677777777776666665432 0
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 337 --IPSNAIVYNTLINAYCKS--NQLEEAEGLFQEMKTKGLKPTSATFNILMDA---YSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 337 --~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
......++..+..++... +++++|+..|++..+.... +...+..+..+ +...++.++|++.+++..+... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 011344555554444443 3466677766666654322 33333333333 2234555566666666555421 1
Q ss_pred CHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044251 410 NAKSYTCLISAYGR----PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETY 485 (686)
Q Consensus 410 ~~~~~~~ll~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 485 (686)
+...+..+...+.. .+.. ++|..++++.....+. +..++..+...|...|++++|+..+++..+. .+.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~-~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEE-GEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCChHHHH
Confidence 33333333222221 1222 4566666665555433 4455566666666666666666666666553 22234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
..+..+|...+....+ .. ...........+..+.|...+++..... +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 4444443221110000 00 0000001112234678888888887765 44667788899999999
Q ss_pred CCccHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----h-hh
Q 044251 566 GQTSKLPQLLKEMATLNIKPDS--VTYSTMIY-AFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV----K-VA 637 (686)
Q Consensus 566 g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a----~-~~ 637 (686)
|++++|+..|+++.+....+.. ..+..+.. .+...|++++|+..++++++. .|+..........+.. . ..
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999875433321 12333333 345779999999999999874 4665444433333321 1 11
Q ss_pred hcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCcccc
Q 044251 638 TKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSHA 683 (686)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~~ 683 (686)
.++....-..++.+.. ..|+.++|++.|.++++.+|.+|+..
T Consensus 426 ~p~~~~~~~~LG~~~~----~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 426 NGADSEALHVLAFLQE----LNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp CC-CTTHHHHHHHHHH----HHHHCC--------------------
T ss_pred CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 1111112223444433 56789999999999999999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-15 Score=149.55 Aligned_cols=279 Identities=9% Similarity=0.020 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINA 350 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 350 (686)
..+..+...+...|+ +++|..+|+++++... .+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN-LAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 456677788889998 9999999999998754 378889999999999999999999999999874 4478899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hcCCCChH
Q 044251 351 YCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA--YGRPRKMS 428 (686)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~ 428 (686)
|...|++++|.+.|+++.+.... +...+..++.. .|+......+... +...|+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~- 154 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY- 154 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH-
Confidence 99999999999999999886432 22222222111 0111111122122 4444444
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
++|...++++.+..+. +...+..+...|...|++++|+..++++... .+.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7788888888877544 6788889999999999999999999999886 3446788999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP-----------TLMTYNMLMNAYGRGGQTSKLPQLLKE 577 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 577 (686)
++.. +.+..++..+...|...|++++|...++++.+..... +..+|..+..+|.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8876 5678899999999999999999999999988664221 478899999999999999999998875
Q ss_pred HH
Q 044251 578 MA 579 (686)
Q Consensus 578 m~ 579 (686)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-17 Score=176.07 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEK---KGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
-..||++||.+||+.|++++|.++|.+|.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456788888888888888888888877653 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC------hhhHhhhH
Q 044251 382 LMDAYSRRMQ-PEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT------SHSYTALI 454 (686)
Q Consensus 382 ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~li 454 (686)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+ +.+++..+++ ..+..|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR-----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH-----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH-----HHHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 8888888887 47788888888888888888888888754433 2233333333 2233333 44555566
Q ss_pred HHHHhcC
Q 044251 455 HAYSVGG 461 (686)
Q Consensus 455 ~~~~~~g 461 (686)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-15 Score=145.67 Aligned_cols=259 Identities=13% Similarity=0.038 Sum_probs=195.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
++.....|+++.|+..++.+....|.. .......++++|...|+++.|+..++.. .+++..++..++..+...|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~-~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPER-DVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchh-hHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 677788999999999887765443322 1234566788899999999998877653 23677888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPD-HVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
.++|++.++++...+..|+ ...+..+..++...|+ +++|++.+++ +.+..++..++..+.+.|++++|.+.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~-~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN-PDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC-HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC-HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999887765454 4555666678888888 9999999887 457788888999999999999999999
Q ss_pred HHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044251 330 MEMEKKGIPSNAIVY--NTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGL 407 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 407 (686)
+.+.+.... +.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+...
T Consensus 154 ~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 154 KKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999887422 22111 223344445588999999999988873 34777888899999999999999999999887642
Q ss_pred CCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC
Q 044251 408 EPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIK 444 (686)
Q Consensus 408 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~ 444 (686)
-+..++..++..+...|+..+.+.++++++.+..+.
T Consensus 232 -~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 232 -GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp -TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 267777777777777777755567888888776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-15 Score=145.47 Aligned_cols=131 Identities=13% Similarity=0.039 Sum_probs=61.3
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETY---TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNI 522 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 522 (686)
+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++++.. +.+..+++.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 33444445555555555555555555555432 222111 111122222345555555555555442 344555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSK-LPQLLKEMAT 580 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 580 (686)
+..++.+.|++++|...+++++... +-+..++..++..+...|+.++ +.++++++.+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555555555555555555554443 2245555555555555555543 3445555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-12 Score=147.93 Aligned_cols=345 Identities=14% Similarity=0.104 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
..++.++...++. +..+..++...... .....++.++...|.+++|..+|++... .....+.++
T Consensus 1023 ~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi-- 1086 (1630)
T 1xi4_A 1023 NLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI-- 1086 (1630)
T ss_pred HHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH--
Confidence 4444455555555 23444444333331 1234467778888888888888888532 222223332
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNE 324 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (686)
-..|++++|.++.++. -+..+|..+..++...|+ +++|.+.|.+. -|...|..++..|.+.|++++
T Consensus 1087 -e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~-~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1087 -EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM-VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred -HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC-HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHH
Confidence 2677888888887754 235678888888888888 88888888654 367778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 325 ALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 325 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
|.+.+....+... +....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 8888887776642 3333345888888888887543332 2 235566777888888888888888888874
Q ss_pred cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044251 405 MGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIET 484 (686)
Q Consensus 405 ~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 484 (686)
..|..+...|.+.|+. +.|.+.+++.. +..+|..+..+|...|++..|...... +..+...
T Consensus 1222 -------~ny~rLA~tLvkLge~-q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~de 1282 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEY-QAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 1282 (1630)
T ss_pred -------hHHHHHHHHHHHhCCH-HHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHH
Confidence 3778888888888776 77888887662 667888888888888888888776653 2335566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCC------CHHHHH
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK--QGQYLEARDVVSEFGKIGLQP------TLMTYN 556 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~ 556 (686)
+..++..|.+.|.+++|+.+++..+... +-....|+-+...|++ -+++.++.++|..-. .+++ +...|.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHH
Confidence 7788888888888888888888877665 5556677666666665 445666666666422 2222 566788
Q ss_pred HHHHHHHhcCCccHHH
Q 044251 557 MLMNAYGRGGQTSKLP 572 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~ 572 (686)
-++..|.+.|+++.|.
T Consensus 1360 elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHhcccHHHHH
Confidence 8888888888888887
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-15 Score=152.54 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=106.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAW 255 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 255 (686)
+.|++++|.++++.+-. +.+|..++.++.+.|++++|+..|.+. +|...|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 45668888888888821 257888888888888888888888653 56668888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044251 256 KAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK 335 (686)
Q Consensus 256 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (686)
..++..++. .+++.+.+.++.+|.+.|+ ++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~-l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNR-LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------------C-HHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCC-HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 877766654 4556778888888888887 777777764 256678888888888888888888888865
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044251 336 GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYT 415 (686)
Q Consensus 336 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (686)
..|..|+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 35788888888888888888888877 1678888888888888888888554433 223334444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHH
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE-EIKP------SIETYTAL 488 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p------~~~~~~~l 488 (686)
.++..|.+.|.+ ++|..+++...... ......|+-+.-+|++-. +++..+.++..... +++| +...|.-+
T Consensus 212 ~lv~~Yek~G~~-eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYF-EELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 566667777665 66777777666544 224555666655555542 33333332222111 1111 23345555
Q ss_pred HHHHHHcCCHHHHHH
Q 044251 489 LDAFRRSGDTGMMMK 503 (686)
Q Consensus 489 l~~~~~~g~~~~a~~ 503 (686)
.-.|...++++.|..
T Consensus 289 ~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 289 VFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHhhchHHHHHH
Confidence 555556666665554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=157.46 Aligned_cols=284 Identities=12% Similarity=0.105 Sum_probs=132.3
Q ss_pred HccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 044251 211 GRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEA 290 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a 290 (686)
-+.|++++|.+.++++.. | .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+ +++|
T Consensus 14 ~~~~~ld~A~~fae~~~~----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~-~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN-WEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCC-HHHH
Confidence 467889999999999844 3 4899999999999999999999965 3577799999999999998 9999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 291 WEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 291 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
..+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777764 3457889999999999999999998884 257789999999999999999999999977
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhH
Q 044251 371 GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY 450 (686)
Q Consensus 371 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 450 (686)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|++ +.|......+. .+..-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef-~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF-RLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH-HHHHHTTTTTT-----TCHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcH-HHHHHHHHHHH-----hCHhhH
Confidence 36899999999999999999999988 2789999999999999887 77865554422 234445
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCC------CHHHHHH
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS--GDTGMMMKIWKLMMSEKVEG------TRVTFNI 522 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~ 522 (686)
..++..|.+.|++++|+.+++..+... +--...|+-+..+|++- +++.+.++.|..- .++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 568899999999999999999988653 44557777777777654 3344444444321 23333 4557889
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 044251 523 LLDGFAKQGQYLEARDVV 540 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~ 540 (686)
++..|...++++.|...+
T Consensus 288 ~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHH
Confidence 999999999999887744
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=172.81 Aligned_cols=118 Identities=11% Similarity=0.138 Sum_probs=66.5
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLR---EEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNIL 523 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 523 (686)
..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655432 345555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 524 LDGFAKQGQ-YLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 524 i~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 555555554 34555555555555555555555555544433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=134.17 Aligned_cols=232 Identities=13% Similarity=0.038 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 341 AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISA 420 (686)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 420 (686)
...|..+...+...|++++|+..|+++.+.. .+...|..+..++...|++++|...+.++.+......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 4567777777888888888888888777765 5667777777777788888877777777654210000
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGM 500 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 500 (686)
... . ....+|..+...|...|++++|+..|+++... .|+. ..+...|+++.
T Consensus 73 ----~~~-~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 73 ----ADY-K---------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp ----CCH-H---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHH
T ss_pred ----cch-H---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHH
Confidence 000 0 01456777778888888888888888888874 4443 34566778888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 501 MMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 501 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
|...++.+.... +.+..++..+...+...|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++.+
T Consensus 124 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999988888765 4567788888889999999999999999988776 44788899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 581 LNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 581 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.. +.+..++..+..++...|++++|...++++++.
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 53 335888899999999999999999999998864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-13 Score=129.88 Aligned_cols=225 Identities=13% Similarity=-0.007 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK--PT----SATF 379 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~ 379 (686)
...+..+...+...|++++|...|+.+.+.. .+..+|..+..+|...|++++|+..|++..+.... ++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999999987 68899999999999999999999999998875321 22 5688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh
Q 044251 380 NILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV 459 (686)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (686)
..+..++...|++++|...++++.+. .|+... +..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~-------------------------------------------~~~ 117 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTADI-------------------------------------------LTK 117 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH-------------------------------------------HHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CchhHH-------------------------------------------HHH
Confidence 88999999999999999999988774 344222 233
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 460 GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDV 539 (686)
Q Consensus 460 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 539 (686)
.|++++|...++++... .+.+...+..+...+...|++++|...++++++.. +.+..++..+...|...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444555555544442 11123444555555555555555555555555544 33455666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 540 VSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
++++.+.. +.+..+|..+..+|.+.|++++|...++++.+
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66665544 33566666666666666666666666666654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=145.57 Aligned_cols=348 Identities=11% Similarity=-0.002 Sum_probs=148.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCCh---hHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMG---DDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+...+.+.|++++|+++|+.+.+.+ ++.++..+..+|...|+. ++|+..|++.... ++..+..|...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 34555666666777777766665542 123444555555555555 5555555555431 333444444433
Q ss_pred HHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 246 FWCG-----RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 246 ~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 320 (686)
...| ++++|+..|++..+.| .++ .+..|...|...++ ...
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~-~~~------------------------------- 124 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPH-SFP------------------------------- 124 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGG-GCT-------------------------------
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCC-CCC-------------------------------
Confidence 3333 4445555555554433 111 23333333332221 100
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM---QPEIVEK 397 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~ 397 (686)
-..+.+.+......| +...+..|...|...+.++++......+.+.-...+...+..|..+|...| +.++|.+
T Consensus 125 -~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 125 -NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp -TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 012333333333333 233444555555555533333332222211101112225555666666666 6666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHcCCCCChhhHhhhHHH-H--HhcCCHHHHHHHH
Q 044251 398 LLLELQDMGLEPNAKSYTCLISAYGRP----RKMSDMAADAFLRMKRVGIKPTSHSYTALIHA-Y--SVGGWHEKAYAAF 470 (686)
Q Consensus 398 ~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~ 470 (686)
+|++..+.|. ++...+..+-..|... ++. ++|..+|+... . -+...+..+... | ...+++++|+..|
T Consensus 201 ~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~-~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 201 QMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE-KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH-HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 6666665552 2333333333333221 233 55666666655 2 244455555554 3 3456666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 044251 471 ENMLREEIKPSIETYTALLDAFRRSG-----DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVS 541 (686)
Q Consensus 471 ~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 541 (686)
++..+.| +...+..+...|. .| ++++|...|++.. +.+...+..|...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 6666544 4445555555554 33 5556666555554 2244444445444443 225555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHH
Q 044251 542 EFGKIGLQPTLMTYNMLMNAYGR----GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 542 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 580 (686)
+..+.| +......|...|.. ..+.++|..+|+...+
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 555444 22233344444432 2244444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=129.03 Aligned_cols=207 Identities=14% Similarity=0.026 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...+..+...+.+.|++++|+..|+.++...|.. +..+..++.++.+.|++++|+..|++..... +.+..++..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555555666666666666666666554432 3555555555555666666665555554422 244555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
++.+.+. . ... .....|+ +++|+..|++.++..+. +...+..+...+...|+++
T Consensus 82 ~~~~~~~------------~---~~~---------~~~~~g~-~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALYR------------Q---AED---------RERGKGY-LEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHH------------T---CSS---------HHHHHHH-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhh------------h---hhh---------hcccccC-HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 5555500 0 000 0000044 45555555554443321 3444444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
+|...|++..+.. .+...+..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555443 34555555555555555555555555555443222 3344444555555555555555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=144.22 Aligned_cols=319 Identities=13% Similarity=0.035 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC-----ChhHHHHHHHhcccCCCCCCHH
Q 044251 165 RECVQLLELMANDGLL---GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR-----MGDDLMVLFKNLPQSKEFRDAH 236 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~---~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~ 236 (686)
..+..+...+...|++ ++|+..|+.+... ++.++..+..++...| ++++|+..|++....+. ..
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~ 107 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GN 107 (452)
T ss_dssp TGGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SS
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HH
Confidence 4444555556667777 8999999999865 3467888888665555 67899999999887554 33
Q ss_pred HHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDD---AWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
.+..|...|...+..++ +.+.+......| +...+..+...+...+. ++.+......+.+.-...++..+..|.
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~-~~~~~~~a~~~~~~a~~~~~~a~~~Lg 183 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT-YDQHLDDVERICKAALNTTDICYVELA 183 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC-GGGGHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC-cccCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77788888887765544 344444444333 22344444444544442 222222211111111111222444444
Q ss_pred HHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 044251 314 KSFCDEG---LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS----NQLEEAEGLFQEMKTKGLKPTSATFNILMDA- 385 (686)
Q Consensus 314 ~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~- 385 (686)
..|...| +.++|+..|+...+.|.. +...+..|...|... +++++|+.+|+... .| +...+..|...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHH
Confidence 5555555 555555555555554422 333333344444332 34555555555444 21 22333333333
Q ss_pred H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcC--
Q 044251 386 Y--SRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG-- 461 (686)
Q Consensus 386 ~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 461 (686)
+ ...+++ ++|..+|++..+.| +...+..|...|. .|
T Consensus 259 ~~~~~~~d~------------------------------------~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 259 YDFPELGDV------------------------------------EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHSGGGCCH------------------------------------HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred HhCCCCCCH------------------------------------HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 2 223444 44555555554443 3444444444444 33
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----c
Q 044251 462 ---WHEKAYAAFENMLREEIKPSIETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----Q 530 (686)
Q Consensus 462 ---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 530 (686)
++++|+..|++.. .-+...+..+...|.. ..+.++|...|++..+.|. ......|..+|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 5666666666554 2244455555555444 2366677777776666552 2234444545543 3
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044251 531 GQYLEARDVVSEFGKIG 547 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~ 547 (686)
.+..+|...|+...+.|
T Consensus 372 ~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 46777777777766655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-13 Score=126.68 Aligned_cols=200 Identities=16% Similarity=0.036 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+ +++|+..|+++++..+. +...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 445566666666666666666666666666543 3345556666666666666 66666666666665422 45566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 313 MKSFCDE-----------GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 313 i~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
...+... |++++|...++...+..+ .+...|..+..+|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 999999999999998743 478899999999999999999999999999887 58889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKR 440 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~ 440 (686)
+..++...|++++|...|++..+... .+...+..+...+...|+. ++|...|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKA-EEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCH-HHHHHHHHHHhh
Confidence 99999999999999999999988642 3677788888889998887 889999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=126.44 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 044251 344 YNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGR 423 (686)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 423 (686)
+......+...|++++|+..|+++.+.... +...+..+..++...|++++|...++++.+.+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------- 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK------------- 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh-------------
Confidence 334455555566666666666665554322 233455555555555565555555555544211100
Q ss_pred CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 424 PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMK 503 (686)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 503 (686)
.....|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|..
T Consensus 72 ---------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 72 ---------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 022345666777777777888888877777642 3355677788888888888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHH
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMAT 580 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~ 580 (686)
.++++++.. +.+..++..+...+...+++++|...++++.+.. +.+...+..+..++...|+ +++|...++++.+
T Consensus 130 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 130 YMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 888887764 5567777777734444569999999999988765 4467888888888888888 8889999888875
Q ss_pred CC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 581 LN-IKPD------SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 581 ~g-~~pd------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
.. -.|+ ..+|..+...|...|++++|+++++++++.. |+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~ 255 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--PTNK 255 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--ccHH
Confidence 31 1133 2577888889999999999999999998754 5543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-11 Score=119.70 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044251 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSYT 415 (686)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (686)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666666777777777777777666632 34455556666666 666666666665554432
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSV----GGWHEKAYAAFENMLREEIKPSIETYTALLDA 491 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 491 (686)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 73 ------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 73 ------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI 119 (273)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH
Confidence 33344444455555 666666666666666543 45556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 492 FRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 492 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 666 666666666666666654 44556666666666 677777777777766653 4566667777777
Q ss_pred h----cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044251 564 R----GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR----VRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 564 ~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 617 (686)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|+++++++.+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7 777777777777777643 25566677777777 777777777777777665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-11 Score=118.64 Aligned_cols=224 Identities=10% Similarity=-0.027 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHhcccCCCCCCHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR----ARMGDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
....+..+...+...|++++|++.|+.+... .++.++..++.++.. .+++++|+..|++.... .+..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---NYSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---CCHHHH
Confidence 3455666677777777777777777777762 234666667777777 77777777777776654 256677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044251 239 NAAISGLFW----CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK----NGRSAKEAWEFFEKMNRKGVKLSQEVVG 310 (686)
Q Consensus 239 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~~~~~~~~~~~ 310 (686)
..+...|.. .+++++|++.|++..+.+ +..++..+...+.. .++ +++|+.+|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD-FKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-HHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC-HHHHHHHHHHHHhcC---cHHHHH
Confidence 777777777 777777777777776653 55666666666666 665 777777777777654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 311 ALMKSFCD----EGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNIL 382 (686)
Q Consensus 311 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 382 (686)
.+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66666666 677777777777766654 45666666667766 677777777777766653 24455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 044251 383 MDAYSR----RMQPEIVEKLLLELQDMG 406 (686)
Q Consensus 383 l~~~~~----~~~~~~a~~~~~~m~~~~ 406 (686)
..+|.. .+++++|.++|++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666 666777777776666553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-12 Score=122.09 Aligned_cols=206 Identities=10% Similarity=-0.010 Sum_probs=157.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044251 413 SYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF 492 (686)
Q Consensus 413 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 492 (686)
.+..+...+...|+. ++|...|+++....+. +...+..+...|...|++++|+..++++.+.. +.+...+..+...+
T Consensus 39 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNT-EQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344444455555555 5566666666655432 56677788888888888999998888887753 34677888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH
Q 044251 493 RRSGDTGMMMKIWKLMMSEKV-EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 571 (686)
...|++++|..+++++.+.+. +.+..++..+...|...|++++|...++++.+.. +.+...+..++..|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999998887322 3356778888888999999999999999988765 44788888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 572 PQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 625 (686)
..+++++.+.. +.+...+..+...+...|++++|.++++++++.. |+...+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 99999988642 3467788888888999999999999999998754 554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-12 Score=124.69 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCC--CCHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEF--RDAHVYNAA 241 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 241 (686)
.+.....+..+...|++++|+..|+.+....|... ..+..++.++...|++++|+..|++....... ....+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP--YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS--TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 44566778889999999999999999999877654 67888889999999999999999988763211 234568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL 321 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 321 (686)
...+...|++++|++.|++..+.. +.+...|..+...+...|+ +++|++.|+++++.. +.+..++..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999987763 3456788888899999998 999999999998773 3366777777734555569
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCC
Q 044251 322 KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQ---LEEAEGLFQEMKTKG-LKPT------SATFNILMDAYSRRMQ 391 (686)
Q Consensus 322 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~~~ 391 (686)
+++|...++.+.+.. +.+...+..+..++...|+ +++|...|++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999998874 3367888888888888888 888888888876541 1122 2467778888889999
Q ss_pred HHHHHHHHHHHHHcC
Q 044251 392 PEIVEKLLLELQDMG 406 (686)
Q Consensus 392 ~~~a~~~~~~m~~~~ 406 (686)
+++|...++++.+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-12 Score=120.85 Aligned_cols=200 Identities=17% Similarity=0.029 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
...+..++..+...|++++|+..|+.+....|.. ...+..++.++...|++++|+..|+++.... +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 4445555566666666666666666666554322 3455555555555555555555555544322 134455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
.+...|++++|++.|+++...+..| +...+..+...+...|+ +++|.+.++++.+... .+..++..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCH
Confidence 5555555555555555554421123 22334444444444444 4555555544444321 1334444444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKT 369 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (686)
++|...++.+.+.. +.+...+..+...+.+.|++++|.++++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444331 22333444444444444444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-12 Score=131.15 Aligned_cols=234 Identities=9% Similarity=0.060 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC-hhHHHHHHHhcccCCCCCCHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM-GDDLMVLFKNLPQSKEFRDAHVYNAA 241 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 241 (686)
..+.+..+...+...|++++|+..|+.++...|.. ..+|..++.++.+.|+ +++|+..|+++....+ .+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 45677788888999999999999999999988755 4889999999999997 9999999999887443 689999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 044251 242 ISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD-EG 320 (686)
Q Consensus 242 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g 320 (686)
..++...|++++|+..|+++.+.. +-+..+|..+..++...|+ +++|++.|+++++.... +...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4567889999999999998 89999999999987654 78889999999988 66
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 044251 321 LKNEA-----LIIQMEMEKKGIPSNAIVYNTLINAYCKSN--QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM--- 390 (686)
Q Consensus 321 ~~~~A-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--- 390 (686)
..++| +..++..+... +-+...|+.+..++...| ++++|++.++++ +.. ..+...+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65777 47888888774 347888999998888888 689999999887 432 336677888888888764
Q ss_pred ------CHHHHHHHHHHH-HHc
Q 044251 391 ------QPEIVEKLLLEL-QDM 405 (686)
Q Consensus 391 ------~~~~a~~~~~~m-~~~ 405 (686)
..++|.++|+++ .+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHh
Confidence 258888888887 543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=125.93 Aligned_cols=204 Identities=12% Similarity=0.042 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
..++...+..+...+...|++++|+..|+.+....|.. ...+..++.++...|++++|+..|+++.... +.+..++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED--AIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 33455555566666666777777777777776654432 4566666666666666666666666655432 24556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 240 AAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 240 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.+...+...|++++|++.|+++.+.. +.+...+..+...+...|+ +++|.+.++++.+... .+...+..+...+...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNE-NDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHc
Confidence 66666666666666666666665542 2344555555555666665 6666666666655432 2445555555555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666555555542 224555555555555555555555555555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-11 Score=115.13 Aligned_cols=200 Identities=10% Similarity=-0.036 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..+..++..+...|++++|+..|+++.... +.+..++..+...+...|++++|.+.|+++.... +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444445555555555554444321 1344455555555555555555555555554432 22344455555555
Q ss_pred HHc-CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 044251 281 RKN-GRSAKEAWEFFEKMNRKGVKLS-QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE 358 (686)
Q Consensus 281 ~~~-g~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 358 (686)
... |+ +++|...++++++.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 87 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNR-PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCC-HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCc-HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 555 54 5555555555554211122 3445555555555555555555555555542 224555555566666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 359 EAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 359 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
+|..+|+++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666555543212444455555555556666666655555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=128.46 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
.+..++.++...|++++|...|+++.+... .+...+..+...+...|+. ++|...|+++.+..+. +...+..+..+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF-DAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 334444444444444444444444443321 1233344444444444333 4444444444443322 455666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEAR 537 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 537 (686)
...|++++|...|+++.+. .|+.......+..+...|+++.|...+....... +++...+. ++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHH
Confidence 7777777777777777764 3443333344444556677777777777766654 33333333 555566667777777
Q ss_pred HHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 538 DVVSEFGKIGLQ---PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYH 610 (686)
Q Consensus 538 ~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 610 (686)
..++++...... .+..+|..++.+|.+.|++++|...|+++... .|+. +.....++...|++++|++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 777776543211 01466777788888888888888888888754 4432 223345666777777777665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=127.11 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
.+..+|+.+..++.+.|++++|++.|+++.... +-+..+|+.+..++...|+++++|+..|+++++.... +..+|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 357788999999999999999999999998763 3457788888888888885489999999999987644 77888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSR-RMQ 391 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~ 391 (686)
..++...|++++|+..|+.+++... -+..+|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 8888888999999999988888743 37888888888888888999999988888887554 67788888888877 454
Q ss_pred HHHH
Q 044251 392 PEIV 395 (686)
Q Consensus 392 ~~~a 395 (686)
.++|
T Consensus 251 ~~eA 254 (382)
T 2h6f_A 251 NDRA 254 (382)
T ss_dssp CSHH
T ss_pred chHH
Confidence 3555
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-12 Score=122.29 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=144.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044251 412 KSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDA 491 (686)
Q Consensus 412 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 491 (686)
..+..+...+...|+. +.|..+|+++.+..+. +...+..+...|...|++++|+..++++... .+.+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDY-EKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHHH
Confidence 3344444445555554 5566666666654332 5667777778888888888888888888775 23466778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 571 (686)
+...|+++.|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++..|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888765 5567788888888888999999999998887765 44788888888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 572 PQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
...++++.... +.+..++..+..++...|++++|..+++++++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999888752 3357788888889999999999999999988754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=116.19 Aligned_cols=203 Identities=13% Similarity=0.004 Sum_probs=129.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRS 495 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 495 (686)
.+...+...|+. ++|...|+.+.+..+. +...+..+...|...|++++|...++++... .+.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 13 QLAMEYMRGQDY-RQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhH-HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHh
Confidence 333334444333 4444444444443322 3445666666677777777777777776664 233556666777777777
Q ss_pred -CCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 496 -GDTGMMMKIWKLMMSEKV-EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 496 -g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
|+++.|...++.+++.+. +.+..++..+...+...|++++|...++++.+.. +.+...+..++.+|.+.|++++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776221 2235667777777777788888888877777654 3357777777788888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 574 LLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 574 l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
+++++.......+...+..+...+...|+.+.|..+++.+.+.. |+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~ 217 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEE 217 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHH
Confidence 88877764311356666666677777888888888877776533 54443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.9e-10 Score=121.23 Aligned_cols=444 Identities=11% Similarity=-0.012 Sum_probs=286.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR---YDDAWK 256 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 256 (686)
..+.+..|+..+...|. +...|..++..+.+.+.++.+..+|+++.. ..+.....|...+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~-~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHD-RFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34556666777666663 457888888888888888888888888776 355677788888888777777 888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH--------
Q 044251 257 AYEAMEANN-VRPDHVTCSIMITAMRKNGRS-------AKEAWEFFEKMNR-KGV-KL-SQEVVGALMKSFC-------- 317 (686)
Q Consensus 257 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~m~~-~~~-~~-~~~~~~~li~~~~-------- 317 (686)
+|++..... ..|++..|...+.-..+.+.. .+...++|+.++. .|. .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888887652 137777777776655443321 1334466766654 354 33 3567777665543
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHC--CCC--------
Q 044251 318 -DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK-------------SNQLEEAEGLFQEMKTK--GLK-------- 373 (686)
Q Consensus 318 -~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--g~~-------- 373 (686)
..++++.+..+|+.++..-...-..+|......-.. ..+++.|...+.++... ++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 234567777888877753111112333222211111 12344555555554321 111
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 374 -------P-----T---SATFNILMDAYSRRM-------QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 374 -------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
| + ...|...+..-...+ ..+.+..+|++++..- .-....|......+...|+. +.|
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~-~~a 362 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTD-STV 362 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCC-TTH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcH-HHH
Confidence 1 1 134444444332222 1344566788776652 23566666666655555555 567
Q ss_pred H-HHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHH
Q 044251 432 A-DAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREE---------IKPS------------IETYTALL 489 (686)
Q Consensus 432 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll 489 (686)
. .+|++.....+ .+...|...+....+.|++++|..+|++++... ..|+ ..+|...+
T Consensus 363 ~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 5 99998887543 366677888888899999999999999987641 0132 24677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ-GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 568 (686)
....+.|+.+.|..+|..+++........+|...+..-.+. ++.+.|..+|+..++. ++.+...|...+......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88888899999999999998762123334444444333444 4589999999998876 355777888888888889999
Q ss_pred cHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 569 SKLPQLLKEMATLNIKP--DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
+.|..+|++.......+ ....|..++.--.+.|+.+.+..+.+++.+.- |+......+.+-+
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 99999999998753222 24577788877788999999999999999864 5554444454444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=134.61 Aligned_cols=278 Identities=12% Similarity=0.060 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA----IVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP-TSA 377 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ 377 (686)
..+..+...+...|++++|...|+.+.+.+.. +. .+|..+...|...|++++|+..|++..+. +..+ ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556667788888888888888888876433 33 46777888888888888888888877653 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
.+..+..+|...|++++|...+++..+... ..++. .....++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~----------------~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR---------------QLGDR----------------LSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTCH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------Hhhch----------------HHHHHHHHHHHHHH
Confidence 667777778888888888888777653200 00000 01233555666667
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 044251 458 SVGGW-----------------HEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE- 514 (686)
Q Consensus 458 ~~~g~-----------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 514 (686)
...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++.++....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 77777 77777777765442 1111 2256777788888899999999888888764211
Q ss_pred C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----
Q 044251 515 G----TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-----PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL---- 581 (686)
Q Consensus 515 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 581 (686)
. ...++..+...|...|++++|...++++...... ....++..+..+|...|++++|..+++++...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 1 1337788888999999999999999987643211 12567888999999999999999999988753
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 582 NIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 582 g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+..+ ...++..+..+|...|++++|..+++++++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2457888999999999999999999999875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-12 Score=122.62 Aligned_cols=196 Identities=11% Similarity=-0.045 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
+|..+...+...|+ +++|...|+++++... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 45 ~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGL-RALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 34444444444444 4444444444444321 134444445555555555555555555554442 22345555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.+.|++++|...|+++.+.. |+......++..+...|++++|...+........ ++...+. ++..+...++. +.|
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~a 196 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWN-IVEFYLGNISE-QTL 196 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHHH-HHHHHTTSSCH-HHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHHH-HHHHHHHhcCH-HHH
Confidence 55555555555555555432 2222222233333444555555555544443321 1212222 33333333333 344
Q ss_pred HHHHHHHHHcCCC---CChhhHhhhHHHHHhcCCHHHHHHHHHHHHH
Q 044251 432 ADAFLRMKRVGIK---PTSHSYTALIHAYSVGGWHEKAYAAFENMLR 475 (686)
Q Consensus 432 ~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 475 (686)
...+......... .+...+..+..+|...|++++|...|+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444322110 0134555566666666666666666666655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-12 Score=130.62 Aligned_cols=299 Identities=13% Similarity=0.072 Sum_probs=199.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 044251 304 LSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP- 374 (686)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 374 (686)
.....+......+...|++++|...|+.+.+.+.. + ..++..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34556666777777888888888888887776332 3 356777777788888888888888776442 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhH
Q 044251 375 TSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALI 454 (686)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 454 (686)
...++..+..++...|++++|...+.+..+.... .++. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~----------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE---------------LNDK----------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HTCH----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------cccc----------------cchHHHHHHHH
Confidence 1335666777777777777777777766432100 0000 00133455666
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 455 HAYSVGGW--------------------HEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 455 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
..|...|+ +++|+..+++.... +..+ ...++..+...+...|+++.|...+++.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66667777 77777777766442 1111 13567778888888999999999988887
Q ss_pred hcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 510 SEKV-EG----TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 510 ~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
+... .+ ...++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5411 11 2347888888999999999999999987643211 11 5678889999999999999999999887
Q ss_pred HC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 044251 580 TL----NIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQ-VPD----VKSYEKLRSILDV 634 (686)
Q Consensus 580 ~~----g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~l~a 634 (686)
+. +-.+ ...++..+..+|...|++++|..+++++++... ..+ ..++..+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 53 1111 156788899999999999999999999875410 111 2455555555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-12 Score=131.87 Aligned_cols=305 Identities=13% Similarity=0.043 Sum_probs=219.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 044251 267 RPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP 338 (686)
Q Consensus 267 ~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~ 338 (686)
......+......+...|+ +++|..+|+++++.+.. + ..++..+...+...|++++|...++..... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGD-CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 4456677777888889998 99999999999987533 3 357888999999999999999999987543 211
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC--------------------H
Q 044251 339 -SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLK-PT----SATFNILMDAYSRRMQ--------------------P 392 (686)
Q Consensus 339 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~--------------------~ 392 (686)
....++..+...|...|++++|...+++..+.... .+ ..++..+..++...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 12567888999999999999999999998775211 12 3367777788888887 5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
++|...+.+..+ ++.... .......++..+...|...|++++|+..+++
T Consensus 164 ~~A~~~~~~al~-----------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLS-----------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------------------HHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555544322 111110 0001234677788888999999999999988
Q ss_pred HHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 473 MLREEI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-G----TRVTFNILLDGFAKQGQYLEARDVVSE 542 (686)
Q Consensus 473 m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 542 (686)
..+... .++ ..++..+...+...|++++|...+++.++.... . ...++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 765311 122 247788888899999999999999988754211 1 156788889999999999999999998
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHH
Q 044251 543 FGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKP-DSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 543 ~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~ 604 (686)
..+.... .+ ..++..+..+|...|++++|...+++..+. +..+ ...++..+...+...|+..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7643211 12 567888999999999999999999987743 2122 2456677777777777664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-11 Score=109.71 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=149.3
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..++...|+++.|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999998863 3467889999999999999999999999998876 567788888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 605 (686)
.+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|+++.+.. +-+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988776 4578999999999999999999999999999753 2368899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 044251 606 AFFYHKQMVKSG 617 (686)
Q Consensus 606 A~~~~~~m~~~g 617 (686)
|+..|+++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999998743
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-09 Score=116.57 Aligned_cols=429 Identities=9% Similarity=0.009 Sum_probs=295.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC---hhHHHHHHHhcccCCC-CCCH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM---GDDLMVLFKNLPQSKE-FRDA 235 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~ 235 (686)
++.+...+..++..+...+.++.|..+|+.++...|.. ...|..-+..-.+.|. ++.+..+|++...... ++++
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~--~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM--ANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 44588999999999999999999999999999987644 4888888888888888 9999999999887431 3789
Q ss_pred HHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHH---------HcCCCHHHHHHHHH
Q 044251 236 HVYNAAISGLFWCGRY--------DDAWKAYEAMEA-NNV-RPD-HVTCSIMITAMR---------KNGRSAKEAWEFFE 295 (686)
Q Consensus 236 ~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~---------~~g~~~~~a~~~~~ 295 (686)
..|..-+....+.++. +...++|+.... .|. .++ ...|...+.-.. ..++ .+.+..+|+
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~-~~~~R~iy~ 218 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR-VQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH-HHHHHHHHH
Confidence 9999988877776653 334578887654 466 554 567877776543 2333 678899999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--CC----C-----------C-----C
Q 044251 296 KMNRKGVKLSQEVVGALMKSFCD-------------EGLKNEALIIQMEMEKK--GI----P-----------S-----N 340 (686)
Q Consensus 296 ~m~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~~--g~----~-----------~-----~ 340 (686)
+++......-..+|......-.. ...++.|...+.++... ++ + | +
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 99864222223344322221111 11233444555443211 11 1 1 0
Q ss_pred ---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCC
Q 044251 341 ---AIVYNTLINAYCKSN-------QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVE-KLLLELQDMGLEP 409 (686)
Q Consensus 341 ---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~p 409 (686)
...|...+..--..+ ..+.+..+|++.+..- .-....|...+..+...|+.++|. .+|++.... +..
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 245666665433322 1345667888887763 337778888888888899998996 999999864 233
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCC---------CC------------ChhhHhhhHHHHHhcCCHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGI---------KP------------TSHSYTALIHAYSVGGWHEKAYA 468 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~A~~ 468 (686)
+...+...+...-+.|+. +.|..+|+.+..... .| ...+|...+....+.|..+.|..
T Consensus 377 s~~Lwl~~a~~ee~~~~~-e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKI-PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555566677777777775 889999999876420 12 13468888888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 469 AFENMLREEIKPSIETYTALLDAFRRS-GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 469 ~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
+|....+.........|...+..-.+. ++.+.|..+|+..++. .+.+...+...++.....|+.+.|..+|++.....
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998751112233343333322333 4589999999999987 46678888899998889999999999999988764
Q ss_pred CCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 548 LQP--TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAF 597 (686)
Q Consensus 548 ~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 597 (686)
..+ ....|...+..-.+.|+.+.+..+.+++.+. .|+......++.-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 322 3567888888888999999999999999975 45544444444433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.5e-12 Score=126.24 Aligned_cols=277 Identities=12% Similarity=0.061 Sum_probs=185.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 044251 308 VVGALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP-TSAT 378 (686)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 378 (686)
.+......+...|++++|...++++.+.... + ...+..+...|...|++++|...+++.... +..+ ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4445566777788888888888887776322 3 356677777788888888888888776542 1111 1335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH
Q 044251 379 FNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS 458 (686)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (686)
+..+..++...|++++|...+.+..+.... .++. .....++..+...|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~----------------~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE---------------LNDK----------------VGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------TTCH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH---------------hcCc----------------hHHHHHHHHHHHHHH
Confidence 666777777777777777777766432100 0000 001234555556666
Q ss_pred hcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 459 VGGW--------------------HEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 459 ~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
..|+ +++|...+++.... +..+ ...++..+...+...|+++.|...+++.++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 77777777665432 1111 134677777888888999998888888775411
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHC--
Q 044251 514 -----EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATL-- 581 (686)
Q Consensus 514 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 581 (686)
.....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 112347788888899999999999999887643211 12 567888899999999999999999988753
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 582 --NIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 582 --g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+-.+ ...++..+..+|...|++++|..+++++++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1457788899999999999999999999875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-12 Score=131.28 Aligned_cols=278 Identities=13% Similarity=0.046 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQ----EVVGALMKSFCDEGLKNEALIIQMEMEKK----G-IPSNA 341 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~ 341 (686)
..+..+...+...|+ +++|+.+|+++++.+.. +. .++..+...|...|++++|...+++..+. + .+...
T Consensus 49 ~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGD-CRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCc-HHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556667888898 99999999999987543 33 57888999999999999999999988654 1 12245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKP-TSATFNILMDAYSRRMQ-----------------PEIVEKLL 399 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~ 399 (686)
.++..+...|...|++++|...|++..+. +-.+ ...++..+..+|...|+ +++|..++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987654 1111 23467778888888888 55555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 044251 400 LELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI- 478 (686)
Q Consensus 400 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 478 (686)
.+..+ ++..... ......++..+...|...|++++|+..+++..+...
T Consensus 207 ~~al~-----------------------------~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLK-----------------------------LMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHH-----------------------------HHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------------------------HHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44322 1111100 001234677778888888888888888888765311
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 044251 479 KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-----GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL- 548 (686)
Q Consensus 479 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 548 (686)
..+ ..++..+...+...|++++|...+++.++.... ....++..+...|...|++++|...+++......
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 012 236777888888899999999998888765211 1256778888899999999999999998764311
Q ss_pred ----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 549 ----QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 549 ----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
.....++..+..+|...|++++|.++++++.+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112457888999999999999999999998863
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-10 Score=115.71 Aligned_cols=218 Identities=14% Similarity=0.016 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-------ccCCh-------hHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 181 GCCLYFYEWMRLQEPSLVSPRACSVLFPVLG-------RARMG-------DDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 181 ~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
++|+..|+.++...|.. +..|...+..+. +.|++ ++|+.+|++....-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~--~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 68889999999987644 588888888775 35886 899999999887323467889999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPD-HV-TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC-DEGLKN 323 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~ 323 (686)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|+ +++|..+|+++++.+. .+...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999885 554 33 78888888888888 9999999999998753 34555554444432 369999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG-LKP--TSATFNILMDAYSRRMQPEIVEKLLL 400 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 400 (686)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998873 4478899999999999999999999999998863 344 46688888888889999999999999
Q ss_pred HHHHc
Q 044251 401 ELQDM 405 (686)
Q Consensus 401 ~m~~~ 405 (686)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-10 Score=114.25 Aligned_cols=218 Identities=11% Similarity=-0.024 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-------CCCCh------HHHHHHHHHHHHH-cCCCCChhhHhhhHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYG-------RPRKM------SDMAADAFLRMKR-VGIKPTSHSYTALIHAYS 458 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~------~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 458 (686)
++|..+|+++.... .-+...|..+...+. ..|+. .++|..+|++... ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56777777776642 225556655555553 23443 2567777777766 3322 4556777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 044251 459 VGGWHEKAYAAFENMLREEIKPS-IE-TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA-KQGQYLE 535 (686)
Q Consensus 459 ~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 535 (686)
+.|++++|..+|+++++. .|+ .. .|..++..+.+.|+++.|..+|++.++.. +.+..+|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777763 333 23 66777777777777777777777777654 334444444333322 2577777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN-IKP--DSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 536 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++.... +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777776553 3366777777777777777777777777777642 344 355667777777777777777777777
Q ss_pred HHHC
Q 044251 613 MVKS 616 (686)
Q Consensus 613 m~~~ 616 (686)
+++.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=122.69 Aligned_cols=278 Identities=15% Similarity=0.064 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCH
Q 044251 271 VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS----QEVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP-SNA 341 (686)
Q Consensus 271 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~ 341 (686)
..+......+...|+ +++|..+|+++++.... + ..++..+...+...|++++|...++..... +.. ...
T Consensus 6 ~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGD-CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345555667788898 99999999999987533 3 367888999999999999999999987643 211 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 044251 342 IVYNTLINAYCKSNQLEEAEGLFQEMKTKGL-KPT----SATFNILMDAYSRRMQ--------------------PEIVE 396 (686)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~ 396 (686)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999998765311 112 2367777788888777 55555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
..+++... ++..... .......+..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~a~~-----------------------------~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 164 DLYEENLS-----------------------------LVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHH-----------------------------HHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------HHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55544321 1111100 0012346777788888899999999998887653
Q ss_pred CC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 477 EI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-G----TRVTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 477 ~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.. .++ ..++..+...+...|++++|...+++.++.... . ...++..+...|...|++++|...++++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 10 111 246778888889999999999999888754211 1 1557788888999999999999999987643
Q ss_pred CCC-C----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 547 GLQ-P----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 547 ~~~-p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
... . ...++..+...|.+.|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 1 1457788999999999999999999998864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-11 Score=122.77 Aligned_cols=167 Identities=11% Similarity=0.056 Sum_probs=129.2
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCC
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSE----KV-EGT 516 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~ 516 (686)
..+++.+..+|...|++++|+..|++..+... .++ ..++..+..+|...|+++.|...+++.++. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 35678888899999999999999988875311 112 247888889999999999999999998873 32 445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC-HH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD-SV 588 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~ 588 (686)
..++..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 778899999999999999999999987643 211123346778888889998 77777777765 33343 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.+..+...|...|++++|..+++++++.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999998753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-11 Score=128.65 Aligned_cols=216 Identities=11% Similarity=-0.063 Sum_probs=183.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 179 LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMG-DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 179 ~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+++|+..++......+ .+...+..++.++...|++ ++|+..|++..... +.+..+|..+..+|.+.|++++|++.
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888887776655 4568999999999999999 99999999987743 36789999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 044251 258 YEAMEANNVRPDHVTCSIMITAMRKN---------GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE--------G 320 (686)
Q Consensus 258 ~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g 320 (686)
|++..+. .|+...+..+...+... |+ +++|++.|+++++.... +...+..+..+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 9999987 57788888888888888 87 99999999999987543 688899999999998 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIP--SNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKL 398 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 398 (686)
++++|...|+...+.... .+...|..+..+|...|++++|++.|++..+.... +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987431 48899999999999999999999999999886443 566788888999999988888876
Q ss_pred HHHH
Q 044251 399 LLEL 402 (686)
Q Consensus 399 ~~~m 402 (686)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-10 Score=103.46 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 233 RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGAL 312 (686)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (686)
.++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...+...|+ +++|+..+..+...... +...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVLDTT-SAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 355566666666666666666666666665542 2345566666666666666 66666666666655322 45556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 313 MKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
...+...++++.|...+....... +.+...+..+..+|.+.|++++|++.|++..+.... +..+|..+..++.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 666666677777777666666653 335666666777777777777777777776665332 555666677777777777
Q ss_pred HHHHHHHHHHHHc
Q 044251 393 EIVEKLLLELQDM 405 (686)
Q Consensus 393 ~~a~~~~~~m~~~ 405 (686)
++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 7777777766653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=121.52 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044251 340 NAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-------GLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAK 412 (686)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 412 (686)
+..++..+...+...|++++|+.+|+++.+. ........+..+..++...|++++|..+++++.+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 4567788888888899999999888887763 122234567788888889999999998888775420
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 044251 413 SYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE------EIKP-SIETY 485 (686)
Q Consensus 413 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~ 485 (686)
.............++..+...|...|++++|+..++++.+. +..| ....+
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00000000012334555556666666666666666665543 1111 23455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCC-
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSE------K-VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG-------LQP- 550 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~p- 550 (686)
..+...+...|++++|..+++++++. + .+....++..+...|...|++++|...++++.+.. ..+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66666666677777777777666654 1 12234466677777777777777777777765421 111
Q ss_pred ------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 551 ------TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 551 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
....+..+...+...+.+.++...++..... .| +..++..+..+|.+.|++++|.++++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1222333444455667777788888777643 33 4677888999999999999999999998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-11 Score=125.00 Aligned_cols=213 Identities=11% Similarity=-0.019 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
+++...+....... ..+...+..+...+...|+..++|...|++..+..+. +...|..+..+|...|++++|+..|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444433321 2245555555555555544424566666666665433 566788888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 044251 473 MLREEIKPSIETYTALLDAFRRS---------GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ--------GQYLE 535 (686)
Q Consensus 473 m~~~~~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 535 (686)
..+. .|+...+..+..++... |++++|+..++++++.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8874 56677888888888888 88889999998888876 56778888888888888 88999
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQ--PTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQ 612 (686)
Q Consensus 536 A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~ 612 (686)
|...|+++.+.... .+...|..+..+|...|++++|.+.|+++.+. .| +...+..+..++...|++++|++.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998876521 47888999999999999999999999998874 44 577788888888888988888876544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-10 Score=116.99 Aligned_cols=130 Identities=10% Similarity=-0.032 Sum_probs=97.2
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLRE----EI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGTRV 518 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 518 (686)
.++..+..+|...|++++|+..+++..+. +. +....++..+...+...|+++.|...+++.++. +.+....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46777888888999999999998888762 22 334577888888899999999999998888764 2122233
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQ---YLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+..+...|...|+ +++|..++++. +..+ ....+..+...|...|++++|...++++.+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667778888888 77777777764 2222 345677889999999999999999998874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-10 Score=102.38 Aligned_cols=166 Identities=10% Similarity=0.045 Sum_probs=145.2
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG 526 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 526 (686)
...|..+...+...|++++|+..++++... .+.+...+..+...+...|+++.|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345677788899999999999999988765 34467888999999999999999999999999875 5678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 606 (686)
+...|++++|...++++.+.. +.+...+..++.+|...|++++|..+++++.... +.+..++..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998775 4588899999999999999999999999998753 34688999999999999999999
Q ss_pred HHHHHHHHHC
Q 044251 607 FFYHKQMVKS 616 (686)
Q Consensus 607 ~~~~~~m~~~ 616 (686)
..+++++++.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-11 Score=119.33 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-------NVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK------ 300 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~------ 300 (686)
+..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|+ +++|...++++++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhC
Confidence 4566777777777777777777777776552 112233456666666777776 77777777777653
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 044251 301 G-VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKK------GI-PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK-- 370 (686)
Q Consensus 301 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 370 (686)
+ ......++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|+++|+++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1223456777777888888888888888777654 11 223456777888888888888888888887664
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 371 ----GLKP-TSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 371 ----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
+..| ...++..+..++...|++++|..+++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234677788888888999888888888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-09 Score=108.98 Aligned_cols=274 Identities=9% Similarity=-0.039 Sum_probs=150.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHH
Q 044251 310 GALMKSFCDEGLKNEALIIQMEMEKKGIPSNAI----VYNTLINAYCKSNQLEEAEGLFQEMKTKGL-KPTS----ATFN 380 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~ 380 (686)
......+...|++++|...++.........+.. +++.+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777776666543222221 345555566666777777766666544210 0111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCC--C-ChhhHhhhHHHH
Q 044251 381 ILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIK--P-TSHSYTALIHAY 457 (686)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~~~~li~~~ 457 (686)
.+..++...|++++|...+++..+.. ...+.. | ....+..+...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLI--------------------------------NEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------------HHTTCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH--------------------------------HHhccccCcHHHHHHHHHHHHH
Confidence 45555666666666666665554310 000100 1 123444555666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHH----HHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIK----PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG--TRVTFN----ILLDGF 527 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~ 527 (686)
...|++++|...+++....... ....++..+...+...|++++|...+++.......+ ...... ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 6667777777777666543211 123455666666677777777777777665431111 111111 223345
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQP---TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPDS-VTYSTMIYAFVR 599 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~~~~~li~~~~~ 599 (686)
...|++++|...+++.......+ ....+..+...+...|++++|..+++++... |..++. .++..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 67777777777777765433211 1234566677777778888887777776532 211122 255666677777
Q ss_pred cCCHHHHHHHHHHHHH
Q 044251 600 VRDFKRAFFYHKQMVK 615 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~ 615 (686)
.|++++|...+++++.
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 8888888888777764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-10 Score=124.77 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=143.0
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+..+|+.|..+|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|+..|++.++.. +.+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46778889999999999999999999998852 3356888899999999999999999999999886 667889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFK 604 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~ 604 (686)
+|...|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.|+++++. .| +...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988876 447889999999999999999999999999874 56 4788899999999999999
Q ss_pred HHHHHHHHHHH
Q 044251 605 RAFFYHKQMVK 615 (686)
Q Consensus 605 ~A~~~~~~m~~ 615 (686)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-09 Score=102.72 Aligned_cols=200 Identities=11% Similarity=0.074 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
++..+......+...|+. ++|...|+...+..+.++...+..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 445555555556666555 6677777766666543455555556666667777777777776666531 12345566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTR-------VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQP--TLMTYNMLMN 560 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~ 560 (686)
.++...|++++|...+++.++.. +.+. .+|..+...+...|++++|...|+++.+.. +. +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 66666777777777777666654 3333 345566666666677777777776666543 22 2455666666
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+|...|+ .+++++...+ ..+...|.... ....+.+++|+.+++++++.. |+..
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~ 214 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCH
Confidence 6654432 3344444332 22333333332 233455689999999998754 5543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-09 Score=96.38 Aligned_cols=164 Identities=13% Similarity=0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..+..++..+...|++++|+..|+++.... +.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445556666777777777777777766532 2566777777777777777777777777766542 33455666666666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
...|+ +++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|
T Consensus 87 ~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQK-YDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcC-HHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666 6677777766665532 245555666666666666666666666665553 23455566666666666666666
Q ss_pred HHHHHHHHH
Q 044251 361 EGLFQEMKT 369 (686)
Q Consensus 361 ~~~~~~m~~ 369 (686)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-08 Score=105.64 Aligned_cols=302 Identities=12% Similarity=0.029 Sum_probs=197.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----HHHH
Q 044251 275 IMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQE----VVGALMKSFCDEGLKNEALIIQMEMEKKGIP-SNA----IVYN 345 (686)
Q Consensus 275 ~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~----~~~~ 345 (686)
.+...+...|+ +++|..++++.+......+.. ++..+...+...|++++|...+++....... .+. .++.
T Consensus 19 ~~a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445567787 999999999998865333332 5667778889999999999999987654111 122 3466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 346 TLINAYCKSNQLEEAEGLFQEMKTK----GLK--PT-SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418 (686)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 418 (686)
.+...+...|++++|...+++..+. +.. |. ...+..+..++...|++++|..++++..+.....
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 7888899999999999999987653 221 22 3456668888889999999999988876542211
Q ss_pred HHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHH
Q 044251 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--IETYT----ALLDAF 492 (686)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~ll~~~ 492 (686)
+ ......++..+...+...|++++|...+++.......++ ..... ..+..+
T Consensus 169 ------~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 169 ------Q-----------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp ------C-----------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred ------C-----------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 0 001123455666777788888888888887765311111 11111 223446
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEG---TRVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQPTL-MTYNMLMNAYGR 564 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~ 564 (686)
...|+++.|...++........+ ....+..+...+...|++++|...+++.... +..++. .++..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 67888888888888877543221 1335667778888889999999988886532 211122 366677888889
Q ss_pred cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 565 GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.|+.++|...+++..... +. ...+..+...| +....+++.+....
T Consensus 306 ~g~~~~A~~~l~~al~~~--~~----~g~~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALKLA--NR----TGFISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HTCHHHHHHHHHHHHHHH--HH----HCCCHHHHTTH--HHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHh--cc----ccHHHHHHHcc--HHHHHHHHHHHhCC
Confidence 999999999998887421 00 11122333344 45556666665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-09 Score=109.15 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=126.6
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGTR 517 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~ 517 (686)
..+++.+..+|...|++++|+..|++..+. +..+ ...++..+..+|...|+++.|...+++.++. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 456778888899999999999999887653 1111 1256778888999999999999999998872 223447
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC-HHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGL----QPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD-SVT 589 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~~ 589 (686)
.++..+...|.+.|++++|...+++..+... +.....+..+...|...|+ +.+|+.++++. +..|+ ...
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHH
Confidence 7888999999999999999999999875421 2224456777777778888 77777777762 33333 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
+..+...|...|++++|..+++++++
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-09 Score=99.33 Aligned_cols=201 Identities=8% Similarity=-0.035 Sum_probs=122.4
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
|...+......+...|++++|+..|++.++....++...+..+..++...|++++|+..+++.++.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666677777777777777777777665333566666666667777777777777777777654 445566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTL-------MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD---SVTYSTMIY 595 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~ 595 (686)
.|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777766554 2244 34666666666666777777777666643 443 345555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchhhcccchhHHHHHHHhh
Q 044251 596 AFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKR 675 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~ 675 (686)
++...| ..+++++...+ ..+...|.... ....+.-++|+..|.++.+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--------------------------~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--------------------------AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHhhc
Confidence 554333 23334433322 11222221111 01223458899999999999
Q ss_pred CCCCccc
Q 044251 676 HPRTQSH 682 (686)
Q Consensus 676 ~p~~~~~ 682 (686)
.|+++++
T Consensus 210 ~p~~~~~ 216 (228)
T 4i17_A 210 SPNRTEI 216 (228)
T ss_dssp CTTCHHH
T ss_pred CCCCHHH
Confidence 9988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-09 Score=119.81 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
++.+|+.|..+|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|+ +++|++.|+++++.... +...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555555555555555555555554431 2234445555555555555 55555555555554321 344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 314 KSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPE 393 (686)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 393 (686)
.+|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++.++.... +...|..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 555555555555555555555422 24555555555555555555555555555554322 3445555555555555555
Q ss_pred HHHHHHHHHH
Q 044251 394 IVEKLLLELQ 403 (686)
Q Consensus 394 ~a~~~~~~m~ 403 (686)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-08 Score=104.48 Aligned_cols=199 Identities=10% Similarity=0.043 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CC-CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCC-CC
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGL-----EP-NAKSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIK-PT 446 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~p-~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~ 446 (686)
++..+..+|...|+++.|...+.+..+... .+ ...+++.+...|...|+. +.|...|++..+. +.. ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY-DKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHcCCHHHH
Confidence 344444444455555555444444432100 00 122333344444444443 4455544444332 100 12
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLRE----EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEK----VEGTRV 518 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~ 518 (686)
..++..+..+|...|++++|+..+++.... +.+....++..+...+.+.|+++.|...+++.++.. .+....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 346777888899999999999999888761 222336778888889999999999999999988752 222344
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQ---YLEARDVVSEFGKIGLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.++.+...|...++ +.+|+..+++. +..+ ....+..+...|...|++++|...|+++.+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666667777788 77777777752 2222 244667888999999999999999998864
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-10 Score=108.57 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=150.4
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc------CCCC-ChhhHhhh
Q 044251 388 RRMQPEIVEKLLLELQDM-------GLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV------GIKP-TSHSYTAL 453 (686)
Q Consensus 388 ~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 453 (686)
..|++++|+.++++..+. ........+..+...|...|+. ++|...|+++... +-.| ...++..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777666542 1122355677777778888776 7798888887765 2112 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C-CCCCHHH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLRE------EI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE------K-VEGTRVT 519 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 519 (686)
...|...|++++|+..|++.... .. +....++..+...+...|++++|...++++++. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999888764 11 223467788888888899999999999888865 1 1234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHH--H-CC-CCC-C
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKI-------GLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMA--T-LN-IKP-D 586 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-~g-~~p-d 586 (686)
+..+...|...|++++|..+++++.+. ... .....|..+...+...+....+..+..... . .+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888888888999999999999887653 111 123344444444444444333332211111 1 11 112 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..++..+..+|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999998753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=95.26 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=132.0
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPS-IETYTA----------------LLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
+......+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|+..+++.++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 333455677788888888888888774 333 345555 8889999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHCCCCCCH--H
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ--TSKLPQLLKEMATLNIKPDS--V 588 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~--~ 588 (686)
+.+..++..+..+|...|++++|...|+++++.. +.+..+|..+..+|...|+ ...+...++... .|+. .
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 6688999999999999999999999999999876 4488999999999876654 344555565554 3443 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+..+..++...|++++|+..|+++++ +.|+......+.++
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 455566777889999999999999986 45888766655554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-08 Score=84.71 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+..+...+...|+++.|..+++.+.+.. +.+..++..++..+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555666666666666666665544 3455566666666666677777777777666554 3356666677777777
Q ss_pred cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 565 GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
.|++++|.++++++.... +.+..++..++.++...|++++|..+++++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776542 234666667777777777777777777777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-09 Score=104.11 Aligned_cols=158 Identities=11% Similarity=0.007 Sum_probs=90.8
Q ss_pred hcCChhHHHHHHHHHHhc-----C-CCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccC-------CCCCCHHHHHHHH
Q 044251 176 NDGLLGCCLYFYEWMRLQ-----E-PSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQS-------KEFRDAHVYNAAI 242 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li 242 (686)
..|++++|+.+|+.++.. . .......++..++.++...|++++|+..|++.... ..+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777776653 1 11223456666667777777777777777665432 1113455666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN------NVRP-DHVTCSIMITAMRKNGRSAKEAWEFFEKMNRK------GVKL-SQEV 308 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~------~~~~-~~~~ 308 (686)
..|...|++++|++.|++.... ...| ...++..+...+...|+ +++|.++++++++. +..| ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7777777777777777666543 0012 23445555556666665 66666666666553 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 309 VGALMKSFCDEGLKNEALIIQMEMEK 334 (686)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (686)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.96 E-value=8.5e-07 Score=94.31 Aligned_cols=374 Identities=11% Similarity=-0.041 Sum_probs=190.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR-YDDAWKAY 258 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 258 (686)
+..|..+|+.++..-|. |+++.+..+|++... .. |++.+|...+....+.+. .+....+|
T Consensus 11 i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~-~~-ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLK-KS-YNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHST-TC-CCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhc-cC-CCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 66667777776655332 667777777777666 22 577777777777766663 34456667
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------c
Q 044251 259 EAMEAN-NVR-PDHVTCSIMITAMR----KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD-------------E 319 (686)
Q Consensus 259 ~~m~~~-g~~-p~~~~~~~ll~~~~----~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------------~ 319 (686)
+..... |.. .+...|...+.-+. ..++ .+.+..+|++++.....--...|......-.. .
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~-~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR-IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH-HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 666543 422 35566666665432 2233 66677777777764221111222222211100 1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 320 GLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN--Q-----LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQP 392 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 392 (686)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++.... -+...|...+..+.+.|+.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence 122233333333332100013345555444422210 0 3446667777766432 3456677677777777888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 393 EIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
+.|..+|++.... |...........+.... + +++.+.+. +.. ...+.+ .
T Consensus 230 ~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~----~~~~l~~~---------------~~~-~~~~~~-----~ 278 (493)
T 2uy1_A 230 EKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---A----VYGDLKRK---------------YSM-GEAESA-----E 278 (493)
T ss_dssp HHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---H----HHHHHHHH---------------TC--------------
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---H----HHHHHHHH---------------HHh-hccchh-----h
Confidence 8888888877766 33222111111111110 1 12222111 000 000000 0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCC
Q 044251 473 MLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPT 551 (686)
Q Consensus 473 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~ 551 (686)
. .. .......|...+..+.+.++.+.|..+|+.+ ... ..+..+|...+..-...+ +.+.|..+|+...+.. +.+
T Consensus 279 ~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~ 353 (493)
T 2uy1_A 279 K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDS 353 (493)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTC
T ss_pred h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCC
Confidence 0 00 0001234555555555666777777777777 221 234444443332222223 5777888887776543 224
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 552 LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 552 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
+..|...+....+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++++
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666666667777777887777762 2456666666655667888888887777764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-08 Score=83.05 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=113.3
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
.|..+...+...|++++|+.+++++.... +.+...+..+...+...|+++.|...++++.... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56778888999999999999999998763 3467788888899999999999999999998876 567788889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..|++++|..+++++.+.. +.+..++..++.++.+.|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999988765 447888999999999999999999999998864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-07 Score=90.50 Aligned_cols=232 Identities=13% Similarity=0.030 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 166 ECVQLLELMANDGLL-GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR--MGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~-~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
.+...+..+.+.|.+ ++|+..++.++...|... .+|+....++...| ++++++..++.+....+ .+..+|+.-.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~--taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~ 110 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHY--TIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHH--HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHH
Confidence 344556666666666 599999999999988665 78888899999988 99999999999887443 6777888776
Q ss_pred HHH----HHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 243 SGL----FWC---GRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK--EAWEFFEKMNRKGVKLSQEVVGALM 313 (686)
Q Consensus 243 ~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~a~~~~~~m~~~~~~~~~~~~~~li 313 (686)
.++ ... +++++++++++.+.+.. +-+-.+|+.-.-.+...+. ++ ++++.++++++.++. |...|+...
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666 555 78999999999998764 5577889888888888887 77 899999999988755 788888877
Q ss_pred HHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHH
Q 044251 314 KSFCDEGL------KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEE-AEGLFQEMKTKG--LKPTSATFNILMD 384 (686)
Q Consensus 314 ~~~~~~g~------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~ll~ 384 (686)
..+...+. ++++++.++.++...+ -|...|+.+-..+.+.|+... +..+.+++.+.+ -..+...+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 77777776 8899999999888754 489999998888888887444 445666555433 1236778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044251 385 AYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~ 404 (686)
++.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.6e-08 Score=94.45 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=126.7
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSEKV--EGTRVTF 520 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 520 (686)
+...+..+...+.+.|++++|+..|+++.... +.+ ...+..+..++...|+++.|...|+.+++... +....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666777788888888888888887752 223 56677777788888888888888888877642 1234566
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcCCccHHHHHH
Q 044251 521 NILLDGFAK--------QGQYLEARDVVSEFGKIGLQPTLMTY-----------------NMLMNAYGRGGQTSKLPQLL 575 (686)
Q Consensus 521 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~l~ 575 (686)
..+..++.. .|++++|...|+++++.... +...+ ..+...|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 667777777 88888888888887765422 32333 56688899999999999999
Q ss_pred HHHHHCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHH
Q 044251 576 KEMATLNIKPD----SVTYSTMIYAFVRV----------RDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 576 ~~m~~~g~~pd----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+++.+. .|+ ...+..++.+|... |++++|+..++++++.. |+..
T Consensus 172 ~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 229 (261)
T 3qky_A 172 EAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSP 229 (261)
T ss_dssp HHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCCh
Confidence 999874 343 46788888888876 89999999999999854 6654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-08 Score=96.48 Aligned_cols=96 Identities=9% Similarity=-0.076 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----
Q 044251 308 VVGALMKSFCDE-GLKNEALIIQMEMEKKGIPS-N----AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTS----- 376 (686)
Q Consensus 308 ~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----- 376 (686)
++..+...|... |++++|...|++..+..... + ..+++.+...|.+.|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344444444443 45555544444443321000 0 233444555555555555555555555443221111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044251 377 -ATFNILMDAYSRRMQPEIVEKLLLELQ 403 (686)
Q Consensus 377 -~~~~~ll~~~~~~~~~~~a~~~~~~m~ 403 (686)
..|..++.++...|++++|...|++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 133444445555555555555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-08 Score=91.80 Aligned_cols=196 Identities=10% Similarity=-0.015 Sum_probs=121.6
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIK-PS-IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTR--VTFN 521 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 521 (686)
+...+..+...+.+.|++++|+..|+++...... +. ...+..+..++.+.|+++.|+..|+.+++....... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788888899999999888875321 11 356777788888888888888888888876532221 2444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 522 ILLDGFAK------------------QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 522 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
.+..++.. .|++++|...|+++++.. +-+...+..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 345555555555555432 11222221111100 000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhhhhhcchhhhHHHHHHHHhcccchh
Q 044251 584 KPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS----YEKLRSILDVKVATKNRRDKSAILGIINSKMGMVK 659 (686)
Q Consensus 584 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (686)
......+...+.+.|++++|+..++++++.. |+... +..++.++ ...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~------------------------~~~ 197 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAY------------------------RQM 197 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHH------------------------HHT
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHH------------------------HHc
Confidence 0112356678889999999999999999854 55432 22222222 144
Q ss_pred hcccchhHHHHHHHhhCCCCccccCCC
Q 044251 660 AKKKGKKDEFWKYKKRHPRTQSHAHNG 686 (686)
Q Consensus 660 ~~~~~a~~~f~~~~~~~p~~~~~~~~~ 686 (686)
|..++|++.|.+....+|++-.||||.
T Consensus 198 g~~~~A~~~~~~l~~~~~~~~~~~~~~ 224 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANSSNTLEHHHHH 224 (225)
T ss_dssp TCHHHHHHHHHHHHHCCSCCCCCTTCC
T ss_pred CCcHHHHHHHHHHHhhCCCchhhcccC
Confidence 588999999999999999999988874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-07 Score=88.72 Aligned_cols=246 Identities=8% Similarity=-0.031 Sum_probs=163.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMA 431 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A 431 (686)
.-.|.+..++.-...+ ........-..+.+++...|++... ..-.|....+..+...+ .. + +
T Consensus 24 fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~-~----a 85 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT-K----N 85 (310)
T ss_dssp HTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT-T----C
T ss_pred HHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc-c----H
Confidence 3467777777633222 1122223334456777777766531 11234443444444333 22 1 5
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMS 510 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 510 (686)
...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66677666554 34555566888899999999999999998877543 23567888889999999999999999999977
Q ss_pred cCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 511 EKVEG-----TRVTFNILLDGFA--KQG--QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 511 ~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
. .| +..+...|+.++. ..| ++.+|+.+|+++.+. .|+..+...|+.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 34 3455555655533 334 899999999998654 355334444555888999999999999976642
Q ss_pred -----CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 582 -----NI---KP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 582 -----g~---~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
+. .| |+.++..+|......|+ +|.++++++.+.. |+...
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp~ 288 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHAF 288 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCChH
Confidence 10 14 57778777777777887 8899999998854 66553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.6e-08 Score=94.46 Aligned_cols=213 Identities=10% Similarity=-0.031 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHhcccCCC--CCCHHHH
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVS-PRACSVLFPVLGRARMGDDLMVLFKNLPQSKE--FRDAHVY 238 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 238 (686)
-+...+......+.+.|++++|+..|+.++...|.... +.++..++.++.+.|++++|+..|+++....+ +....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 36677888899999999999999999999988775432 57888889999999999999999998876422 1235677
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 239 NAAISGLFW--------CGRYDDAWKAYEAMEANNVRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVV 309 (686)
Q Consensus 239 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~ 309 (686)
..+..++.. .|++++|+..|+++.+. .|+. .....+..... ....+ ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~--------~~~~~-----------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRE--------LRAKL-----------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHH--------HHHHH-----------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHH--------HHHHH-----------HHHH
Confidence 888888888 89999999999998775 3432 22222111100 00000 1124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCC--
Q 044251 310 GALMKSFCDEGLKNEALIIQMEMEKKGIPS--NAIVYNTLINAYCKS----------NQLEEAEGLFQEMKTKGLKPT-- 375 (686)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~-- 375 (686)
..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 566778888889999998888888763321 345677777777765 888999999988887633211
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 044251 376 SATFNILMDAYSRRMQPEIV 395 (686)
Q Consensus 376 ~~~~~~ll~~~~~~~~~~~a 395 (686)
......+..++...++++.+
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 23455555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.7e-08 Score=95.73 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCCC-ChhhHhhhHHHHHhcCCHHH
Q 044251 391 QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIKP-TSHSYTALIHAYSVGGWHEK 465 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~ 465 (686)
++++|...|.+.. ..|...|+. ++|...|.+.... |-.+ ...+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a~---------------~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQAA---------------TIYRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHH---------------HHHHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4777777777662 234445565 7788888776554 2111 14678888999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHHcCCHH
Q 044251 466 AYAAFENMLREEIK-PS----IETYTALLDAFRRS-GDTGMMMKIWKLMMSEKVEG-T----RVTFNILLDGFAKQGQYL 534 (686)
Q Consensus 466 A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~ 534 (686)
|+..|++.+..... .+ ..++..+..+|... |++++|+..|++.++..... + ..+++.+...|...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999888663110 11 35778888888885 99999999999988653111 1 456888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--Hc
Q 044251 535 EARDVVSEFGKIGLQPTL------MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS------VTYSTMIYAFV--RV 600 (686)
Q Consensus 535 ~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~~~~~li~~~~--~~ 600 (686)
+|...|+++.+....... ..|..++.++...|++++|...|++..+ +.|+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999998876533221 2577788889999999999999998874 34432 13444556554 45
Q ss_pred CCHHHHHHHHHHHH
Q 044251 601 RDFKRAFFYHKQMV 614 (686)
Q Consensus 601 g~~~~A~~~~~~m~ 614 (686)
+++++|+..|+++.
T Consensus 254 ~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM 267 (292)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCC
Confidence 67888888887664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-08 Score=90.72 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+.+.+......+...|++++|+..|+.+....|... ..+... ... . ........++.+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~-----~~~-------------~-~~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWT-----NVD-------------K-NSEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHH-----HSC-------------T-TSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHh-----hhc-------------c-hhhhhHHHHHHHH
Confidence 445566678888899999999999999998866432 333330 000 0 0001223344466
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL- 321 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~- 321 (686)
.+|.+.|++++|+..|++..+.. +-+...+..+...+...|+ +++|+..|+++++..+. +..++..+...|...|.
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence 66666666666666666665542 2345566666666666666 66666666666665432 45566666655554443
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 322 -KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 322 -~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
...+...+..... ..|....+..+..++...|++++|...|++..+. .|+......+..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 2333344443322 1222223344455556667777777777777654 455554444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-07 Score=87.11 Aligned_cols=177 Identities=10% Similarity=0.045 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 044251 430 MAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSG----DTGMMMKIW 505 (686)
Q Consensus 430 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~ 505 (686)
+|..+|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4778888888764 77888889999999999999999999998864 66777778887877 6 899999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCccHHHHHHH
Q 044251 506 KLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQ-PTLMTYNMLMNAYGR----GGQTSKLPQLLK 576 (686)
Q Consensus 506 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~l~~ 576 (686)
++..+.+ +...+..|...|.. .+++++|+..|++..+.+.. .++..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998765 66778888888877 88999999999998877621 127888899999988 789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 044251 577 EMATLNIKPDSVTYSTMIYAFVRV-R-----DFKRAFFYHKQMVKSGQ 618 (686)
Q Consensus 577 ~m~~~g~~pd~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 618 (686)
+..+. ..+...+..|...|..- | ++++|+.+++++.+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99875 33556778888887653 3 89999999999998873
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-06 Score=91.36 Aligned_cols=366 Identities=8% Similarity=-0.069 Sum_probs=210.7
Q ss_pred ccCC-hhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 044251 212 RARM-GDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEA 290 (686)
Q Consensus 212 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a 290 (686)
+.|+ ++.|+.+|+..... . |. |+++.+..+|++.... .|++..|...+.-..+.+...+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~-~-P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL-Y-MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH-H-HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH-C-CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 3453 66777777776541 1 22 8899999999999885 689999999888877776434667
Q ss_pred HHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 291 WEFFEKMNRK-GV-KLSQEVVGALMKSFC----DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLF 364 (686)
Q Consensus 291 ~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (686)
..+|+.++.. |. ..+...|...+..+. ..++++.+..+|+..+......-...|......- +......+.+++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 7888887764 43 336788888887654 3467888999999998742111112232222211 111222333332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC-Ch-----HHHHHHHHHHH
Q 044251 365 QEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPR-KM-----SDMAADAFLRM 438 (686)
Q Consensus 365 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~-----~~~A~~~~~~~ 438 (686)
.+.. +.+..|..+++.+...-...+...|...+..-...+ +. .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 2211 122223333332221100012334444444322210 11 23467788888
Q ss_pred HHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC-----
Q 044251 439 KRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMM-MKIWKLMMSEK----- 512 (686)
Q Consensus 439 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~----- 512 (686)
....+. +...|...+..+.+.|+.++|..+|++.... +.+...+. .|+...+.+.. ..+++......
T Consensus 206 l~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 776443 5777888888888899999999999999886 33333222 22222111122 12222211000
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHCCCCCCHH
Q 044251 513 ---VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG-QTSKLPQLLKEMATLNIKPDSV 588 (686)
Q Consensus 513 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~ 588 (686)
......+|...+..+.+.+.++.|..+|+++ ... ..+...|-.....-...| +.+.|..+|+...+.- .-++.
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 0112356777788777888999999999998 322 235555543333323333 6999999999998752 22456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
.+...+.-....|+.+.|..+|+++. .....+...++..
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE 394 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 66777777788999999999998862 2455555555544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-08 Score=88.95 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 290 AWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS-NAIVYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
|...+++.++..+. +...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44555555543321 34555555555555555555555555555543321 23455555555656666666665555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=87.73 Aligned_cols=141 Identities=8% Similarity=-0.051 Sum_probs=76.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 455 HAYSVGGWHEKAYAAFENMLREEIKP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
..+...|++++|+..++..... .| +...+..+...|...|+++.|+..|++.++.. +.+..+|..+..+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344455666666666555432 12 22334455556666666666666666666554 44556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQL-LKEMATLNIKP-DSVTYSTMIYAFVRVR 601 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p-d~~~~~~li~~~~~~g 601 (686)
++|...|++..+.. +-+..+|..+...|.+.|++++|.+. ++++.+. .| ++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 66666666665554 22555666666666666666554443 3555542 34 3445554444444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=112.06 Aligned_cols=172 Identities=9% Similarity=-0.113 Sum_probs=112.1
Q ss_pred HccCChhHHHHHHHhcc--------cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044251 211 GRARMGDDLMVLFKNLP--------QSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRK 282 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 282 (686)
...|++++|++.|++.. . ..+.+...+..+...+.+.|++++|++.|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45666666666666655 3 223556667777777777777777777777776542 3355666666677777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 283 NGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEG 362 (686)
Q Consensus 283 ~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (686)
.|+ +++|++.|+++++.... +...+..+..++.+.|++++ ...|++..+... .+...|..+..+|.+.|++++|++
T Consensus 480 ~g~-~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGD-YDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTC-HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 776 77777777777765432 45666777777777777777 777777776643 366777777777777788888877
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 044251 363 LFQEMKTKGLKPT-SATFNILMDAYSRRM 390 (686)
Q Consensus 363 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 390 (686)
.|++..+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 77776654 333 345555666654433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.1e-07 Score=86.11 Aligned_cols=185 Identities=11% Similarity=-0.022 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCC--hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HHHH
Q 044251 411 AKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPT--SHSYTALIHAYSVGGWHEKAYAAFENMLREEIK-PSI-ETYT 486 (686)
Q Consensus 411 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~ 486 (686)
...+..+...+...|+. ++|...|+.+....+... ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34444555566677777 889999999998754322 357888899999999999999999999885322 111 2455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 487 ALLDAFRR------------------SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 487 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.+..++.. .|+.++|...|+.+++.. +.+..++.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 55555554 578999999999999875 33333333221110 011111
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
....-.+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|++.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112235677888999999999999999874 454 2568888999999999999999999888765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.79 E-value=6.3e-07 Score=87.29 Aligned_cols=162 Identities=13% Similarity=0.013 Sum_probs=89.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCC-CCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 044251 416 CLISAYGRPRKMSDMAADAFLRMKRVGI-KPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP-----SIETYTALL 489 (686)
Q Consensus 416 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll 489 (686)
.+..++...|+. ++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+...++
T Consensus 105 ~la~i~~~~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 105 LLATAQAILGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHH
Confidence 334444444443 445555554433332 11344555666677777777777777777765 344 244444454
Q ss_pred HHH--HHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCCHHHHH
Q 044251 490 DAF--RRSG--DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIG---------LQPTLMTYN 556 (686)
Q Consensus 490 ~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~~~ 556 (686)
.++ ...| ++..|..+|+++.+.. |+......++.++.+.|++++|.+.++.+.+.. -+.|+.++-
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 442 2223 6777777777765442 332222333336667777777777777654320 023566665
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
.+|......|+ +|.+++.++.+. .|+
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~--~P~ 285 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKL--DHE 285 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHT--TCC
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHh--CCC
Confidence 55555555665 777777777763 454
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-06 Score=84.71 Aligned_cols=219 Identities=8% Similarity=-0.012 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 044251 252 DDAWKAYEAMEANNVRPDHVTCSIMITAMRKNG-RSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF----CDE---GLKN 323 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 323 (686)
++|+++++.+...+ +-+..+|+.--.++...+ ..+++++++++.++...++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555442 223344555555554444 1255555555555554332 333343333333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 044251 324 EALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE--EAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ------PEIV 395 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~a 395 (686)
+++.+++.+.+...+ +..+|+.-..++.+.|.++ ++++.++.+.+..+. |...|+....++...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666665333 6666666666666666666 666677766665544 55566655555554444 4455
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcC--CCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 396 EKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVG--IKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
++.+..+....+ -|...++-+-..+.+.|+..+.+..++..+...+ -..+...+..++.+|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 555555444322 1344444433333333332232333333332221 0124455555555555556666666666665
Q ss_pred HH
Q 044251 474 LR 475 (686)
Q Consensus 474 ~~ 475 (686)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=103.18 Aligned_cols=150 Identities=11% Similarity=-0.091 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
++|...|++..+..+. +...|..+...|...|++++|+..|++..+. .+.+...+..+..+|...|++++|...+++.
T Consensus 6 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ---------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6688888877765433 5677888888888888888888888888775 2335677888888888888888888888888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHCC
Q 044251 509 MSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG---GQTSKLPQLLKEMATLN 582 (686)
Q Consensus 509 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g 582 (686)
++.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++.+.+
T Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 84 SDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8775 5567788888888888888888888888887765 34677788888888888 88888888888887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.5e-08 Score=87.67 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=119.0
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG-F 527 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 527 (686)
.+..+...+.+.|++++|+..|++..+. -+.+...+..+..++...|++++|...++.+.+... +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3455667788889999999998887664 234567788888888889999999999888876652 54444333222 1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A 606 (686)
...+...+|...+++..+.. +.+...+..+..++...|++++|...|+++.+..-.+ +...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223345788888887765 3478888889999999999999999999988653222 356788888889999999999
Q ss_pred HHHHHHHHH
Q 044251 607 FFYHKQMVK 615 (686)
Q Consensus 607 ~~~~~~m~~ 615 (686)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-07 Score=92.42 Aligned_cols=163 Identities=6% Similarity=-0.114 Sum_probs=109.9
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVT-FNILL 524 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li 524 (686)
+...+..+...+...|++++|+..|++.... -+-+...+..+...+...|++++|...++.+.... |+... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3455666667777777888888877777764 23355677777777777778888877777776554 23322 22222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcC
Q 044251 525 DGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD---SVTYSTMIYAFVRVR 601 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~li~~~~~~g 601 (686)
..+...++.++|...+++..... +.+...+..+...|...|++++|+..|.++.+. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 33555666677777777777665 446777777777777778888888777777764 332 556777777777777
Q ss_pred CHHHHHHHHHHHH
Q 044251 602 DFKRAFFYHKQMV 614 (686)
Q Consensus 602 ~~~~A~~~~~~m~ 614 (686)
+.++|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.6e-08 Score=107.77 Aligned_cols=173 Identities=12% Similarity=-0.042 Sum_probs=142.0
Q ss_pred cCCCChHHHHHHHHHHHH--------HcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044251 422 GRPRKMSDMAADAFLRMK--------RVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFR 493 (686)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 493 (686)
...++. ++|++.+++.. +..+. +...+..+..+|.+.|++++|+..|+++.+. -+.+...|..+..++.
T Consensus 402 ~~~~~~-~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQP-VQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAER-VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCH-HHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
T ss_pred ccccCH-HHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CcchHHHHHHHHHHHH
Confidence 445565 78999998887 44332 5678888899999999999999999999885 2446788999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
..|++++|...|+++++.. +.+...+..+..+|.+.|++++ ...|+++.+.. +.+...|..+..+|.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999887 5677888999999999999999 99999998876 4478899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 044251 574 LLKEMATLNIKPD-SVTYSTMIYAFVRVRD 602 (686)
Q Consensus 574 l~~~m~~~g~~pd-~~~~~~li~~~~~~g~ 602 (686)
.|+++.+ +.|+ ...+..+..++...|+
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9999885 4665 6677788888766555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-07 Score=92.07 Aligned_cols=165 Identities=11% Similarity=0.016 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+.+.+..+...+.+.|++++|+..|+.++...|.. +.++..++.++.+.|++++|+..|+++....+ ..........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHH
Confidence 33455566666666677777777777766666543 35666666666666666666666666655322 1222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKL-SQEVVGALMKSFCDEGL 321 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 321 (686)
..+.+.++.++|...|++..... +.+...+..+...+...|+ +++|++.|+++++..... +...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33455555556666666655442 3344555555555666665 666666666666543221 13455555555555555
Q ss_pred HHHHHHHHHHH
Q 044251 322 KNEALIIQMEM 332 (686)
Q Consensus 322 ~~~A~~~~~~~ 332 (686)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=84.64 Aligned_cols=111 Identities=14% Similarity=-0.021 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMI 594 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li 594 (686)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++... .| +...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 55678888888999999999999999998876 458999999999999999999999999999975 45 578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
.+|...|++++|+..|+++++.. |+...-...-..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~~~~~A~~l 146 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEKLKIKAQSY 146 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 99999999999999999999854 777644443333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-06 Score=81.20 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=96.9
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHH
Q 044251 219 LMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNG----RSAKEAWEFF 294 (686)
Q Consensus 219 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~~a~~~~ 294 (686)
|++.|++..+. .++.++..|...|...+++++|++.|++..+.| +...+..|-..|.. + + .++|+++|
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~-~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQAD-YPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCC-HHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCC-HHHHHHHH
Confidence 34444444432 345555555666666666666666666655543 34444444444444 3 3 56666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 044251 295 EKMNRKGVKLSQEVVGALMKSFCD----EGLKNEALIIQMEMEKKGIP-SNAIVYNTLINAYCK----SNQLEEAEGLFQ 365 (686)
Q Consensus 295 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 365 (686)
++..+.| +...+..|...|.. .+++++|...|+...+.|.. .....+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44555555555554 56666666666666665421 015566666666666 566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 044251 366 EMKTKGLKPTSATFNILMDAYSRR-M-----QPEIVEKLLLELQDMG 406 (686)
Q Consensus 366 ~m~~~g~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~m~~~~ 406 (686)
+..+.+ .+...+..|..+|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666551 1333455555555432 2 6677777776666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.6e-06 Score=82.86 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=169.1
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 169 QLLELMANDG-LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR-MGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 169 ~l~~~l~~~g-~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
..++.+...+ ..++|+++++.++...|... .+|+....++...| .+++++.+++.+.... +.+..+|+.-..++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y--taWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHY--TVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444444 55789999999999988665 78888888888888 5999999999998844 478999999888888
Q ss_pred Hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 247 WC-G-RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAK--------EAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 247 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+. + ++++++++++.+.+.. +-|..+|+...-.+...++ ++ ++++.++++++..+. |...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 87 7 8999999999998774 4577788776666655554 44 889999999987654 888888888888
Q ss_pred HhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHH
Q 044251 317 CDEGL-------KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQL--------------------EEAEGLFQEMKT 369 (686)
Q Consensus 317 ~~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~ 369 (686)
.+.+. ++++++.+.++.... +-|...|+-+-..+.+.|+. ........++..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 77776 688888888888774 44888888877777766653 233333333332
Q ss_pred CC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044251 370 KG-----LKPTSATFNILMDAYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 370 ~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 404 (686)
.+ -.++...+..|+.+|...|+.++|.++++.+.+
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 21 124677778888888888888888888888754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-07 Score=96.73 Aligned_cols=155 Identities=8% Similarity=-0.145 Sum_probs=105.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044251 177 DGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWK 256 (686)
Q Consensus 177 ~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 256 (686)
.|++++|++.|+.+....|. +...+..++..+.+.|++++|+..|++..+.. +.+..++..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788888888888877664 34778888888888888888888888877643 3577888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 044251 257 AYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE---GLKNEALIIQMEME 333 (686)
Q Consensus 257 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~ 333 (686)
.|++..+.. +.+...+..+...+...|+ +++|.+.|+++++... .+...+..+...+... |++++|.+.+++..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888887653 3456777778888888887 8888888888887643 3567777888888888 88888888888887
Q ss_pred HCCC
Q 044251 334 KKGI 337 (686)
Q Consensus 334 ~~g~ 337 (686)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 7753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-07 Score=81.21 Aligned_cols=136 Identities=7% Similarity=-0.050 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044251 428 SDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKL 507 (686)
Q Consensus 428 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 507 (686)
.+.|+..++......+. +...+..+...|.+.|++++|+..|++.++.. +-+..+|..+..++...|+++.|+..|++
T Consensus 13 ~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 36777777766543221 34556778899999999999999999998852 34678999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 508 MMSEKVEGTRVTFNILLDGFAKQGQYLEARDV-VSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 508 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
+++.. +.+..++..+...|.+.|++++|... ++++.+.. +-++.+|......+...|+
T Consensus 91 al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 91 SVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99887 66788999999999999998876655 58888776 4478888888888877774
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-06 Score=81.12 Aligned_cols=169 Identities=9% Similarity=-0.030 Sum_probs=127.6
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCC--
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSI-----ETYTALLDAFRRSGDTGMMMKIWKLMMSEKV---EGT-- 516 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~-- 516 (686)
...+...+..+...|++++|+..+.+..+....... ..+..+...+...|+++.|...+++.++... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778889999999999999988875322111 2244455667788899999999999886421 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHCC----CCCC
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI--GLQPT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATLN----IKPD 586 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd 586 (686)
..+++.+...|...|++++|...++++.+. ..+.+ ..+|..++.+|...|++++|+.++++..+.. ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 558899999999999999999999997622 11111 2688999999999999999999999987531 1111
Q ss_pred -HHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 044251 587 -SVTYSTMIYAFVRVRDFKRA-FFYHKQMVK 615 (686)
Q Consensus 587 -~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 615 (686)
..+|..+..+|...|++++| ..++++++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67889999999999999999 787887764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=84.34 Aligned_cols=189 Identities=14% Similarity=-0.032 Sum_probs=127.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHccCChhHHHHHHHhccc------------CCCC----
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVL-------FPVLGRARMGDDLMVLFKNLPQ------------SKEF---- 232 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~------------~~~~---- 232 (686)
..+++.+|++.|..+....|... ..|.-+ ..++.+.++..+++..+..-.. .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~--Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC--DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhh--HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 68999999999999999988765 777766 4566666556666555554433 1110
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--H
Q 044251 233 ----RDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLS--Q 306 (686)
Q Consensus 233 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~--~ 306 (686)
.-..++-.+...+...|++++|.++|+.+... .|+......+...+.+.++ +++|+..|+...... .+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhccC-CcccHH
Confidence 11345566788888999999999999888765 3554444445556677777 888888887554432 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 307 EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPS--NAIVYNTLINAYCKSNQLEEAEGLFQEMKTK 370 (686)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (686)
..+..+..++...|++++|+..|++.......| .......+..++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356667777777777777777777776432213 2335566666777777777777777777765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=80.70 Aligned_cols=126 Identities=9% Similarity=-0.072 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044251 487 ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566 (686)
Q Consensus 487 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 566 (686)
.+...+...|++++|...+++++ .++..++..+...|...|++++|...+++..... +.+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444555566666666555542 3355566666666666666666666666655544 335556666666666666
Q ss_pred CccHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 567 QTSKLPQLLKEMATLN--------------IKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 567 ~~~~A~~l~~~m~~~g--------------~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
++++|++.|+++.+.. ..| ....+..+..++...|++++|...++++++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666666531 111 12566677777777777777777777777643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-06 Score=85.24 Aligned_cols=208 Identities=10% Similarity=0.000 Sum_probs=142.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCCh---hhHhhhHHHHHhcCCHHHHHHHHHHHH
Q 044251 398 LLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTS---HSYTALIHAYSVGGWHEKAYAAFENML 474 (686)
Q Consensus 398 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 474 (686)
.+..+..-...|+..+...+...+...- + .++. .....+. ..+...+..+...|++++|..++++..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444443344677777777776665431 1 1111 1111122 223334677889999999999999988
Q ss_pred HcCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 475 REEI-KPSI----ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-GT----RVTFNILLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 475 ~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 544 (686)
.... .|+. ..+..+...+...++++.|...++++++.... .+ ..+++.+...|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7422 2221 13334666667778999999999999874322 22 3478999999999999999999999987
Q ss_pred h----C-CCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 044251 545 K----I-GLQP-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPD-SVTYSTMIYAFVRVRD-FKRAFFYHKQ 612 (686)
Q Consensus 545 ~----~-~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~~~~li~~~~~~g~-~~~A~~~~~~ 612 (686)
+ . +..+ ...+|..++.+|.+.|++++|+.++++..+. +..+. ..+|..++.++.+.|+ +++|.+.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3 2 1112 2347889999999999999999999988742 22233 6788999999999994 6999999998
Q ss_pred HHH
Q 044251 613 MVK 615 (686)
Q Consensus 613 m~~ 615 (686)
++.
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-07 Score=90.09 Aligned_cols=158 Identities=7% Similarity=-0.050 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHH
Q 044251 456 AYSVGGWHEKAYAAFENMLREEI----KP-SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV---EG--TRVTFNILLD 525 (686)
Q Consensus 456 ~~~~~g~~~~A~~~~~~m~~~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~ 525 (686)
.|...|++++|...|.+...... .. -..+|..+...|...|++++|+..+++.++... .+ ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554433200 00 023445555555555555555555555543310 11 1234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQP-----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKPD-SVTYSTMIY 595 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~~~~li~ 595 (686)
.|.. |++++|+..|++..+..... ...+++.+...|.+.|++++|+..|+++... +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 66666666666654321110 1345556666666666666666666665532 11111 124444555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 044251 596 AFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~ 614 (686)
++...|++++|...+++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555566666666666665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.9e-07 Score=90.17 Aligned_cols=156 Identities=8% Similarity=-0.026 Sum_probs=105.1
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREE--I-KP--SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG-----TR 517 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~ 517 (686)
.+|+.+..+|...|++++|+..|++.+..- . .+ ...++..+...|.. |+++.|+..|++.++..... ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 355666677777788888887777765431 0 11 12566677777777 88888888888877642111 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC------
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIG----LQPT-LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD------ 586 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd------ 586 (686)
.+++.+...|...|++++|+..|++..... ..+. ...+..++.++...|++++|...|++.. . .|+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e 232 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHH
Confidence 578888899999999999999999877532 1111 2366777788888899999999999988 3 342
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 044251 587 SVTYSTMIYAFVRVRDFKRAFF 608 (686)
Q Consensus 587 ~~~~~~li~~~~~~g~~~~A~~ 608 (686)
......++.++ ..|+.+.+..
T Consensus 233 ~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 233 CAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHH
Confidence 12344555554 5677665555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=74.01 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
...+......|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456677778888888888888888887765 4478888888888888888888888888888642 2257788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSI 631 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 631 (686)
+...|++++|++.|+++++.. |+ ...+..+.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD--PSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHHHh
Confidence 888888888888888888753 43 4444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-06 Score=80.16 Aligned_cols=132 Identities=11% Similarity=-0.056 Sum_probs=112.7
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++.++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4556677888999999999999877 35688899999999999999999999999999876 667889999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQP---------------TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDS 587 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 587 (686)
..|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++.+. .|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999999998754221 2378899999999999999999999999964 5553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-06 Score=75.98 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|+++.|...+...++.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555566666777777777777766654 4456677777777777777777777777777654 34677777777788
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTM--IYAFVRVRDFKRAFFYHKQMV 614 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 614 (686)
...|++++|...++++.... +.+...+..+ +..+...|++++|+..+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888777642 2244444333 333667778888887777653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-05 Score=78.07 Aligned_cols=185 Identities=9% Similarity=-0.029 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG-RYDDAWKAYEAMEANNVRPDHVTCSIMITA 279 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 279 (686)
.++..+...+.+.+..++|+.+++.+....+ .+..+|+.--.++...| ++++++++++.+...+ +-+..+|+.-...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444445555666778888888777443 67778888777777777 4888888888887764 4456677777766
Q ss_pred HHHc-C-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 280 MRKN-G-RSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN--------EALIIQMEMEKKGIPSNAIVYNTLIN 349 (686)
Q Consensus 280 ~~~~-g-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~g~~~~~~~~~~li~ 349 (686)
+... + + +++++++++++++...+ +..+|+.....+.+.|.++ ++++.++++.+..+. |..+|+....
T Consensus 133 L~~l~~~~-~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~ 209 (349)
T 3q7a_A 133 LDRISPQD-PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWY 209 (349)
T ss_dssp HHHHCCSC-CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHhcCCC-hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6665 5 4 67788888888776543 6666666555555555554 666666666665433 6666666666
Q ss_pred HHHHcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044251 350 AYCKSNQ-------LEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ 391 (686)
Q Consensus 350 ~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 391 (686)
.+.+.+. ++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 6655554 56666666666554333 55566555554444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.8e-07 Score=79.17 Aligned_cols=110 Identities=10% Similarity=-0.082 Sum_probs=90.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC
Q 044251 504 IWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI 583 (686)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 583 (686)
.++.+++.. +.+...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 344554443 3456677778888899999999999999988776 458889999999999999999999999999875
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 584 KP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 584 ~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.| +...+..+..+|...|++++|+..|+++++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44 57888889999999999999999999988753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.1e-07 Score=82.53 Aligned_cols=158 Identities=8% Similarity=-0.090 Sum_probs=110.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHHcCC
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----KV-EGTRVTFNILLDGFAKQGQ 532 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 532 (686)
...|++++|..+++.+... ......++..+...+...|+++.|...+++.++. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855544331 2234567777778888888888888888887763 11 2235577788888889999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcC
Q 044251 533 YLEARDVVSEFGKI----GLQP--TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPD----SVTYSTMIYAFVRVR 601 (686)
Q Consensus 533 ~~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g 601 (686)
+++|...+++.... +-.+ ....+..+...+...|++++|...+++.....- ..+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999998886643 2111 245678888899999999999999988774210 112 334678888999999
Q ss_pred CHHHHHHHHHHHHHC
Q 044251 602 DFKRAFFYHKQMVKS 616 (686)
Q Consensus 602 ~~~~A~~~~~~m~~~ 616 (686)
++++|...++++++.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.4e-06 Score=74.86 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=108.1
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG 526 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 526 (686)
...+..+...+...|++++|...|++.... .+.+..++..+..++...|+++.|...+++.++.. +.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345777888899999999999999999885 34467888889999999999999999999999876 5678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCccHHHHHHHHHH
Q 044251 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA--YGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~ 579 (686)
+...|++++|...++++.+.. +.+...+..+..+ +...|++++|+..+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999998775 3366666444444 778899999999988765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-05 Score=76.01 Aligned_cols=176 Identities=6% Similarity=-0.054 Sum_probs=104.8
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHhcccCCCCCCHHHH
Q 044251 170 LLELMANDGLLG-CCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM----------GDDLMVLFKNLPQSKEFRDAHVY 238 (686)
Q Consensus 170 l~~~l~~~g~~~-~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 238 (686)
.+....+.|.+. +|+.+++.++...|... .+|+.-..++...+. +++++.+++.+... .+.+..+|
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y--taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW 111 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFA--TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTW 111 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 344445566665 78888888888777654 555555555444333 45666777666653 23567777
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 239 NAAISGLFWCG--RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 239 ~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+.-..++.+.| ++++++++++.+.+.. +-|..+|+.-.-++...|..++++++.+.++++..+. |...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 77666666666 3677777777776653 4456666666666666665346777777777766543 566666555554
Q ss_pred Hhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 317 CDE--------------GLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 317 ~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
.+. +.++++++.+....... |-|..+|+-+-..+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 443 23455555555555542 23555555443333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-06 Score=71.08 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+......|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444455555555555555554443 3344555555555555555555555555555443 2245555555555555
Q ss_pred cCCccHHHHHHHHHHH
Q 044251 565 GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~ 580 (686)
.|++++|++.|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=78.84 Aligned_cols=122 Identities=7% Similarity=0.097 Sum_probs=93.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCc--c
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA-YGRGGQT--S 569 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 569 (686)
...|+++.|...++..++.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777777665 5567788888888888888888888888887765 3477788888888 7788888 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+|...++++.... +-+...+..+..++...|++++|...++++++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988752 2257788888889999999999999999988764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-06 Score=72.74 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC--CCCC----HHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN--IKPD----SVTY 590 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~~~ 590 (686)
..++..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456778888888999999999999988776 4478888899999999999999999998887531 1112 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSI 631 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 631 (686)
..+..++...|++++|++.|++.++. .||+.+...+.++
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~l 125 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHHHh
Confidence 78888999999999999999998874 4788776665443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.9e-06 Score=69.00 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR 599 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 599 (686)
+..+...+...|++++|..+++++.+.. +.+..++..+...+.+.|++++|..+++++.... +.+..++..+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333444444444444444444443332 2233444444444444444444444444444321 1133344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 044251 600 VRDFKRAFFYHKQMVK 615 (686)
Q Consensus 600 ~g~~~~A~~~~~~m~~ 615 (686)
.|++++|..+++++++
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=5.9e-06 Score=69.69 Aligned_cols=117 Identities=7% Similarity=-0.073 Sum_probs=57.0
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
..+..+...+...|++++|+..|++.... .+.+...+..+...+...|+++.|...++..++.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444555555555555555555555543 12234444555555555555555555555555443 33344444455555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ 567 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 567 (686)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555544433 2244444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-06 Score=68.43 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
.+..+...+...|+++.|...++++++.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+..+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444555555555555444433 2344445555555555555555555555555443 234555555555555
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 564 RGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFV 598 (686)
Q Consensus 564 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 598 (686)
..|++++|..+++++.+.. +.+...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 5555555555555555431 113444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5e-06 Score=70.14 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|+++.|...+++++... +.+..++..+...+...|++++|...+++..... +.+...+..+..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444445555555555555555555443 3344445555555555555555555555554433 22344555555555
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
...|++++|...++++.... +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554431 1134444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.6e-06 Score=80.05 Aligned_cols=165 Identities=8% Similarity=0.055 Sum_probs=114.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH---HHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HH
Q 044251 238 YNAAISGLFWCGRYDDAWKAYEAMEANNV-RPDHV---TCS-IMITAMRKNGRSAKEAWEFFEKMNRKGVK-LS----QE 307 (686)
Q Consensus 238 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~---~~~-~ll~~~~~~g~~~~~a~~~~~~m~~~~~~-~~----~~ 307 (686)
+...+..+...|++++|.+++++..+... .|+.. .|. .+...+...++ +++|+..|++++..... .+ ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD-YEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33447778899999999999999877421 12211 122 34444445555 89999999999874322 12 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 044251 308 VVGALMKSFCDEGLKNEALIIQMEMEKK-----GIPS-NAIVYNTLINAYCKSNQLEEAEGLFQEMKTK----GLKPT-S 376 (686)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 376 (686)
+++.+...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|+..+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6888888899999999999888888741 1111 2347788888899999999999888877642 22222 4
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 044251 377 ATFNILMDAYSRRM-QPEIVEKLLLELQ 403 (686)
Q Consensus 377 ~~~~~ll~~~~~~~-~~~~a~~~~~~m~ 403 (686)
.+|..+..++...| +.++|...+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 57788888888888 4688888887765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-06 Score=73.51 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|...|++++|...|+++.... +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 456666677777788888888888877766 5677777788888888888888888888877765 33677777888888
Q ss_pred HhcCCccHHHHHHHHHHHCCCCCCHH
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKPDSV 588 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~pd~~ 588 (686)
...|++++|...|+++.+. .||..
T Consensus 115 ~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 8888888888888888764 46553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-06 Score=79.89 Aligned_cols=140 Identities=10% Similarity=-0.069 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT--LMTYNMLMNA 561 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~ 561 (686)
....+...+...|++++|.++|..+...+ +.+. ....+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34455667788899999999998887654 2233 56666668889999999999998654422 111 3467888999
Q ss_pred HHhcCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 562 YGRGGQTSKLPQLLKEMATLNIKPD--SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 628 (686)
+.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 9999999999999999985433253 4567778888999999999999999999865 664444333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-06 Score=82.95 Aligned_cols=131 Identities=9% Similarity=-0.045 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT--------------RVTFNILLDGFAKQGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 547 (686)
...+..+...+.+.|+++.|...|++.++...... ..+|..+..+|.+.|++++|+..++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35566666677777777777777777776642221 5788889999999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 044251 548 LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRA-FFYHKQMVK 615 (686)
Q Consensus 548 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 615 (686)
+.+...|..+..+|...|++++|+..|+++.+. .| +..++..+..++...|++++| ..+++.|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448889999999999999999999999999875 44 577888888899999999888 556776653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=85.32 Aligned_cols=99 Identities=7% Similarity=-0.114 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
+...+..+...+...|++++|+..|+.++...|. ++..+..++.+|.+.|++++|+..+++..... +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456667788888888888888888888887664 45778888888888888888888888877643 36778888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 243 SGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
.+|...|++++|+..|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888877653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.6e-06 Score=70.75 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
...+..+...+...|++++|...+++..+.. +.+..+|..+..+|...|++++|+..++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444444445555555555555555544433 2244445555555555555555555555554421 1134445555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~ 615 (686)
+...|++++|+..++++++
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-06 Score=82.92 Aligned_cols=132 Identities=9% Similarity=-0.032 Sum_probs=113.0
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--------------IETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
+...|..+...|.+.|++++|+..|++.+....... ..+|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888899999999999999999988532221 588999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHH-HHHHHHHH
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKL-PQLLKEMA 579 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 579 (686)
. +.+..+|..+..+|...|++++|...|+++++.. +.+...+..+..++.+.|+.++| ..+++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 6688899999999999999999999999999876 44788999999999999999888 44666665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=6e-06 Score=70.01 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|+++.|...++++++.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+..+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 444444444455555555555555544433 2344455555555555555555555555555443 22455555555555
Q ss_pred HhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 044251 563 GRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVR 601 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g 601 (686)
.+.|++++|.+.|++.... .| +...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 5555555555555555542 22 2334444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=77.87 Aligned_cols=122 Identities=10% Similarity=0.127 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDG-FAKQGQY-- 533 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 533 (686)
+...|++++|+..+++.... .+.+...+..+...|...|+++.|...++++++.. +.+...+..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 44567888888888887775 24466788888888888899999999988888775 4567778888888 7788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 534 LEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
++|...++++.... +.+...+..+..+|...|++++|...|+++.+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999888765 446788888888999999999999999998874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-05 Score=77.29 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 044251 308 VVGALMKSFCDEGLKNEALIIQMEMEKKG----IPS-NAIVYNTLINAYCKSNQLEEA-EGLFQEMK 368 (686)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 368 (686)
++..+...|.+.|++++|...+++..+.. ... -..+|..+..+|.+.|++++| ...|++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45555555555555555555555544321 110 145566666666666666666 55555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=73.05 Aligned_cols=99 Identities=10% Similarity=-0.071 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|.+.|++++|+..|+++.... +-+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44566667778888999999999999988776 4478888889999999999999999999988753 235778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|...|++++|+..++++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-05 Score=67.46 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIY 595 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~ 595 (686)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+. .| +...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3456667777778888888888888877765 447788888888888888888888888888764 34 4777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~ 616 (686)
++...|++++|+..++++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888888764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.3e-06 Score=76.50 Aligned_cols=154 Identities=12% Similarity=-0.039 Sum_probs=69.8
Q ss_pred ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCC
Q 044251 212 RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN----NVRP-DHVTCSIMITAMRKNGRS 286 (686)
Q Consensus 212 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~ 286 (686)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +..+ ...++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 45566666662222221 11134566666777777777777777766665431 1111 12344444555555555
Q ss_pred HHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcC
Q 044251 287 AKEAWEFFEKMNRK----GVK--LSQEVVGALMKSFCDEGLKNEALIIQMEMEKK----GIP-SNAIVYNTLINAYCKSN 355 (686)
Q Consensus 287 ~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g 355 (686)
+++|.+.+++.++. +.. ....++..+...+...|++++|...+++.... +.+ .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 56666555555432 100 01223444444455555555555554444321 100 00122344444455555
Q ss_pred CHHHHHHHHHHH
Q 044251 356 QLEEAEGLFQEM 367 (686)
Q Consensus 356 ~~~~A~~~~~~m 367 (686)
++++|.+.+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=81.09 Aligned_cols=121 Identities=14% Similarity=0.066 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 044251 484 TYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGT---------------RVTFNILLDGFAKQGQYLEARDVVSEFGKIGL 548 (686)
Q Consensus 484 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 548 (686)
.+..+...+...|+++.|...|++.++...... ..++..+..+|...|++++|...++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444555555555555555555554321111 2455555555556666666666666655543
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
+.+...|..+..+|...|++++|...|++..+. .| +..++..+..++...++.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555666666666666666666655543 23 3445555555555555444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=74.04 Aligned_cols=97 Identities=13% Similarity=-0.076 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
...+..+...+...|++++|...|+.++... +.+...|..+..+|...|++++|...|+++.... +.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455666667777777777777777777665 5567777777777777788888888777777665 3366777777777
Q ss_pred HHhcCCccHHHHHHHHHHH
Q 044251 562 YGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~ 580 (686)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7788888888887777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=77.60 Aligned_cols=98 Identities=13% Similarity=-0.042 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 305 SQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMD 384 (686)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 384 (686)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666677777777777777777776653 236667777777777777777777777776665332 4556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 044251 385 AYSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 385 ~~~~~~~~~~a~~~~~~m~~ 404 (686)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=67.05 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC--CCC----HHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI--KPD----SVTY 590 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~~~ 590 (686)
...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456677777888888888888888877665 44677888888888888888888888888775421 122 6678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
..+..++...|++++|...++++++.. |+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 888888889999999999999888754 6776666665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-05 Score=66.16 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|++++|...|++.++.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555556666666666666666666654 4456667777777777777777777777766654 33566777777777
Q ss_pred HhcCCccHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~ 580 (686)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.8e-05 Score=62.53 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR 564 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 564 (686)
+..+...+...|+++.|...++..+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444444444444444444433 2344444445555555555555555555544433 2244455555555555
Q ss_pred cCCccHHHHHHHHHHH
Q 044251 565 GGQTSKLPQLLKEMAT 580 (686)
Q Consensus 565 ~g~~~~A~~l~~~m~~ 580 (686)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-05 Score=62.95 Aligned_cols=111 Identities=17% Similarity=0.050 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYA 596 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 596 (686)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456667777778888888888888877654 3467777888888888888888888888877642 2257777777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRS 630 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 630 (686)
+...|++++|...++++++.+. .+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 8888888888888888776531 23444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=66.42 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL--QPT----LMTYNML 558 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 558 (686)
+..+...+.+.|++++|+..|++.++.. +.+..+|+.+..+|...|++++|+..+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555555544 34455555555555566666666665555543221 111 2345556
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
..++...|++++|++.|++.+.. .||+.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66666666666666666666542 4555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0017 Score=64.09 Aligned_cols=173 Identities=10% Similarity=-0.048 Sum_probs=120.4
Q ss_pred ccCChh-HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 212 RARMGD-DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR----------YDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 212 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
+.|.++ +|+.+++.+....+ .+..+|+.--.++...++ +++++.+++.+...+ +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445554 68999988887544 677778776665555444 577888888887653 44667788777777
Q ss_pred HHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----
Q 044251 281 RKNGR-SAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGL-KNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS---- 354 (686)
Q Consensus 281 ~~~g~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---- 354 (686)
...++ .+++++++++++++.... |..+|+.-...+...|. ++++++.++.+.+..+. |..+|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 77764 378888888888887644 77777777777777777 57888888888877544 777887777666655
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 355 ----------NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRR 389 (686)
Q Consensus 355 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 389 (686)
+.++++++.+.......+. |...|+.+-..+.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAG 240 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSS
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 3467777777777765444 666776554444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-05 Score=66.32 Aligned_cols=101 Identities=8% Similarity=-0.046 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTM 593 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 593 (686)
+.+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|+..+++..... +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466777888888888888888888888887765 4467888888888888888888888888888743 2257788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 044251 594 IYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 594 i~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..++...|++++|+..++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888889999998888888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-05 Score=68.15 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..++++++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777778888888888888877665 3377778888888888888888888888887642 224777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 044251 596 AFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+|...|++++|+..|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.3e-05 Score=72.15 Aligned_cols=132 Identities=11% Similarity=0.005 Sum_probs=100.7
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS---------------IETYTALLDAFRRSGDTGMMMKIWKLMMSE 511 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 511 (686)
...+..+...+...|++++|+..|++......... ...+..+..+|...|++++|+..++.+++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777888899999999999999887422111 267888889999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHH-HHHHHHHH
Q 044251 512 KVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP-QLLKEMAT 580 (686)
Q Consensus 512 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~ 580 (686)
. +.+..++..+..+|...|++++|...|++..+.. +-+...+..+..++...|+..++. ..+..|..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 6678899999999999999999999999998775 447888888888888877777666 45555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=65.70 Aligned_cols=99 Identities=8% Similarity=-0.059 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP--DSVTYSTMI 594 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~li 594 (686)
...+..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|...++++.+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455566666777777777777777776654 3366677777777777777777777777777642 22 466677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHCC
Q 044251 595 YAFVRV-RDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 595 ~~~~~~-g~~~~A~~~~~~m~~~g 617 (686)
.++... |++++|.+.++++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-05 Score=66.51 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 044251 485 YTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL--QPT----LMTYNML 558 (686)
Q Consensus 485 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 558 (686)
+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...++++.+... .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444555555555555555555443 33445555555555555555555555555543321 111 4555566
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIY 595 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 595 (686)
..+|...|++++|.+.|+++.+. .|+......+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 66666666666666666666553 344444444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.9e-05 Score=64.80 Aligned_cols=99 Identities=8% Similarity=-0.084 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
.+...+..+...+...|+++.|...|...++.. +.+..++..+..+|...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666666667777777777777777766655 4456677777777777777777777777776655 33667777777
Q ss_pred HHHHhcCCccHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+|...|++++|+..|+++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=67.07 Aligned_cols=96 Identities=14% Similarity=-0.109 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|++++|...|+.++... +.+...|..+..+|...|++++|...|++..... +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344455556666677777777776666655 4566666666667777777777777777766655 33566666677777
Q ss_pred HhcCCccHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~ 580 (686)
...|++++|...|+++.+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=9.9e-05 Score=63.68 Aligned_cols=98 Identities=10% Similarity=-0.052 Sum_probs=54.2
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFN 521 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 521 (686)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++..++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666653 344 3445555555555555555555555555443 33444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=65.73 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFV 598 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~ 598 (686)
+..+...+.+.|++++|...++++.+.. +.+...|..+..++...|++++|+..|+++.+. .| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445556677788888888888777665 346777777778888888888888888877764 44 4667777777788
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 044251 599 RVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 599 ~~g~~~~A~~~~~~m~~~ 616 (686)
..|++++|+..++++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=67.31 Aligned_cols=95 Identities=13% Similarity=-0.047 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
+......+.+.|++++|+..|+.++...|.. +..|..++.++...|++++|+..|++.....+ .+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4456778889999999999999999987754 58888899999999999999999998877443 67888899999999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 044251 247 WCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~ 264 (686)
..|++++|+..|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.1e-05 Score=67.90 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456666666677777777777777777665 4466677777777777777777777777777665 3367777777777
Q ss_pred HHhcCCccHHHHHHHHHHHC
Q 044251 562 YGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~~ 581 (686)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77778888887777777753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0001 Score=77.11 Aligned_cols=217 Identities=11% Similarity=-0.022 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
...-++.+...|++++|++.|..++...+...+... ..+......... ..++..++..|.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~-----------~~al~~l~~~y~ 66 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA---------GASVDDKRRNEQ-----------ETSILELGQLYV 66 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS---------SSSBCSHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH---------HHHHHHHHhhhH-----------HHHHHHHHHHHH
Confidence 344577888999999999999999988664432100 001111111111 123455666666
Q ss_pred HcCCHHHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHH-HcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHH
Q 044251 247 WCGRYDDAWKAYEAMEAN-NVRPDHV---TCSIMITAMR-KNGRSAKEAWEFFEKMNRK----GVKL-SQEVVGALMKSF 316 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~-g~~p~~~---~~~~ll~~~~-~~g~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~ 316 (686)
..|++++|.+.+..+... +..++.. .....+..+. ..|. .+.+..++...... +..+ -..++..+...+
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS-LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC-HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 667776666666665432 1111211 1222222222 2333 67777776665532 2222 245667777778
Q ss_pred HhcCCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHH
Q 044251 317 CDEGLKNEALIIQMEMEKK--GI---PSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTK--GL-KP-T--SATFNILMDA 385 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~--g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p-~--~~~~~~ll~~ 385 (686)
...|++++|..++..+... +. +....++..++..|...|++++|..++++.... .. .| . ...+..++..
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 8888888888777776542 11 112456777788888888888888888776542 11 11 1 2355666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 044251 386 YSRRMQPEIVEKLLLELQD 404 (686)
Q Consensus 386 ~~~~~~~~~a~~~~~~m~~ 404 (686)
+...++++.|...|.+..+
T Consensus 226 ~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 7778888888877776643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.5e-05 Score=60.68 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=48.7
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEG--TRVTFNILL 524 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li 524 (686)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.++.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455556666666666666666666665532 2234444444445555555555555555544432 22 344444444
Q ss_pred HHHHHc-CCHHHHHHHHHHHHh
Q 044251 525 DGFAKQ-GQYLEARDVVSEFGK 545 (686)
Q Consensus 525 ~~~~~~-g~~~~A~~~~~~~~~ 545 (686)
.++... |++++|.+.++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-05 Score=67.88 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHC----CCCC-CHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATL----NIKP-DSV 588 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~ 588 (686)
++..+...|...|++++|...+++..+.... .+ ..++..+..++...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5555666666677777777777665432100 11 445667777777888888888887776642 1111 145
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 589 TYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 589 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888889999999988887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00037 Score=72.70 Aligned_cols=195 Identities=11% Similarity=0.007 Sum_probs=123.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPT----------------SATFNILMDAYSRRMQPEIVEKLLLELQDMG-LEPNA- 411 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~- 411 (686)
.+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+++..+...- -.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34455666666666665554321110 1134556777777777777777776664321 11111
Q ss_pred --HHHHHHHHHhcCCCChHHHHHHHHHHHHHc----CCCC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc--CC--CC
Q 044251 412 --KSYTCLISAYGRPRKMSDMAADAFLRMKRV----GIKP-TSHSYTALIHAYSVGGWHEKAYAAFENMLRE--EI--KP 480 (686)
Q Consensus 412 --~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p 480 (686)
......+..+....+..+.+..++...... +..+ -..++..+...|...|++++|..+++++... +. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 122333444443333347777777766542 2111 2456788899999999999999999988653 11 11
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 481 -SIETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGT----RVTFNILLDGFAKQGQYLEARDVVSEFG 544 (686)
Q Consensus 481 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 544 (686)
...++..++..|...|+++.|..++++.+.. ....+ ...+..+...+...|++++|...|.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2367888899999999999999999988754 11211 3456777777888999999999887764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00012 Score=63.06 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT----LMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
.+...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..... +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 345555566666666666666666666665542 33 4556666666666666666666666666531 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
..+..++...|++++|..+++++++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666667777777777666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00011 Score=61.68 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 044251 522 ILLDGFAKQGQYLEARDVVSEFGKIGLQPTL---MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD----SVTYSTMI 594 (686)
Q Consensus 522 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~li 594 (686)
.+...+...|++++|...|+++.+... .+. ..+..+..+|.+.|++++|...++++... .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 345566777888888888888776542 233 46777778888888888888888888764 333 56677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 595 YAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
.++...|++++|...++++++.. |+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY--PGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCChH
Confidence 88888888888888888887753 55443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.98 E-value=6e-05 Score=66.64 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKI--------G---------LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
.+......+.+.|++++|+..|.+.+.. . -+.+...|..+..+|.+.|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555666666666666666665543 0 0224578888999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 582 NIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 582 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
. +.+...|..+..+|...|++++|+..++++++.. |+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 3 2358889999999999999999999999998754 6543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=5e-05 Score=65.60 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=71.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044251 529 KQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT----------SKLPQLLKEMATLNIKP-DSVTYSTMIYAF 597 (686)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~p-d~~~~~~li~~~ 597 (686)
+.+.+++|...+++..+.. +.+...|..+..++...|++ ++|+..|+++++. .| +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 4455667777777766665 33677777777777666654 4788888887764 55 467788888888
Q ss_pred HHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 598 VRV-----------RDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 598 ~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
... |++++|++.|+++++. .|+...|...+++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 766 4899999999999984 58888887766665
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=84.26 Aligned_cols=126 Identities=8% Similarity=-0.084 Sum_probs=100.3
Q ss_pred hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044251 448 HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGF 527 (686)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 527 (686)
..+..+...+.+.|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..+++.++.. +.+..++..+..+|
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556666788899999999999999885 23457889999999999999999999999999886 56788899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCccHHHHHHH
Q 044251 528 AKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA--YGRGGQTSKLPQLLK 576 (686)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 576 (686)
...|++++|.+.++++.+.. +.+...+..+..+ +.+.|++++|+++++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988765 3355566666666 888899999999988
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9.8e-05 Score=77.82 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIY 595 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~ 595 (686)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+. .| +..++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4677778888888888888888888888776 447888888888888888888888888888864 45 4567777888
Q ss_pred HHHHcCCHHHHH-HHHHHHHH
Q 044251 596 AFVRVRDFKRAF-FYHKQMVK 615 (686)
Q Consensus 596 ~~~~~g~~~~A~-~~~~~m~~ 615 (686)
++.+.|++++|. ..++.|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888887765 44555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.2e-05 Score=65.49 Aligned_cols=134 Identities=16% Similarity=0.043 Sum_probs=99.0
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----C
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEI-KPS----IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE-G----T 516 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~ 516 (686)
..++..+...|...|++++|+..+++...... ..+ ..++..+...+...|++++|...+++.++.... . .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34567777888888999999998888765311 111 146777888888999999999999887754211 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 517 RVTFNILLDGFAKQGQYLEARDVVSEFGKI----GLQ-PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 517 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888889999999999999887643 211 1245678888999999999999999998775
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00029 Score=59.12 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=47.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTR---VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT---LMTYNMLMNAY 562 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 562 (686)
...+...|++++|...++.+++.. +.+. .++..+..++...|++++|...++++.+.. +.+ ...+..+..+|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 334445555555555555555443 1122 344455555556666666666666655443 112 44555566666
Q ss_pred HhcCCccHHHHHHHHHHH
Q 044251 563 GRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 563 ~~~g~~~~A~~l~~~m~~ 580 (686)
...|++++|...|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=74.11 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMI 594 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li 594 (686)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+. .| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34566666666777777777777777766654 335666666777777777777777777776653 33 455556666
Q ss_pred HHHHHcCCHHHHH
Q 044251 595 YAFVRVRDFKRAF 607 (686)
Q Consensus 595 ~~~~~~g~~~~A~ 607 (686)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00015 Score=76.35 Aligned_cols=131 Identities=5% Similarity=-0.004 Sum_probs=102.4
Q ss_pred hhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044251 447 SHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPS--------------IETYTALLDAFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
...|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|+++.|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566777788888888888888888877422111 5788888999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH-HHHHHH
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ-LLKEMA 579 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-l~~~m~ 579 (686)
+.+..+|..+..+|...|++++|...|+++++.. +-+...+..+..++.+.|+.+++.+ +++.|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999998875 3467788889999988888877764 445554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00021 Score=61.84 Aligned_cols=98 Identities=12% Similarity=-0.034 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCccHHHHHHHHHHHC-----C
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQP------TL-----MTYNMLMNAYGRGGQTSKLPQLLKEMATL-----N 582 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 582 (686)
.+......+.+.|++++|+..|++.+...... +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445556666777777777777766543220 22 38888889999999999999999888863 1
Q ss_pred CCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 583 IKPD-SVTY----STMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 583 ~~pd-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
+.|+ ...| .....++...|++++|+..|+++++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2675 6677 89999999999999999999999853
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=63.60 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 044251 516 TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD 586 (686)
Q Consensus 516 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 586 (686)
+..+|..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|...|++.... .|+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 44567777777788888888888888877765 446777888888888888888888888887764 454
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.6e-05 Score=81.59 Aligned_cols=119 Identities=11% Similarity=0.091 Sum_probs=98.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 044251 489 LDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQT 568 (686)
Q Consensus 489 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 568 (686)
...+.+.|++++|.+.+++.++.. +.+..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 345667899999999999999886 6678999999999999999999999999999886 44789999999999999999
Q ss_pred cHHHHHHHHHHHCCCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 044251 569 SKLPQLLKEMATLNIKP-DSVTYSTMIYA--FVRVRDFKRAFFYHK 611 (686)
Q Consensus 569 ~~A~~l~~~m~~~g~~p-d~~~~~~li~~--~~~~g~~~~A~~~~~ 611 (686)
++|++.++++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999875 34 34556666555 888899999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.7e-05 Score=63.73 Aligned_cols=83 Identities=11% Similarity=0.038 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044251 531 GQYLEARDVVSEFGKIG--LQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~ 607 (686)
|++++|+..|++.++.+ -+.+...|..+..+|...|++++|+..|+++.+. .| +..++..+..++...|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 44444455555444432 0112344444555555555555555555555443 22 3444455555555555555555
Q ss_pred HHHHHHHH
Q 044251 608 FYHKQMVK 615 (686)
Q Consensus 608 ~~~~~m~~ 615 (686)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00018 Score=73.33 Aligned_cols=123 Identities=8% Similarity=-0.010 Sum_probs=96.7
Q ss_pred hHhhhHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 449 SYTALIHAYSVGGWHEKAYAAFENMLRE---------------EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
.+..+...+.+.|++++|+..|++.++. ..+.+..+|..+..+|.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3556667777888888888888877651 012244678888889999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
+.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999988775 3477888888888887777666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00056 Score=73.80 Aligned_cols=143 Identities=6% Similarity=-0.041 Sum_probs=88.8
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHhcccCCCCCCHHHHH
Q 044251 171 LELMANDGLL-GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARM----------GDDLMVLFKNLPQSKEFRDAHVYN 239 (686)
Q Consensus 171 ~~~l~~~g~~-~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~ 239 (686)
+..+.+.|.+ ++|++.++.++...|... .+|+....++.+.|+ +++++..++.+.... +.+..+|+
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~nP~~~--taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~ 111 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGANPDFA--TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4444445544 467888888888777554 666666666666655 667777777766633 35667777
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 240 AAISGLFWCG--RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFC 317 (686)
Q Consensus 240 ~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 317 (686)
.-..++.+.| +++++++.++++.+.. +-+..+|+....++...|..++++++.+.++++..+. +...|+.....+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 6666666666 5577777777776653 3455666666666666662266666666666665433 5555555544444
Q ss_pred h
Q 044251 318 D 318 (686)
Q Consensus 318 ~ 318 (686)
+
T Consensus 190 ~ 190 (567)
T 1dce_A 190 Q 190 (567)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.77 E-value=6.5e-05 Score=62.24 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 044251 496 GDTGMMMKIWKLMMSEK--VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQ 573 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 573 (686)
|++++|+..|++.++.+ -+.+..++..+..+|...|++++|...++++.+.. +-+..++..+..+|...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555555554432 12233444555555555555555555555555443 2244555555555555555555555
Q ss_pred HHHHHHH
Q 044251 574 LLKEMAT 580 (686)
Q Consensus 574 l~~~m~~ 580 (686)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.4e-05 Score=75.72 Aligned_cols=95 Identities=12% Similarity=-0.035 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPD-SVTYSTMIYA- 596 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~- 596 (686)
+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+ +.|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 56666677777777777777777776654 33667777777777777777777777777764 3443 4444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 044251 597 FVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~ 616 (686)
....+..+.+..+|++|+..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23445666777777777653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00081 Score=57.45 Aligned_cols=111 Identities=15% Similarity=0.040 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCccHH
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQTSKL 571 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 571 (686)
+++++|...|++..+.+ .+... |...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566777777776666 33333 5555656666777777777777654 66777777777776 6777788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044251 572 PQLLKEMATLNIKPDSVTYSTMIYAFVR----VRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 572 ~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 617 (686)
.++|++..+.| +...+..|...|.. .+++++|+.+++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888877654 56677777777777 778888888888887766
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0008 Score=72.59 Aligned_cols=173 Identities=8% Similarity=-0.021 Sum_probs=104.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044251 425 RKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGW----------HEKAYAAFENMLREEIKPSIETYTALLDAFRR 494 (686)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 494 (686)
+...++|++.++.+....++ +..+|+.--.++...|+ +++++..++.+.+.. +-+..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44456677777777766544 44555555555555555 677777777776642 2355666666666666
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------
Q 044251 495 SG--DTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQG-QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG------ 565 (686)
Q Consensus 495 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 565 (686)
.+ +++++++.++++++.. +-+..+|+.-...+.+.| .++++++.++++++.. +-|...|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 66 5577777777777665 446666666666666666 6667777777666655 23666666666665543
Q ss_pred --------CCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 044251 566 --------GQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 566 --------g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~ 603 (686)
+.+++++++++++... .| |...|..+...+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 3345666666666643 33 455666666665555553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.7e-05 Score=74.40 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
...+..+...+.+.|+++.|...|++.++.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555666666677777777777766543 22111 112233333332221 1378889999
Q ss_pred HHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhhhhc
Q 044251 562 YGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK-SYEKLRSILDVKVATK 639 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l~a~~~~~ 639 (686)
|.+.|++++|+..+++.++. .| +...|..+..+|...|++++|+..|+++++. .|+.. .+..+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~------- 308 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA------- 308 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH-------
Confidence 99999999999999999975 45 6889999999999999999999999998754 35432 222221111
Q ss_pred chhhhHHHHHHHHhcccchhhcccchhHHHHHHHhhCCCCccc
Q 044251 640 NRRDKSAILGIINSKMGMVKAKKKGKKDEFWKYKKRHPRTQSH 682 (686)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~p~~~~~ 682 (686)
....+..++++..|.+|....|+++..
T Consensus 309 ----------------~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 309 ----------------EQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -------------------------------------------
T ss_pred ----------------HHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 012335678888999999999987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00016 Score=76.15 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 234 DAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N-VRPDH-VTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
...+++.|..+|...|++++|..++++..+. | -.|++ .+++.|...|...|+ +++|..++++.++
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~ 421 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH-IEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 4566777777777777777777777665431 2 12332 456777777777777 7777777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0006 Score=58.98 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKI-------GLQPTLMTY----NMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.|+.+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777665 4 2356677 8888888888888888888888874
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00025 Score=74.60 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREE---IKP----SIETYTALLDAFRRSGDTGMMMKIWKLMM 509 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 509 (686)
+...|++++|+.++++.++.. +.+ ...+++.+..+|...|++++|+.++++.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445666666666666654420 111 12344555555555555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=7e-05 Score=61.02 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344445555555555555555555555443 22455555555555555555555555555553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0036 Score=53.30 Aligned_cols=110 Identities=10% Similarity=-0.024 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD----EGLKNEA 325 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A 325 (686)
++++|++.|++..+.| .++.. +..+...+...++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC-----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4555555555555544 22222 2222222223555555555555543 44444555555544 4555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044251 326 LIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKG 371 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 371 (686)
...|+...+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555543 34444555555554 455555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00021 Score=58.08 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHH
Q 044251 482 IETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT------LMTY 555 (686)
Q Consensus 482 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 555 (686)
...+..+...+...|++++|...+++.++.. +.+..++..+..+|...|++++|...+++..+.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3455566666667777777777777776654 4456677777777777777777777777776654 223 4556
Q ss_pred HHHHHHHHhcCCccHHHHHHH
Q 044251 556 NMLMNAYGRGGQTSKLPQLLK 576 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~ 576 (686)
..+..++...|+.++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 666666666666666555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0003 Score=60.72 Aligned_cols=97 Identities=13% Similarity=-0.033 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 494 RSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQ----------YLEARDVVSEFGKIGLQPTLMTYNMLMNAYG 563 (686)
Q Consensus 494 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 563 (686)
+.+.+++|.+.++..++.. +.+...|+.+..++...++ +++|+..|++.++.. +.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3344555555555555544 4455555555555554443 468888888888776 337778888888888
Q ss_pred hcC-----------CccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 564 RGG-----------QTSKLPQLLKEMATLNIKPDSVTYSTMI 594 (686)
Q Consensus 564 ~~g-----------~~~~A~~l~~~m~~~g~~pd~~~~~~li 594 (686)
..| ++++|++.|+++++ +.|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 764 78999999999987 477755554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00089 Score=54.88 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 536 ARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 536 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
|...|+++.+.. +.+...|..+..+|...|++++|+..|+++.... +.+...|..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 2355566666666666666666666666665432 12355566666666666666666666666654
Q ss_pred C
Q 044251 616 S 616 (686)
Q Consensus 616 ~ 616 (686)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0014 Score=53.67 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 044251 500 MMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMA 579 (686)
Q Consensus 500 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 579 (686)
.+...++..++.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778888888776 6678899999999999999999999999998876 4478899999999999999999999999988
Q ss_pred HC
Q 044251 580 TL 581 (686)
Q Consensus 580 ~~ 581 (686)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.002 Score=49.77 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444332 22344444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0026 Score=49.11 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 483 ETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAY 562 (686)
Q Consensus 483 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 562 (686)
..+..+...+...|++++|...+++.++.. +.+..++..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555566666666666666666666554 3455666666667777777777777777766554 33556666666555
Q ss_pred Hhc
Q 044251 563 GRG 565 (686)
Q Consensus 563 ~~~ 565 (686)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0016 Score=51.81 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG-QVPDVKSYEKL 628 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l 628 (686)
+...|..+..+|...|++++|+..|+++.+. .| +...|..+..+|...|++++|+..++++++.. -.++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 5667777777777777777777777777764 33 46677777777777888888887777776531 12344444444
Q ss_pred HHHH
Q 044251 629 RSIL 632 (686)
Q Consensus 629 ~~~l 632 (686)
..++
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0086 Score=59.35 Aligned_cols=80 Identities=10% Similarity=-0.020 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKL 628 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 628 (686)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++++.. .|...+|.-+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5588899999888888899999999999999864 88888888889999999999999999999985 4888887666
Q ss_pred HHHH
Q 044251 629 RSIL 632 (686)
Q Consensus 629 ~~~l 632 (686)
-++.
T Consensus 350 ~~l~ 353 (372)
T 3ly7_A 350 ENGI 353 (372)
T ss_dssp HHSS
T ss_pred hCce
Confidence 5543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0032 Score=50.08 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+.+..++..+...|...|++++|+..|+++.+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666677777777777777777777776655 33566677777777777777777777776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.017 Score=49.20 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 044251 532 QYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG---QTSKLPQLLKEMATLNIKP--DSVTYSTMIYAFVRVRDFKRA 606 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A 606 (686)
.+..+.+-|.+....+ .++..+...+.+++++.+ +.++++.+|++..+.. .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456677777776666 478999999999999988 6669999999998864 35 356677777899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhh
Q 044251 607 FFYHKQMVKSGQVPDVKSYEKLRSILDVKV 636 (686)
Q Consensus 607 ~~~~~~m~~~g~~p~~~~~~~l~~~l~a~~ 636 (686)
+++++.+++ +.|+..-...+.+..+...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHHHHHHH
Confidence 999999998 5588776666666664433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.05 Score=53.90 Aligned_cols=141 Identities=11% Similarity=0.096 Sum_probs=93.0
Q ss_pred ChhhHhhhHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH---cC--CHHH---HHHHHHHHHh-
Q 044251 446 TSHSYTALIHAYS--VGG---WHEKAYAAFENMLREEIKPSI-ETYTALLDAFRR---SG--DTGM---MMKIWKLMMS- 510 (686)
Q Consensus 446 ~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~g--~~~~---a~~~~~~~~~- 510 (686)
+...|...+.+.. ..+ ...+|..+|++.++. .|+. ..|..+..+|.. .+ .... ....+.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5556665554432 222 346788888888773 4543 444433333321 11 1111 1112222111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 511 EKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 511 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
...+.+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 1236688888888888888899999999999999875 7888888999999999999999999999986 47877765
Q ss_pred HH
Q 044251 591 ST 592 (686)
Q Consensus 591 ~~ 592 (686)
.-
T Consensus 347 ~~ 348 (372)
T 3ly7_A 347 YW 348 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0047 Score=63.89 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=52.1
Q ss_pred HccCChhHHHHHHHhcccC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHH
Q 044251 211 GRARMGDDLMVLFKNLPQS-------KEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N-VRPDH-VTCSIM 276 (686)
Q Consensus 211 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~l 276 (686)
.+.|++++|+.++++.... ..+....+++.|+.+|...|++++|+.++++.... | -.|++ .+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3455666666655544321 11123456777777777777777777777665421 2 12332 456667
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 044251 277 ITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 277 l~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
...|...|+ +++|+.+++++++
T Consensus 378 a~~~~~~g~-~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGM-FPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCC-HHHHHHHHHHHHH
Confidence 777777777 7777777777664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0095 Score=61.52 Aligned_cols=86 Identities=5% Similarity=-0.109 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 044251 530 QGQYLEARDVVSEFGKI---GLQP----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL-----N-IKPD-SVTYSTMIY 595 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd-~~~~~~li~ 595 (686)
.|++++|+.++++.++. -+.| ...+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888887776532 1122 2467888888888888888888888887642 2 1233 456888999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 044251 596 AFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 596 ~~~~~g~~~~A~~~~~~m~~ 615 (686)
+|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.02 Score=59.10 Aligned_cols=109 Identities=11% Similarity=0.003 Sum_probs=74.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC-----C-CCCC-HHH
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIG---LQP----TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL-----N-IKPD-SVT 589 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~---~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd-~~~ 589 (686)
+..+...|++++|+.++++.++.. +.| ...+++.|+.+|...|++++|+.++++++.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888876431 122 2467888888888899999999888887642 2 1232 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKS---GQVPDVKSYEKLRSIL 632 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~l 632 (686)
++.|...|...|++++|..+++++++- -+-||......+.+.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 888889999999999999998887642 1225554444443333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0049 Score=63.63 Aligned_cols=86 Identities=7% Similarity=-0.027 Sum_probs=51.7
Q ss_pred cCChhHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHH
Q 044251 213 ARMGDDLMVLFKNLPQ-------SKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEAN-----N-VRPDH-VTCSIMIT 278 (686)
Q Consensus 213 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~ll~ 278 (686)
.|++++|+.++++... ...+....+++.|..+|...|++++|+.++++..+. | -.|++ .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3555555555543322 112123566777777777777777777777766431 2 12333 45677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 044251 279 AMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 279 ~~~~~g~~~~~a~~~~~~m~~ 299 (686)
.|...|+ +++|..+|+++++
T Consensus 391 ~~~~qg~-~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLEN-KAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHhccC-HHHHHHHHHHHHH
Confidence 7777777 7777777777765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0092 Score=46.94 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLM-TYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+...|++++|...++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555544433 22344 444455555555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.021 Score=45.61 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHH
Q 044251 161 RVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNA 240 (686)
Q Consensus 161 ~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 240 (686)
.++..+|..+...+.+.|++..|...|+.++...+.... .......++..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------------------------~~~~~~~i~~~ 51 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------------------------STIDKVSVLDY 51 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------------------------CSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------------------------CcccHHHHHHH
Confidence 368889999999999999999999999888765211100 01134455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEAN 264 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~ 264 (686)
+..++.+.|++++|+..+++..+.
T Consensus 52 L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 52 LSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc
Confidence 666666666666666666666543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.11 Score=40.38 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 549 QPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
+.|+..+..+..++...++ .++|..++++.++. .| +......+...+.+.|++++|+.+|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777764444 68888888888864 45 57777888888888888888888888888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.085 Score=41.11 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKVEGTRV-TFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+...|++++|...++++++.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555443 33344 4555555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.21 Score=56.36 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=96.2
Q ss_pred HHHHHhcCChhHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 171 LELMANDGLLGCCLY-FYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
.......+++++|.+ ++..+. +......++..+.+.|.+++|+++.+.-. .-.......|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcC
Confidence 444456788888866 441111 02334667777788888888887653211 1133456788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|+++.+.+ .+...|..+...+.+.++ ++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~-~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFN-FKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCC-HHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 888888875442 456788888888888888 8888888887643 334445555566666655555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEM 367 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (686)
+.....|. ++....+|.+.|++++|++++.++
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55554431 233344455666666666666544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.37 Score=54.33 Aligned_cols=107 Identities=7% Similarity=-0.049 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
......++..+...|.+++|+++.+... .-.......|++++|.++.+.+ .+...|..+..
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~ 689 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGD 689 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHH
Confidence 5555777888888999888887663211 1233456789999999997765 56789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
.+.+.|+++.|.+.|..+.. |..+...+...++ .+...++.+....
T Consensus 690 ~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~-~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 690 ASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN-KEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC-HHHHHHHHHHHHH
Confidence 99999999999999998864 3444555555555 5544444444333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.058 Score=41.91 Aligned_cols=67 Identities=4% Similarity=-0.161 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 514 EGTRVTFNILLDGFAKQGQ---YLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
+.+...+..+..++...++ .++|..++++.++.. +-++..+..+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666654443 577777777777665 336677777777777777777777777777754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.13 Score=42.08 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=73.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcC
Q 044251 527 FAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSK---LPQLLKEMATLNIKP--DSVTYSTMIYAFVRVR 601 (686)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p--d~~~~~~li~~~~~~g 601 (686)
......+..+.+-|.+....| .++..+--.+.+++.+..+... ++.++++....+ .| .......|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 333445566667777666656 4788888889999999887666 888999888753 24 2344556667899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 602 DFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 602 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++++|+++++.+++ +.|+..-...|....
T Consensus 89 ~Y~~A~~~~~~lL~--~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 89 EYEKALKYVRGLLQ--TEPQNNQAKELERLI 117 (126)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999998 458765555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.22 E-value=1.4 Score=38.39 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=60.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 171 LELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 171 ~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
+......|+++.|+++.+.+ .+...|..++....+.|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 45555667777777766554 2346677777777777777777777776655 5556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFE 295 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 295 (686)
.++-.++-+.....| -++.....+...|+ ++++.++|.
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGd-v~~~i~lL~ 113 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNS-TKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCC-HHHHHHHHH
Confidence 666555554444443 13444444445555 666665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=1.5 Score=41.69 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 044251 252 DDAWKAYEAMEANNVRPD---HVTCSIMITAMRKN-----GRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE-GLK 322 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 322 (686)
..|..++++..+. .|+ -..|..+...|... |+ .++|.++|++.++.+..-+..++......++.. |+.
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4455555555554 454 34566666666553 44 666666666666654332355555556666653 666
Q ss_pred HHHHHHHHHHHHCCCC
Q 044251 323 NEALIIQMEMEKKGIP 338 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~ 338 (686)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.079 Score=50.29 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcc-----CChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc-CCHHH
Q 044251 180 LGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRA-----RMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWC-GRYDD 253 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~ 253 (686)
...|...++++++.+|...+..+|..++..|.+. |+.++|.+.|++..+..+..+..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3566777777777777655556777777777763 67777777777666544323466666666666663 66777
Q ss_pred HHHHHHHHHhCCCC
Q 044251 254 AWKAYEAMEANNVR 267 (686)
Q Consensus 254 A~~~~~~m~~~g~~ 267 (686)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777776665433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.18 Score=40.04 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 551 TLMTYNMLMNAYGRGGQTSKLPQLLKEMATLN------IKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 551 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+..-.-.|+..+.+.|++..|...|+++.+.- -.+...++..|..++.+.|+++.|+.+++++++. .|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 33444556666677777777777776665421 1224567777777888888888888888877763 35543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.77 Score=40.03 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
.+.|+++.|.++.+++ .+...|..|.......|+++-|++.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555554444332 23444555555545555555554444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.23 Score=42.20 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSN---QLEEAEGLFQEMKTKGLKP--TSATFNILMDAYSRRMQPEIVEK 397 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~ 397 (686)
..+.+.|.+..+.|. ++..+...+..++++.+ ++++++.+|+++.+.. .| ....+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555555444 46666666666777666 5556777777766653 12 23344446666677777777777
Q ss_pred HHHHHHHc
Q 044251 398 LLLELQDM 405 (686)
Q Consensus 398 ~~~~m~~~ 405 (686)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=2 Score=35.26 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=96.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 536 (686)
+.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-.. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 34567778888888777663 34555666665555555656666665555332 11 1345666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
...+-.+ ..+....+..+..+...|+-+.-.+++..+.. +-+|++.....+..||.+.|+..+|-+++.++-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6555543 22556677788888899999999898888644 35778889999999999999999999999999888
Q ss_pred CC
Q 044251 617 GQ 618 (686)
Q Consensus 617 g~ 618 (686)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 85
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=2.1 Score=35.10 Aligned_cols=66 Identities=23% Similarity=0.137 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCC
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIK 584 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 584 (686)
...+..++.+...|+.+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34444555566666666666666664332 2556666666666666666666666666666666643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.25 E-value=2.6 Score=35.37 Aligned_cols=112 Identities=7% Similarity=0.126 Sum_probs=57.4
Q ss_pred ChhhHhhhHHHHHhcCCH------HHHHHHHHHHHHcCCCCCH----HHHHHHHH---HHHHcCCHHHHHHHHHHHHhcC
Q 044251 446 TSHSYTALIHAYSVGGWH------EKAYAAFENMLREEIKPSI----ETYTALLD---AFRRSGDTGMMMKIWKLMMSEK 512 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~----~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 512 (686)
|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|-.+.- .+...++.+.|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5666666666654 44432 11111110 1123356666777777666553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 513 VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMN 560 (686)
Q Consensus 513 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 560 (686)
-. -..+|-.....-.+.|++..|.+++.+.+..+.+ +...+...+.
T Consensus 91 Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 91 KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 22 2566666666666677777777777776666533 3333443333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.17 E-value=0.75 Score=38.58 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044251 566 GQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILD 633 (686)
Q Consensus 566 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 633 (686)
++.++|.++|+.++..+ +-=..+|.....-=.+.|+.+.|.+++.+++..+.. +..+.+..++-+.
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl~ 139 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNLN 139 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhhh
Confidence 56666777776665431 111455555555556777777777777777765532 4456666666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.86 Score=49.98 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CH
Q 044251 237 VYNAAISGLFWCGR-YDDAWKAYEAMEANNVRPDHVTC--SIMITAMRKNGRSAKEAWEFFEKMNRK------GVKL-SQ 306 (686)
Q Consensus 237 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~~a~~~~~~m~~~------~~~~-~~ 306 (686)
....++..+...|+ ++.|..+|+++... .|....+ ..++..+...+..--+|.+++.+.++. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34455555555666 58899999999876 4543332 223333322222134566666655431 1111 11
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044251 307 ----------EVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMK 368 (686)
Q Consensus 307 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (686)
.....=.+.|...|+++.|+.+-++.+.. .|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222345677889999999999999887 45578999999999999999999999988773
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.05 E-value=14 Score=37.06 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhH----
Q 044251 379 FNILMDAYSRRMQPEIVEKLLLELQDM-GLEP---NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSY---- 450 (686)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 450 (686)
...|...|.+.|+.++..+++...... +..+ .......++..+....+..+.-.++.....+..-. +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344566666666666666665554321 0011 22334555666655444434444444444332110 11222
Q ss_pred --hhhHHHHHhcCCHHHHHHHHHHHHHcC--CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHH
Q 044251 451 --TALIHAYSVGGWHEKAYAAFENMLREE--IKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEGTRVTFN 521 (686)
Q Consensus 451 --~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~ 521 (686)
..++..|...|++.+|..++.++.+.- .... ...+...++.|...+++..+...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 367889999999999999999987741 1112 245667778899999999999999887654 2223333322
Q ss_pred ----HHHHHHH-HcCCHHHHHHHHHHHHh-CCC--CC---CHHHHHHHHHHHHhcCCccHHHHHHH-HHHHCCCCCCHHH
Q 044251 522 ----ILLDGFA-KQGQYLEARDVVSEFGK-IGL--QP---TLMTYNMLMNAYGRGGQTSKLPQLLK-EMATLNIKPDSVT 589 (686)
Q Consensus 522 ----~li~~~~-~~g~~~~A~~~~~~~~~-~~~--~p---~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~pd~~~ 589 (686)
.-...+. ..+++..|...|-+..+ ..- .| +...|..|... -.++..+.-.++. +....-..|+...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhccccccccCCccHHH
Confidence 2233455 68999999988776542 110 11 12233222222 2233334433332 2111112455556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044251 590 YSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLR 629 (686)
Q Consensus 590 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 629 (686)
+..++.+| ..+++.+...+++.... .+..|+....++-
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~ 296 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLG 296 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHH
Confidence 66777665 56888877777766432 3556775444333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.80 E-value=1.9 Score=35.08 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=62.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhH---HHHHHHhcccCCCC-CCHHHHHHHHHHHHHcCCH
Q 044251 176 NDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDD---LMVLFKNLPQSKEF-RDAHVYNAAISGLFWCGRY 251 (686)
Q Consensus 176 ~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 251 (686)
....+..+.+.|......++ ++..+-..++-++.+.++... .+.+++.+...+.+ ......-.|..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 33344555556666655433 566777777888888777665 88888887774422 2445566677889999999
Q ss_pred HHHHHHHHHHHhCCCCCCH
Q 044251 252 DDAWKAYEAMEANNVRPDH 270 (686)
Q Consensus 252 ~~A~~~~~~m~~~g~~p~~ 270 (686)
++|++.++.+.+. .|+.
T Consensus 91 ~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHh--CCCC
Confidence 9999999998876 5653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.78 E-value=12 Score=36.00 Aligned_cols=129 Identities=9% Similarity=0.002 Sum_probs=74.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
-+..-+..|++=+|.+.++-+..+ |.+++++++|+.++... ...+.+.|
T Consensus 19 rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g---------------a~~ll~~~ 67 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG---------------ALSFLKAK 67 (312)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH---------------HHHHHHTT
T ss_pred HHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH---------------HHHHHHCC
Confidence 366667778877777766655433 45778888888776543 23455667
Q ss_pred CHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhc
Q 044251 250 RYDDAWK----AYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN----RKG--VKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 250 ~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~ 319 (686)
+...|-+ +.+-+.+.+++++......++..+.........-.+++++++ +.| ...++..+..+...|.+.
T Consensus 68 Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 68 QGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 7665554 345556667777777777777666543221111122333332 222 223566666677777777
Q ss_pred CCHHHHHHHH
Q 044251 320 GLKNEALIIQ 329 (686)
Q Consensus 320 g~~~~A~~~~ 329 (686)
|++.+|..-|
T Consensus 148 ~~~~~A~~H~ 157 (312)
T 2wpv_A 148 DFVYEAERYF 157 (312)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7776666544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.67 E-value=25 Score=39.44 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH---------HhcCC--C--CCCHHHHHHHHHHHHccCCh--------hHHHHHHHh
Q 044251 167 CVQLLELMANDGLLGCCLYFYEWM---------RLQEP--S--LVSPRACSVLFPVLGRARMG--------DDLMVLFKN 225 (686)
Q Consensus 167 ~~~l~~~l~~~g~~~~Al~~~~~~---------~~~~~--~--~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~ 225 (686)
...++..+.+.|.+.+|+.+.-.+ ..... . ....+.+..++.+....-.. ..+..+|.+
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k 227 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN 227 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Confidence 445566666777777776544332 22100 0 01123444444443322222 235555555
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 226 LPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEA 263 (686)
Q Consensus 226 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 263 (686)
+.. |+ |..++.++.+.++.+.+.++|..+..
T Consensus 228 ~~~----~d---y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 228 MPN----CD---YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp SSS----CC---HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCc----hh---HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 532 22 66677777788888888888888764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.42 E-value=26 Score=39.27 Aligned_cols=265 Identities=7% Similarity=-0.064 Sum_probs=136.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHHH
Q 044251 350 AYCKSNQLEEAEGLFQEMKTKGLKPTSA--TFNILMDAYSRRMQPEIVEKLLLELQDMGL--E-----PNAKSYTCLISA 420 (686)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 420 (686)
+....|+.++++.++......+-..+.. .-..+.-+....|..+++..++.......- . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455677777777766544321011222 222233334445554567776666554311 0 111112222222
Q ss_pred hcCCCChHHHHHHHHHHHHHcCCCCChh----hHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGIKPTSH----SYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAF--RR 494 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~ 494 (686)
+.-.|...+++.+.+..+.... +.. .--+|...++..|+.+....++..+.+. .+......+..++ ..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 2222222255666666665532 211 1123333455677777777777776653 2333333344443 46
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHH
Q 044251 495 SGDTGMMMKIWKLMMSEKVEGTRVTFN--ILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 495 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 572 (686)
.|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+.. ..++.-...+.-++.-.|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888877643 23322222 23345667788777777888877532 223333344444555577777778
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHH
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDF-KRAFFYHKQMVKSGQVPDVKSYE 626 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~ 626 (686)
+++..+.+.+ .|...--..+.-+....|+. .+|+.++..+.. .+|..+-.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 8877666543 34333333333344444444 578888888864 35555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=5.2 Score=40.32 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHccCChh-HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 044251 174 MANDGLLGCCLYFYEWMRLQE--PSLVSPRACSVLFPVLGRARMGD-DLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGR 250 (686)
Q Consensus 174 l~~~g~~~~Al~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 250 (686)
....|+.++|...++.++..- +...+.. ...+- .....+++. -..+...++..+...|+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~-------~~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED-------KVLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC
Confidence 345688889999999888762 2221100 01111 111222221 12245567778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 044251 251 YDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR-----KGVKLSQEVV 309 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~~ 309 (686)
+++|+..+..+.... +-+...|..++.++...|+ ..+|++.|+++.+ .|+.|...+-
T Consensus 187 ~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 187 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 888888888876653 4577788888888888888 8888888887654 3677665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.32 E-value=7 Score=32.47 Aligned_cols=83 Identities=8% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQT---SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSY 625 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 625 (686)
.|+..+--.+.+++.+..+. .+++.++++....+-.-.......|.-++.+.|++++|+++.+.+++ +.|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 67888888888999987764 46888999888743211244455666799999999999999999998 45887666
Q ss_pred HHHHHHHH
Q 044251 626 EKLRSILD 633 (686)
Q Consensus 626 ~~l~~~l~ 633 (686)
..|....+
T Consensus 114 ~~Lk~~Ie 121 (144)
T 1y8m_A 114 GALKSMVE 121 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=1.5 Score=44.28 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 044251 556 NMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVK-----SGQVPDVKSYEKLRS 630 (686)
Q Consensus 556 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~~ 630 (686)
..++.++...|++++|+..+..+.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344555566666666666666665431 22556666666666666666666666665432 266666665555544
Q ss_pred HH
Q 044251 631 IL 632 (686)
Q Consensus 631 ~l 632 (686)
++
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.61 E-value=4 Score=33.43 Aligned_cols=85 Identities=9% Similarity=0.077 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044251 547 GLQPTLMTYNMLMNAYGRGGQT---SKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVK 623 (686)
Q Consensus 547 ~~~p~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 623 (686)
+-.|+..+--.+.+++.+..+. .+++.++++....+-.-....+-.|.-++.+.|++++|+++.+.+++ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3367888888888899887754 46888898888754111255566777799999999999999999987 568877
Q ss_pred HHHHHHHHHH
Q 044251 624 SYEKLRSILD 633 (686)
Q Consensus 624 ~~~~l~~~l~ 633 (686)
-...|....+
T Consensus 113 QA~~Lk~~Ie 122 (134)
T 3o48_A 113 QVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.52 E-value=17 Score=37.31 Aligned_cols=268 Identities=11% Similarity=0.092 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 320 GLKNEALIIQMEMEKK-----GIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 320 g~~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
|+++.|.+.+-.+.+. ...........++..|.+.|+++...+.+..+....-. .......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH--------
Confidence 6677777766655542 23335666777788888888888777776655543211 111222222221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHH
Q 044251 395 VEKLLLELQDMGLEPNAKSYTCLISAYGR--PRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFEN 472 (686)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (686)
..++... ..++..+...++..... .|+.. -+.. .......|...|...|++.+|..++..
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vte~kif-------lE~e------rarl~~~La~i~e~~g~~~eA~~iL~~ 162 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVTENKIF-------VEVE------RARVTKDLVEIKKEEGKIDEAADILCE 162 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSSSCCCC-------CCHH------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHhccchH-------HHHH------HHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1222221 12233334334433221 11110 0000 112334577889999999999999999
Q ss_pred HHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 044251 473 MLRE--EIKPS---IETYTALLDAFRRSGDTGMMMKIWKLMMSE----KVEGT--RVTFNILLDGFAKQGQYLEARDVVS 541 (686)
Q Consensus 473 m~~~--~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 541 (686)
+... +.... ...+...++.|...+++..|..++.++... ..+|+ ...+...+..+...+++.+|...|.
T Consensus 163 l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 163 LQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8653 22222 256777788999999999999999987532 22222 3456777888888999999999888
Q ss_pred HHHhC-CCCCCHHHHH----HHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 044251 542 EFGKI-GLQPTLMTYN----MLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV--RDFKRAFFYHKQMV 614 (686)
Q Consensus 542 ~~~~~-~~~p~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 614 (686)
++... ...-|...+. .++.+..-.+....--.++........-++...|..++.+|... .+++.+.+.|+..+
T Consensus 243 e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 243 EIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 86531 1112333222 22222223333333334444333222234677888899888654 45677766665544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.73 E-value=18 Score=35.06 Aligned_cols=184 Identities=10% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHHHhcCCh---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 171 LELMANDGLL---GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 171 ~~~l~~~g~~---~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
+..-+..|+| =+|.+.++-+.. =|.+++++++|+.++-.. ...+.+
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~~----------------Ry~~~k~y~eAidLL~~G---------------A~~ll~ 67 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVAA----------------RYSKQGNWAAAVDILASV---------------SQTLLR 67 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHhCCCCccccHHHHHHHHHHH----------------HHHhhcCHHHHHHHHHHH---------------HHHHHH
Confidence 5666778888 677666655543 356788999988876542 334556
Q ss_pred cCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHH
Q 044251 248 CGRYDDAWKAY----EAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR----KG--VKLSQEVVGALMKSFC 317 (686)
Q Consensus 248 ~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~----~~--~~~~~~~~~~li~~~~ 317 (686)
.|+...|-++- +-+.+.++++|......++..+.........=..+++++++ .| ...++.....+...|.
T Consensus 68 ~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 68 SGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 67766554443 55556677788877777777776554311122333333332 22 4457888899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044251 318 DEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEK 397 (686)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 397 (686)
+.+++.+|..-|- .|-.+.+..+..++.-+...+...+ ++...-..++ -|...++...|..
T Consensus 148 ~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~ 208 (336)
T 3lpz_A 148 EEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANT 208 (336)
T ss_dssp HTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHH
T ss_pred ccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHH
Confidence 9999999887762 2333344566555544444333111 1222222233 2345677888877
Q ss_pred HHHHHHH
Q 044251 398 LLLELQD 404 (686)
Q Consensus 398 ~~~~m~~ 404 (686)
++....+
T Consensus 209 ~~~~f~~ 215 (336)
T 3lpz_A 209 AYRIFTS 215 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.45 E-value=2.8 Score=45.96 Aligned_cols=129 Identities=10% Similarity=-0.034 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc------CCCC-Ch---
Q 044251 379 FNILMDAYSRRMQ-PEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV------GIKP-TS--- 447 (686)
Q Consensus 379 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~--- 447 (686)
...++..+...++ .+.|..+++++......-+......++..+...+...-+|..++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555655 57788899888776433233333444555444433323456655554421 1111 11
Q ss_pred -------hhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044251 448 -------HSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLM 508 (686)
Q Consensus 448 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 508 (686)
.....-...|...|+++-|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234456678888888888877764 3345678888888888888888888777765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.82 E-value=29 Score=40.58 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=109.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044251 202 ACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMR 281 (686)
Q Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 281 (686)
....++..+.+.+.++.+..+..-.. .+....-.+..+|...|++++|.+.|.+.-. |+..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~-------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh--------
Confidence 34456666778888888887665544 3555556788899999999999999987532 222211000
Q ss_pred HcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 044251 282 KNGRSAKEAWEFFEKMNRKG--VKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNA----IVYNTLINAYCKSN 355 (686)
Q Consensus 282 ~~g~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 355 (686)
.. ... +..+.... ...-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|
T Consensus 880 --~~-~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 --AV-LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp --SS-HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred --hh-hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 00 111 11111111 1223456777888888889888888887776654322222 26788889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044251 356 QLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEI 394 (686)
Q Consensus 356 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 394 (686)
++++|...+-.+..... -......|+..+|..|..+.
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99999999988877644 34567777777777776544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.97 E-value=12 Score=37.46 Aligned_cols=67 Identities=10% Similarity=-0.073 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH
Q 044251 557 MLMNAYGRGGQTSKLPQLLKEMATLNIKPD-----SVTYSTMIYAFVRVRDFKRAFFYHKQMVKS--GQVPDVK 623 (686)
Q Consensus 557 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ 623 (686)
-|+..|...|++.+|.+++.++.+.=-+.| ..+|..-+..|...|++.++..++..+... .+.+++.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 477788888888888888887775211111 345666677888889999999888877644 2335554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.91 E-value=22 Score=41.67 Aligned_cols=149 Identities=7% Similarity=-0.013 Sum_probs=100.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C---------------
Q 044251 452 ALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE----K--------------- 512 (686)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--------------- 512 (686)
.++..+...+..+.+.++..- .+.+......+..+|...|++++|..+|.+.-.. .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455566667777666554332 3345555566777888899999999999765311 0
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC
Q 044251 513 ---VEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTL----MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP 585 (686)
Q Consensus 513 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 585 (686)
...-..-|..++..+.+.+.++.+.++-+..++.....+. ..|..+.+++...|++++|...+-.+-....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 0111234677888888889999998888776654322222 25788889999999999999999888765443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 044251 586 DSVTYSTMIYAFVRVRDFKRAF 607 (686)
Q Consensus 586 d~~~~~~li~~~~~~g~~~~A~ 607 (686)
...+..|+..++..|..+.-.
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhh
Confidence 456777888888777755443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.28 E-value=4.2 Score=31.33 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 55666677777788899999999999999999999999999877654 224456677776665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=81.94 E-value=0.0012 Score=66.71 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHH
Q 044251 163 SKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAI 242 (686)
Q Consensus 163 ~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 242 (686)
.++.|..+..+..+.+++.+|++-|= -..++..|..++.+..+.|.+++.++.+.-..+. ..++.+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 55666666777777777666654321 1123355667777777777777777666544432 23444555677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044251 243 SGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLK 322 (686)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 322 (686)
-+|++.++..+-.++ .. .|++.-...+..-|...|. ++.|.-+|..+.. |..|...+.+.|++
T Consensus 124 ~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~l-YeAAKilys~isN---------~akLAstLV~L~~y 186 (624)
T 3lvg_A 124 FALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNVSN---------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCC-STTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred HHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccC-HHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence 777777765543222 11 3555555556666666665 5555555543321 11122222233333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 323 NEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 323 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
..|.+.- .+ ..++.||-.+-.+|...+.+.-|.-.--.+.-.. | -...++..|-..|.+++.+.+++.-
T Consensus 187 q~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3332211 11 1244556666666666555554433322222110 1 0112344445555555555555554
Q ss_pred HHcCCCCCHHHHHHHHHHhcCC
Q 044251 403 QDMGLEPNAKSYTCLISAYGRP 424 (686)
Q Consensus 403 ~~~~~~p~~~~~~~ll~~~~~~ 424 (686)
.... ......|+-|.-.|++-
T Consensus 256 lglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSS
T ss_pred hCCC-chhHHHHHHHHHHHHhc
Confidence 4211 23444555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.73 E-value=60 Score=34.75 Aligned_cols=94 Identities=12% Similarity=0.155 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
..-..-+..+++.+++...+..+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 3444555667777777777665443 13577777777788888888877877777775554 33344677777777
Q ss_pred HHcCC-CHHHHHHHHHHHHHC
Q 044251 281 RKNGR-SAKEAWEFFEKMNRK 300 (686)
Q Consensus 281 ~~~g~-~~~~a~~~~~~m~~~ 300 (686)
.+.|. ..+..++-++.+...
T Consensus 147 ~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 147 RASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHTTCSCHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHC
Confidence 76554 123344444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.71 E-value=12 Score=30.59 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHccCCh---hHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 198 VSPRACSVLFPVLGRARMG---DDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 198 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
+++.+--..+-++.+..+. .+++.+++.+...+.......+-.|..++.+.|++++|++..+.+.+. .|+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 4445555555555555544 346777776665443234566667778888888888888888888876 56543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 686 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 9e-05
Identities = 32/321 (9%), Positives = 89/321 (27%), Gaps = 11/321 (3%)
Query: 179 LLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVY 238
+ + P + D+ + + ++
Sbjct: 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 239 NAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMN 298
+ G ++A +P+ + + A FEK
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196
Query: 299 RKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLE 358
+ L + + + A+ + +A+V+ L Y + ++
Sbjct: 197 TLDPNFL-DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLID 254
Query: 359 EAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLI 418
A ++ A N+ A + + + + E + L P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNL---ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 419 SAYGRPRKMSDMAADAFLRMKRVGIKPTSH-SYTALIHAYSVGGWHEKAYAAFENMLREE 477
+ R + + A + + + + P +++ L G ++A ++ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--R 367
Query: 478 IKPSI-ETYTALLDAFRRSGD 497
I P+ + Y+ + + + D
Sbjct: 368 ISPTFADAYSNMGNTLKEMQD 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 686 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.34 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.86 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.69 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.68 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.26 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.22 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.45 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.01 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.91 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.86 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.02 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-20 Score=193.71 Aligned_cols=383 Identities=15% Similarity=0.050 Sum_probs=257.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 044251 170 LLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCG 249 (686)
Q Consensus 170 l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (686)
++..+.+.|++++|++.|+.+++..|. ++.++..++.++.+.|++++|+..|+++.... +.+..+|..++.+|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 466777888999999999988888764 35778888888888888888888888876643 356778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044251 250 RYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQ 329 (686)
Q Consensus 250 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (686)
++++|++.+....... +.+...+............ ...+............ ................+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGD-MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSC-SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccchhhhhHHHH
Confidence 8888888888877653 2333333333333333333 3333333333333222 23333334444445555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 330 MEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEP 409 (686)
Q Consensus 330 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 409 (686)
....... +.+...+..+...+...|++++|...++...+.... +...|..+..++...|++++
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~--------------- 221 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDR--------------- 221 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTH---------------
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHH---------------
Confidence 5554442 224455555555555556666665555555443221 33344444444444444444
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044251 410 NAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALL 489 (686)
Q Consensus 410 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 489 (686)
|...+......... +...+..+...+.+.|++++|+..|++..+. .+-+..++..+.
T Consensus 222 ---------------------A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~ 278 (388)
T d1w3ba_ 222 ---------------------AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLA 278 (388)
T ss_dssp ---------------------HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHH
T ss_pred ---------------------HHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 55555544444322 4455666777778888888888888888774 233567788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 044251 490 DAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTS 569 (686)
Q Consensus 490 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 569 (686)
..+...|++++|...++...... +.+...+..+...+...|++++|+..+++.++.. +-+..+|..+..+|.+.|+++
T Consensus 279 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 356 (388)
T d1w3ba_ 279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888887765 6677888888888888999999999999887765 336788888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 044251 570 KLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~ 602 (686)
+|...|+++.+ +.| +..+|..++.+|.+.||
T Consensus 357 ~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 357 EALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 99999999886 466 47788899998888875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.3e-20 Score=188.24 Aligned_cols=379 Identities=12% Similarity=0.091 Sum_probs=280.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEG 320 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 320 (686)
+...+.+.|++++|++.|+++.+.. +-+...+..+...+...|+ +++|...|+++++..+. +..++..+...+.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 3445556667777777666665542 2245556666666666666 67777777766665422 4566666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLL 400 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 400 (686)
++++|...+....+... .+...+..........+....+............. ...............+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHH
Confidence 77777777777766533 24455555555555556655655555555444333 33344445555666677777777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 401 ELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP 480 (686)
Q Consensus 401 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 480 (686)
...... .-+...+..+...+...+.. +.|...++...+..+. +...|..+...+...|++++|+..+++..... +.
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEI-WLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HhhccC-cchhHHHHhhcccccccCcH-HHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 665543 22455556666666666565 7788888877776543 56788889999999999999999999998863 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044251 481 SIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMN 560 (686)
Q Consensus 481 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 560 (686)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 67788889999999999999999999999876 6678899999999999999999999999988765 568899999999
Q ss_pred HHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 044251 561 AYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPD-VKSYEKLRSILDV 634 (686)
Q Consensus 561 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~l~a 634 (686)
++...|++++|++.++++.+. .| +..++..+..+|...|++++|+..|+++++. .|+ ...|..++.++..
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999864 56 5788999999999999999999999999975 464 6788899988854
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6.5e-12 Score=124.52 Aligned_cols=244 Identities=11% Similarity=0.017 Sum_probs=171.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM 390 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 390 (686)
.....+.+.|++++|...|+.+++.. |-+..+|..+..+|...|++++|...|++..+.... +...|..++.++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 45667889999999999999999874 347889999999999999999999999998876443 6678888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHH
Q 044251 391 QPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAF 470 (686)
Q Consensus 391 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (686)
++++|.+.++.+.... |+........ .... . ..+.......+..+...+.+.+|...|
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~----------~~~~------~----~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPA----------EEGA------G----GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhh----------hhhh------h----hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 9999999999887653 2211100000 0000 0 001111222333444556677777777
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 044251 471 ENMLREEI-KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ 549 (686)
Q Consensus 471 ~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (686)
.+...... ..+...+..+...+...|+++.|+..+++.+... +.+..+|..+...|...|++++|.+.|+++.+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 77765422 2345667777777788888888888888877665 4567777778888888888888888888877654 3
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 550 PTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 550 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
-+..+|..++.+|.+.|++++|++.|++.++
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3677777788888888888888888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.6e-12 Score=125.00 Aligned_cols=270 Identities=12% Similarity=0.022 Sum_probs=194.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 275 IMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKS 354 (686)
Q Consensus 275 ~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 354 (686)
.....+.+.|+ +++|+..|+++++..+. +..+|..+..++...|++++|...+.+..+... -+...|..+..+|...
T Consensus 24 ~~g~~~~~~g~-~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGD-LPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 34556778898 99999999999997643 688999999999999999999999999998743 4788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADA 434 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~ 434 (686)
|++++|.+.++...... |+...................... .+..+...+. ..++...
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~a~~~ 158 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKR-------------------ILGSLLSDSL-FLEVKEL 158 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------C-------------------TTHHHHHHHH-HHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchh-------------------hHHHHHHhhH-HHHHHHH
Confidence 99999999999988753 221111000000000000000000 0001111112 2567777
Q ss_pred HHHHHHcCCC-CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044251 435 FLRMKRVGIK-PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKV 513 (686)
Q Consensus 435 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 513 (686)
|.......+. .+...+..+...+...|++++|+..|++..... +-+..+|..+..++...|++++|.+.++++++..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 7777665432 356678888899999999999999999998752 3467888999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcCCccHH
Q 044251 514 EGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGL----------QPTLMTYNMLMNAYGRGGQTSKL 571 (686)
Q Consensus 514 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~p~~~~~~~li~~~~~~g~~~~A 571 (686)
+.+..++..+..+|.+.|++++|+..|++.++... ......|..+-.++...|+.+.+
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 56788899999999999999999999999876321 11223455555566656655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=6.9e-09 Score=101.51 Aligned_cols=216 Identities=10% Similarity=0.018 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHH
Q 044251 378 TFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAY 457 (686)
Q Consensus 378 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (686)
.|+.+..++.+.+..++|+.+++.+++.... +...|+....++...++..++|+..++...+..+. +..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 4444555555556666666666666554211 33444444444444443336677777777666554 677777788888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC-----
Q 044251 458 SVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQ----- 532 (686)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 532 (686)
.+.|++++|+..++++.+. -+-+...|..+...+...|+++.|+..++.+++.+ +.+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 8888888888888888875 23467788888888888888888888888888876 5567777777766666554
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 044251 533 -YLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVR 599 (686)
Q Consensus 533 -~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~ 599 (686)
+++|+..+.++++.. +.+...|+.+...+...| .+++.+.++...+....+ +...+..++..|..
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678888888888776 447888888877765544 577888888777543222 45566666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.1e-08 Score=101.67 Aligned_cols=276 Identities=9% Similarity=-0.049 Sum_probs=168.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 044251 311 ALMKSFCDEGLKNEALIIQMEMEKKGIPSN----AIVYNTLINAYCKSNQLEEAEGLFQEMKTKGL-KPT----SATFNI 381 (686)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ 381 (686)
.....+...|++++|.+++++..+.....+ ..+++.+..+|...|++++|+..|++..+... .++ ...+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344556677777777777777766532222 23566667777778888888888777654210 011 223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcC
Q 044251 382 LMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGG 461 (686)
Q Consensus 382 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (686)
+...+...|++..+...+....... ..............+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLI-----------------------------NEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------HhcccchhhHHHHHHHHHHHHHHHhc
Confidence 5566666777777766665543210 00000000001123444556667777
Q ss_pred CHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHHHcC
Q 044251 462 WHEKAYAAFENMLREE----IKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSE--KVEG----TRVTFNILLDGFAKQG 531 (686)
Q Consensus 462 ~~~~A~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g 531 (686)
+++.+...+....... .......+......+...++...+...+...... .... ....+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 7777777777665532 1222345555566667777777777776665543 1111 2334556666777888
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCH
Q 044251 532 QYLEARDVVSEFGKIGLQP---TLMTYNMLMNAYGRGGQTSKLPQLLKEMAT----LNIKPD-SVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~~~~~li~~~~~~g~~ 603 (686)
++++|...+++........ ....+..+..++...|++++|...++++.. .+..|+ ..++..+..+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 8888888888765443222 245566778888888999999888887763 244443 45677788888999999
Q ss_pred HHHHHHHHHHHH
Q 044251 604 KRAFFYHKQMVK 615 (686)
Q Consensus 604 ~~A~~~~~~m~~ 615 (686)
++|.+.++++++
T Consensus 308 ~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 308 SDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.3e-08 Score=99.53 Aligned_cols=198 Identities=10% Similarity=0.024 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
+|+.+...+.+.+.+++|+++++++.+.+ +-+..+|+....++...++++++|+..++++++.... +..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 44444444555555555555555554442 2233444444444444443355555555555544322 445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 044251 317 CDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQ----- 391 (686)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----- 391 (686)
.+.|++++|+..+..+.+.. +.+..+|..+...+.+.|++++|++.|+.+++.++. +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 55555555555555555542 224555555555555555555555555555554332 44445544444443332
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHc
Q 044251 392 -PEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRV 441 (686)
Q Consensus 392 -~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~ 441 (686)
+++|...+....+... .+...+..+...+... +. +++...+....+.
T Consensus 201 ~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~-~~~~~~~~~~~~l 248 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GL-SKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CG-GGCHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-Ch-HHHHHHHHHHHHh
Confidence 3445555555444321 1334444333333332 22 3344444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=2.9e-08 Score=96.76 Aligned_cols=220 Identities=14% Similarity=0.051 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc--------------cCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 181 GCCLYFYEWMRLQEPSLVSPRACSVLFPVLGR--------------ARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 181 ~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
.++..+|++++...|. ++..|..-+..+.+ .+..++|..+|++......+.+...|...+..+.
T Consensus 33 ~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4566788888887654 44666665554322 2335678889988776555567888899999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKS-FCDEGLKNEA 325 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A 325 (686)
+.|+++.|..+|+.+...........|...+..+.+.|+ .+.|.++|+++++.+.. +...|...+.. +...|+.+.|
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~-~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence 999999999999998876322234578888888888887 89999999999887543 34444444433 3446889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044251 326 LIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKG-LKPT--SATFNILMDAYSRRMQPEIVEKLLLEL 402 (686)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m 402 (686)
..+|+.+.+. .+.+...|..++..+.+.|+++.|..+|++..... ..|. ...|...+..-...|+.+.+.++++++
T Consensus 189 ~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 189 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887 45578889999999999999999999999987753 3332 457888888778889999999998887
Q ss_pred HHc
Q 044251 403 QDM 405 (686)
Q Consensus 403 ~~~ 405 (686)
.+.
T Consensus 268 ~~~ 270 (308)
T d2onda1 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.5e-07 Score=93.04 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=28.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044251 241 AISGLFWCGRYDDAWKAYEAMEANNVRPD------HVTCSIMITAMRKNGRSAKEAWEFFEKMNR 299 (686)
Q Consensus 241 li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 299 (686)
....+...|++++|++++++..+. .|+ ..++..+...+...|+ +++|+..|++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~ 79 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGE-LTRSLALMQQTEQ 79 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 344555666666666666665544 222 1233444444555555 5555555555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=2.1e-07 Score=90.45 Aligned_cols=188 Identities=11% Similarity=0.054 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044251 321 LKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLL 400 (686)
Q Consensus 321 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 400 (686)
..++|..+|+..++...+.+...|..++..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777777776545556667777777777777777777777777765433334466777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 044251 401 ELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKP 480 (686)
Q Consensus 401 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 480 (686)
.+.+.+... ...|...... -+...|+.+.|..+|+.+... .+.
T Consensus 159 ~al~~~~~~-~~~~~~~a~~-----------------------------------e~~~~~~~~~a~~i~e~~l~~-~p~ 201 (308)
T d2onda1 159 KAREDARTR-HHVYVTAALM-----------------------------------EYYCSKDKSVAFKIFELGLKK-YGD 201 (308)
T ss_dssp HHHTSTTCC-THHHHHHHHH-----------------------------------HHHTSCCHHHHHHHHHHHHHH-HTT
T ss_pred HHHHhCCCc-HHHHHHHHHH-----------------------------------HHHhccCHHHHHHHHHHHHHh-hhh
Confidence 766543221 1111111111 112234444444444444443 223
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044251 481 SIETYTALLDAFRRSGDTGMMMKIWKLMMSEK-VEG--TRVTFNILLDGFAKQGQYLEARDVVSEFGK 545 (686)
Q Consensus 481 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 545 (686)
+...+...++.+...|+.+.|..+|++.+... ..| ....|...+..-...|+.+.+..+++++.+
T Consensus 202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555544432 111 234555555555555666666666655543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=8.7e-09 Score=101.97 Aligned_cols=263 Identities=9% Similarity=-0.041 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044251 251 YDDAWKAYEAMEANNVRPDH-VTCSIMITAMR----------KNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDE 319 (686)
Q Consensus 251 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~----------~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 319 (686)
.++|+++++...+. .|+. ..|+..-..+. ..|. +++|+.+++.+++..+. +...+..+...+...
T Consensus 45 ~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~-~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAAL-VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (334)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHH-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHH-HHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHh
Confidence 35666666666554 3432 33433222221 2223 56777788877776433 566666666666665
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044251 320 G--LKNEALIIQMEMEKKGIPSNAIVYN-TLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVE 396 (686)
Q Consensus 320 g--~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (686)
+ ++++|...+..+.+... .+...+. .+...+...+.+++|+..++.+...... +...|+.+..++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHH
Confidence 5 47788888888877633 3555554 3445666678888888888887776554 6777888888888888777665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 397 KLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
..+....+. .|+...+ ...+...+.. +.+...+.......+ .+...+..++..+...|+.++|...+.+....
T Consensus 199 ~~~~~~~~~--~~~~~~~---~~~~~~l~~~-~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 199 PQGRLPENV--LLKELEL---VQNAFFTDPN-DQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SCCSSCHHH--HHHHHHH---HHHHHHHCSS-CSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhHHh--HHHHHHH---HHHHHHhcch-hHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444433221 1111111 1111111122 335566666555443 24555666777777777777777777776553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 477 EIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 477 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
. +.+..++..+..++...|++++|.+.++++++.. |.+...|+.|...+.
T Consensus 272 ~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 272 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp C-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 1 1233566666677777777777777777777664 334555555544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=4.1e-09 Score=104.42 Aligned_cols=109 Identities=8% Similarity=-0.121 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCCCChHHHH
Q 044251 355 NQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRM--QPEIVEKLLLELQDMGLEPNAKSYTCLI-SAYGRPRKMSDMA 431 (686)
Q Consensus 355 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~A 431 (686)
|++++|+.+++...+...+ +...|..+..++...+ +++++...+..+..... .+...+...+ ..+...+.. +.|
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~-~~A 163 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAP-AEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCH-HHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhcccc-HHH
Confidence 3455555555555554322 4444544444444433 24555555555544321 1222222222 222222222 445
Q ss_pred HHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHH
Q 044251 432 ADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAY 467 (686)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (686)
...++.+....+. +...|+.+..++.+.|++++|.
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHH
Confidence 5555444444332 4444444555555555444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1e-07 Score=90.01 Aligned_cols=197 Identities=12% Similarity=-0.078 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 272 TCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAY 351 (686)
Q Consensus 272 ~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 351 (686)
+|..+...+...|+ +++|++.|++.++..+. +..+|..+..++.+.|++++|...|+++.+... .+..++..+..+|
T Consensus 39 ~~~~~G~~y~~~g~-~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGL-RALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHH
Confidence 33344444555555 55555555555554322 455555555556666666666666666555432 2445555566666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH---
Q 044251 352 CKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMS--- 428 (686)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--- 428 (686)
...|++++|.+.|+...+.... +......+..++.+.+..+....+..........+ ..++ ++..+.......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHH
Confidence 6666666666666665554322 33333333333344444444444433333322111 1111 111111111110
Q ss_pred HHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 429 DMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLRE 476 (686)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 476 (686)
+.+...+....... .-...+|..+...|...|++++|+..|++.+..
T Consensus 192 ~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11111111100000 001234555667777777777777777777663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=2.7e-08 Score=94.14 Aligned_cols=217 Identities=12% Similarity=-0.022 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044251 180 LGCCLYFYEWMRLQEPSL--VSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKA 257 (686)
Q Consensus 180 ~~~Al~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 257 (686)
.+.|+..++.++...... ....++..++.+|.+.|++++|+..|++.....+ .++.+|+.+..+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhh
Confidence 345555666665543321 1235667778888888888888888888776433 6788888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044251 258 YEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGI 337 (686)
Q Consensus 258 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 337 (686)
|+++.+.. +-+..++..+..++...|+ +++|.+.|++.++.... +......+...+.+.+..+.+..+.........
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 88887753 3345677777788888887 88888888888876532 444444445555556655555555555554422
Q ss_pred CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044251 338 PSNAIVYNTLINAYCKSNQ----LEEAEGLFQEMKTKGLKP-TSATFNILMDAYSRRMQPEIVEKLLLELQDM 405 (686)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 405 (686)
. ...++ ++..+..... .+.+...+...... .| ...+|..+..++...|++++|.+.|+.....
T Consensus 171 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 171 E--QWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp C--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2 11222 2222221111 22222222211111 11 1235666788888888888888888888765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.2e-06 Score=76.28 Aligned_cols=132 Identities=10% Similarity=-0.026 Sum_probs=90.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccH
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSK 570 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 570 (686)
.+...|+++.|++.|..+. +++..+|..+..+|...|++++|++.|++.++.. +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 4556677777777766542 4556667777777777777777777777777665 3467777777777777777777
Q ss_pred HHHHHHHHHHCC------------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 571 LPQLLKEMATLN------------I--KPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEK 627 (686)
Q Consensus 571 A~~l~~~m~~~g------------~--~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 627 (686)
|+..|++..... + .++ ..++..+..++.+.|++++|.+.++++++....++......
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~ 160 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 777777766421 1 111 35667788889999999999999999887654444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.2e-06 Score=69.27 Aligned_cols=98 Identities=17% Similarity=0.052 Sum_probs=77.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 044251 523 LLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 523 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~ 602 (686)
-...+.+.|++++|+.+|+++++.. +-+...|..+..+|...|++++|+..+.++...+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4556778888888888888888776 4478888888888888888888888888888753 3367888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH
Q 044251 603 FKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 603 ~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
+++|+..+++.++.. |+...
T Consensus 87 ~~~A~~~~~~a~~~~--p~~~~ 106 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE--ANNPQ 106 (117)
T ss_dssp HHHHHHHHHHHHTTC--TTCHH
T ss_pred HHHHHHHHHHHHHhC--CCCHH
Confidence 888888888888643 55443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.8e-06 Score=74.02 Aligned_cols=123 Identities=10% Similarity=-0.070 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 044251 454 IHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQY 533 (686)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 533 (686)
...+...|++++|++.|.++ .+|+..+|..+..++...|+++.|+..|++.++.+ +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 45678889999999999764 45778888899999999999999999999999887 67788999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 534 LEARDVVSEFGKIGLQ--------------P-TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 534 ~~A~~~~~~~~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
++|...|++.+..... . ...++..+..++.+.|++++|.+.+..+...
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999997653211 1 1356677888999999999999999998864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2e-06 Score=69.53 Aligned_cols=103 Identities=13% Similarity=-0.004 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
.+..-...+...|++++|+..|..++...|.. +..|..++.++.+.|++++|+..++......+ .+...|..+..++
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHH
Confidence 34456788888999999999999999887654 47888888888899999999998888876443 6888888889999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044251 246 FWCGRYDDAWKAYEAMEANNVRPDHVTC 273 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 273 (686)
...|++++|+..|+...+. .|+...+
T Consensus 82 ~~~~~~~~A~~~~~~a~~~--~p~~~~~ 107 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKH--EANNPQL 107 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTT--CTTCHHH
T ss_pred HHccCHHHHHHHHHHHHHh--CCCCHHH
Confidence 9999999999999888876 4554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=0.00051 Score=63.93 Aligned_cols=49 Identities=12% Similarity=-0.079 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHCC
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQTSKLPQLLKEMATLN 582 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 582 (686)
.++++|...|++..+.| ++..+..|...|.+ ..+.++|.++|++..+.|
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 34555555555554443 33444444444443 224445555555554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.4e-06 Score=70.85 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD-SVTYSTMIYA 596 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~~~~~li~~ 596 (686)
..+++.+...+++++|.+.|++.+..+ +.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457778888899999999999999887 5588999999999987554 4569999999886543333 3477889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 597 FVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 597 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
|.+.|++++|+++|+++++. .|+..-...+...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQAKELERLI 115 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHHHHH
Confidence 99999999999999999984 47766555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.33 E-value=0.00053 Score=63.84 Aligned_cols=226 Identities=12% Similarity=-0.010 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044251 306 QEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCK----SNQLEEAEGLFQEMKTKGLKPTSATFNI 381 (686)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 381 (686)
+..+..|...+.+.+++++|.+.|++..+.| +...+..|...|.. ..++..|...++.....+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666777777777777776665 55556556666655 456777777777766654 3333344
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHH
Q 044251 382 LMDAYSR----RMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYG-RPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHA 456 (686)
Q Consensus 382 ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 456 (686)
+...+.. ..+.+.|...++...+.|........ ....... ........+...+...... .+...+..+...
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence 4444332 45667777777777665532111111 1111111 1122235566666665553 355666667766
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044251 457 YSV----GGWHEKAYAAFENMLREEIKPSIETYTALLDAFRR----SGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFA 528 (686)
Q Consensus 457 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 528 (686)
|.. ..+...+...++...+.| +......+...+.. ..+.+.|+..|.+..+.| +...+..|..+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 664 456677777777776653 55555556655654 568889999999988876 4556666777776
Q ss_pred H----cCCHHHHHHHHHHHHhCC
Q 044251 529 K----QGQYLEARDVVSEFGKIG 547 (686)
Q Consensus 529 ~----~g~~~~A~~~~~~~~~~~ 547 (686)
+ ..+.++|.+.|++..+.|
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHCc
Confidence 4 337888999999888777
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.2e-05 Score=68.99 Aligned_cols=88 Identities=7% Similarity=0.016 Sum_probs=44.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccH
Q 044251 491 AFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSK 570 (686)
Q Consensus 491 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 570 (686)
.|.+.|+++.|+..|+++++.. +.+...|..+..+|...|++++|...|+++++.. +-+..+|..++.+|...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555555444 3444455555555555555555555555554443 2244455555555555555555
Q ss_pred HHHHHHHHHH
Q 044251 571 LPQLLKEMAT 580 (686)
Q Consensus 571 A~~l~~~m~~ 580 (686)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=4.4e-06 Score=74.90 Aligned_cols=99 Identities=8% Similarity=-0.084 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 480 PSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLM 559 (686)
Q Consensus 480 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 559 (686)
|+...+......+.+.|+++.|+..|.++++.. +.+..+|+.+..+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677777788888889999999999999888876 6788888888888999999999999999888765 33678888899
Q ss_pred HHHHhcCCccHHHHHHHHHHH
Q 044251 560 NAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 560 ~~~~~~g~~~~A~~l~~~m~~ 580 (686)
.+|.+.|++++|+..|+++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.7e-05 Score=67.96 Aligned_cols=108 Identities=9% Similarity=-0.046 Sum_probs=91.1
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 530 (686)
......|.+.|++++|+..|++.++.. +-+...|..+..+|...|+++.|...|+++++.. +.+..+|..++.+|...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 344667889999999999999999863 4477889999999999999999999999999887 67888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMTYNMLMNA 561 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 561 (686)
|++++|...++++.... +-+...+..+..+
T Consensus 92 g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK-PHDKDAKMKYQEC 121 (159)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 99999999999998876 3356666555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=4e-05 Score=73.06 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=118.6
Q ss_pred hcCCCChHHHHHHHHHHHHHcCC----CC-ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHH
Q 044251 421 YGRPRKMSDMAADAFLRMKRVGI----KP-TSHSYTALIHAYSVGGWHEKAYAAFENMLREEI-----KPSIETYTALLD 490 (686)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~ll~ 490 (686)
|...+++ ++|...|.+..+... .+ -..+|..+..+|.+.|++++|+..+++...... .....++..+..
T Consensus 47 y~~~~~~-~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 4444444 556666665544310 11 135677778888888888888888887654211 111345556666
Q ss_pred HHHH-cCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 044251 491 AFRR-SGDTGMMMKIWKLMMSE----KVEG-TRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT------LMTYNML 558 (686)
Q Consensus 491 ~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l 558 (686)
.|.. .|+++.|+..+.+..+. +.++ ...++..+...|...|++++|..+|+++........ ...|..+
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 6644 58888888888887653 1111 234577788888899999999999988775432211 1234455
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 044251 559 MNAYGRGGQTSKLPQLLKEMATLNIK-PD---SVTYSTMIYAFVR--VRDFKRAFFYHKQMV 614 (686)
Q Consensus 559 i~~~~~~g~~~~A~~l~~~m~~~g~~-pd---~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 614 (686)
+..+...|+++.|.+.++++.+.... ++ ...+..++.++.. .+.+++|+..|+++.
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 66677888899999888888753211 11 2344556666544 245777877776553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=8.5e-06 Score=72.93 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=78.2
Q ss_pred CChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044251 445 PTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILL 524 (686)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 524 (686)
|+...+......|.+.|++++|+..|.+.+... +.+...|..+..+|.+.|+++.|+..++.+++.. +.+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 456666677788888888888888888887752 4466778888888888888888888888888765 55677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 044251 525 DGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+|...|++++|...|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=3.7e-05 Score=73.29 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=97.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 044251 347 LINAYCKSNQLEEAEGLFQEMKTK----GLKPT-SATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAY 421 (686)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 421 (686)
....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.++...+. +
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~---------------~ 107 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------F 107 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH---------------h
Confidence 355677777777777777776542 11111 236677777777778887777777665431 1
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHH-hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHc
Q 044251 422 GRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYS-VGGWHEKAYAAFENMLRE----EIKP-SIETYTALLDAFRRS 495 (686)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~ 495 (686)
...+.. ..+. .++..+...|. ..|++++|+..|++..+. +..+ ...++..+...+...
T Consensus 108 ~~~~~~-~~~~---------------~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~ 171 (290)
T d1qqea_ 108 THRGQF-RRGA---------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (290)
T ss_dssp HHTTCH-HHHH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhcccc-hhHH---------------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc
Confidence 111111 1111 12222333332 235555555555554321 1111 113345555566666
Q ss_pred CCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHh-
Q 044251 496 GDTGMMMKIWKLMMSEKVEGT------RVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-P---TLMTYNMLMNAYGR- 564 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p---~~~~~~~li~~~~~- 564 (686)
|++++|...++++........ ...+...+..+...|+++.|...++++.+.... + .......|+.++..
T Consensus 172 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~ 251 (290)
T d1qqea_ 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (290)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc
Confidence 666666666666554421111 112233333445566666666666665543211 1 12233445555443
Q ss_pred -cCCccHHHHHHHHHH
Q 044251 565 -GGQTSKLPQLLKEMA 579 (686)
Q Consensus 565 -~g~~~~A~~l~~~m~ 579 (686)
.+.+++|+..|+++.
T Consensus 252 d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 252 DSEQLSEHCKEFDNFM 267 (290)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHh
Confidence 234556666555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=3.5e-06 Score=67.42 Aligned_cols=94 Identities=13% Similarity=-0.048 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 044251 166 ECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGL 245 (686)
Q Consensus 166 ~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (686)
........+.+.|++++|+..|+.++...|. ++.+|..++.++.+.|++++|+..|++..+.. +.+..+|..+...|
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y 94 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 94 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHH
Confidence 3445677888899999999999999988775 45889999999999999999999999887744 36788999999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 044251 246 FWCGRYDDAWKAYEAME 262 (686)
Q Consensus 246 ~~~g~~~~A~~~~~~m~ 262 (686)
...|++++|++.|++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999888754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.08 E-value=1.7e-05 Score=63.29 Aligned_cols=87 Identities=10% Similarity=-0.002 Sum_probs=51.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 044251 524 LDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRD 602 (686)
Q Consensus 524 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~ 602 (686)
...+.+.|++++|...|++.+... +-+..+|..++.++.+.|++++|+..|+++.+. .| +..++..+..+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCC
Confidence 344555666666666666665554 225666666666666666666666666666653 33 35566666666666666
Q ss_pred HHHHHHHHHHH
Q 044251 603 FKRAFFYHKQM 613 (686)
Q Consensus 603 ~~~A~~~~~~m 613 (686)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0032 Score=59.96 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
.....++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. -+..+|..+...+
T Consensus 15 ~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 15 AHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp --------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 3445566777788888888888888766 777888888888888888877654 2556788888888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
..... ...+ .+.......+......++..|-..|.+++...+++..... -+.+...++.++..|++.+ .++.
T Consensus 80 ~~~~e-~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 80 VDGKE-FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHTTC-HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HhCcH-HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHH
Confidence 77665 4332 2333334456677778888888999999988888877644 3457778888888888754 3443
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSRRMQPEIVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKR 440 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~ 440 (686)
.+.++.. ... .....++..|.+.+-++++.-++..+.. .......++.-....-+ +....+-..+
T Consensus 152 ~e~l~~~---s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~-----~~~A~~~~i~~~~~~~~----~~~f~e~~~k 216 (336)
T d1b89a_ 152 REHLELF---WSR---VNIPKVLRAAEQAHLWAELVFLYDKYEE-----YDNAIITMMNHPTDAWK----EGQFKDIITK 216 (336)
T ss_dssp HHHHHHH---STT---SCHHHHHHHHHTTTCHHHHHHHHHHTTC-----HHHHHHHHHHSTTTTCC----HHHHHHHHHH
T ss_pred HHHHHhc---ccc---CCHHHHHHHHHHcCChHHHHHHHHhcCC-----HHHHHHHHHHcchhhhh----HHHHHHHHHc
Confidence 3333322 111 1233456677777777776666665521 11111222221111111 1111111222
Q ss_pred cCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 044251 441 VGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTF 520 (686)
Q Consensus 441 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 520 (686)
. .|...|-..+..|.... ++-...++..+... + | ...++..+.+.+++......++.....+ +..+.
T Consensus 217 ~---~N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~~-~--d---~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn 283 (336)
T d1b89a_ 217 V---ANVELYYRAIQFYLEFK-PLLLNDLLMVLSPR-L--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVN 283 (336)
T ss_dssp C---SSTHHHHHHHHHHHHHC-GGGHHHHHHHHGGG-C--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHH
T ss_pred c---CChHHHHHHHHHHHHcC-HHHHHHHHHHhccC-C--C---HHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHH
Confidence 1 13334444444444321 22222222222221 1 1 1334445556666666666666655444 34577
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 044251 521 NILLDGFAKQGQYLEARDVV 540 (686)
Q Consensus 521 ~~li~~~~~~g~~~~A~~~~ 540 (686)
+++.+.|...++++.-.+.+
T Consensus 284 ~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 284 ESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCcchhHHHHHHH
Confidence 77777777777765544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.3e-05 Score=63.27 Aligned_cols=108 Identities=10% Similarity=0.122 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCC-----HHHHHHH
Q 044251 520 FNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNI-KPD-----SVTYSTM 593 (686)
Q Consensus 520 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-----~~~~~~l 593 (686)
+-.+...|.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|++.++++++..- .+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456778888899999999999988876 44788899999999999999999999998875310 011 2467788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044251 594 IYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRS 630 (686)
Q Consensus 594 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 630 (686)
...+...+++++|++++++.+.. .++......+..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~ 120 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 88889999999999999988864 366666555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.6e-05 Score=64.40 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCCh---hHHHHHHHhcccCCCCCC-HHHHHHHHH
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMG---DDLMVLFKNLPQSKEFRD-AHVYNAAIS 243 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~-~~~~~~li~ 243 (686)
..+++.+...+++++|.+.|+.++...|. ++.++..++.++.+.++. ++|+.+|+++......++ ..+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~--~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 46788999999999999999999998875 458888899998876554 469999999877443232 347888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMI 277 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 277 (686)
+|.+.|++++|++.|+++.+. .|+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT--EPQNNQAKELE 112 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 999999999999999999886 57654433333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00016 Score=62.33 Aligned_cols=124 Identities=10% Similarity=-0.098 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 044251 168 VQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFW 247 (686)
Q Consensus 168 ~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (686)
......+.+.|++++|+..|+.++...+.... ..+.-......+ ...+|+.+..+|.+
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESS---------------FSNEEAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---------------CCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc---------------cchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence 34566788899999999999999876443221 000000011110 12356666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 248 CGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSF 316 (686)
Q Consensus 248 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 316 (686)
.|++++|+..++.....+ +.++.+|..+..++...|+ +++|+..|+++++.++. +..+...+....
T Consensus 75 ~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhh-HHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 777777777777766653 3356666667777777776 77777777777765432 444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00027 Score=60.88 Aligned_cols=130 Identities=9% Similarity=-0.049 Sum_probs=82.1
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK 529 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 529 (686)
+......+.+.|++++|+..|.+.+..-..... ...........+ ...+|+.+..+|.+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence 444566788888888888888887763110000 000000000000 12356667777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDF 603 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~ 603 (686)
.|++++|+..+++.+... +.++.+|..++.+|...|++++|+..|+++.+. .| |..+...+..+..+.+..
T Consensus 75 ~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888775 447888888888888888888888888888764 45 455555555554444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.78 E-value=0.00036 Score=58.79 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 553 MTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 553 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
.+|..+..+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|+..|+++++.. |+...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~ 136 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH
Confidence 467788999999999999999999998753 3368899999999999999999999999999854 65443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00039 Score=59.68 Aligned_cols=129 Identities=7% Similarity=-0.159 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+......+.+.|++.+|+..|..++..-+.... ... ......+. ....+|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------------~~~-~~~~~~~~-------~~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------------LSE-KESKASES-------FLLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------------CCH-HHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------------cch-hhhhhcch-------hHHHHHHhHHHH
Confidence 34556678889999999999999988764222110 000 00000010 112345556666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCD 318 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 318 (686)
|.+.|++++|+..++...... +.+..+|..+..++...|+ +++|+..|.++++..+ .+..+...+-....+
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNP-QNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 667777777777776666543 4455666666666666666 6777777777666542 244444444443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00033 Score=60.70 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 044251 165 RECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISG 244 (686)
Q Consensus 165 ~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 244 (686)
+.+......+...|++++|.+.|..++...+...-. .....+-+...-..+.. .....+..++..
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~ 76 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALVE----DKVLAHTAKAEA 76 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 455566788999999999999999999874433210 11111111111111111 234567788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 044251 245 LFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNR-----KGVKLSQEV 308 (686)
Q Consensus 245 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~~~~~~~~~ 308 (686)
+.+.|++++|+..++.+.... +-+...|..++.++...|+ ..+|++.|+++.+ .|+.|...+
T Consensus 77 ~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 77 EIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888889999888888887763 4567888888888888888 8888888888743 477776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.0003 Score=57.20 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHHHHH
Q 044251 488 LLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQ-PT-----LMTYNMLMNA 561 (686)
Q Consensus 488 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~li~~ 561 (686)
+...+...|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|...++++++.... +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544 344555555555555555555555555554432210 00 1344455555
Q ss_pred HHhcCCccHHHHHHHHHHH
Q 044251 562 YGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 562 ~~~~g~~~~A~~l~~~m~~ 580 (686)
+...+++++|++.|++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 5556666666666665554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.00048 Score=59.58 Aligned_cols=131 Identities=11% Similarity=0.026 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 486 TALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 486 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
..........|+++.|...|...+...-. +.. ......+.+...-..+. ......+..++.++.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG-~~l---------~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRG-PVL---------DDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STT---------GGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc-ccc---------ccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 33445667788888888888888875211 000 00000001111111111 11345678889999999
Q ss_pred CCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHH
Q 044251 566 GQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVK-----SGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 566 g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~~~l 632 (686)
|++++|+..++++... .| +...|..++.+|.+.|++++|++.|+++.+ .|+.|...+-...-.++
T Consensus 81 g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 81 GRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 9999999999999974 45 788999999999999999999999998743 49999988766555555
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.68 E-value=0.00097 Score=56.01 Aligned_cols=121 Identities=15% Similarity=-0.011 Sum_probs=78.3
Q ss_pred HhhhHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 450 YTALIHAYSVGGWHEKAYAAFENMLREEI----KPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+......+.+.|++.+|+..|.+.+..-. .++...... .. .....+|+.+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~--------------------~~----~~~~~~~~Nla~ 75 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK--------------------KK----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH--------------------HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh--------------------hh----hHHHHHHhhHHH
Confidence 44455677888999999999988876311 111111000 00 011245667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAF 597 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~ 597 (686)
+|.+.|++++|+..+++++... +.+..+|..++.+|...|++++|+..|++..+. .| |..+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 7888888888888888877765 447788888888888888888888888888764 45 354544444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.016 Score=54.87 Aligned_cols=280 Identities=9% Similarity=0.008 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 164 KRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 164 ~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
.-....++..+.+.|.++.|..+|..+. .|..++..+.+.++++.|..++.+. .+..+|-.+..
T Consensus 14 ~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 14 NAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ---------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 3344456777779999999999998663 4778888889999999998888764 46778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 244 GLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKN 323 (686)
Q Consensus 244 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (686)
.+.+......| .+...+...+......++..|-..|. +++...+++..... -..+...++.++..|++.+. +
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~-~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGY-FEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H
Confidence 99988877554 22233334566666788899988887 99999999987654 24577888999999988753 3
Q ss_pred HHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044251 324 EALIIQMEMEKKGIPSNAI----------VYNTLINAYCKSNQLEEAEGLFQEMKTKGLKPTSATFNILMDAYSRRMQPE 393 (686)
Q Consensus 324 ~A~~~~~~~~~~g~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 393 (686)
++.+.+......-+.. .|..++..|.+.|+++.|..++ .+. .++..-....+..+.+..+++
T Consensus 150 ---kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 150 ---KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp ---HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred ---HHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChH
Confidence 3333333321111211 1233344444444444443332 111 112212233344455555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHH
Q 044251 394 IVEKLLLELQDMGLEPNAKSYTCLISAYGRPRKMSDMAADAFLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENM 473 (686)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 473 (686)
...+++....+. .|+ ..+.++......-+ ...++..+-+.+++.-....++..
T Consensus 222 ~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d-----------------------~~r~V~~~~k~~~l~li~p~Le~v 274 (336)
T d1b89a_ 222 LYYRAIQFYLEF--KPL--LLNDLLMVLSPRLD-----------------------HTRAVNYFSKVKQLPLVKPYLRSV 274 (336)
T ss_dssp HHHHHHHHHHHH--CGG--GHHHHHHHHGGGCC-----------------------HHHHHHHHHHTTCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHc--CHH--HHHHHHHHhccCCC-----------------------HHHHHHHHHhcCCcHHHHHHHHHH
Confidence 544444444332 121 12222222222111 122344444555555555666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 474 LREEIKPSIETYTALLDAFRRSGDTGMMMKIW 505 (686)
Q Consensus 474 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 505 (686)
...+ +....+++...|...++++......
T Consensus 275 ~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 275 QNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 5443 3467888888888888876544433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.6e-05 Score=82.24 Aligned_cols=116 Identities=10% Similarity=-0.073 Sum_probs=67.2
Q ss_pred ChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044251 446 TSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLD 525 (686)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 525 (686)
+...+..+...+.+.|+.++|...+...... . ...++..+...+...|++++|...|.+.++.. |.+...|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 3445666666777777777777766665442 1 12456667777888888888888888888776 566778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044251 526 GFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566 (686)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 566 (686)
.|...|+..+|...|.+.+... +|...++..|...+.+..
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 8888888888888888877665 567777888877776544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=0.00011 Score=61.49 Aligned_cols=112 Identities=13% Similarity=-0.028 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----------QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRG 565 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 565 (686)
+.+++|...++..++.. |.+..++..+..+|.. .+.+++|+..|+++++.. +.+..+|..++.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 33444444444444443 3344444444444332 233466777777766665 33666777777766654
Q ss_pred CC-----------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 566 GQ-----------TSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 566 g~-----------~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
|+ +++|.+.|+++.+ +.|+...|...+..+ ..|.+++.+..+.|
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 43 3455555555554 345443333322222 34445555555444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.65 E-value=0.00054 Score=58.70 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 519 TFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 519 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
+|+.+..+|.+.|++++|+..+++.++.. +.+..+|..++.+|...|++++|...|+++..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666666666666554 33566666666666666666666666666665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00032 Score=60.33 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=87.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044251 451 TALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQ 530 (686)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 530 (686)
......+.+.|++++|+..|.+++.. .............. ... +.....|..+..+|.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHhh
Confidence 34456677889999999988877642 00011111111110 001 22455677778888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 044251 531 GQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKR 605 (686)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~ 605 (686)
|++++|+..++++++.. +.+..+|..++.+|.+.|++++|+..|+++.+. .| |..+...+..+..+.....+
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888776 447888888888888889999999988888874 44 56666666665555444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.00044 Score=59.38 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044251 487 ALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGG 566 (686)
Q Consensus 487 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 566 (686)
.....+...|+++.|+..|.++++.. ............. ... +.+...|..+..+|.+.|
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHhhc
Confidence 34556678889999988888776421 0111111111111 111 225667888999999999
Q ss_pred CccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 044251 567 QTSKLPQLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVP-DVKSYEKLRSIL 632 (686)
Q Consensus 567 ~~~~A~~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~l 632 (686)
++++|+..+.++++. .| +..+|..++.++...|++++|+..|+++++.. | +...+..+..+.
T Consensus 92 ~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 92 DWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVK 155 (169)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 999999999999975 45 68899999999999999999999999999864 4 445555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=2.9e-05 Score=80.33 Aligned_cols=134 Identities=12% Similarity=-0.003 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044251 461 GWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVV 540 (686)
Q Consensus 461 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 540 (686)
+.++.|+..+...... .+++...+..+...+.+.|+.+.|...+....... ...++..+.+.+...|++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3344555444443332 12345667777778888899999888877766433 2356778899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 044251 541 SEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRV 600 (686)
Q Consensus 541 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 600 (686)
++..+.. +-+...|+.|+..|...|+..+|+..|.+..... .|-..++..|...+.+.
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 9999876 4478899999999999999999999999998753 45677888887777544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.26 E-value=0.00017 Score=66.92 Aligned_cols=122 Identities=8% Similarity=0.008 Sum_probs=75.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHH
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 572 (686)
.+.|++++|+..+++.++.. |.+...+..++..|+..|++++|...++...+.. +-+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 34677888888888887776 6677788888888888888888888888877664 224555555555544333322222
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044251 573 QLLKEMATLNIKP-DSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSG 617 (686)
Q Consensus 573 ~l~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 617 (686)
.-.......+ .| +...+......+...|+.++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 1111111111 22 23344445566778899999999998887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.24 E-value=0.00037 Score=58.04 Aligned_cols=73 Identities=10% Similarity=-0.138 Sum_probs=50.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHccC----------ChhHHHHHHHhcccCCCCCCHHHHHHHHH
Q 044251 174 MANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRAR----------MGDDLMVLFKNLPQSKEFRDAHVYNAAIS 243 (686)
Q Consensus 174 l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 243 (686)
+-+.+.+++|+..|+.+....|.. +.++..++.+|...+ .+++|+..|++..+..+ .+..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~--~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHH
Confidence 345566899999999999998755 478888888776543 34567777776665332 56667777777
Q ss_pred HHHHcC
Q 044251 244 GLFWCG 249 (686)
Q Consensus 244 ~~~~~g 249 (686)
+|...|
T Consensus 84 ~y~~~g 89 (145)
T d1zu2a1 84 AYTSFA 89 (145)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.22 E-value=0.0023 Score=53.83 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=67.2
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHC----
Q 044251 519 TFNIL--LDGFAKQGQYLEARDVVSEFGKIGLQ-P----------TLMTYNMLMNAYGRGGQTSKLPQLLKEMATL---- 581 (686)
Q Consensus 519 ~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 581 (686)
+|..+ ...+...|++++|+..|++.++.... | ...+|+.+..+|...|++++|+..+++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 34455667777777777776643211 1 1356788888888888888888888887642
Q ss_pred -CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044251 582 -NIKPD-----SVTYSTMIYAFVRVRDFKRAFFYHKQMVK 615 (686)
Q Consensus 582 -g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 615 (686)
...++ ..++..+..+|...|++++|+..|+++++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 23567788999999999999999999875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.11 E-value=0.00054 Score=63.39 Aligned_cols=123 Identities=8% Similarity=-0.031 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 536 (686)
..+.|++++|+..+++.++. -+-+...+..+...++..|++++|...++...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 34668888888888888775 34466778888888888888888888888887765 44455555555444433333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHC
Q 044251 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATL 581 (686)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 581 (686)
..-.......+.+++...+......+...|+.++|.++++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111121222334444556677888888888888887764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.0015 Score=49.59 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 044251 162 VSKRECVQLLELMANDGLLGCCLYFYEWMRLQ 193 (686)
Q Consensus 162 ~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~ 193 (686)
+|.++|..+...+.+.|++++|+..|+.+++.
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~ 34 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQ 34 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57888999999999999999999999888765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.81 E-value=0.0097 Score=49.69 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCC----
Q 044251 492 FRRSGDTGMMMKIWKLMMSEKVE-G----------TRVTFNILLDGFAKQGQYLEARDVVSEFGKI-----GLQPT---- 551 (686)
Q Consensus 492 ~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~---- 551 (686)
+...|++++|+..|++.++.... | ....|+.+..+|.+.|++++|...+++.+.. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445566666555555543110 0 1356777777788888888888777776532 11121
Q ss_pred -HHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 044251 552 -LMTYNMLMNAYGRGGQTSKLPQLLKEMAT 580 (686)
Q Consensus 552 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 580 (686)
..+|+.+..+|...|++++|+..|+++.+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788889999999999999888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.03 Score=41.91 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 044251 518 VTFNILLDGFAKQGQYLEARDVVSEFGKI 546 (686)
Q Consensus 518 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 546 (686)
.+++.+..+|.+.|++++|+..++++++.
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444444444555555555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.88 E-value=0.097 Score=41.81 Aligned_cols=82 Identities=17% Similarity=0.102 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 044251 530 QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVR----VR 601 (686)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g 601 (686)
..+.++|+..+++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 346677777777776655 45555556665553 345677888888877755 44555566665554 35
Q ss_pred CHHHHHHHHHHHHHCC
Q 044251 602 DFKRAFFYHKQMVKSG 617 (686)
Q Consensus 602 ~~~~A~~~~~~m~~~g 617 (686)
+.++|.++++++.+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 7788888888887776
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.28 E-value=0.21 Score=39.74 Aligned_cols=81 Identities=7% Similarity=-0.045 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 044251 496 GDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAK----QGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGR----GGQ 567 (686)
Q Consensus 496 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 567 (686)
.+.++|...+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555666665555544 33334444444443 345677777777776655 44555556555554 345
Q ss_pred ccHHHHHHHHHHHCC
Q 044251 568 TSKLPQLLKEMATLN 582 (686)
Q Consensus 568 ~~~A~~l~~~m~~~g 582 (686)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 667777777776655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.77 E-value=0.61 Score=35.66 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=81.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 457 YSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEA 536 (686)
Q Consensus 457 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 536 (686)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-.. .| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34456777777777776653 24455555555555555555555555554322 11 1233444443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044251 537 RDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKS 616 (686)
Q Consensus 537 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 616 (686)
...+-.+ ..+....+..+..+...|+-+.-.++++.+.+. -+|++.....+..+|.+.|...++-+++.++-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3333322 123445566666777777777777777775553 3667777777777777777777777777777777
Q ss_pred CC
Q 044251 617 GQ 618 (686)
Q Consensus 617 g~ 618 (686)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 65
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=2.5 Score=41.25 Aligned_cols=120 Identities=8% Similarity=0.024 Sum_probs=65.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--ccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 044251 169 QLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLG--RARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLF 246 (686)
Q Consensus 169 ~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (686)
..+....+.|++.++.++...+. ..| . ..|...-..-. .....+++..+++.-+.. +.........+..+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~-dyp--L--~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLK-DYP--L--YPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGT-TST--T--HHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhc-CCC--C--HHHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHH
Confidence 44666777888887777766663 233 2 23333322222 234555666666654431 112233444566677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 044251 247 WCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAMRKNGRSAKEAWEFFEKMNRKG 301 (686)
Q Consensus 247 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~~ 301 (686)
+.+++...+..+. ..+.+...-.....+....|+ ...|...+..+-..|
T Consensus 84 ~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~-~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 84 RREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQ-SEEAWQGAKELWLTG 132 (450)
T ss_dssp HTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHSCS
T ss_pred hccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcC
Confidence 7777766444331 113345444556666777776 677777776666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.68 E-value=0.33 Score=37.52 Aligned_cols=82 Identities=9% Similarity=0.083 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044251 549 QPTLMTYNMLMNAYGRGGQ---TSKLPQLLKEMATLNIKPD-SVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKS 624 (686)
Q Consensus 549 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 624 (686)
.+...+--.+.+++.+..+ .++++.+|++....+ +.+ ...+..|.-+|.+.|++++|+++++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 4667777778888887654 568999999988642 224 35667788899999999999999999998 4588776
Q ss_pred HHHHHHHHH
Q 044251 625 YEKLRSILD 633 (686)
Q Consensus 625 ~~~l~~~l~ 633 (686)
...+.+..+
T Consensus 109 A~~L~~~Ie 117 (124)
T d2pqrb1 109 VGALKSMVE 117 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.01 E-value=1.9 Score=32.85 Aligned_cols=120 Identities=9% Similarity=-0.003 Sum_probs=72.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCccHHH
Q 044251 493 RRSGDTGMMMKIWKLMMSEKVEGTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPTLMTYNMLMNAYGRGGQTSKLP 572 (686)
Q Consensus 493 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 572 (686)
.-.|..++..++..+..... +..-||.++--....-+-+...++++.+-+. -|. ...+++....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 44677788888877776542 4455666554444445555555555544321 111 1333444333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044251 573 QLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDV 634 (686)
Q Consensus 573 ~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~a 634 (686)
..+-.+ .-+..-....++.+.+.|+-+.--++++.+.+. -+|+++..-++..+|..
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kk 132 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRR 132 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHH
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Confidence 333222 224455667778889999999999999998875 46889888888888844
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.26 Score=38.17 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcc---CChhHHHHHHHhcccCCCCCCHH
Q 044251 160 GRVSKRECVQLLELMANDGLLGCCLYFYEWMRLQEPSLVSPRACSVLFPVLGRA---RMGDDLMVLFKNLPQSKEFRDAH 236 (686)
Q Consensus 160 ~~~~~~~~~~l~~~l~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~ 236 (686)
.+++.+.+..+-..+...+. ..++..+--..+-++.+. .+.++++.+|+.+..........
T Consensus 11 ~pl~~~el~~~~~q~~~e~~----------------~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd 74 (124)
T d2pqrb1 11 EPLYPQQLEILRQQVVSEGG----------------PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRE 74 (124)
T ss_dssp SCCCHHHHHHHHHHHHHTTG----------------GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC----------------CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHH
Confidence 45566666666555554421 112333333334444443 33456777887776533212235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 044251 237 VYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHV 271 (686)
Q Consensus 237 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 271 (686)
.+-.|..+|.+.|++++|++.++.+.+. .|+..
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 6667788888888999988888888876 56543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=7.5 Score=37.50 Aligned_cols=357 Identities=10% Similarity=0.026 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044251 201 RACSVLFPVLGRARMGDDLMVLFKNLPQSKEFRDAHVYNAAISGLFWCGRYDDAWKAYEAMEANNVRPDHVTCSIMITAM 280 (686)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 280 (686)
.....-+..+++.++++..+..+.. .+.+...-...+.+..+.|+.++|.+.+..+-..| .-....+..++..+
T Consensus 73 ~lr~~~l~~L~~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (450)
T d1qsaa1 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3344456678888988776655432 33577777788899999999999999888886654 22223444455444
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044251 281 RKNGRSAKEAWEFFEKMNRKGVKLSQEVVGALMKSFCDEGLKNEALIIQMEMEKKGIPSNAIVYNTLINAYCKSNQLEEA 360 (686)
Q Consensus 281 ~~~g~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 360 (686)
...|. ++...+-.-+......|+...|..+...+... .......++........+..
T Consensus 147 ~~~~~------------------lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~- 203 (450)
T d1qsaa1 147 RASGK------------------QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT- 203 (450)
T ss_dssp HHTTC------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH-
T ss_pred HhcCC------------------CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH-
Confidence 44332 34444445555666677888777776543222 33344444444332222221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHH---HH-HHhcCCCChHHHHHHH
Q 044251 361 EGLFQEMKTKGLKPTSATFNILMDAYSR--RMQPEIVEKLLLELQDMGLEPNAKSYTC---LI-SAYGRPRKMSDMAADA 434 (686)
Q Consensus 361 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll-~~~~~~~~~~~~A~~~ 434 (686)
.. ... ..+......+..++.+ ..+.+.+..++......... +...... .+ ..+...+.. +.+..+
T Consensus 204 --~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~-~~a~~~ 274 (450)
T d1qsaa1 204 --FA---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVT-DEQAKW 274 (450)
T ss_dssp --HH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCC-HHHHHH
T ss_pred --HH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCch-HHHHHH
Confidence 11 111 1233333333333322 35778888888877654322 2222211 22 222333333 567777
Q ss_pred HHHHHHcCCCCChhhHhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044251 435 FLRMKRVGIKPTSHSYTALIHAYSVGGWHEKAYAAFENMLREEIKPSIETYTALLDAFRRSGDTGMMMKIWKLMMSEKVE 514 (686)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 514 (686)
+......+. +.......+......+++..+...+..|... ..-...-..-+..++...|+.+.|...|..+...
T Consensus 275 ~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~--- 348 (450)
T d1qsaa1 275 RDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--- 348 (450)
T ss_dssp HHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---
T ss_pred HHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---
Confidence 766655432 3333344555566778999999888877543 2233455566778899999999999999988642
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHH---HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHHHH
Q 044251 515 GTRVTFNILLDGFAKQGQYLEARDVVSEFGKIGLQPT-LMT---YNMLMNAYGRGGQTSKLPQLLKEMATLNIKPDSVTY 590 (686)
Q Consensus 515 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 590 (686)
++ .|..|.. .+.|..- .+-.. .....+. ... -..-+..+...|+..+|...|..+... .+....
T Consensus 349 ~~--fYG~LAa--~~Lg~~~---~~~~~--~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~ 416 (450)
T d1qsaa1 349 RG--FYPMVAA--QRIGEEY---ELKID--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQ 416 (450)
T ss_dssp CS--HHHHHHH--HHTTCCC---CCCCC--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHH
T ss_pred CC--hHHHHHH--HHcCCCC---CCCcC--CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHH
Confidence 33 2333221 2222210 00000 0000001 111 112356677889999999999988753 356667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 044251 591 STMIYAFVRVRDFKRAFFYHKQM 613 (686)
Q Consensus 591 ~~li~~~~~~g~~~~A~~~~~~m 613 (686)
..+.....+.|.++.|+....++
T Consensus 417 ~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 417 AQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhHHHHHHHHH
Confidence 77788888999999999887665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.02 E-value=2.1 Score=30.87 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044251 570 KLPQLLKEMATLNIKPDSVTYSTMIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSIL 632 (686)
Q Consensus 570 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 632 (686)
++.+-+..+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..++..+|.-+++-+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 45566666777788899999999999999999999999999877654 224566777666655
|