Citrus Sinensis ID: 044264
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.922 | 0.284 | 0.321 | 1e-42 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.915 | 0.381 | 0.287 | 6e-31 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.847 | 0.383 | 0.290 | 2e-29 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.847 | 0.376 | 0.281 | 2e-28 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.851 | 0.377 | 0.303 | 8e-28 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.738 | 0.330 | 0.294 | 6e-27 | |
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.792 | 0.408 | 0.244 | 6e-14 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.849 | 0.409 | 0.253 | 1e-10 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.824 | 0.398 | 0.267 | 2e-09 | |
| Q9XIF0 | 906 | Putative disease resistan | no | no | 0.640 | 0.310 | 0.256 | 4e-09 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 230/473 (48%), Gaps = 68/473 (14%)
Query: 2 RPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEI 61
R ++ ++ IG + + +SFFQ D + S MHD+++D A+ +S + CF +E
Sbjct: 453 RSSRRLEDIGNDYLGDLVAQSFFQRL----DITMTSFVMHDLMNDLAKAVSGDFCFRLED 508
Query: 62 DGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGD--DEFWLTE-VL 118
D P I S ++ S + F S C + LR++L ++ + LTE VL
Sbjct: 509 DNI--PEIPSTTRHFSFSRSQCDASVAFR-SICGAEFLRTILPFNSPTSLESLQLTEKVL 565
Query: 119 PQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCEL 178
L + L+ LR L + +Q I +PK+++ L LRYL+LS KI++LPE +C L
Sbjct: 566 NPLLNALSGLRILSLSHYQ-------ITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTL 618
Query: 179 YNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG 238
NLQ L + +C+DL LP+ +LINL L GT L +P GI++L SL+++ FV+G
Sbjct: 619 CNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVEMPPGIKKLRSLQKLSNFVIG 677
Query: 239 ----------------RGVARSSELEN-------------KKNLIDLLLY--------FG 261
RG R SEL+N +K +D L+ F
Sbjct: 678 RLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFV 737
Query: 262 HGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWM--MSLTDLRILTLSHCIN 319
G+ +EVL L+P P+LK I Y+G P W+ S + +TLS C
Sbjct: 738 PGSFNALACDQKEVLRMLEPHPHLKTFCIESYQG-GAFPKWLGDSSFFGITSVTLSSCNL 796
Query: 320 CEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379
C LPP+G+LPSL+ L +++VG +F G +S V F L+ ++F+ M
Sbjct: 797 CISLPPVGQLPSLKYLSIEKFNILQKVGLDFF-----FGENNSRGVPFQSLQILKFYGMP 851
Query: 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLR-ALPDHLLQTTTLQKLEIWGCP 431
EW + G I P L L I RCP+LR P+ L +T ++ I CP
Sbjct: 852 RWDEWICPELEDG-IFPCLQKLIIQRCPSLRKKFPEGLPSST---EVTISDCP 900
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 215/476 (45%), Gaps = 74/476 (15%)
Query: 2 RPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEI 61
R +K ++ +G E F + RS Q K I MHD +++ AQF S E
Sbjct: 461 RSSKNLEELGNEYFSELESRSLLQ---KTKTRYI----MHDFINELAQFASGEFSSKFE- 512
Query: 62 DGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSL-----LIDDNGDDEFWLTE 116
DG + + + R+ + L P+ F +++ ++ L L N L +
Sbjct: 513 DGCKL----QVSERTRY-LSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQ 567
Query: 117 VLPQ-LFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK-LVHLRYLNLSRLKIEKLPET 174
++ + L LT LR L + ++ I +P + K + H R+L+LSR ++EKLP++
Sbjct: 568 MVSEKLLPTLTRLRVLSLSHYK-------IARLPPDFFKNISHARFLDLSRTELEKLPKS 620
Query: 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234
LC +YNLQ L + C LKELP LINL YL GT+ LR +P RL SL+ +
Sbjct: 621 LCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTT 679
Query: 235 F------------------------------VVGRGVARSSELENKKNL--IDLLLYFGH 262
F VV A + L +KK+L ID + G
Sbjct: 680 FFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGS 739
Query: 263 GNEE-----RKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLS 315
+ E + + + EV E L+P +++ L I +Y+G P W+ S + + + L
Sbjct: 740 SSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRF-PDWLSDPSFSRIVCIRLR 798
Query: 316 HCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQF 375
C C LP LG+LP L++L+ M ++ +G +F SD F L+T++F
Sbjct: 799 ECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYF--SDQQLRDQDQQPFRSLETLRF 856
Query: 376 WDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRA-LPDHLLQTTTLQKLEIWGC 430
++ +EW +G++ P L L I RCP L LP L +L L I+ C
Sbjct: 857 DNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTLPTFL---PSLISLHIYKC 909
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/454 (29%), Positives = 198/454 (43%), Gaps = 82/454 (18%)
Query: 2 RPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEI 61
+ N E++ +G+E + + RSFFQE D KMHD++HD A L F+
Sbjct: 437 KGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF--KMHDLIHDLATSL-----FSANT 489
Query: 62 DGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL 121
I+ +HS + I F V F+ T LP L
Sbjct: 490 SSSNIREIN------KHSYTHM-----MSIGFAEVV--------------FFYT--LPPL 522
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNL 181
++ LR L+ + ++P +I LVHLRYLNL + LP+ LC+L NL
Sbjct: 523 -EKFISLRVLNLG-------DSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNL 574
Query: 182 QLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV 241
Q L+++ C L LP+ KL +L LL G++SL +P I LT L+ + +FVVGR
Sbjct: 575 QTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKK 634
Query: 242 -----------------------------ARSSELENKKNLIDLLLYFGHGNEERKRKKD 272
A+ + L K NL L + + + ++
Sbjct: 635 GYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEE 694
Query: 273 EEVLEALQPPPNLKHLGIHQYRGNNVHPHWM--MSLTDLRILTLSHCINCEHLPPLGKLP 330
+VLEAL+P NL L I+ +RG ++ P WM L ++ + +S+ NC LPP G LP
Sbjct: 695 VKVLEALKPHSNLTSLKIYGFRGIHL-PEWMNHSVLKNIVSILISNFRNCSCLPPFGDLP 753
Query: 331 SLEQLYF-YSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389
LE L + V+ V + V+ D + + FP L+ + WD LK +
Sbjct: 754 CLESLELHWGSADVEYVEE----VDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEG 809
Query: 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQ 423
E P L + I CP L L +L T+L+
Sbjct: 810 --EEQFPVLEEMIIHECPFL-TLSSNLRALTSLR 840
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 201/466 (43%), Gaps = 94/466 (20%)
Query: 1 QRPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQ--FLSKNECFT 58
+ N E++ +G E ++ + RSFFQE + K+HD++HD A F + C
Sbjct: 437 SKGNLELEDVGNEVWNELYLRSFFQEIEAKSGNTYF--KIHDLIHDLATSLFSASASC-- 492
Query: 59 VEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVL 118
N+R VK K I F +V ++
Sbjct: 493 ---------------GNIREINVKDYKHT-VSIGFAAV-----------------VSSYS 519
Query: 119 PQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCEL 178
P L + LR L+ + ++ +++P +I L+HLRYL+LS LPE LC+L
Sbjct: 520 PSLLKKFVSLRVLNLSYSKL-------EQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKL 572
Query: 179 YNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG 238
NLQ L+V +C L LP+ KL +L +L+ G L P I LT L+ + F+VG
Sbjct: 573 QNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVG 631
Query: 239 ----------------------------RGVARSSELENKKNLIDLLLYFGHGNEERKRK 270
+ L K NL L + + + R
Sbjct: 632 SKKGYQLGELKNLNLCGSISITHLERVKNDTDAEANLSAKANLQSLSMSWDNDGPNRYES 691
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILT--LSHCINCEHLPPLGK 328
K+ +VLEAL+P PNLK+L I + G P W+ ++++ + C NC LPP G+
Sbjct: 692 KEVKVLEALKPHPNLKYLEIIAFGGFRF-PSWINHSVLEKVISVRIKSCKNCLCLPPFGE 750
Query: 329 LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEW--DY 386
LP LE L + GS + E++ + H R S+ +FP LK ++ W LK +
Sbjct: 751 LPCLENLELQN-GSAEV---EYVEEDDVHSRFSTR-RSFPSLKKLRIWFFRSLKGLMKEE 805
Query: 387 GDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPN 432
G+ E P L + I CP L P ++++KLE+ G N
Sbjct: 806 GE----EKFPMLEEMAILYCP-LFVFP----TLSSVKKLEVHGNTN 842
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 206/461 (44%), Gaps = 87/461 (18%)
Query: 2 RPNKEIDVIGEECFDIIARRSFFQEF-VKNDDDEILSCKMHDIVHDFAQFLSKNECFTVE 60
+ N E++ +G E ++ + RSFFQE VK+ KMHD++HD A + +
Sbjct: 436 KGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF---KMHDLIHDLATSMFSASASSRS 492
Query: 61 IDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQ 120
I R VK + F ++ + K + S+ G E ++ P
Sbjct: 493 I---------------RQINVKDDEDMMFIVT--NYKDMMSI-----GFSEV-VSSYSPS 529
Query: 121 LFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYN 180
LF LR L+ + N +++P ++ LVHLRYL+LS KI LP+ LC+L N
Sbjct: 530 LFKRFVSLRVLNLS-------NSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQN 582
Query: 181 LQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG-- 238
LQ L++ +CQ L LP+ KL +L L+ L +P I LT L+ + FVVG
Sbjct: 583 LQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVVGER 641
Query: 239 -------------RGV--------------ARSSELENKKNLIDLLLYFGHGNEERKRKK 271
RG A+ + L K NL L + + N R +
Sbjct: 642 KGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPN--RYESE 699
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNNVHPHWM--MSLTDLRILTLSHCINCEHLPPLGKL 329
+ +VLEAL+P PNLK+L I + G + P WM L ++ + +S C NC LPP G+L
Sbjct: 700 EVKVLEALKPHPNLKYLEIIDFCGFCL-PDWMNHSVLKNVVSILISGCENCSCLPPFGEL 758
Query: 330 PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389
P LE L GSV+ VE + FP L+ + LK
Sbjct: 759 PCLESLELQD-GSVE--------VEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGL---QR 806
Query: 390 IKG-EIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWG 429
+KG E P L + I+ CP P ++++KLEIWG
Sbjct: 807 MKGAEQFPVLEEMKISDCPMF-VFP----TLSSVKKLEIWG 842
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 177/414 (42%), Gaps = 90/414 (21%)
Query: 1 QRPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVE 60
+ N E++ +G E ++ + RSFFQE KMHD++HD A L F+
Sbjct: 435 SKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF--KMHDLIHDLATSL-----FSAN 487
Query: 61 IDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQ 120
I + N M+ +G F V ++ P
Sbjct: 488 TSSSN---IREINANYDGYMMSIG--------FAEV-----------------VSSYSPS 519
Query: 121 LFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS-RLKIEKLPETLCELY 179
L + LR L+ N + ++P +I LVHLRYL+LS +I LP+ LC+L
Sbjct: 520 LLQKFVSLRVLNLR-------NSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQ 572
Query: 180 NLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR 239
NLQ L++ C L LP+ KL +L LL G SL P I LT L+ + FV+G+
Sbjct: 573 NLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGC-SLTSTPPRIGLLTCLKSLSCFVIGK 631
Query: 240 -----------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRK 270
A+ + L K NL L L + + + K +
Sbjct: 632 RKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW---DLDGKHR 688
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMS--LTDLRILTLSHCINCEHLPPLGK 328
D EVLEAL+P NLK+L I+ + G + P WM L ++ + + C NC LPP G+
Sbjct: 689 YDSEVLEALKPHSNLKYLEINGFGGIRL-PDWMNQSVLKNVVSIRIRGCENCSCLPPFGE 747
Query: 329 LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLK 382
LP LE L ++ GS E++ GR FP L+ + WD LK
Sbjct: 748 LPCLESLELHT-GSADV---EYVEDNVHPGR-------FPSLRKLVIWDFSNLK 790
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/429 (24%), Positives = 169/429 (39%), Gaps = 81/429 (18%)
Query: 11 GEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGREEPFID 70
GE+CF + R + K I++CK+HD+V D ++K + F+ +
Sbjct: 458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFS-----------N 506
Query: 71 SLGQNVRHSMVKLGKGAPFPISFCSVK-RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLR 129
G N RH LG F V +LR ++ + L L + F + LR
Sbjct: 507 PEGLNCRH----LGISGNFDEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLR 562
Query: 130 ALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQLLNVES 188
LD + ++ + EI I L HL L+LS + + P ++ +L+NLQ+L+
Sbjct: 563 VLDISKS---IFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASY 619
Query: 189 CQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRG--VARSSE 246
CQ+LK+L L+ L SL P GI L L + F R + SE
Sbjct: 620 CQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSE 679
Query: 247 LENKKNLIDLLLYFGHGNEERKRKKDEEV-----------------------LEALQPPP 283
++N NL L L G++ + + D + ++AL PP
Sbjct: 680 VKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISINCYDSYGDDLITKIDALTPPH 739
Query: 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSV 343
L L + Y G + P W L P KLP L + S G++
Sbjct: 740 QLHELSLQFYPGKS-SPSW--------------------LSP-HKLPMLRYMSICS-GNL 776
Query: 344 KRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCI 403
++ + F G E+ H R + L ++ DM +W+ + + MP L ++
Sbjct: 777 VKMQEPFWGNENTHWRIEGLM-----LSSLSDLDM----DWE----VLQQSMPYLRTVTA 823
Query: 404 ARCPTLRAL 412
CP L +
Sbjct: 824 NWCPELESF 832
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 178/457 (38%), Gaps = 84/457 (18%)
Query: 10 IGEECFDIIARRSFFQEFVKNDDDEIL---SCKMHDIVHDFAQFLSKNECFTVEIDGREE 66
+GE + + RR+ + D L +C +HD++ + +K E F V+I
Sbjct: 468 VGESYIEELVRRNMV---IAERDVTTLRFEACHLHDMMREVCLLKAKEENF-VQIASILP 523
Query: 67 PFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELT 126
P +S V + +L+SLLI + W ++L F L
Sbjct: 524 PTANSQYPGTSRRFVSQNPTTLHVSRDINNPKLQSLLIVWENRRKSW--KLLGSSFIRLE 581
Query: 127 CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNV 186
LR LD + N +P I KL+HLRYLNL ++ +LP +L L L L++
Sbjct: 582 LLRVLDLYKAKFEGRN-----LPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDI 636
Query: 187 ESC-----------------------QDLKELPQGFGKLINLMYLLN-----------RG 212
C KE+ G L+NL L N RG
Sbjct: 637 NVCTKSLFVPNCLMGMHELRYLRLPFNTSKEIKLGLCNLVNLETLENFSTENSSLEDLRG 696
Query: 213 TESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKR-KK 271
SLR L G+ + + K + + LEN L + G+ + KR +
Sbjct: 697 MVSLRTLTIGL-----FKHISKETLFASILGMRHLEN------LSIRTPDGSSKFKRIME 745
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEH-LPPLGKLP 330
D VL+A+ +LK L + Y P + L ++L C E LP L KL
Sbjct: 746 DGIVLDAI----HLKQLNLRLYMPK--LPDEQHFPSHLTSISLDGCCLVEDPLPILEKLL 799
Query: 331 SLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390
L++ V+ F G R SS FP+L + W + +EW +
Sbjct: 800 ELKE--------VRLDFRAFCG-----KRMVSSDGGFPQLHRLYIWGLAEWEEW----IV 842
Query: 391 KGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEI 427
+ MPRL +L I C L+ LPD L +++ L++
Sbjct: 843 EEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDM 879
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 187/456 (41%), Gaps = 94/456 (20%)
Query: 23 FFQEFVKND----DDEILS-----CKMHDIVHDFAQFLSKNECF-TVEIDGREEPFIDSL 72
+ +E V+ + DD LS C+MHD++ + +K E F + ID I++
Sbjct: 466 YLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQ 525
Query: 73 GQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRAL 131
+ R + + G F I + ++RSL++ ++++W+ +F LT LR L
Sbjct: 526 SPS-RSRRLSIHSGKAFHILGHKNKTKVRSLIVP-RFEEDYWIRSA--SVFHNLTLLRVL 581
Query: 132 DFAMFQMWSWNGF-IKEIPKNIEKLVHLRYLNLSRLKIEKLPET---------------- 174
D SW F ++P +I L+HLRYL+L K+ LP T
Sbjct: 582 DL------SWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDT 635
Query: 175 ---------LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIER 225
L E+ L+ L++ D K + G L+NL YL T+ + R
Sbjct: 636 EEPIHVPNVLKEMIQLRYLSLPLKMDDKTKLE-LGDLVNLEYLYGFSTQHSSV--TDLLR 692
Query: 226 LTSLRRVEKFVVGRG--VARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283
+T LR + + R SS L +NL L F E VL+
Sbjct: 693 MTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSL-ETYMVDYMGEFVLDHF---I 748
Query: 284 NLKHLGI----------HQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLE 333
+LK LG+ HQ+ + VH L L +C E P +P LE
Sbjct: 749 HLKQLGLAVRMSKIPDQHQFPPHLVH------------LFLIYC-GMEEDP----MPILE 791
Query: 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGE 393
+L + SV+ FLG R S FP+L I+ L+EW ++
Sbjct: 792 KL--LHLKSVRLARKAFLG-----SRMVCSKGGFPQLCVIEISKESELEEW----IVEEG 840
Query: 394 IMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWG 429
MP L +L I C L+ LPD L T+L++L+I G
Sbjct: 841 SMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEG 876
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 147/358 (41%), Gaps = 77/358 (21%)
Query: 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDF--AMFQMWSWNGFIKEIPKNIEKL 155
+LRSLL G F + F EL LR LD A F+ ++P +I KL
Sbjct: 549 KLRSLLFIPVGYSRF----SMGSNFIELPLLRVLDLDGAKFKG-------GKLPSSIGKL 597
Query: 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVE-SCQDLKELPQGFGKLINLMYL-LNRGT 213
+HL+YL+L + + LP +L L +L LN+ + L +P F +++ L YL L
Sbjct: 598 IHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWER 657
Query: 214 ESLRYLPAG--------------------IERLTSLRRVEKFVVGRGV---ARSSELENK 250
SL L G + R+T LR ++ + G G+ SS L
Sbjct: 658 SSLTKLELGNLLKLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSML 717
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310
+L DL + + + K K L P+++H H L
Sbjct: 718 GHLEDLTVTPSENSVQFKHPK----LIYRPMLPDVQHFPSH-----------------LT 756
Query: 311 ILTLSHC-INCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPK 369
++L +C + + +P L KL L+ + + V R R + FP
Sbjct: 757 TISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGR-------------RMVCTGGGFPP 803
Query: 370 LKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEI 427
L ++ W + L+EW ++ MP L +L I C L+ +PD L ++L++L I
Sbjct: 804 LHRLEIWGLDALEEW----IVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | ||||||
| 147825450 | 927 | hypothetical protein VITISV_000086 [Viti | 0.940 | 0.445 | 0.426 | 3e-88 | |
| 359482769 | 904 | PREDICTED: putative disease resistance p | 0.924 | 0.449 | 0.429 | 3e-88 | |
| 359482784 | 919 | PREDICTED: putative disease resistance p | 0.927 | 0.442 | 0.428 | 6e-87 | |
| 359482790 | 923 | PREDICTED: putative disease resistance p | 0.929 | 0.442 | 0.428 | 6e-86 | |
| 359482792 | 922 | PREDICTED: putative disease resistance p | 0.922 | 0.439 | 0.438 | 8e-86 | |
| 359482788 | 903 | PREDICTED: putative disease resistance p | 0.936 | 0.455 | 0.414 | 2e-83 | |
| 255549784 | 786 | leucine-rich repeat containing protein, | 0.958 | 0.535 | 0.397 | 5e-83 | |
| 224118674 | 960 | cc-nbs-lrr resistance protein [Populus t | 0.970 | 0.443 | 0.405 | 3e-81 | |
| 224143886 | 541 | predicted protein [Populus trichocarpa] | 0.970 | 0.787 | 0.405 | 4e-81 | |
| 224122696 | 906 | cc-nbs-lrr resistance protein [Populus t | 0.949 | 0.460 | 0.396 | 2e-80 |
| >gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 273/471 (57%), Gaps = 58/471 (12%)
Query: 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDG 63
+KE++++G F+ +A RSFFQ+F K+DD I+ CKMHDIVHDFAQFL++NECF VE+D
Sbjct: 460 SKEMEMVGRTYFEYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQNECFIVEVDN 519
Query: 64 REEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD 123
+++ +D Q +RH+ + + + P S C++K L +LL + B L E L L
Sbjct: 520 QKKGSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKEEFBISXVL-EALXNLLR 578
Query: 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSR-LKIEKLPETLCELYNLQ 182
LTCLRALD S N I+E+PK + KL+HLRYLNLS ++ +LPET+C+LYNLQ
Sbjct: 579 HLTCLRALDL------SRNRLIEELPKEVGKLIHLRYLNLSLCYRLRELPETICDLYNLQ 632
Query: 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR--- 239
LN+E C L++LPQ GKLINL +L N T SL+ LP GI RL+SL+ ++ F+V
Sbjct: 633 TLNIEGCSSLQKLPQAMGKLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSSHGN 692
Query: 240 -----------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRK 270
G A +EL+N+ + L L FG K++
Sbjct: 693 DECQIGDLRNLNNLRGGLSIQRLDEVKDAGEAEKAELKNRVHFQYLTLEFG------KKE 746
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLSHCINCEHLPPLGK 328
+ V EALQP PNLK L I Y G+ P+WMM SL L+IL + +C C LP LG+
Sbjct: 747 GTKGVAEALQPHPNLKSLDIFNY-GDREWPNWMMGSSLAQLKILEIGNCRRCPCLPLLGQ 805
Query: 329 LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD 388
LP LE+L + M VK +G EFLG SS FPKLK + M LK+W+
Sbjct: 806 LPVLEKLDIWGMDGVKYIGSEFLG---------SSSTVFPKLKELNISRMDELKQWEIKG 856
Query: 389 TIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
+ IMP L+ L CP L LPDH+LQ T LQKL I P L+++YR+
Sbjct: 857 KEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIIDSPILERRYRK 907
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 202/470 (42%), Positives = 279/470 (59%), Gaps = 64/470 (13%)
Query: 5 KEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGR 64
KE++++G F+ +A RSFFQ+F K+ D I+ C+MHDIVHDFAQFL++NECF VE+D +
Sbjct: 442 KEMEMVGRTYFEYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQ 501
Query: 65 EEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDE 124
++ +D Q +RH+ + + + P S C++K L +LL + D + VL L +
Sbjct: 502 KKGSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKEAFD-----SRVLEALGN- 555
Query: 125 LTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQL 183
LTCLRALD S N +I+E+PK + KL+HLRYLNLS + + +LPET+C+LYNLQ
Sbjct: 556 LTCLRALDL------SSNDWIEELPKEVGKLIHLRYLNLSWCESLRELPETICDLYNLQT 609
Query: 184 LNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVV------ 237
LN+E C L++LP GKLINL +L N T SL+ LP GI RL+SL+ ++ F+V
Sbjct: 610 LNIEGCSSLQKLPHAMGKLINLRHLENY-TRSLKGLPKGIGRLSSLQTLDVFIVSSHGND 668
Query: 238 --------------GR------------GVARSSELENKKNLIDLLLYFGHGNEERKRKK 271
GR G +EL+N+ + L L FG +++
Sbjct: 669 ECQIGDLRNLNNLRGRLSVEGLDEVKDAGEPEKAELKNRVHFQYLTLEFG------EKEG 722
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLSHCINCEHLPPLGKL 329
+ V EALQP PNLK LGI Y G+ P+WMM SL L+IL L C C LPPLG+L
Sbjct: 723 TKGVAEALQPHPNLKSLGIVDY-GDREWPNWMMGSSLAQLKILHLWFCKRCPCLPPLGQL 781
Query: 330 PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389
P LE+LY + M VK +G EFLG SS FPKLK + + LK+W+ +
Sbjct: 782 PVLEKLYIWGMDGVKYIGSEFLG---------SSSTVFPKLKELAISGLVELKQWEIKEK 832
Query: 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
+ IMP L+ L + CP L LPDH+LQ T LQKL+I G P L+++YR+
Sbjct: 833 EERSIMPCLNHLIMRGCPKLEGLPDHVLQRTPLQKLDIAGSPILKRRYRK 882
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 278/471 (59%), Gaps = 64/471 (13%)
Query: 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDG 63
+KE++++G E F+ +A RSFFQ+F K+ DD+I+ CKMHDIVHDFAQFL++NECF VE+D
Sbjct: 460 SKEMEMVGREYFEYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTQNECFVVEVDN 519
Query: 64 REEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD 123
+++ +D Q + H+ + + + S C++K L +LL D + VL L
Sbjct: 520 QKKGSMDLFFQKICHATLVVQESTLNFASTCNMKNLHTLLAKSAFD-----SRVLEAL-G 573
Query: 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQ 182
LTCLRALD SWN I+E+PK + KL+HLRYL+LSR + + +LPET+C+LYNLQ
Sbjct: 574 HLTCLRALDL------SWNQLIEELPKEVGKLIHLRYLDLSRCQSLRELPETICDLYNLQ 627
Query: 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR--- 239
LN++ C L++LPQ GKLINL +L N T SL+ LP GI RL+SL+ ++ F+V
Sbjct: 628 TLNIQYCISLQKLPQAMGKLINLRHLENY-TRSLKGLPKGIGRLSSLQTLDVFIVSSHGN 686
Query: 240 -----------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRK 270
G A +EL+N+ +L L L FG G E K
Sbjct: 687 DECQIGDLRNLNNLRGGLSIQGLDEVKDAGEAEKAELKNRVSLHRLALVFG-GEEGTKG- 744
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLSHCINCEHLPPLGK 328
V EALQP PNLK L I+ Y G+ P+WMM SL L+IL + +C C LPPLG+
Sbjct: 745 ----VAEALQPHPNLKSLCIYGY-GDREWPNWMMGSSLAQLKILEIGNCRRCPCLPPLGQ 799
Query: 329 LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD 388
LP LE+L + M V +G EFLG SS FPKLK ++ + + LK+W+ +
Sbjct: 800 LPVLEKLVIWKMYGVIYIGSEFLG---------SSSTVFPKLKELRIFGLDELKQWEIKE 850
Query: 389 TIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
+ IMP L+ L CP L LPDH+LQ T LQKL I G P L+++Y +
Sbjct: 851 KEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYIEGSPILKRRYGK 901
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 274/471 (58%), Gaps = 63/471 (13%)
Query: 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDG 63
+KE++++G F+ +A RSFFQ+F K+DD I+ CKMHDIVHDFAQFL+ NECF VE+D
Sbjct: 461 SKEMEMVGRTYFEYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDN 520
Query: 64 REEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD 123
+++ +D Q +RH+ + + + P S C++K L +LL D + VL L
Sbjct: 521 QKKGSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKRAFD-----SRVLEAL-G 574
Query: 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRL-KIEKLPETLCELYNLQ 182
LTCLRALD N I+E+PK + KL+HLRYLNLS + +LPET+C+LYNLQ
Sbjct: 575 HLTCLRALDLRS------NQLIEELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYNLQ 628
Query: 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVV----- 237
LN+++C L++LPQ GKLINL +L N + L+ LP GI RL+SL+ ++ F+V
Sbjct: 629 TLNIQACSRLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSSHGN 688
Query: 238 ---------------GR------------GVARSSELENKKNLIDLLLYFGHGNEERKRK 270
GR G A +EL+N+ +L L L FG G E K
Sbjct: 689 DECQIEDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELQNRVHLQRLTLEFG-GEEGTKG- 746
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLSHCINCEHLPPLGK 328
V EALQP PNLK L I +Y G+ P+WMM SL L+IL L CI C LPPLG+
Sbjct: 747 ----VAEALQPHPNLKFLCIIRY-GDREWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQ 801
Query: 329 LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD 388
LP LE+L M +K +G EFLG SS FPKLK + + + LK+W+ +
Sbjct: 802 LPVLEELGICFMYGLKYIGSEFLG---------SSSTVFPKLKGLYIYGLDELKQWEIKE 852
Query: 389 TIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
+ IMP L++L CP L LPDH+LQ LQKL I P L+++YR+
Sbjct: 853 KEERSIMPCLNALRAQHCPKLEGLPDHVLQRAPLQKLNIKYSPVLERRYRK 903
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 206/470 (43%), Positives = 276/470 (58%), Gaps = 65/470 (13%)
Query: 5 KEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGR 64
KE++++G F+ +A RSFFQ+F K+DD I+ CKMHDIVHDFAQFL++NECF VE+D +
Sbjct: 461 KEMEMVGRTYFEYLAARSFFQDFEKDDDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQ 520
Query: 65 EEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDE 124
++ +D Q +RH+ + + + P S C++K L +LL D + VL L +
Sbjct: 521 KKGSMDLFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKKAFD-----SRVLEALGN- 574
Query: 125 LTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSR-LKIEKLPETLCELYNLQL 183
LTCLRALD S N I+E+PK + KL+HLRYLNLS + +LPET+C+LYNLQ
Sbjct: 575 LTCLRALDL------SRNRLIEELPKEVGKLIHLRYLNLSLCYSLRELPETICDLYNLQT 628
Query: 184 LNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVV------ 237
LN++ C +++LPQ GKLINL +L N T L+ LP GI RL+SL+ ++ F+V
Sbjct: 629 LNIQGCI-IRKLPQAMGKLINLRHLENYNTR-LKGLPKGIGRLSSLQTLDVFIVSSHGND 686
Query: 238 --------------GR------------GVARSSELENKKNLIDLLLYFGHGNEERKRKK 271
GR G A +EL+NK L L L FG G E K
Sbjct: 687 ECQIGDLRNLNNLRGRLSIQGLDEVKDAGEAEKAELKNKVYLQRLELKFG-GEEGTK--- 742
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLSHCINCEHLPPLGKL 329
V EALQP PNLK L I Y G+ P+WMM SL L+IL L CI C LPPLG+L
Sbjct: 743 --GVAEALQPHPNLKSLDIFNY-GDREWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQL 799
Query: 330 PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389
P LE+L +M V+ +G EFLG SS FPKLK ++ +M LK+W+ +
Sbjct: 800 PILEELGILNMHGVQYIGSEFLG---------SSSTVFPKLKKLRISNMKELKQWEIKEK 850
Query: 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
+ IMP L+ L + CP L LPDH+LQ T LQKL I P L+++YR+
Sbjct: 851 EERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQKLYIKYSPILERRYRK 900
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 267/471 (56%), Gaps = 60/471 (12%)
Query: 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDG 63
+KE+++IG F+ +A RSFFQ+F K+ D I+ CKMHDIVHDFAQFL++NECF VE+D
Sbjct: 438 SKEMEMIGRTYFEYLAARSFFQDFEKDTDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDN 497
Query: 64 REEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD 123
++ ID + +RH + + + P +S ++K L +LL + + LP L
Sbjct: 498 QQMESIDLSFKKIRHITLVVRESTPNFVSTYNMKNLHTLLAKEAFKSSVLVA--LPNLLR 555
Query: 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSR-LKIEKLPETLCELYNLQ 182
LTCLRALD S N I+E+PK + KL+HLR+LNLS + +LPET+C+LYNLQ
Sbjct: 556 HLTCLRALDL------SSNQLIEELPKEVGKLIHLRFLNLSGCFWLRELPETICDLYNLQ 609
Query: 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR--- 239
LN++ C L++LPQ GKLINL +L N + + LP GI RL+SL+ + F+V
Sbjct: 610 TLNIQGCSSLRKLPQAMGKLINLRHLENSFLNN-KGLPKGIGRLSSLQTLNVFIVSSHGN 668
Query: 240 -----------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRK 270
G A +EL+NK +L DL L F + +
Sbjct: 669 DEGQIGDLRNLNNLRGDLSIQGLDEVKDAGEAEKAELKNKVHLQDLTLGFD------REE 722
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM--SLTDLRILTLSHCINCEHLPPLGK 328
+ V EALQP PNLK L I+ Y G+ P+WMM SL L+IL L C C LPPLG+
Sbjct: 723 GTKGVAEALQPHPNLKALHIYYY-GDREWPNWMMGSSLAQLKILNLKFCERCPCLPPLGQ 781
Query: 329 LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD 388
LP LE+L + M VK +G EFLG SS FPKLK + + LK+W+ +
Sbjct: 782 LPVLEELGIWKMYGVKYIGSEFLG---------SSSTVFPKLKELAISGLDKLKQWEIKE 832
Query: 389 TIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
+ IMP L+ L + CP L LP H+LQ TTLQ L I P L+++YR+
Sbjct: 833 KEERSIMPCLNHLIMRGCPKLEGLPGHVLQRTTLQILNIRSSPILERRYRK 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 274/475 (57%), Gaps = 54/475 (11%)
Query: 6 EIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGRE 65
+++ IGE+ +A SFF+ K D ++SCKM++IVHDFAQ++ KNECF++E++ E
Sbjct: 267 DMERIGEKYLHNLAGHSFFEVVHKIDCGHVMSCKMYNIVHDFAQYIVKNECFSIEVNDEE 326
Query: 66 EPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDEL 125
E + SL + VRH V LGK FP S +K LR+L + G+ + + L LF L
Sbjct: 327 ELKMMSLHKEVRHLRVMLGKDVSFPSSIYRLKDLRTLWVQCKGNSK--VGAALSNLFGRL 384
Query: 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQLL 184
TCLR+L+ + N + EIP +I KL+HLR ++LS K ++ LPE LCEL NLQ L
Sbjct: 385 TCLRSLNLS-------NCNLAEIPSSICKLIHLRQIDLSYNKDLKGLPEALCELCNLQTL 437
Query: 185 NVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR----- 239
N++ C L +LP+G KLINL +L N G E + LP GI +LT LR + +F +G+
Sbjct: 438 NMDGCFSLVKLPRGLEKLINLRHLHNGGFEGV--LPKGISKLTCLRSLNRFSIGQNNQEA 495
Query: 240 ---------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRKKD 272
G A+ +EL K + L L FG G+ E ++ D
Sbjct: 496 CNLGDLKNLNHLQGCLCIMGLEIVADVGEAKQAELRKKTEVTRLELRFGKGDAEWRKHHD 555
Query: 273 EEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSL 332
+E+L AL+P P ++ LGI+ Y+G V P WM+ L++L+ + L++C CEHLPPLGKLP L
Sbjct: 556 DEILLALEPSPYVEELGIYDYQGRTVFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLPFL 615
Query: 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEW-------- 384
E L + M V++ G EFLG+ES +S +AFPKL ++F M + W
Sbjct: 616 ENLRIWGMDGVQKAGLEFLGLESSSSSSSG--IAFPKLINLRFMRMRNWEVWADDFIRMG 673
Query: 385 DYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQYRR 439
D D+ K IMP+L SL A C L+A+PD L+ TLQ+L + P L++ Y++
Sbjct: 674 DEEDSTKITIMPQLRSLSFAWCSKLKAVPDQFLRKATLQELTLTCSPELKRAYQK 728
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118674|ref|XP_002317879.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222858552|gb|EEE96099.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 261/471 (55%), Gaps = 45/471 (9%)
Query: 5 KEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGR 64
KE +++G++ F+ + RSFFQ +K+ + +CK+HD+VH+FAQFL++N+C VE+
Sbjct: 458 KEEELVGKDYFENLIARSFFQNAIKDGNGSTAACKVHDLVHEFAQFLTENDCVNVEVSSH 517
Query: 65 EEPFIDSLGQNVRHSMVKLG-KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD 123
+ S VRH ++ + A FP+SF S+K LRSLL+D D + L
Sbjct: 518 GVIGMVSSWDKVRHLKIEFSERNASFPVSFASLKNLRSLLVDYCKSDYPIVIGNQDDLLS 577
Query: 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS-RLKIEKLPETLCELYNLQ 182
LTCLRAL + +EI I KL+HLRYL+LS ++ LPE + ELYNLQ
Sbjct: 578 RLTCLRALKLSHISS-------EEISDKIGKLIHLRYLDLSDNQHLKYLPEEIGELYNLQ 630
Query: 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG---R 239
LN+ C +L+ LP G +LINL +L N T+ L ++P GIERLTSL+ + KFVV
Sbjct: 631 TLNLSGCCELQRLPYGLCRLINLRHLNNYHTDKLTFMPRGIERLTSLKSLYKFVVNCSYH 690
Query: 240 GVARSSELENKKNLIDLLLYF---GHGNEERK---------------------------- 268
SS L + +NL L Y G GN
Sbjct: 691 SRELSSTLGDLQNLNYLRKYLEISGLGNSTDMISEARKAQLKKKKQLVTLKLSFVECRAL 750
Query: 269 -RKKDEEVLEALQPPPNLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCINCEHLPPL 326
+DEE+++AL+PPP+L+HL I Y G + P+WMM L L + +S C NC +LPPL
Sbjct: 751 IHDQDEEIIQALEPPPSLEHLEIEHYGGIKMKIPNWMMQLAKLSKICISKCRNCNNLPPL 810
Query: 327 GKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDY 386
GKLP LE L M SV +VGDEFLG+E++H AFPKLK ++F MY EWD
Sbjct: 811 GKLPFLEYLEISDMRSVHKVGDEFLGIETNHKENEDKKKAFPKLKELRFSHMYAWDEWDA 870
Query: 387 GDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQY 437
++ E+MP L L I C L ALP LLQ TTL++L + C +L QY
Sbjct: 871 LIALEEEVMPCLLRLYIGFCDKLEALPAQLLQMTTLEELAVDHCGSLGGQY 921
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143886|ref|XP_002336089.1| predicted protein [Populus trichocarpa] gi|222872018|gb|EEF09149.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 261/471 (55%), Gaps = 45/471 (9%)
Query: 5 KEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGR 64
KE +++G++ F+ + RSFFQ +K+ + +CK+HD+VH+FAQFL++N+C VE+
Sbjct: 39 KEEELVGKDYFENLIARSFFQNAIKDGNGSTAACKVHDLVHEFAQFLTENDCVNVEVSSH 98
Query: 65 EEPFIDSLGQNVRHSMVKLG-KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD 123
+ S VRH ++ + A FP+SF S+K LRSLL+D D + L
Sbjct: 99 GVIGMVSSWDKVRHLKIEFSERNASFPVSFASLKNLRSLLVDYCKSDYPIVIGNQDDLLS 158
Query: 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS-RLKIEKLPETLCELYNLQ 182
LTCLRAL + +EI I KL+HLRYL+LS ++ LPE + ELYNLQ
Sbjct: 159 RLTCLRALKLSHISS-------EEISDKIGKLIHLRYLDLSDNQHLKYLPEEIGELYNLQ 211
Query: 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVA 242
LN+ C +L+ LP G +LINL +L N T+ L ++P GIERLTSL+ + KFVV
Sbjct: 212 TLNLSGCCELQRLPYGLCRLINLRHLNNYHTDKLTFMPRGIERLTSLKSLYKFVVNCSYH 271
Query: 243 R---SSELENKKNLIDLLLYF---GHGNEERK---------------------------- 268
SS L + +NL L Y G GN
Sbjct: 272 SRELSSTLGDLQNLNYLRKYLEISGLGNSTDMISEARKAQLKKKKQLVTLKLSFVECRAL 331
Query: 269 -RKKDEEVLEALQPPPNLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCINCEHLPPL 326
+DEE+++AL+PPP+L+HL I Y G + P+WMM L L + +S C NC +LPPL
Sbjct: 332 IHDQDEEIIQALEPPPSLEHLEIEHYGGIKMKIPNWMMQLAKLSKICISKCRNCNNLPPL 391
Query: 327 GKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDY 386
GKLP LE L M SV +VGDEFLG+E++H AFPKLK ++F MY EWD
Sbjct: 392 GKLPFLEYLEISDMRSVHKVGDEFLGIETNHKENEDKKKAFPKLKELRFSHMYAWDEWDA 451
Query: 387 GDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQKQY 437
++ E+MP L L I C L ALP LLQ TTL++L + C +L QY
Sbjct: 452 LIALEEEVMPCLLRLYIGFCDKLEALPAQLLQMTTLEELAVDHCGSLGGQY 502
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 191/482 (39%), Positives = 284/482 (58%), Gaps = 65/482 (13%)
Query: 6 EIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGRE 65
+++++GE+ F ++A RSFFQ+F + D+DE ++ KMHDIVHDFAQ+++KNEC TV+++
Sbjct: 417 DMELVGEQYFQVLAARSFFQDF-ETDEDEGMTFKMHDIVHDFAQYMTKNECLTVDVNTLG 475
Query: 66 EPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDEL 125
+++ + VRH + L FP+S K LRSLLID L LP LF +L
Sbjct: 476 GATVETSIERVRHLSMMLPNETSFPVSIHKAKGLRSLLIDTRDPS---LGAALPDLFKQL 532
Query: 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSR-LKIEKLPETLCELYNLQLL 184
TC+R+L+ + Q IKEIP + KL+HLR+LNL+ +++E LPET+C+L NLQ L
Sbjct: 533 TCIRSLNLSRSQ-------IKEIPNEVGKLIHLRHLNLAWCVELESLPETICDLCNLQSL 585
Query: 185 NVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRG---- 240
+V C+ LKELP+ GKLI L +L + + ++P GIER+T LR ++KF V G
Sbjct: 586 DVTWCRSLKELPKAIGKLIKLRHLWI-DSSGVAFIPKGIERITCLRTLDKFTVCGGGENE 644
Query: 241 --------------------VARSSELENKKNLIDLLL-----------YFGHGNEERKR 269
+ + ++EN ++++D LL + G + K
Sbjct: 645 SKAANLRELKNLNHIGGSLRIDKVRDIENVRDVVDALLNKKRLLCLEWNFKGVDSILVKT 704
Query: 270 KKDE---EVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPL 326
+ E ++E L+PP +L++L I Y G ++ P+WMM+LT LR+L+L C N E LPPL
Sbjct: 705 ELPEHEGSLIEVLRPPSDLENLTIRGYGGLDL-PNWMMTLTRLRMLSLGPCENVEVLPPL 763
Query: 327 GKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRAS-SSVVAFPKLKTIQFWDMYVLKEWD 385
G+LP+LE+L + + V+R+ FLGVE D + V AFPKLK+ + + ++EWD
Sbjct: 764 GRLPNLERLLLFFL-KVRRLDAGFLGVEKDENEGEIARVTAFPKLKSFRIRYLEEIEEWD 822
Query: 386 YGDTIKGE----------IMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQK 435
+ GE IMP+L L I +CP LRALPD++L LQ+LEI GCPNL
Sbjct: 823 GIERRVGEEDANTTSIISIMPQLQYLGIRKCPLLRALPDYVL-AAPLQELEIMGCPNLTN 881
Query: 436 QY 437
+Y
Sbjct: 882 RY 883
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 439 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.507 | 0.156 | 0.344 | 3.4e-27 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.692 | 0.288 | 0.286 | 6.3e-19 | |
| TAIR|locus:2031366 | 898 | AT1G63350 "AT1G63350" [Arabido | 0.863 | 0.422 | 0.229 | 1.5e-12 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.400 | 0.193 | 0.286 | 5.3e-12 | |
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.425 | 0.207 | 0.253 | 1.4e-09 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.813 | 0.394 | 0.253 | 1.4e-09 | |
| TAIR|locus:2037623 | 899 | AT1G58410 [Arabidopsis thalian | 0.820 | 0.400 | 0.251 | 1.8e-09 | |
| TAIR|locus:2152536 | 908 | AT5G48620 [Arabidopsis thalian | 0.822 | 0.397 | 0.260 | 2.3e-09 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.621 | 0.229 | 0.247 | 7.1e-09 | |
| TAIR|locus:2078012 | 852 | ZAR1 "HOPZ-ACTIVATED RESISTANC | 0.808 | 0.416 | 0.221 | 7.6e-09 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
Identities = 83/241 (34%), Positives = 132/241 (54%)
Query: 2 RPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEI 61
R ++ ++ IG + + +SFFQ D + S MHD+++D A+ +S + CF +E
Sbjct: 453 RSSRRLEDIGNDYLGDLVAQSFFQRL----DITMTSFVMHDLMNDLAKAVSGDFCFRLED 508
Query: 62 DGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGD--DEFWLTE-VL 118
D E I S ++ S + F S C + LR++L ++ + LTE VL
Sbjct: 509 DNIPE--IPSTTRHFSFSRSQCDASVAFR-SICGAEFLRTILPFNSPTSLESLQLTEKVL 565
Query: 119 PQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCEL 178
L + L+ LR L + +Q I +PK+++ L LRYL+LS KI++LPE +C L
Sbjct: 566 NPLLNALSGLRILSLSHYQ-------ITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTL 618
Query: 179 YNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG 238
NLQ L + +C+DL LP+ +LINL L GT + +P GI++L SL+++ FV+G
Sbjct: 619 CNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFVIG 677
Query: 239 R 239
R
Sbjct: 678 R 678
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 96/335 (28%), Positives = 163/335 (48%)
Query: 119 PQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCE 177
P F ++ R LD + ++ +++PK++ + +L+ L LS +++LP +
Sbjct: 595 PDFFKNISHARFLDLSRTEL-------EKLPKSLCYMYNLQTLLLSYCSSLKELPTDISN 647
Query: 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLN---RGTESLRYLP-AGIERLTS-LRRV 232
L NL+ L++ + L+++P+ FG+L +L L ++ R G+ L L+ V
Sbjct: 648 LINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIV 706
Query: 233 E-KFVVGRGVARSSELENKKNL--IDLLLYFGHGNEERK----RKKDE-EVLEALQPPPN 284
E + VV A + L +KK+L ID + G + E R ++E EV E L+P +
Sbjct: 707 ELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRH 766
Query: 285 LKHLGIHQYRGNNVHPHWMMSLTDLRI--LTLSHCINCEHLPPLGKLPSLEQLYFYSMGS 342
++ L I +Y+G P W+ + RI + L C C LP LG+LP L++L+ M
Sbjct: 767 IEKLAIERYKGRRF-PDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVG 825
Query: 343 VKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLC 402
++ +G +F SD F L+T++F ++ +EW +G++ P L L
Sbjct: 826 LQSIGRKFYF--SDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLF 883
Query: 403 IARCPTLRA-LPDHLLQTTTLQKLEIWGCPNLQKQ 436
I RCP L LP L +L L I+ C L Q
Sbjct: 884 ILRCPELTGTLPTFL---PSLISLHIYKCGLLDFQ 915
|
|
| TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 94/410 (22%), Positives = 161/410 (39%)
Query: 11 GEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLS-----KNECFTVEIDGRE 65
G E + R S E V+ D I+ C +HD+V + A +++ +NE F V
Sbjct: 448 GYEIIGSLVRASLLMEEVELDGANIV-C-LHDVVREMALWIASDLGKQNEAFIVRASVGL 505
Query: 66 EPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDEL 125
+ NV M + L +LL+ L ++ + F+ +
Sbjct: 506 REILKVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQSTH-----LEKISSEFFNSM 560
Query: 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLN 185
L LD S N ++ E+P I +LV L+YLNLS I LP+ L EL L L
Sbjct: 561 PKLAVLDL------SGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLY 614
Query: 186 VESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV--VGRGVAR 243
+E L + G L NL L G+ L ++ L +L +E +
Sbjct: 615 LERTSQLGSMV-GISCLHNLKVLKLSGSSYAWDLDT-VKELEALEHLEVLTTTIDDCTLG 672
Query: 244 SSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWM 303
+ + + L+ + + N + + + + L+ I + + +
Sbjct: 673 TDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMD-RLQEFTIEHCHTSEIKMGRI 731
Query: 304 MSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSS 363
S + L + LS+C L L P+L++L+ S + ++ + E H S
Sbjct: 732 CSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQL----EDIINKEKAHDGEKSG 787
Query: 364 VVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALP 413
+V FPKL + +++ LK Y + P L + + CP L+ LP
Sbjct: 788 IVPFPKLNELHLYNLRELKNI-YWSPLP---FPCLEKINVMGCPNLKKLP 833
|
|
| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 57/199 (28%), Positives = 95/199 (47%)
Query: 23 FFQEFVKND----DDEILS-----CKMHDIVHDFAQFLSKNECFT-VEIDGREEPFIDSL 72
+ +E V+ + DD LS C+MHD++ + +K E F + ID I++
Sbjct: 466 YLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQ 525
Query: 73 GQNVRHSMVKLGKGAPFPISFCSVK-RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRAL 131
+ R + + G F I K ++RSL++ ++++W+ +F LT LR L
Sbjct: 526 SPS-RSRRLSIHSGKAFHILGHKNKTKVRSLIVP-RFEEDYWIRSA--SVFHNLTLLRVL 581
Query: 132 DFAMFQMWSWNGFIK-EIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVE-SC 189
D SW F ++P +I L+HLRYL+L K+ LP T+ L L LN+
Sbjct: 582 DL------SWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDT 635
Query: 190 QDLKELPQGFGKLINLMYL 208
++ +P ++I L YL
Sbjct: 636 EEPIHVPNVLKEMIQLRYL 654
|
|
| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 51/201 (25%), Positives = 88/201 (43%)
Query: 11 GEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFT--VEIDGREEPF 68
GE+ + + RR+ N + C+MHD++ + +K E F +++
Sbjct: 457 GEDYLEELVRRNLVIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTI 516
Query: 69 IDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCL 128
I R V GK F I K++RSLL+ +D W+ F L L
Sbjct: 517 IAQSPSRSRRLTVHSGKA--FHI-LGHKKKVRSLLVLGLKED-LWIQSA--SRFQSLPLL 570
Query: 129 RALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVES 188
R LD + + + G ++P +I L+HLR+L+L + + LP T+ L + LN+
Sbjct: 571 RVLDLSSVK---FEG--GKLPSSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHV 625
Query: 189 CQDLK-ELPQGFGKLINLMYL 208
+ +P +++ L YL
Sbjct: 626 AIGVPVHVPNVLKEMLELRYL 646
|
|
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 102/403 (25%), Positives = 166/403 (41%)
Query: 38 CKMHDIVHDFAQFLSKNECFT-VEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSV 96
C++HD++ + +K E F + D + SL + +V +
Sbjct: 488 CQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKN 547
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDF--AMFQMWSWNGFIKEIPKNIEK 154
+LRSLL G F + F EL LR LD A F+ G ++P +I K
Sbjct: 548 SKLRSLLFIPVGYSRF----SMGSNFIELPLLRVLDLDGAKFK----GG---KLPSSIGK 596
Query: 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVE-SCQDLKELPQGFGKLINLMYL-LNRG 212
L+HL+YL+L + + LP +L L +L LN+ + L +P F +++ L YL L
Sbjct: 597 LIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWE 656
Query: 213 TESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKD 272
SL L G L L + F K + +L+ G G
Sbjct: 657 RSSLTKLELG--NLLKLETLINFSTKDSSVTDLHRMTKLRTLQILIS-GEGLHMETLSSA 713
Query: 273 EEVLEALQ-----PPPN---LKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP 324
+L L+ P N KH + YR + P + L ++L +C E P
Sbjct: 714 LSMLGHLEDLTVTPSENSVQFKHPKLI-YRP--MLPDVQHFPSHLTTISLVYCF-LEEDP 769
Query: 325 PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEW 384
+P+LE+L + S+ + ++G R + FP L ++ W + L+EW
Sbjct: 770 ----MPTLEKLLQLKVVSLWY--NAYVG-----RRMVCTGGGFPPLHRLEIWGLDALEEW 818
Query: 385 DYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEI 427
++ MP L +L I C L+ +PD L ++L++L I
Sbjct: 819 ----IVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857
|
|
| TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 103/409 (25%), Positives = 174/409 (42%)
Query: 37 SCKMHDIVHDFAQFLSKNECFTVEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSV 96
+C++HD++ + F +K E F ++I P + V + +
Sbjct: 490 TCRLHDMMREICLFKAKEENF-LQIVSNHSPTSNPQTLGASRRFVLHNPTTLHVERYKNN 548
Query: 97 KRLRSLLI--DDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154
+LRSL++ DD G+ + L+ +F + LR LD + + G ++P +I K
Sbjct: 549 PKLRSLVVVYDDIGNRRWMLSG---SIFTRVKLLRVLDLVQAK---FKG--GKLPSDIGK 600
Query: 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYL-LNR 211
L+HLRYL+L K+ LP +L L L L++ + D ++ P F + L YL L R
Sbjct: 601 LIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRT--DFTDIFVPNVFMGMRELRYLELPR 658
Query: 212 GTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLI---DLLLYFGHGNEERK 268
L + L L +E F +SS LE+ + ++ L++ G +
Sbjct: 659 FMHEKTKLE--LSNLEKLEALENFST-----KSSSLEDLRGMVRLRTLVIILSEGTSLQT 711
Query: 269 RKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGK 328
L L+ +++ G+++ G ++ T L+ LTLS I LP +
Sbjct: 712 LSASVCGLRHLENFKIMENAGVNRM-GEE---RMVLDFTYLKKLTLS--IEMPRLPKIQH 765
Query: 329 LPS-----------LEQLYFYSMGSVKRVGDEFLGVESDHGRAS-SSVVAFPKLKTIQFW 376
LPS LE+ + + + D L S GR S FP+L+ +
Sbjct: 766 LPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRKLALD 825
Query: 377 DMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKL 425
+ +EW+ +G M RL +L I TL+ LPD L +L+ L
Sbjct: 826 EQ---EEWEEWIVEEGS-MSRLHTLSIWSS-TLKELPDGLRFIYSLKNL 869
|
|
| TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 108/414 (26%), Positives = 175/414 (42%)
Query: 38 CKMHDIVHDFAQFLSKNECFTVEI-DGREEPFIDSLGQNVRHSMVKLGKGAPFPI-SFCS 95
C+MHD++ + +K E F I D I++ + R + G F I +
Sbjct: 490 CQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQSPS-RSRRFSIHSGKAFHILGHRN 548
Query: 96 VKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155
++RSL++ +++FW+ +F LT LR LD + + + G ++P +I L
Sbjct: 549 NPKVRSLIVS-RFEEDFWIRSA--SVFHNLTLLRVLDLSRVK---FEG--GKLPSSIGGL 600
Query: 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKE---LPQGFGKLINLMYL-LNR 211
+HLRYL+L + LP T+ L L LN+ D KE +P +++ L YL L +
Sbjct: 601 IHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRV--DNKEPIHVPNVLKEMLELRYLSLPQ 658
Query: 212 GTESLRYLPAGIERLTSLRRVEKFVVGRG----VARSSELENKKNLIDLLLYFGHGNEER 267
+ L G L +L + F + R ++L N + F +
Sbjct: 659 EMDDKTKLELG--DLVNLEYLWYFSTQHSSVTDLLRMTKLRNLGVSLSERCNFETLSSSL 716
Query: 268 KRKKDEEVLEALQPPP--NLKHLG-------IH-QYRGNNVH----PHWMMSLTDLRILT 313
+ ++ E+L L P + H+G IH + G V P L +
Sbjct: 717 RELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLAHIH 776
Query: 314 LSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTI 373
L HC+ E P +P LE+L + SV F+G R S FP+L +
Sbjct: 777 LVHCVMKED-P----MPILEKLLH--LKSVALSYGAFIG-----RRVVCSKGGFPQLCAL 824
Query: 374 QFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEI 427
L+EW ++ MP L +L I C L+ LPD L T+L++L+I
Sbjct: 825 GISGESELEEW----IVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKI 874
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 168 (64.2 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 75/303 (24%), Positives = 132/303 (43%)
Query: 145 IKEIP--KNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202
+KE+P L LR +N L + +LP ++ NL L++ C L +LP G L
Sbjct: 670 LKELPDFSTATNLQELRLINC--LSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNL 727
Query: 203 INLMYL-LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENK-KNLIDLLLYF 260
NL L LNR SL LP+ +TSL+ + G + E+ + N+++L +
Sbjct: 728 TNLKKLFLNR-CSSLVKLPSSFGNVTSLKELNL----SGCSSLLEIPSSIGNIVNLKKVY 782
Query: 261 GHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINC 320
G ++ ++ NLK L + P M++LT L L LS C++
Sbjct: 783 ADGCSSLV-----QLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSL 837
Query: 321 EHLPPLGKLPSLEQLYFYSMGSVKRVG---DEFLGVESDHGRASSSVVAFPKL--KTIQF 375
LP +G + +L+ LY S+ + + +++ + S+++ P
Sbjct: 838 VKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNL 897
Query: 376 WDMYV-----LKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430
+Y+ LKE ++ I L SL + +C +L LP + + + L L++ C
Sbjct: 898 QSLYLNGCSSLKELP--SLVENAI--NLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNC 953
Query: 431 PNL 433
+L
Sbjct: 954 SSL 956
|
|
| TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 92/415 (22%), Positives = 177/415 (42%)
Query: 11 GEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGREEPFID 70
GE+CF + R + K I++CK+HD+V D ++K + F+ +G +
Sbjct: 458 GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFS-NPEGLNCRHLG 516
Query: 71 SLGQNVRHSMVKLG---KGAPFPISFCSVKRLRSLLIDDNGDDEFW-LTEV--------L 118
G N +K+ +G V +L S L D ++ + ++ L
Sbjct: 517 ISG-NFDEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPL 575
Query: 119 PQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCE 177
++ DE+ L+ L A + + + I + P+++E L +L+ L+ S + +++L +
Sbjct: 576 SEILDEIASLQHL--ACLSLSNTHPLI-QFPRSMEDLHNLQILDASYCQNLKQLQPCIVL 632
Query: 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLN----RGTESLRYLPAGIERLTSLRRVE 233
L +L++ +C L+ P+G G L+ L LL R + + ++ LT+LR++
Sbjct: 633 FKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKL--SEVKNLTNLRKL- 689
Query: 234 KFVVGRGVARSSELENKK--NLIDLLLYFGHGNEERKRKKDEEV--LEALQPPPNLKHLG 289
G + R ++E ++ +LI+L D+ + ++AL PP L L
Sbjct: 690 ----GLSLTRGDQIEEEELDSLINLSKLMSISINCYDSYGDDLITKIDALTPPHQLHELS 745
Query: 290 IHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDE 349
+ Y G + P W+ H KLP L + S G++ ++ +
Sbjct: 746 LQFYPGKS-SPSWLSP----------H-----------KLPMLRYMSICS-GNLVKMQEP 782
Query: 350 FLGVESDHGRASSSVVAFPKLKTIQF-WDMYVLKEWDYGDTIKGEIMPRLSSLCI 403
F G E+ H R +++ L + W++ + + Y T+ P L S I
Sbjct: 783 FWGNENTHWRIEGLMLS--SLSDLDMDWEV-LQQSMPYLRTVTANWCPELESFAI 834
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 439 | |||
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-06 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.001 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.003 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.004 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 6e-06
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 145 IKEIPKNIEKLV-HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203
I +IP I L +L+ L+LS KIE LP L L NL+ L++ L +LP+ L
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLS 186
Query: 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS--SELENKKNLIDLLLYFG 261
NL L G + + LP IE L++L E+ + S L N KNL L L
Sbjct: 187 NLNNLDLSGNK-ISDLPPEIELLSAL---EELDLSNNSIIELLSSLSNLKNLSGLEL--- 239
Query: 262 HGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCE 321
N+ E++ E++ NL+ L + + +++ + SLT+LR L LS
Sbjct: 240 SNNKL------EDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291
Query: 322 HLPPLGKLPSLEQL 335
LP + L L +L
Sbjct: 292 ALPLIALLLLLLEL 305
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 51/167 (30%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRAL-----DFA-------- 134
P P S S+++L SL + DN L+ +P+L +L L L +F
Sbjct: 275 PIPPSIFSLQKLISLDLSDNS-----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329
Query: 135 ------MFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLL--- 184
+ Q+WS N F EIPKN+ K +L L+LS + ++PE LC NL L
Sbjct: 330 SLPRLQVLQLWS-NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388
Query: 185 ----------NVESCQDLK-----------ELPQGFGKLINLMYLLN 210
++ +C+ L+ ELP F KL L+Y L+
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLD 434
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
L +L + N LP + L+ L LD + N I E+ ++ L
Sbjct: 186 SNLNNLDLSGN------KISDLPPEIELLSALEELDLS-------NNSIIELLSSLSNLK 232
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216
+L L LS K+E LPE++ L NL+ L++ + Q + + G L NL L G
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSIS-SLGSLTNLRELDLSGNSLS 290
Query: 217 RYLPA 221
LP
Sbjct: 291 NALPL 295
|
Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 57/206 (27%), Positives = 75/206 (36%), Gaps = 27/206 (13%)
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNR 211
+ L LR ++L K K L NL+ L + C L ELP L L L
Sbjct: 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689
Query: 212 GTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERK--- 268
E+L LP GI L SL R+ G +R + I L EE
Sbjct: 690 RCENLEILPTGIN-LKSLYRLNL----SGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744
Query: 269 -----------RKKDEEVLEALQP--------PPNLKHLGIHQYRGNNVHPHWMMSLTDL 309
K E++ E +QP P+L L + P + +L L
Sbjct: 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804
Query: 310 RILTLSHCINCEHLPPLGKLPSLEQL 335
L + +CIN E LP L SLE L
Sbjct: 805 EHLEIENCINLETLPTGINLESLESL 830
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 67 PFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELT 126
P+I Q + S +L P I F + LR L + +N T +P+ +
Sbjct: 93 PYI----QTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNN-----FTGSIPRGS--IP 140
Query: 127 CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS-RLKIEKLPETLCELYNLQLLN 185
L LD S N EIP +I L+ L+L + + K+P +L L +L+ L
Sbjct: 141 NLETLDL------SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194
Query: 186 VESCQDLKELPQGFGKLINL--MYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVGRGVA 242
+ S Q + ++P+ G++ +L +YL G +L +P I LTSL ++
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYL---GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251
Query: 243 RSSELENKKNLIDLLLY 259
S L N KNL L LY
Sbjct: 252 IPSSLGNLKNLQYLFLY 268
|
Length = 968 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.97 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.93 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.78 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.75 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.72 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.67 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.62 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.58 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.58 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.54 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.53 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.49 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.49 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.46 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.46 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.06 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.03 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.02 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.01 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.0 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.99 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.94 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.93 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.91 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.91 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.9 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.89 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.87 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.83 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.69 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.59 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.56 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.54 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.33 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.26 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.22 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.21 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.1 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.08 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.05 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.01 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.95 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.94 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.91 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.84 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.82 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.81 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.69 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.59 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.34 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.32 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.12 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.58 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.52 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.92 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.78 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.23 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.7 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.5 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.24 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.52 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.55 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 91.4 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.34 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.34 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 82.58 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=269.39 Aligned_cols=389 Identities=20% Similarity=0.206 Sum_probs=195.4
Q ss_pred HHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhccCce-------EEEeeCCCCC-ccccccCCceeEEEEEcCC
Q 044264 14 CFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNEC-------FTVEIDGREE-PFIDSLGQNVRHSMVKLGK 85 (439)
Q Consensus 14 ~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~ 85 (439)
-++.|++++|++... ..++|||+++++|+++++++. +..+...... ........+++.+.+....
T Consensus 471 ~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred ChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 377899999997642 247999999999999988653 1111100000 0001113456666655444
Q ss_pred CCCc---CcccCCCCCeeEEEecCCCCCh-hhHhhhhhHhhhcC-CceeEEeCCccccccccccccccccccccccccce
Q 044264 86 GAPF---PISFCSVKRLRSLLIDDNGDDE-FWLTEVLPQLFDEL-TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRY 160 (439)
Q Consensus 86 ~~~~---~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (439)
..++ +..|.+|++|+.|.+..+..+. ......+|..+..+ +.||.|++.+ +. ...+|..+ .+.+|+.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~------~~-l~~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK------YP-LRCMPSNF-RPENLVK 615 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC------CC-CCCCCCcC-CccCCcE
Confidence 4322 3456677777777775542100 00112233334443 2366666655 44 44444443 3445555
Q ss_pred eecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccc
Q 044264 161 LNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRG 240 (439)
Q Consensus 161 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (439)
|++.++.+..+|..+..+++|+.|+++++..+..+|. ++.+++|+.|++.+|..+..+|..+..+++|+.|++.+|...
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 5555555555555555555555555555444444443 444555555555555544555555555555555555554433
Q ss_pred cccccccccccCcceeeecccCCcchhcc------------CChHHHHHhCCCCCCccEEEEeeccCCcc-------CCc
Q 044264 241 VARSSELENKKNLIDLLLYFGHGNEERKR------------KKDEEVLEALQPPPNLKHLGIHQYRGNNV-------HPH 301 (439)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------l~~ 301 (439)
..++..+ .+++|+.|.++++........ .....++..+ .+++|++|.+.++..... .+.
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchh
Confidence 3333332 344444444444321000000 0111111111 122333333322111000 000
Q ss_pred hhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCC
Q 044264 302 WMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYV 380 (439)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 380 (439)
....+++|+.|++++|.....+|. ++++++|+.|++++|..++.+|.. ..+++|+.|++++|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---------------~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---------------INLESLESLDLSGCSR 837 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---------------CCccccCEEECCCCCc
Confidence 011234555555555555555554 555556666666655555555432 1244455555555444
Q ss_pred ccccccC----------------CCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCcchhh
Q 044264 381 LKEWDYG----------------DTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 381 l~~~~~~----------------~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
+..++.. .+.....+++|+.|++.+|+.++.+|..+..+++|+.+++++|++|+.
T Consensus 838 L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 838 LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 3332210 011224678899999999999999988888899999999999988763
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=260.95 Aligned_cols=286 Identities=20% Similarity=0.233 Sum_probs=216.6
Q ss_pred cCCceeEEEEEcCCCC-CcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGA-PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
...+++++.+.++... .+|. ..+++|++|++++|. +....|..+..+++|++|++++ |.+...+|.
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~-----~~~~~p~~~~~l~~L~~L~L~~------n~l~~~~p~ 182 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM-----LSGEIPNDIGSFSSLKVLDLGG------NVLVGKIPN 182 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc-----ccccCChHHhcCCCCCEEECcc------CcccccCCh
Confidence 3577888888777663 3443 457889999999987 5667788888999999999998 776667888
Q ss_pred ccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccc
Q 044264 151 NIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL 229 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (439)
.+.++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 8889999999999998855 678888899999999999888666788888999999999999888777788888889999
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCc
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDL 309 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L 309 (439)
+.|++..|...+..+..+..+++|+.|++++|. ....++..+..+++|+.|++++|.....+|..+..+++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS--------LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCe--------eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 999998888777778888888889999888774 223455667778888888888887776557777888888
Q ss_pred cEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccc----------cCCCCCCCCCCcCCCCcceeeccCC
Q 044264 310 RILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGV----------ESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 310 ~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
+.|++++|.....+|. ++.+++|+.|++++|.....++..+... +...+..+..+..+++|+.|++.+|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 8888888877766665 7777888888888877544444332211 1111122333455666666666655
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-28 Score=259.36 Aligned_cols=334 Identities=20% Similarity=0.245 Sum_probs=252.4
Q ss_pred cCCceeEEEEEcCCCC-CcCcccC-CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGA-PFPISFC-SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (439)
..+.++.+.+.++... .+|..+. .+++|++|++++|. +.+..|. ..+++|++|++++ |.+...+|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-----l~~~~p~--~~l~~L~~L~Ls~------n~~~~~~p 157 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-----FTGSIPR--GSIPNLETLDLSN------NMLSGEIP 157 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-----cccccCc--cccCCCCEEECcC------CcccccCC
Confidence 3578899999888764 6777655 89999999999987 5555553 5689999999999 77666788
Q ss_pred cccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcc
Q 044264 150 KNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 150 ~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 88999999999999999964 88999999999999999999977788999999999999999999987789999999999
Q ss_pred cccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
|++|++..|...+..+..++.+++|+.|+++.+. ....++..+..+++|++|++++|.....+|.++..+++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK--------LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCe--------eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 9999999999888889999999999999999884 22345667778999999999999887766888999999
Q ss_pred ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccC----------CCCCCCCCCcCCCCcceeeccC
Q 044264 309 LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVES----------DHGRASSSVVAFPKLKTIQFWD 377 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~l~~L~~L~l~~ 377 (439)
|+.|++++|......|. ++.+++|+.|++++|.....++..+..... ..+..+..+..+++|+.|++++
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 99999999998877775 889999999999999865555543211110 0111222233444555555544
Q ss_pred CCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 378 MYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
+.-...++ .....+++|+.|++++|.....+|..+..+++|+.|++++|
T Consensus 390 n~l~~~~p----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 390 NSLEGEIP----KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CEecccCC----HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 32111111 11134556666666666433344444444444444444443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-27 Score=238.89 Aligned_cols=394 Identities=24% Similarity=0.312 Sum_probs=262.2
Q ss_pred CCCcchHHHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhcc-----CceEEEeeC-CCCCccccccCCc
Q 044264 2 RPNKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSK-----NECFTVEID-GREEPFIDSLGQN 75 (439)
Q Consensus 2 ~~~~~~~~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~ 75 (439)
++++++++.|.+|+.+||+++|++..... ++...|+|||++|++|.++|+ ++....... +.....-...+..
T Consensus 447 ~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~ 524 (889)
T KOG4658|consen 447 DGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNS 524 (889)
T ss_pred ccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhh
Confidence 46889999999999999999999987755 677889999999999999999 565444332 1111222334688
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
+|++++.+.....++.. ..++.|++|-+.++. ..+....+.+|..++.|++|||++ |.-...+|..++.+
T Consensus 525 ~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~---~~l~~is~~ff~~m~~LrVLDLs~------~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNS---DWLLEISGEFFRSLPLLRVLDLSG------NSSLSKLPSSIGEL 594 (889)
T ss_pred eeEEEEeccchhhccCC-CCCCccceEEEeecc---hhhhhcCHHHHhhCcceEEEECCC------CCccCcCChHHhhh
Confidence 99999999999888776 356789999999985 124556667799999999999998 76678899999999
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC---cccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP---AGIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L 232 (439)
-+||+|+++++.++.+|..++++..|.+|++..+.....+|.....|.+|++|.+.... ..... ..+.++.+|+.+
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhh
Confidence 99999999999999999999999999999999998777777777779999999987654 11111 223444445544
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh-----c-c
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-----S-L 306 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-----~-~ 306 (439)
....... .....+..++.|..+...-..... ........+..+.+|+.|.+.++........+.. . +
T Consensus 674 s~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~-----~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f 746 (889)
T KOG4658|consen 674 SITISSV--LLLEDLLGMTRLRSLLQSLSIEGC-----SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCF 746 (889)
T ss_pred eeecchh--HhHhhhhhhHHHHHHhHhhhhccc-----ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhH
Confidence 4432221 222233444444433222110000 2234455677788889999888877642122211 2 5
Q ss_pred cCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCccee-eccCCCCccccc
Q 044264 307 TDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTI-QFWDMYVLKEWD 385 (439)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~~~~ 385 (439)
+++..+.+.+|.....+.+....|+|+.|.+.+|..++.+.+.......... ....|+++..+ .+.+.+.++.+.
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~----~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE----LILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc----EEecccccccceeeecCCCCceeE
Confidence 5677777777766666655556688888888888876665443221110000 12234444444 344444444433
Q ss_pred cCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
... -.+|.|+++.+..||.+..+| .+.++.|.+|
T Consensus 823 ~~~----l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 823 WLP----LSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred ecc----cCccchhheehhcCcccccCc-------cccccceecc
Confidence 222 235567777777776655544 4444555554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-28 Score=225.45 Aligned_cols=333 Identities=21% Similarity=0.226 Sum_probs=260.0
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-ccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 151 (439)
.+.++.+.+.......+|..+..+.+|++|.+.+|. +.... ..++.++.||.+.+.+ |++ ...+|+.
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-----L~~vh-GELs~Lp~LRsv~~R~------N~LKnsGiP~d 98 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-----LISVH-GELSDLPRLRSVIVRD------NNLKNSGIPTD 98 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-----hHhhh-hhhccchhhHHHhhhc------cccccCCCCch
Confidence 466888888888889999999999999999999886 34333 3378889999999988 553 2347888
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
+.++..|.+|||++|+++++|..+..-+++-.|++++|+ +..+|.. +-+|..|-.|++++|+ +..+|..+.++.+|+
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhh
Confidence 889999999999999999999999999999999999988 8888875 5688999999999887 688888899999999
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
+|.+++|.....-...+..+++|+.|.+++... ....+|..+..+.||..++++.|..... |..+-.+++|+
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~Lr 248 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-------TLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLR 248 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccc-------hhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhh
Confidence 999999888777777788888888888887632 3466778888888999999999888877 88888899999
Q ss_pred EEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccc----------cCCC-CCCCCCCcCCCCcceeeccCCC
Q 044264 311 ILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGV----------ESDH-GRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~-~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.|++++|.+++.-...+...+|+.|+++.|. +..+|...... +..+ .++|++++.+-+|+.+...++
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN- 326 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-
Confidence 9999998876655556777888888888887 66666542111 1111 124555666666666666553
Q ss_pred CccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCcchh
Q 044264 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQ 434 (439)
Q Consensus 380 ~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~l~ 434 (439)
.|+-++.+ ..-+++|++|.+..+ .+.++|+.|.-++-|+.||+..+|++.
T Consensus 327 ~LElVPEg----lcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 327 KLELVPEG----LCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccCchh----hhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc
Confidence 23333322 145789999999887 788899999999999999999998863
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-25 Score=205.74 Aligned_cols=319 Identities=19% Similarity=0.195 Sum_probs=175.1
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-cc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NI 152 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~ 152 (439)
.+++.+.+..+....+|.-.....+++.|++.+|. +...-.+.+..++.||+|||+. |. +..+|. .+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-----I~sv~se~L~~l~alrslDLSr------N~-is~i~~~sf 169 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-----ISSVTSEELSALPALRSLDLSR------NL-ISEIPKPSF 169 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccc-----cccccHHHHHhHhhhhhhhhhh------ch-hhcccCCCC
Confidence 34444444444444444433334445555555554 4444444555556666666665 44 333332 23
Q ss_pred ccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccC-CcccccCccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYL-PAGIERLTSL 229 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L 229 (439)
..-.++++|+|++|.|+.+- ..+..+.+|..|.++.|+ ++.+|. .|++|++|+.|++..|.. +.. ...|..+++|
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl 247 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhh
Confidence 33455666666666666553 245555566666666665 555554 445566666666666653 221 2234556666
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHH-HHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEV-LEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+.|.+..|.+..-....|..+.+++.|++..|. ...+ ..++..+..|+.|++++|.+..+-+.....+++
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~---------l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR---------LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccch---------hhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 666666555544444445555566666665552 1111 234455666666666666666554444556666
Q ss_pred ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccC
Q 044264 309 LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYG 387 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 387 (439)
|++|+|+.|.+..--+. +..+..|+.|++++|. +..+-+ ..+..+.+|++|++..+. +.....+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e-------------~af~~lssL~~LdLr~N~-ls~~IED 383 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE-------------GAFVGLSSLHKLDLRSNE-LSWCIED 383 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh-------------hHHHHhhhhhhhcCcCCe-EEEEEec
Confidence 77777766655433332 5556666666666665 333222 125567777788777643 2211111
Q ss_pred CCcccccCcccceeeecccccccCCCC-CCCCCCCccEEEEcCCc
Q 044264 388 DTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 388 ~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~~c~ 431 (439)
.......+|+|++|.+.|+ +++.||. .+.++++|+.||+.++.
T Consensus 384 aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 2222235788888888887 7777765 35668888888887774
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=221.48 Aligned_cols=337 Identities=21% Similarity=0.229 Sum_probs=217.9
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
+.++|.+.+.+.....+|..+ ...+|+.|++.++. ...++..+..+++|+.|++++ +.....+|. +
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~------l~~L~~~~~~l~~Lk~L~Ls~------~~~l~~ip~-l 653 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK------LEKLWDGVHSLTGLRNIDLRG------SKNLKEIPD-L 653 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc------ccccccccccCCCCCEEECCC------CCCcCcCCc-c
Confidence 445666666666666666665 45677777777665 334455566677777777776 443455553 5
Q ss_pred ccccccceeecCCCC-CccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLK-IEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+++|++|++++|. +..+|..++++++|+.|++++|..+..+|..+ ++++|+.|++++|..+..+|.. ..+|+.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 667777777777765 66777777777777777777776666676654 6677777777777655555532 346666
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|++..+... .++..+ .+++|+.|.+..+....... ......+.....+++|+.|++++|.....+|..+..+++|+.
T Consensus 730 L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 730 LDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE-RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eecCCCccc-cccccc-cccccccccccccchhhccc-cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 666665532 233332 45677777765532111000 000000111223578999999998776655888999999999
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCcccccc------CCCCCCCCCCcCCCCcceeeccCCCCccccc
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVE------SDHGRASSSVVAFPKLKTIQFWDMYVLKEWD 385 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (439)
|++++|...+.+|....+++|+.|++++|..+..++....... ......|.++..+++|+.|++++|.+++.++
T Consensus 807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 807 LEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred EECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 9999998888888755789999999999987776553211100 0111244457789999999999999999877
Q ss_pred cCCCcccccCcccceeeecccccccCCCCCC-------------CCCCCccEEEEcCCcchh
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPDHL-------------LQTTTLQKLEIWGCPNLQ 434 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l-------------~~~~~L~~L~i~~c~~l~ 434 (439)
... ..+++|+.+++.+|+.+..++..- ..++....+...+|.++.
T Consensus 887 ~~~----~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 887 LNI----SKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccc----ccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 543 568999999999999887653210 123344555667776654
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-24 Score=197.72 Aligned_cols=320 Identities=18% Similarity=0.155 Sum_probs=252.0
Q ss_pred cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
....+..+.+..+.+..+. ..+..++.||+|+++.|. +...--..|..-.++++|+|++ |.+...-..
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-----is~i~~~sfp~~~ni~~L~La~------N~It~l~~~ 191 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-----ISEIPKPSFPAKVNIKKLNLAS------NRITTLETG 191 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-----hhcccCCCCCCCCCceEEeecc------ccccccccc
Confidence 3577899999999887774 456678999999999987 5555445577778899999999 884444456
Q ss_pred ccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccccc-chhhhhccccceeeccCccccccCCcccccCcc
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
.|..+.+|.+|.|+.|.++.+|. .+.++++|+.|++..|. +... -..|..|++|+.|.+..|....--...|..|.+
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 78888999999999999999996 56679999999999998 5544 345889999999999998854433445788999
Q ss_pred cccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+++|++..|........++-+++.|+.|++++|... ..-++.+.-+++|++|+|++|.+..+.+..+..+..
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~--------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ--------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ 342 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhh--------eeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence 999999999988888888999999999999998421 222566778899999999999999986778889999
Q ss_pred ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccC
Q 044264 309 LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYG 387 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 387 (439)
|+.|.|++|........ +..+.+|+.|+++.|..--.+.+.- ..+.++|+|++|++.++ +++.++-.
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa-----------~~f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA-----------VAFNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-----------hhhccchhhhheeecCc-eeeecchh
Confidence 99999999976543333 7788999999999998443333311 22667999999999885 56766533
Q ss_pred CCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEc
Q 044264 388 DTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIW 428 (439)
Q Consensus 388 ~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~ 428 (439)
. -..+++|++|++.++ .+.+| |..+..+ .|++|.+.
T Consensus 411 A---fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 411 A---FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred h---hccCcccceecCCCC-cceeecccccccc-hhhhhhhc
Confidence 2 256899999999998 56666 5556666 88887664
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-24 Score=199.62 Aligned_cols=297 Identities=22% Similarity=0.222 Sum_probs=182.6
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc-cccccccceeecCC
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-IEKLVHLRYLNLSR 165 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~ 165 (439)
..+|..++++..|+.|++++|. ....|..+.+-+++-+|+|++ |+ +..+|.. +-++..|-+|||++
T Consensus 93 sGiP~diF~l~dLt~lDLShNq------L~EvP~~LE~AKn~iVLNLS~------N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQ------LREVPTNLEYAKNSIVLNLSY------NN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred CCCCchhcccccceeeecchhh------hhhcchhhhhhcCcEEEEccc------Cc-cccCCchHHHhhHhHhhhcccc
Confidence 4455555666666666666654 334455555556666666665 54 4445443 33555566666666
Q ss_pred CCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc-cccCCcccccCcccccccceeeccccccc
Q 044264 166 LKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES-LRYLPAGIERLTSLRRVEKFVVGRGVARS 244 (439)
Q Consensus 166 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 244 (439)
|.+..+|+.+..+.+|++|++++|...-.--..+..|++|++|.+++++. ...+|..+..+.+|..++++.|.. ..+|
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vP 238 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVP 238 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-Ccch
Confidence 66666666666666666666666552110000122344555555555432 344666666777777777765543 3566
Q ss_pred cccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCC-CcC
Q 044264 245 SELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINC-EHL 323 (439)
Q Consensus 245 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~ 323 (439)
..+..+++|+.|.+++|. +.++.-..+...+|++|+++.|+.... |..+..+++|+.|++.+|... +.+
T Consensus 239 ecly~l~~LrrLNLS~N~---------iteL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNK---------ITELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred HHHhhhhhhheeccCcCc---------eeeeeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCC
Confidence 677777777777777773 222223333456777777777777776 777778888888888777653 456
Q ss_pred CC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceee
Q 044264 324 PP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLC 402 (439)
Q Consensus 324 ~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~ 402 (439)
|+ ++.+.+|+.+..++|. ++-+|. ++..|++|++|.+..+ .|..++. .+..+|.|+.|+
T Consensus 309 PSGIGKL~~Levf~aanN~-LElVPE--------------glcRC~kL~kL~L~~N-rLiTLPe----aIHlL~~l~vLD 368 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNK-LELVPE--------------GLCRCVKLQKLKLDHN-RLITLPE----AIHLLPDLKVLD 368 (1255)
T ss_pred ccchhhhhhhHHHHhhccc-cccCch--------------hhhhhHHHHHhccccc-ceeechh----hhhhcCCcceee
Confidence 65 7888888888877766 665554 3677899999999654 4444442 235689999999
Q ss_pred ecccccccCCCCCCCCCCCccEEEE
Q 044264 403 IARCPTLRALPDHLLQTTTLQKLEI 427 (439)
Q Consensus 403 i~~c~~l~~l~~~l~~~~~L~~L~i 427 (439)
+..+|++.--|..-..-.+|+.-+|
T Consensus 369 lreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 369 LRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ccCCcCccCCCCcchhhhcceeeec
Confidence 9999988776654433345554444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-24 Score=188.85 Aligned_cols=240 Identities=25% Similarity=0.242 Sum_probs=196.7
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
..+..+.++.+...+.|+++++...+..++.++|. ...+|+.+.....|+.|+.++ +. ...+|+.++
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~lp~~i~s~~~l~~l~~s~------n~-~~el~~~i~ 134 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSELPEQIGSLISLVKLDCSS------NE-LKELPDSIG 134 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------HhhccHHHhhhhhhhhhhccc------cc-eeecCchHH
Confidence 34566777788888888888888888899888886 556777788889999999988 77 677888899
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+..|..|+..+|.+..+|++++++.+|..|++.++. ...+|+..-.++.|++|+...|- ++.+|..++.+.+|..|+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHH
Confidence 9999999999999999999999999999999999988 77777766669999999987775 688999999999999999
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhC-CCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL-QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+..|... .+| +|.+|..|.+|+++.| .++.++... ..+++|..|++.+|..... |..+.-+.+|.+|
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N---------~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rL 280 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGEN---------QIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERL 280 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhccc---------HHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhh
Confidence 9888764 333 7889999999998887 455555444 4788888888888888887 8888888888888
Q ss_pred eecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|+++|.+..-.+.++++ .|+.|-+.||+
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCc
Confidence 88888776555568887 78888887775
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-21 Score=174.03 Aligned_cols=268 Identities=25% Similarity=0.281 Sum_probs=198.2
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
++.-..|..|.+++ |. ...+.+.+.++..|.+|++.+|.+..+|++++.+..++.|+++.+. ..++|..++.
T Consensus 41 wW~qv~l~~lils~------N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s 112 (565)
T KOG0472|consen 41 WWEQVDLQKLILSH------ND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGS 112 (565)
T ss_pred hhhhcchhhhhhcc------Cc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhh
Confidence 33445566777776 55 4444455667777777777777777777777777777777777776 6677777777
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCC
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 281 (439)
+.+|+.++++.+. ...+|..++.+-.|..++...|... ..+..+..+.+|..+.+.++ ...+.+.....
T Consensus 113 ~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n---------~l~~l~~~~i~ 181 (565)
T KOG0472|consen 113 LISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN---------KLKALPENHIA 181 (565)
T ss_pred hhhhhhhhccccc-eeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc---------chhhCCHHHHH
Confidence 7777777777766 4556666777777777776655543 55666677777777777766 34455555555
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCC
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRAS 361 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 361 (439)
++.|++|+...|..... |..++.+.+|..|++..|... .+|.|++|..|++|.++.|. ++.++.+.
T Consensus 182 m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~-i~~lpae~----------- 247 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQ-IEMLPAEH----------- 247 (565)
T ss_pred HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccH-HHhhHHHH-----------
Confidence 78888888888888777 888999999999999988654 57788899999999998776 66666543
Q ss_pred CCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 362 SSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 362 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
...++.|..|++.++ ++++++.+. ..+.+|++|+++++ .+..+|..++++ +|+.|-+.|+|
T Consensus 248 --~~~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 248 --LKHLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred --hcccccceeeecccc-ccccCchHH----HHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 346889999999885 577776543 45788999999998 789999999999 99999999987
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-20 Score=180.34 Aligned_cols=194 Identities=22% Similarity=0.152 Sum_probs=101.3
Q ss_pred ccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccC-
Q 044264 192 LKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK- 270 (439)
Q Consensus 192 ~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 270 (439)
...+|++++.+.+|+.+.+..|.. ..+|..+....+|+.|.+..|... .++..+.+.++|+.|++..|.....-+..
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHH
Confidence 335666677777777777766663 555666666666666665555432 34444555556666666555321100000
Q ss_pred ----------------------------------------ChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 271 ----------------------------------------KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 271 ----------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
..+.....+..+++|+.|+|++|+...+....+..+..|+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 2233333444555666666666655555223344555566
Q ss_pred EEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc
Q 044264 311 ILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 390 (439)
.|+++||........+..++.|+.|...+|. +..+|. +..+|.|+.++++. .+|+.+.....
T Consensus 411 eL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe---------------~~~l~qL~~lDlS~-N~L~~~~l~~~- 472 (1081)
T KOG0618|consen 411 ELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPE---------------LAQLPQLKVLDLSC-NNLSEVTLPEA- 472 (1081)
T ss_pred HHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechh---------------hhhcCcceEEeccc-chhhhhhhhhh-
Confidence 6666665443222225555556665555554 444442 44566677777753 34444433221
Q ss_pred ccccC-cccceeeeccccc
Q 044264 391 KGEIM-PRLSSLCIARCPT 408 (439)
Q Consensus 391 ~~~~~-p~L~~L~i~~c~~ 408 (439)
.. |+|+.|+++|++.
T Consensus 473 ---~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 ---LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ---CCCcccceeeccCCcc
Confidence 12 5677777777654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-19 Score=175.64 Aligned_cols=322 Identities=20% Similarity=0.162 Sum_probs=180.2
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
++++.+.+.....+|..+..+.+|+.|.++.|. ....|.....+++|++|+|.+ +. ...+|..+..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~------i~~vp~s~~~~~~l~~lnL~~------n~-l~~lP~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY------IRSVPSSCSNMRNLQYLNLKN------NR-LQSLPASISEL 113 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh------HhhCchhhhhhhcchhheecc------ch-hhcCchhHHhh
Confidence 777888888888888888888888888888875 445566778888888888887 55 67788888888
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-------------------hhhhccccceeeccCcccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-------------------GFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-------------------~i~~l~~L~~L~l~~~~~~ 216 (439)
++|++|++++|.+..+|..+..+..++.+..++|..+..++. ++..+.+ .|++..|...
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 888888888888888888887777777777777632322221 1112222 2444444332
Q ss_pred ccCCcccccCcccccccceeeccccc------------------cccccccccCcceeeecccCCcchhccCChHHHHHh
Q 044264 217 RYLPAGIERLTSLRRVEKFVVGRGVA------------------RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEA 278 (439)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 278 (439)
. ..+..+.+|+.+....+..... ....-..-.+|+.++++++ ....++.+
T Consensus 192 -~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n---------~l~~lp~w 259 (1081)
T KOG0618|consen 192 -V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN---------NLSNLPEW 259 (1081)
T ss_pred -h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh---------hhhcchHH
Confidence 0 1222333333333332221110 0000001123444444444 23334444
Q ss_pred CCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccC---
Q 044264 279 LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVES--- 355 (439)
Q Consensus 279 l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--- 355 (439)
+..+.+|+.+...+|.+... |..+....+|+.|.+..|...-..+...++.+|+.|++..|. +..+|+.++....
T Consensus 260 i~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHH
Confidence 44455555555554444333 444444444444444444332222335568888888888877 6556553332211
Q ss_pred ---------CCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC-CCCCCCCccEE
Q 044264 356 ---------DHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKL 425 (439)
Q Consensus 356 ---------~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L 425 (439)
.......+-..++.|+.|++.++. ++ .........++.|+.|+++++ .+.++|. .+.+++.|++|
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Lt---d~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LT---DSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCc-cc---ccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHH
Confidence 000011112234556666666641 22 222223346777777777777 6666664 35567777777
Q ss_pred EEcCCc
Q 044264 426 EIWGCP 431 (439)
Q Consensus 426 ~i~~c~ 431 (439)
+++|++
T Consensus 413 ~LSGNk 418 (1081)
T KOG0618|consen 413 NLSGNK 418 (1081)
T ss_pred hcccch
Confidence 777763
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-16 Score=157.34 Aligned_cols=255 Identities=22% Similarity=0.224 Sum_probs=169.1
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE 177 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~ 177 (439)
.-..|+++.+. +. .+|..+. ++|+.|++.+ |. +..+|.. +++|++|++++|.++.+|..
T Consensus 202 ~~~~LdLs~~~-----Lt-sLP~~l~--~~L~~L~L~~------N~-Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--- 260 (788)
T PRK15387 202 GNAVLNVGESG-----LT-TLPDCLP--AHITTLVIPD------NN-LTSLPAL---PPELRTLEVSGNQLTSLPVL--- 260 (788)
T ss_pred CCcEEEcCCCC-----CC-cCCcchh--cCCCEEEccC------Cc-CCCCCCC---CCCCcEEEecCCccCcccCc---
Confidence 35567777765 23 4554443 4678888877 66 4556542 46788888888888877753
Q ss_pred ccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceee
Q 044264 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL 257 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 257 (439)
.++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.... ++.. ..+|+.|.
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLW 328 (788)
T ss_pred ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcccc-CCCC---cccccccc
Confidence 3577788888776 5666652 2467778887776 4556542 4678888887776543 2221 23567777
Q ss_pred ecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeee
Q 044264 258 LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYF 337 (439)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 337 (439)
+++|. ...++. .+.+|+.|++++|.+..+ |.. .++|+.|++++|.+. .+|.. ..+|+.|++
T Consensus 329 Ls~N~---------L~~LP~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l--~~~L~~LdL 389 (788)
T PRK15387 329 AYNNQ---------LTSLPT---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL--PSGLKELIV 389 (788)
T ss_pred cccCc---------cccccc---cccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc--ccccceEEe
Confidence 77663 222221 224788888888888775 542 357888888887655 35542 357888888
Q ss_pred ccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCC
Q 044264 338 YSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLL 417 (439)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~ 417 (439)
++|. +..+|. ..++|+.|+++++. ++.++ ..+.+|+.|++++| .++.+|..+.
T Consensus 390 s~N~-Lt~LP~-----------------l~s~L~~LdLS~N~-LssIP-------~l~~~L~~L~Ls~N-qLt~LP~sl~ 442 (788)
T PRK15387 390 SGNR-LTSLPV-----------------LPSELKELMVSGNR-LTSLP-------MLPSGLLSLSVYRN-QLTRLPESLI 442 (788)
T ss_pred cCCc-ccCCCC-----------------cccCCCEEEccCCc-CCCCC-------cchhhhhhhhhccC-cccccChHHh
Confidence 8886 444443 13578889998863 55444 12457888999887 6788888888
Q ss_pred CCCCccEEEEcCCc
Q 044264 418 QTTTLQKLEIWGCP 431 (439)
Q Consensus 418 ~~~~L~~L~i~~c~ 431 (439)
.+++|+.|++++|+
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 89999999999885
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-16 Score=155.36 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=154.0
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
.+...|++++ .. ...+|..+ .+.|+.|++++|.++.+|..+. .+|++|++++|. +..+|..+. .+|
T Consensus 178 ~~~~~L~L~~------~~-LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L 243 (754)
T PRK15370 178 NNKTELRLKI------LG-LTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTI 243 (754)
T ss_pred cCceEEEeCC------CC-cCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccc
Confidence 3466777776 54 44555543 2467777777777777776554 477777777776 666766443 367
Q ss_pred ceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCc
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNL 285 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 285 (439)
+.|++++|. +..+|..+. .+|+.|+++.|... .++..+. ++|+.|++++|.. ..++..+ .++|
T Consensus 244 ~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L---------t~LP~~l--p~sL 306 (754)
T PRK15370 244 QEMELSINR-ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI---------RTLPAHL--PSGI 306 (754)
T ss_pred cEEECcCCc-cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc---------ccCcccc--hhhH
Confidence 777777776 346665543 46777777766554 3444343 4678888877631 2222211 2467
Q ss_pred cEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCC
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSV 364 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (439)
+.|++++|....+ |..+ .++|+.|++++|.+.. +|. + .++|+.|++++|. +..+|.. +
T Consensus 307 ~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~-L~~LP~~--------------l 365 (754)
T PRK15370 307 THLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQ-ITVLPET--------------L 365 (754)
T ss_pred HHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCC-CCcCChh--------------h
Confidence 7888888777664 5443 3678888888876543 443 3 2688888888876 4444432 1
Q ss_pred cCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCC----CCCCccEEEEcCCcc
Q 044264 365 VAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLL----QTTTLQKLEIWGCPN 432 (439)
Q Consensus 365 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~----~~~~L~~L~i~~c~~ 432 (439)
.+.|+.|++++| .++.++. ...++|+.|++++| .+..+|..+. .++++..|++.+++-
T Consensus 366 --p~~L~~LdLs~N-~Lt~LP~------~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 366 --PPTITTLDVSRN-ALTNLPE------NLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --cCCcCEEECCCC-cCCCCCH------hHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 357888888876 3444432 12346888888887 6667765443 347788888888763
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=151.12 Aligned_cols=248 Identities=20% Similarity=0.232 Sum_probs=157.2
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
.+...+.+.......+|..+. +.++.|++.+|. +. .+|..+ ..+|+.|++++ |. +..+|..+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-----Lt-sLP~~l--~~nL~~L~Ls~------N~-LtsLP~~l~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-----LK-SLPENL--QGNIKTLYANS------NQ-LTSIPATLP 240 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-----CC-cCChhh--ccCCCEEECCC------Cc-cccCChhhh
Confidence 445566776667777776553 468888888876 33 344433 25788888887 66 445665442
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+|+.|++++|.+..+|..+. .+|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|+
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLN 310 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHH
Confidence 468888888888888887664 478888888776 666776543 478888888876 455665442 4677888
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEe
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILT 313 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 313 (439)
+++|.... ++..+ .++|+.|.+++|.. ..++..+ +++|+.|++++|.+..+ |..+ .++|+.|+
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L---------t~LP~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~Ld 373 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENAL---------TSLPASL--PPELQVLDVSKNQITVL-PETL--PPTITTLD 373 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcc---------ccCChhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEE
Confidence 87776543 33222 25778888777631 2223222 25788888888877654 5544 25788888
Q ss_pred ecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 314 LSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 314 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
+++|.+. .+|. +. ++|+.|++++|. +..+|..+... ...+|.+..|.+.+++
T Consensus 374 Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~----------~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 374 VSRNALT-NLPENLP--AALQIMQASRNN-LVRLPESLPHF----------RGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCcCC-CCCHhHH--HHHHHHhhccCC-cccCchhHHHH----------hhcCCCccEEEeeCCC
Confidence 8887655 3443 22 367788887776 44555432111 2335667777776654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-17 Score=128.25 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=87.7
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+.++..|.+++|+++.+|+.|..+.+|+.|++++|. ++++|..+.++++|++|+++-|+ +..+|.+++.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 3444455555555555555555555555555555555 55555555555555555555444 344555555555555555
Q ss_pred ceeeccc-cccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 234 KFVVGRG-VARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 234 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+..|... ..++..+-.++.|+-|+++.| ..+.++..++.+.+|+.|.+..|..... |..++.+..|+.|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn---------dfe~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrel 178 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN---------DFEILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLREL 178 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC---------CcccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHH
Confidence 5554433 234444555555555555555 3344455566666666666666666665 6666667777777
Q ss_pred eecCCCCCC
Q 044264 313 TLSHCINCE 321 (439)
Q Consensus 313 ~l~~~~~~~ 321 (439)
.+.+|....
T Consensus 179 hiqgnrl~v 187 (264)
T KOG0617|consen 179 HIQGNRLTV 187 (264)
T ss_pred hcccceeee
Confidence 777665543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-17 Score=129.17 Aligned_cols=152 Identities=23% Similarity=0.314 Sum_probs=78.5
Q ss_pred CCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
..+++.+.|.+++|+ ....|..+..+.+|++|++.+ +. +..+|..++.++.|+.|++.-|.+..+|.
T Consensus 30 f~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~n------nq-ie~lp~~issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSN------NQ-IEELPTSISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred cchhhhhhhhcccCc------eeecCCcHHHhhhhhhhhccc------ch-hhhcChhhhhchhhhheecchhhhhcCcc
Confidence 455556666666654 223333355555566665555 44 55555555555556666555555555555
Q ss_pred hHhhccCCcEeecCCCCcc-cccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDL-KELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~-~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.++.++.|+.||+++|+.. ..+|..+-.|..|+.|.++.|. ..-+|..++++++|+.|.+.+|... .++.+++.++.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 5555555666655555422 1255555555555555555554 3445555555555555555444332 23333444444
Q ss_pred cceeeecc
Q 044264 253 LIDLLLYF 260 (439)
Q Consensus 253 L~~L~l~~ 260 (439)
|++|++.+
T Consensus 175 lrelhiqg 182 (264)
T KOG0617|consen 175 LRELHIQG 182 (264)
T ss_pred HHHHhccc
Confidence 44444433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-14 Score=139.86 Aligned_cols=174 Identities=22% Similarity=0.184 Sum_probs=76.4
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
+|+.|++++|.++.+|.. +++|+.|++++|. +..+|.. ..+|+.|.+.+|. +..+|.. ..+|+.|++++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---ccccceEecCC
Confidence 344555555555555432 2445555555554 3344331 1234444454444 2333321 13455555555
Q ss_pred eccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 237 VGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|.... ++.. .++|+.|++++|. ...++. .+.+|+.|++++|.+... |.. .++|+.|++++
T Consensus 352 N~Ls~-LP~l---p~~L~~L~Ls~N~---------L~~LP~---l~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~ 411 (788)
T PRK15387 352 NQLAS-LPTL---PSELYKLWAYNNR---------LTSLPA---LPSGLKELIVSGNRLTSL-PVL---PSELKELMVSG 411 (788)
T ss_pred CccCC-CCCC---Ccccceehhhccc---------cccCcc---cccccceEEecCCcccCC-CCc---ccCCCEEEccC
Confidence 44332 1111 1244444444442 111111 123455556655555543 322 24555566665
Q ss_pred CCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 317 CINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|.+. .+|.. +.+|+.|++++|. ++.+|.. +..+++|+.|++++++
T Consensus 412 N~Ls-sIP~l--~~~L~~L~Ls~Nq-Lt~LP~s--------------l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NRLT-SLPML--PSGLLSLSVYRNQ-LTRLPES--------------LIHLSSETTVNLEGNP 456 (788)
T ss_pred CcCC-CCCcc--hhhhhhhhhccCc-ccccChH--------------HhhccCCCeEECCCCC
Confidence 5443 23321 2345555555554 3344432 3345666666666653
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-15 Score=150.43 Aligned_cols=308 Identities=24% Similarity=0.259 Sum_probs=204.3
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-cccccc-ccccccccceeecC
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPK-NIEKLVHLRYLNLS 164 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-~~~~l~~L~~L~L~ 164 (439)
...|.. ......|.+.+.++. ...++.. ..++.|++|-+.+ +.. ...++. .|..++.|++|||+
T Consensus 514 ~~~~~~-~~~~~~rr~s~~~~~------~~~~~~~-~~~~~L~tLll~~------n~~~l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 514 SEIPQV-KSWNSVRRMSLMNNK------IEHIAGS-SENPKLRTLLLQR------NSDWLLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred cccccc-cchhheeEEEEeccc------hhhccCC-CCCCccceEEEee------cchhhhhcCHHHHhhCcceEEEECC
Confidence 334433 455778899988876 3333332 3556899998887 541 333433 37789999999999
Q ss_pred CCC-CccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeec--ccc
Q 044264 165 RLK-IEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG--RGV 241 (439)
Q Consensus 165 ~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~ 241 (439)
+|. +..+|..|+.+.+|++|+++++. +..+|.++++|..|.+|++..+.....+|..+..+++|++|.+.... .+.
T Consensus 580 ~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 988 89999999999999999999999 88999999999999999999988766676666779999999987653 333
Q ss_pred ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCcc----EEEEeeccCCccCCchhhcccCccEEeecCC
Q 044264 242 ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLK----HLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317 (439)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 317 (439)
.....+..+++|+.+.+.... . .+...+..+..|. .+.+.++..... +..+..+.+|+.|.+.+|
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s---------~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISS---------V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGNLEELSILDC 727 (889)
T ss_pred hhHHhhhcccchhhheeecch---------h-HhHhhhhhhHHHHHHhHhhhhccccccee-ecccccccCcceEEEEcC
Confidence 455566777777777775542 1 2222223333332 333333333333 566778899999999998
Q ss_pred CCCCcCC----C--CCC-cCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc
Q 044264 318 INCEHLP----P--LGK-LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390 (439)
Q Consensus 318 ~~~~~~~----~--~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 390 (439)
...+... . ... ++++..+.+..|........ ....|+|+.|++..|..++++......
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---------------~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---------------LLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccch---------------hhccCcccEEEEecccccccCCCHHHH
Confidence 8754221 1 222 55677777777765554322 345789999999999877765522110
Q ss_pred ------ccccCccccee-eecccccccCCCCCCCCCCCccEEEEcCCcchhh
Q 044264 391 ------KGEIMPRLSSL-CIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 391 ------~~~~~p~L~~L-~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
....|+++..+ .+.+.+.+..+-..=..++.|+.+.+..||++.+
T Consensus 793 ~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 793 LLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred hhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence 11345555555 3444444443311111244599999999988764
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-15 Score=142.51 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=59.3
Q ss_pred hhhhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCCCCcc-------CChhHhhccCCcEe
Q 044264 116 EVLPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRLKIEK-------LPETLCELYNLQLL 184 (439)
Q Consensus 116 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~~-------lp~~i~~l~~L~~L 184 (439)
......+..+.+|+.|++++ +.+. ..++..+...++|+.|+++++.+.. ++..+.++++|+.|
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEG------NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred cchHHHHHHHhhccEEeecC------CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34445566677788888887 5421 2345556667778888887776542 23455667778888
Q ss_pred ecCCCCcccccchhhhhccc---cceeeccCccc
Q 044264 185 NVESCQDLKELPQGFGKLIN---LMYLLNRGTES 215 (439)
Q Consensus 185 ~l~~~~~~~~l~~~i~~l~~---L~~L~l~~~~~ 215 (439)
++++|......+..+..+.+ |++|++++|..
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 88777744444445555554 77777777654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-14 Score=126.26 Aligned_cols=145 Identities=22% Similarity=0.289 Sum_probs=88.9
Q ss_pred EEEeeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCC
Q 044264 57 FTVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFA 134 (439)
Q Consensus 57 ~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 134 (439)
..+++.+.....++. .+.....+.+..+.+..+|+ +|..+++||.|++++|. +..+-|..|..++.|-.|-+.
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccc-----hhhcChHhhhhhHhhhHHHhh
Confidence 344444545444444 45556666677777777754 56677777777777776 677777777777777666555
Q ss_pred cccccccccccccccc-ccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccch-hhhhccccceeecc
Q 044264 135 MFQMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNR 211 (439)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~ 211 (439)
+ ++-+..+|+ .|..+..|+.|.+.-|++.-++ +.+..+++|..|.+.+|. .+.++. .+..+..++++.+.
T Consensus 124 g------~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 124 G------NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred c------CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 5 333555554 3566777777777777766444 356666777777776665 444444 44555555555444
Q ss_pred Cc
Q 044264 212 GT 213 (439)
Q Consensus 212 ~~ 213 (439)
.+
T Consensus 197 ~n 198 (498)
T KOG4237|consen 197 QN 198 (498)
T ss_pred cC
Confidence 33
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-14 Score=134.50 Aligned_cols=242 Identities=19% Similarity=0.102 Sum_probs=129.8
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-cCCh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPE 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~ 173 (439)
.++.++.+.+.++...... ...++..+...+.|+.|+++++.+..-......++..+..+++|+.|++++|.+. ..+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~-~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEA-AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHH-HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3445666666666511000 1224444556666777777662210000001223344555667777777776654 3334
Q ss_pred hHhhccC---CcEeecCCCCccc----ccchhhhhc-cccceeeccCccccc----cCCcccccCcccccccceeecccc
Q 044264 174 TLCELYN---LQLLNVESCQDLK----ELPQGFGKL-INLMYLLNRGTESLR----YLPAGIERLTSLRRVEKFVVGRGV 241 (439)
Q Consensus 174 ~i~~l~~---L~~L~l~~~~~~~----~l~~~i~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 241 (439)
.+..+.. |++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|++..|...+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4444444 7777777665321 122334455 667777777766431 122334555667777776665543
Q ss_pred c----cccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh-----cccCccEE
Q 044264 242 A----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-----SLTDLRIL 312 (439)
Q Consensus 242 ~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-----~~~~L~~L 312 (439)
. +...+..+++|+.|+++++.... .....+...+..+++|++|++++|.........+. ..+.|++|
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTD----EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccCh----HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 2 22334455677777777664221 02234455666778888888888766541112222 13678888
Q ss_pred eecCCCCCCc----CC-CCCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEH----LP-PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~----~~-~~~~l~~L~~L~l~~~~ 341 (439)
++++|.+... +. .+..+++|+.+++++|.
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 8888766421 11 14455788888888877
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-14 Score=129.75 Aligned_cols=239 Identities=19% Similarity=0.146 Sum_probs=162.1
Q ss_pred EEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccce
Q 044264 81 VKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRY 160 (439)
Q Consensus 81 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (439)
..+.+..++|..+. +....+.+..|. +....+..|+.+++||.|+|++ |.+...-|+.|+.++.|-.
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdqN~-----I~~iP~~aF~~l~~LRrLdLS~------N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQNQ-----ISSIPPGAFKTLHRLRRLDLSK------NNISFIAPDAFKGLASLLS 119 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEeccCC-----cccCChhhccchhhhceecccc------cchhhcChHhhhhhHhhhH
Confidence 34455577887654 467788999987 7888889999999999999999 8855566888999999888
Q ss_pred eecCC-CCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCc-ccccCcccccccceee
Q 044264 161 LNLSR-LKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRRVEKFVV 237 (439)
Q Consensus 161 L~L~~-~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 237 (439)
|-+.+ |+|+.+|. .+.++..|+.|.+..|+........+..|++|..|.+..|.. ..++. .+..+.+++.+.+..+
T Consensus 120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcC
Confidence 88777 77999995 688999999999999884444556789999999999988863 44444 4666777777776554
Q ss_pred cccc--------------------------------------------------------------ccccccccccCcce
Q 044264 238 GRGV--------------------------------------------------------------ARSSELENKKNLID 255 (439)
Q Consensus 238 ~~~~--------------------------------------------------------------~~~~~l~~l~~L~~ 255 (439)
.... .....|..+++|++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 4211 01122555666666
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCe
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQ 334 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 334 (439)
|.+++|.. ...-..++.....+++|.+..|.+..+-...+..+..|+.|++.+|.++...|. +..+.+|.+
T Consensus 279 lnlsnN~i--------~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 279 LNLSNNKI--------TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred eccCCCcc--------chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 66666631 111234455555566666665555443122344566666666666666555554 566666666
Q ss_pred eeecccc
Q 044264 335 LYFYSMG 341 (439)
Q Consensus 335 L~l~~~~ 341 (439)
|++-.|+
T Consensus 351 l~l~~Np 357 (498)
T KOG4237|consen 351 LNLLSNP 357 (498)
T ss_pred eehccCc
Confidence 6665544
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-11 Score=107.90 Aligned_cols=248 Identities=18% Similarity=0.134 Sum_probs=139.0
Q ss_pred hhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCCCCc----cCChhH-------hhccCCc
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRLKIE----KLPETL-------CELYNLQ 182 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~~----~lp~~i-------~~l~~L~ 182 (439)
+-.....+..+..+++++ |.+- ..+...+.+.++|+..++++-..+ .+|+.+ -.+++|+
T Consensus 22 v~~~~~~~~s~~~l~lsg------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHHHhcccCceEEEeccC------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 334455667788888887 6532 224445566667777777665422 344322 2334555
Q ss_pred EeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccc-------------ccccccc
Q 044264 183 LLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVA-------------RSSELEN 249 (439)
Q Consensus 183 ~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~l~~ 249 (439)
+|+||+|-+-...+..+. .-+..+.+|++|.+.+|..+.. .....+.
T Consensus 96 ~ldLSDNA~G~~g~~~l~--------------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~ 155 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLE--------------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS 155 (382)
T ss_pred EeeccccccCccchHHHH--------------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC
Confidence 555555542222221110 1123344455555544443321 1123445
Q ss_pred ccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCCCcCC-
Q 044264 250 KKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINCEHLP- 324 (439)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~- 324 (439)
-+.|+++....|.... .....+...+...+.|+.+.+..|.+..- +...+..|++|+.|+|.+|.+...-.
T Consensus 156 ~~~Lrv~i~~rNrlen----~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLEN----GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CcceEEEEeecccccc----ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 5678888887774211 03355566777788999999998877641 12234589999999999988765422
Q ss_pred ----CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCC----CcccccCc
Q 044264 325 ----PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD----TIKGEIMP 396 (439)
Q Consensus 325 ----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~~~p 396 (439)
.++.+++|+.|++++|. ++.-+..-+... -....|+|+.|.+.++. +.... .......|
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a--------l~~~~p~L~vl~l~gNe----It~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA--------LKESAPSLEVLELAGNE----ITRDAALALAACMAEKP 298 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHH--------HhccCCCCceeccCcch----hHHHHHHHHHHHHhcch
Confidence 26678889999999887 333222111000 02347888888887763 21110 00112468
Q ss_pred ccceeeeccccc
Q 044264 397 RLSSLCIARCPT 408 (439)
Q Consensus 397 ~L~~L~i~~c~~ 408 (439)
.|++|.+.+|..
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 888888888843
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.5e-12 Score=116.44 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=144.3
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 174 (439)
.+..-...+++.|. ...+|..+..|..|..|.|.. |. +..+|..++++..|.+|+|+.|++..+|..
T Consensus 73 ~ltdt~~aDlsrNR------~~elp~~~~~f~~Le~liLy~------n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~ 139 (722)
T KOG0532|consen 73 DLTDTVFADLSRNR------FSELPEEACAFVSLESLILYH------NC-IRTIPEAICNLEALTFLDLSSNQLSHLPDG 139 (722)
T ss_pred cccchhhhhccccc------cccCchHHHHHHHHHHHHHHh------cc-ceecchhhhhhhHHHHhhhccchhhcCChh
Confidence 34445566677765 345566677777788888877 66 667777788888888888888888888888
Q ss_pred HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcc
Q 044264 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 254 (439)
++.|+ |+.|.+++|+ ++.+|..++.+.+|..|+.+.|. +..+|..++.+.+|+.|.+..|... .++.++..+ .|.
T Consensus 140 lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi 214 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLI 214 (722)
T ss_pred hhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-cee
Confidence 87765 7888888777 77888888877888888888777 4667777888888888887776654 455556633 577
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh---cccCccEEeecCC
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM---SLTDLRILTLSHC 317 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~---~~~~L~~L~l~~~ 317 (439)
.|++++| .+..+|-.+..+..|++|.|.+|....- |..+. ...-.|+|+...|
T Consensus 215 ~lDfScN---------kis~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCN---------KISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccC---------ceeecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 8888888 5667788888888999999988888874 44443 4455677777777
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-10 Score=107.82 Aligned_cols=183 Identities=35% Similarity=0.392 Sum_probs=139.1
Q ss_pred hhcCCceeEEeCCcccccccccccccccccccccc-ccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV-HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG 200 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~ 200 (439)
+..++.+..|++.+ +. +..+++....+. +|+.|++++|.+..+|..+..+++|+.|+++.|. +..+|...+
T Consensus 112 ~~~~~~l~~L~l~~------n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDN------NN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCC------cc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhh
Confidence 45567899999988 66 777777777774 8999999999999998888899999999999998 888888777
Q ss_pred hccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCC
Q 044264 201 KLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ 280 (439)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 280 (439)
.+++|+.|+++++. +..+|..++....|+++.+..+.. ...+..+..+.++..+.+..+ ....++..+.
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n---------~~~~~~~~~~ 252 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNN---------KLEDLPESIG 252 (394)
T ss_pred hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCc---------eeeeccchhc
Confidence 88999999999887 577777666777788888887742 234445666777777776665 2233356667
Q ss_pred CCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP 325 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 325 (439)
.+++++.|+++++.+..+ +. +....+++.|+++++......+.
T Consensus 253 ~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 777888888888888875 33 77888888888888776655543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-11 Score=108.89 Aligned_cols=265 Identities=17% Similarity=0.143 Sum_probs=132.1
Q ss_pred ccccccceeecCCCC-Ccc--CChhHhhccCCcEeecCCCCccccc--chhhhhccccceeeccCcccccc--CCccccc
Q 044264 153 EKLVHLRYLNLSRLK-IEK--LPETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYLLNRGTESLRY--LPAGIER 225 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~-~~~--lp~~i~~l~~L~~L~l~~~~~~~~l--~~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~ 225 (439)
..++++++|.+.+|. ++. +-..-..+.+|++|++..|..++.. ......+++|++++++.|..+.. +......
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 345555555555555 221 1112234555666666555443321 11223555666666666554332 1111223
Q ss_pred Ccccccccceeecccc--ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCC--c
Q 044264 226 LTSLRRVEKFVVGRGV--ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHP--H 301 (439)
Q Consensus 226 l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~--~ 301 (439)
+..++.+...+|.... .+...=+.+..+.++++..+... ....+...-..+..|+.|..+++......+ .
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l------TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL------TDEDLWLIACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc------cchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence 3444444444332211 00111112223333333333111 112233333446667777777665543101 1
Q ss_pred hhhcccCccEEeecCCCCCCcCCC---CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 302 WMMSLTDLRILTLSHCINCEHLPP---LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
-..++++|+.|.+..|...++... -.+++.|+.+++.+|..+... .+... ...+|.|++|.+++|
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl----------s~~C~~lr~lslshc 382 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL----------SRNCPRLRVLSLSHC 382 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh----------ccCCchhccCChhhh
Confidence 122667777777777765443321 345677777777776533321 11111 345788888888888
Q ss_pred CCccccccCC-CcccccCcccceeeecccccccC-CCCCCCCCCCccEEEEcCCcchhh
Q 044264 379 YVLKEWDYGD-TIKGEIMPRLSSLCIARCPTLRA-LPDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 379 ~~l~~~~~~~-~~~~~~~p~L~~L~i~~c~~l~~-l~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
..+++-..-. .....+...|+.+.+++||.+++ .-..+..+++|+.+++.+|..+.+
T Consensus 383 e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 383 ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 7665542111 11124567788888888887754 345667788888888888877654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-10 Score=104.35 Aligned_cols=193 Identities=19% Similarity=0.139 Sum_probs=88.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh--HhhccCCcEeecCCCCcccc-cchh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET--LCELYNLQLLNVESCQDLKE-LPQG 198 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~-l~~~ 198 (439)
...|++++.|+|+++..+.|.. +......+++|+.|+++.|.+.....+ -..+++|+.|.++.|..... +...
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFP----VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhCCcceeecchhhhHHhHHH----HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH
Confidence 4455555555555544443333 112233455555555555553321111 11345555555555552211 2222
Q ss_pred hhhccccceeeccCccccccCCcccccCcccccccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHH
Q 044264 199 FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLE 277 (439)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 277 (439)
...+++|+.|.+..|...........-+..|+.|++++|...+ .....++.++.|+.|.++.+.... .. ....+...
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s-i~-~~d~~s~~ 295 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS-IA-EPDVESLD 295 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch-hc-CCCccchh
Confidence 3445555555555553211111112234455555555554332 122334455555555555442110 00 00111122
Q ss_pred hCCCCCCccEEEEeeccCCccC-CchhhcccCccEEeecCCCCC
Q 044264 278 ALQPPPNLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 278 ~l~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~ 320 (439)
....+++|++|.+..|.+..+- ...+..+++|+.|.+..+.+.
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 2455777888888877774430 233446677777777766554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-10 Score=101.17 Aligned_cols=205 Identities=17% Similarity=0.122 Sum_probs=128.5
Q ss_pred CChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccce-eecccccccccccc
Q 044264 171 LPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKF-VVGRGVARSSELEN 249 (439)
Q Consensus 171 lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~l~~ 249 (439)
+|-.+.-+.+|..+.++.|. ...+......=+.|+++.+..... ...|. +--...+...... .....+.....+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~-~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTI-QDVPS-LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecccc-ccccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence 34445566777777777776 433333233445777777765432 11111 1111122211111 11122344455667
Q ss_pred ccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCc
Q 044264 250 KKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKL 329 (439)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 329 (439)
++.|+++++++| .+..+...+.-.|.++.|++++|.+.. ...++.+++|+.||+++|...+...+-..+
T Consensus 283 Wq~LtelDLS~N---------~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGN---------LITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred Hhhhhhcccccc---------chhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhhHhhh
Confidence 788999999998 667777778888999999999999888 456888999999999998766544444456
Q ss_pred CCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeeccccc
Q 044264 330 PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPT 408 (439)
Q Consensus 330 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~ 408 (439)
-+++.|.+++|. ++.++. +..+-+|..|+++++ +++.+. ....++.+|.|+.+.+.++|.
T Consensus 352 GNIKtL~La~N~-iE~LSG---------------L~KLYSLvnLDl~~N-~Ie~ld--eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETLSG---------------LRKLYSLVNLDLSSN-QIEELD--EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cCEeeeehhhhh-Hhhhhh---------------hHhhhhheecccccc-chhhHH--HhcccccccHHHHHhhcCCCc
Confidence 788888888887 544332 556667778887764 233322 222346788888888888863
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-11 Score=107.85 Aligned_cols=259 Identities=16% Similarity=0.126 Sum_probs=183.7
Q ss_pred cccceeecCCCC---CccCChhHhhccCCcEeecCCCCcccc--cchhhhhccccceeeccCccccccCC-c-ccccCcc
Q 044264 156 VHLRYLNLSRLK---IEKLPETLCELYNLQLLNVESCQDLKE--LPQGFGKLINLMYLLNRGTESLRYLP-A-GIERLTS 228 (439)
Q Consensus 156 ~~L~~L~L~~~~---~~~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~i~~l~~L~~L~l~~~~~~~~~~-~-~~~~l~~ 228 (439)
-.|+.|.++++. ...+-....+++++++|.+.+|..++. +-..-..+++|++|++..|..++... + ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 358899999988 335555678899999999999986654 22234578999999999987655432 2 2356999
Q ss_pred cccccceeecccc--ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh--
Q 044264 229 LRRVEKFVVGRGV--ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-- 304 (439)
Q Consensus 229 L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-- 304 (439)
|+++.++.|.... .+..-..+++.++++...++... ..+.+...-..++-+.++++.+|...+. ..++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~------~le~l~~~~~~~~~i~~lnl~~c~~lTD--~~~~~i 289 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL------ELEALLKAAAYCLEILKLNLQHCNQLTD--EDLWLI 289 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc------cHHHHHHHhccChHhhccchhhhccccc--hHHHHH
Confidence 9999999886533 23334567777888877655322 2344444455667778888878766552 2222
Q ss_pred --cccCccEEeecCCCCCCcCCC---CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 305 --SLTDLRILTLSHCINCEHLPP---LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 305 --~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.+..|+.|+.++|...++.+. .+++++|+.|-+.+|..+.......++ ..++.|+.+++..|.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------------rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------------RNCPHLERLDLEECG 357 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------------cCChhhhhhcccccc
Confidence 788999999999988666542 567899999999999987766555443 348899999999886
Q ss_pred CccccccCCCcccccCcccceeeecccccccCC-----CCCCCCCCCccEEEEcCCcchhhh
Q 044264 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL-----PDHLLQTTTLQKLEIWGCPNLQKQ 436 (439)
Q Consensus 380 ~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-----~~~l~~~~~L~~L~i~~c~~l~~~ 436 (439)
...+-... ......|.|+++.+++|..++.- ...-.+...|+.+++.+||.+++.
T Consensus 358 ~~~d~tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 358 LITDGTLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred eehhhhHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 55443221 12357899999999999776653 223345778999999999988764
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-11 Score=107.02 Aligned_cols=205 Identities=17% Similarity=0.078 Sum_probs=133.3
Q ss_pred hcCCceeEEeCCccccccccccccccc--cccccccccceeecCCCCCcc---CChhHhhccCCcEeecCCCCcccccch
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIP--KNIEKLVHLRYLNLSRLKIEK---LPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
+++.+||...|++ +. +...+ .....|++++.|||++|-+.. +...+..+++|+.|+++.|....-...
T Consensus 118 sn~kkL~~IsLdn------~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDN------YR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecC------cc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 5678899999987 55 44444 356789999999999988653 445567889999999998873221111
Q ss_pred -hhhhccccceeeccCcccccc-CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHH
Q 044264 198 -GFGKLINLMYLLNRGTESLRY-LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEV 275 (439)
Q Consensus 198 -~i~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 275 (439)
.-..+++|+.|.++.|..... +..-+..+|+|+.|++..|...........-+..|+.|++++|.... ...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-------~~~ 263 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-------FDQ 263 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-------ccc
Confidence 123677888999988875432 22234568889999988875332333334455678888888774211 122
Q ss_pred HHhCCCCCCccEEEEeeccCCcc-CCch-----hhcccCccEEeecCCCCC--CcCCCCCCcCCcCeeeecccc
Q 044264 276 LEALQPPPNLKHLGIHQYRGNNV-HPHW-----MMSLTDLRILTLSHCINC--EHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 276 ~~~l~~~~~L~~L~l~~~~~~~~-l~~~-----~~~~~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 341 (439)
....+.++.|+.|.++.+.+... .|.. ...+++|+.|++..|... ..+-.+..+++|+.|.+..++
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 24566788888888887776552 1222 236788888888888662 223334456677777765555
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-10 Score=99.83 Aligned_cols=226 Identities=17% Similarity=0.081 Sum_probs=121.0
Q ss_pred ccCCCCCeeEEEecCCCCCh---hhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCC
Q 044264 92 SFCSVKRLRSLLIDDNGDDE---FWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
.+.-+.+|..|.+.+...+. +.+...+|-.+.-+++|+.+.+++ +. ...+.+....-+.|+++.+.+..+
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~------~~-~~~i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSA------LS-TENIVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeec------cc-hhheeceeecCchhheeeeecccc
Confidence 33445667777776654321 223333444455566777777766 33 333333333345666666665554
Q ss_pred ccCChhHhhccCCcEeecCCCC---cccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccccc
Q 044264 169 EKLPETLCELYNLQLLNVESCQ---DLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSS 245 (439)
Q Consensus 169 ~~lp~~i~~l~~L~~L~l~~~~---~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 245 (439)
...|.-+. ...+ -|.+... ....+-..+..-..|+++++++|. +..+.+.+.-+|.++.|+++.|... ...
T Consensus 250 ~~~~~l~p-e~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~--~v~ 323 (490)
T KOG1259|consen 250 QDVPSLLP-ETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIR--TVQ 323 (490)
T ss_pred cccccccc-hhhh--cCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEecccccee--eeh
Confidence 43321110 0000 1111100 000111112223356666666665 3444445555666666666665543 222
Q ss_pred ccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCC--CcC
Q 044264 246 ELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINC--EHL 323 (439)
Q Consensus 246 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~ 323 (439)
.+..+++|+.|++++| ....+..+-..+.|+++|.+.+|.+.. .+++..+-+|..||+++|.+. ...
T Consensus 324 nLa~L~~L~~LDLS~N---------~Ls~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGN---------LLAECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred hhhhcccceEeecccc---------hhHhhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHh
Confidence 3566667777777766 334444444556677788888777766 566777777888888877653 334
Q ss_pred CCCCCcCCcCeeeecccc
Q 044264 324 PPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~ 341 (439)
..++++|-|+.+.+.+|+
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 457778888888888777
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-09 Score=89.90 Aligned_cols=125 Identities=26% Similarity=0.324 Sum_probs=43.5
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhh-cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFD-ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
+...++.|++.++. +.. +.. ++ .+.+|+.|++++ |. +..+. .+..+++|++|++++|.++.+.+
T Consensus 17 n~~~~~~L~L~~n~-----I~~-Ie~-L~~~l~~L~~L~Ls~------N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-----IST-IEN-LGATLDKLEVLDLSN------NQ-ITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TT------S---S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccc-----ccc-ccc-hhhhhcCCCEEECCC------CC-Ccccc-CccChhhhhhcccCCCCCCcccc
Confidence 44567778888776 222 222 33 467788888887 66 44453 36677888888888888877765
Q ss_pred hH-hhccCCcEeecCCCCcccccc--hhhhhccccceeeccCccccccCC----cccccCccccccccee
Q 044264 174 TL-CELYNLQLLNVESCQDLKELP--QGFGKLINLMYLLNRGTESLRYLP----AGIERLTSLRRVEKFV 236 (439)
Q Consensus 174 ~i-~~l~~L~~L~l~~~~~~~~l~--~~i~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~ 236 (439)
.+ ..+++|+.|.+++|. +..+. ..++.+++|++|++.+|+.... + ..+..+|+|+.|+...
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 54 357888888888776 44332 2356777888888887775332 2 1255666776666543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-10 Score=109.46 Aligned_cols=193 Identities=25% Similarity=0.266 Sum_probs=157.0
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
..-...+++. |. ...+|..+..+..|+.+.++.|.+..+|..++++..|.+|+++.|. +..+|..++.|+ |
T Consensus 75 tdt~~aDlsr------NR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 75 TDTVFADLSR------NR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred cchhhhhccc------cc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 3344567777 77 6778888999999999999999999999999999999999999998 888998887665 7
Q ss_pred ceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCc
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNL 285 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 285 (439)
+.|-+++|. ++.+|..++....|..|+.+.|... ..+..++.+.+|+.|.+..| ....++..+. .-.|
T Consensus 146 kvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn---------~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 146 KVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN---------HLEDLPEELC-SLPL 213 (722)
T ss_pred eeEEEecCc-cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh---------hhhhCCHHHh-CCce
Confidence 888888777 6889999999999999998877654 67778999999999999888 5566777777 4578
Q ss_pred cEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC---CCCcCCcCeeeeccc
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP---LGKLPSLEQLYFYSM 340 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~ 340 (439)
..|+++.|.+..+ |..|..+..|++|-|.+|....-... .+...-.++|+...|
T Consensus 214 i~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCceeec-chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9999999999887 99999999999999999886532111 344455666766666
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-09 Score=103.78 Aligned_cols=185 Identities=25% Similarity=0.297 Sum_probs=147.9
Q ss_pred CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCC-ceeEEeCCccccccccccccccccccccccccceeecCCCCC
Q 044264 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELT-CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 90 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
...+...+.++.+.+.++. ...++....... +|+.|++++ +. +..+|..+..+++|+.|++++|.+
T Consensus 109 ~~~~~~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~------N~-i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 109 ISELLELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSD------NK-IESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred chhhhcccceeEEecCCcc------cccCccccccchhhcccccccc------cc-hhhhhhhhhccccccccccCCchh
Confidence 3344556789999999987 334444455664 999999999 77 777777789999999999999999
Q ss_pred ccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccc
Q 044264 169 EKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELE 248 (439)
Q Consensus 169 ~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 248 (439)
..+|...+.++.|+.|+++++. +..+|..+..+..|++|.++++. ....+..+.++.++..+.+..+... ..+..++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee-eccchhc
Confidence 9999888899999999999998 88999877788889999999986 3455566888888888886665543 2356788
Q ss_pred cccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCC
Q 044264 249 NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHP 300 (439)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~ 300 (439)
.+++++.|+++.+ ....+.. +....+|+.|+++++.....++
T Consensus 253 ~l~~l~~L~~s~n---------~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNN---------QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceeccccc---------ccccccc-ccccCccCEEeccCccccccch
Confidence 8899999999998 3344444 8889999999999998877533
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-09 Score=90.79 Aligned_cols=128 Identities=24% Similarity=0.193 Sum_probs=47.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccc-cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhh-
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIE-KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGF- 199 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i- 199 (439)
+.+...++.|+|++ +. +..+. .++ .+.+|+.|++++|.++.++ .+..+++|+.|++++|. +..+...+
T Consensus 15 ~~n~~~~~~L~L~~------n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRG------NQ-ISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHH
T ss_pred cccccccccccccc------cc-ccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchH
Confidence 44566789999999 66 44443 355 5789999999999999886 57789999999999998 77776655
Q ss_pred hhccccceeeccCccccccCC--cccccCcccccccceeecccc---ccccccccccCcceeeecc
Q 044264 200 GKLINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGV---ARSSELENKKNLIDLLLYF 260 (439)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~ 260 (439)
..+++|++|.+++|.. ..+. ..++.+++|+.|++.+|.... .....+..+|+|+.|+-..
T Consensus 85 ~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4689999999998874 2221 335667777777776665432 1222345556666665443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.4e-10 Score=98.08 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=135.2
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-------ccccccccceeecC
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-------NIEKLVHLRYLNLS 164 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~~l~~L~~L~L~ 164 (439)
....+..++.+++++|... ......+.+.+.+.++|+.-++++.- . .+....+|+ .+..+++|++|+||
T Consensus 25 ~~~~~~s~~~l~lsgnt~G-~EAa~~i~~~L~~~~~L~~v~~sd~f--t-GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFG-TEAARAIAKVLASKKELREVNLSDMF--T-GRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HhcccCceEEEeccCCchh-HHHHHHHHHHHhhcccceeeehHhhh--c-CCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3456778999999998721 11123355667788899999988611 1 121233443 34456799999999
Q ss_pred CCCCc--c---CChhHhhccCCcEeecCCCCcccccch-h-------------hhhccccceeeccCccccccCC-----
Q 044264 165 RLKIE--K---LPETLCELYNLQLLNVESCQDLKELPQ-G-------------FGKLINLMYLLNRGTESLRYLP----- 220 (439)
Q Consensus 165 ~~~~~--~---lp~~i~~l~~L~~L~l~~~~~~~~l~~-~-------------i~~l~~L~~L~l~~~~~~~~~~----- 220 (439)
+|-++ . +-..+..+..|++|.+.+|. +..... . +++-++|+++....|+. ...+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A 178 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALA 178 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHH
Confidence 99865 2 22456778999999999987 332111 1 22344667776666653 3222
Q ss_pred cccccCcccccccceeecccc----ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCC
Q 044264 221 AGIERLTSLRRVEKFVVGRGV----ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGN 296 (439)
Q Consensus 221 ~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 296 (439)
..+...+.|+.+.+..|.+.. .....+..|++|+.|++..|.... .....+...+..+++|+.|.+++|...
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~----egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL----EGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh----HHHHHHHHHhcccchheeecccccccc
Confidence 224445666666666555433 222345566666666666653211 022334455566666666666666554
Q ss_pred ccCCchh-----hcccCccEEeecCCCCCCcCC-----CCCCcCCcCeeeecccc
Q 044264 297 NVHPHWM-----MSLTDLRILTLSHCINCEHLP-----PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 297 ~~l~~~~-----~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~ 341 (439)
.-....+ ...|+|+.|.+.+|.+..+.. .+...|.|+.|++++|.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4111111 145666666666665543211 13445666666666665
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-10 Score=98.01 Aligned_cols=180 Identities=18% Similarity=0.119 Sum_probs=89.2
Q ss_pred CCcEeecCCCCccc-ccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccc--ccccccccCccee
Q 044264 180 NLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVAR--SSELENKKNLIDL 256 (439)
Q Consensus 180 ~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L 256 (439)
.|++||+++..... .+...+..|.+|+.|.+.+++....+-..+++-.+|+.|+++.++..... .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555544211 22333455555555555555543333334555555666655554432211 1224556666666
Q ss_pred eecccCCcchhccCChHHHHHhC-CCCCCccEEEEeeccCCcc---CCchhhcccCccEEeecCCCCCCcC--CCCCCcC
Q 044264 257 LLYFGHGNEERKRKKDEEVLEAL-QPPPNLKHLGIHQYRGNNV---HPHWMMSLTDLRILTLSHCINCEHL--PPLGKLP 330 (439)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~ 330 (439)
.++++.... +.+-..+ .--++|..|+++++.-.-. +..-...||+|..||+++|...+.- ..+.+++
T Consensus 266 NlsWc~l~~-------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 266 NLSWCFLFT-------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred CchHhhccc-------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 666653211 1111111 1234666667766543221 0111226777777777776554431 1255667
Q ss_pred CcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 331 SLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 331 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.|++|.++.|..+. |..++. +...|.|.+|++.+|-
T Consensus 339 ~L~~lSlsRCY~i~--p~~~~~-----------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYDII--PETLLE-----------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcCCC--hHHeee-----------eccCcceEEEEecccc
Confidence 77777777776432 222222 4556777777777664
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-10 Score=100.72 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=124.7
Q ss_pred ccceeeccCcccccc-CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCC
Q 044264 204 NLMYLLNRGTESLRY-LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP 282 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 282 (439)
.|++++++....... +..-++.|.+|+.|.+.++...+.+...+++-.+|+.|+++.+.+. ........+.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~------t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF------TENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc------chhHHHHHHHhh
Confidence 588999987664332 2223577889999999888888888888888889999999887543 224445567788
Q ss_pred CCccEEEEeeccCCccCCch---hh-cccCccEEeecCCCCC---CcCCC-CCCcCCcCeeeeccccCeeEeCCcccccc
Q 044264 283 PNLKHLGIHQYRGNNVHPHW---MM-SLTDLRILTLSHCINC---EHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVE 354 (439)
Q Consensus 283 ~~L~~L~l~~~~~~~~l~~~---~~-~~~~L~~L~l~~~~~~---~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 354 (439)
+.|.+|+++.|.... +.. +. --++|+.|+++||... .++.. ...+|+|..|++++|..++. +.+..
T Consensus 260 s~L~~LNlsWc~l~~--~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~~~- 333 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFT--EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCFQE- 333 (419)
T ss_pred hhHhhcCchHhhccc--hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc---hHHHH-
Confidence 889999998887765 221 11 3467888888887532 23333 56788999999988876654 11111
Q ss_pred CCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccc
Q 044264 355 SDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 355 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~ 407 (439)
+..|+.|++|.++.|+.+..- ........|+|..|++.+|-
T Consensus 334 ---------~~kf~~L~~lSlsRCY~i~p~---~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 ---------FFKFNYLQHLSLSRCYDIIPE---TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---------HHhcchheeeehhhhcCCChH---HeeeeccCcceEEEEecccc
Confidence 556888999999888755322 22233577889999988884
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=95.48 Aligned_cols=106 Identities=24% Similarity=0.313 Sum_probs=84.1
Q ss_pred ceeEEeCCccccccccccccccccccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 127 CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
.++.|+|++ +.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|..++++++|
T Consensus 419 ~v~~L~L~~------n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDN------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCC------CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 377888888 7766678888888899999999998875 788888889999999999888666788888899999
Q ss_pred ceeeccCccccccCCcccccC-cccccccceeec
Q 044264 206 MYLLNRGTESLRYLPAGIERL-TSLRRVEKFVVG 238 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 238 (439)
++|++++|.....+|..+... .++..+++.+|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999998888777888776543 355556655554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.2e-09 Score=99.18 Aligned_cols=106 Identities=27% Similarity=0.278 Sum_probs=50.3
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+..+++|..|++.+ +. +..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|. +..+.. +..
T Consensus 91 l~~~~~l~~l~l~~------n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD------NK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LES 160 (414)
T ss_pred cccccceeeeeccc------cc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Ccc
Confidence 44555555555555 44 3333332445555555555555555543 23444445555555555 333332 334
Q ss_pred ccccceeeccCccccccCCcc-cccCcccccccceeec
Q 044264 202 LINLMYLLNRGTESLRYLPAG-IERLTSLRRVEKFVVG 238 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 238 (439)
+.+|+.+++++|.. ..+... +..+.+++.+.+..+.
T Consensus 161 l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCc
Confidence 55555555555543 222111 2444455555544443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=95.42 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=94.5
Q ss_pred ccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccce
Q 044264 157 HLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKF 235 (439)
Q Consensus 157 ~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (439)
.++.|+|+++.+. .+|..++++++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999976 889999999999999999999667899999999999999999999888899999999999999999
Q ss_pred eeccccccccccccc-cCcceeeecccC
Q 044264 236 VVGRGVARSSELENK-KNLIDLLLYFGH 262 (439)
Q Consensus 236 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 262 (439)
.|...+..+..+... .++..+.+.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999888888887764 467788888774
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-07 Score=61.45 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=18.0
Q ss_pred ccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCC
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESC 189 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~ 189 (439)
.+..+++|++|++++|.++.+++ .+..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444445555554444444432 3344444444444444
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-07 Score=79.43 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=103.5
Q ss_pred hcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhH-hhccCCcEeecCCCCcc-cccchhhh
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETL-CELYNLQLLNVESCQDL-KELPQGFG 200 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~-~~l~~~i~ 200 (439)
..+..++.|+|.+|++..|.. +...+.++|.|++|+++.|.+......+ -...+|+.|-+.++... ......+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWse----I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE----IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccchhccHHH----HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 456778888888866655554 3334567788888888887744222222 23567777777776632 12333455
Q ss_pred hccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCC
Q 044264 201 KLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ 280 (439)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 280 (439)
.++.++.|.++.|.. +.+.+..+...+ --+.+++|+...|... ..........
T Consensus 144 ~lP~vtelHmS~N~~--------------rq~n~Dd~c~e~-------~s~~v~tlh~~~c~~~------~w~~~~~l~r 196 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL--------------RQLNLDDNCIED-------WSTEVLTLHQLPCLEQ------LWLNKNKLSR 196 (418)
T ss_pred cchhhhhhhhccchh--------------hhhccccccccc-------cchhhhhhhcCCcHHH------HHHHHHhHHh
Confidence 666666666665531 111111111110 0012333333332100 1122233334
Q ss_pred CCCCccEEEEeeccCCcc-CCchhhcccCccEEeecCCCCCCc--CCCCCCcCCcCeeeeccccCeeEe
Q 044264 281 PPPNLKHLGIHQYRGNNV-HPHWMMSLTDLRILTLSHCINCEH--LPPLGKLPSLEQLYFYSMGSVKRV 346 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~ 346 (439)
.+|++..+.+..+.+.+. --.....+|.+-.|+++.+.+... +..+.++++|..|.+++++..+.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 577888888887765442 022334566666777776655432 233778888888888888855443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-07 Score=90.84 Aligned_cols=233 Identities=22% Similarity=0.208 Sum_probs=144.8
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+.+....+..+...+..++.+..+++.+|. +.+ +...+..+++|++|++++ |. +..+. .+..+..
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-----i~~-i~~~l~~~~~L~~L~ls~------N~-I~~i~-~l~~l~~ 141 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNK-----IEK-IENLLSSLVNLQVLDLSF------NK-ITKLE-GLSTLTL 141 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccc-----hhh-cccchhhhhcchheeccc------cc-ccccc-chhhccc
Confidence 3334444444444556778899999999987 333 333367889999999998 66 55553 3677788
Q ss_pred cceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|+.|++++|.+..+.. +..++.|+.+++++|. +..+... ...+.+++.+.+.++.... + ..+..+..+..+++..
T Consensus 142 L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLD 217 (414)
T ss_pred hhhheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhccc
Confidence 9999999999887763 4448899999999988 5555543 5788899999998876422 1 2333344444444444
Q ss_pred ecccccccccccccc--CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 237 VGRGVARSSELENKK--NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
+.... ...+..+. +|+.+.+..+. ....+..+..+.++..|++..+.... -..+...+.+..+..
T Consensus 218 n~i~~--~~~l~~~~~~~L~~l~l~~n~---------i~~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 218 NKISK--LEGLNELVMLHLRELYLSGNR---------ISRSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWL 284 (414)
T ss_pred cccee--ccCcccchhHHHHHHhcccCc---------cccccccccccccccccchhhccccc--cccccccchHHHhcc
Confidence 43321 11122222 27777777763 22222456667778888887777766 344445555555555
Q ss_pred cCCCCCCc---CC--CCCCcCCcCeeeecccc
Q 044264 315 SHCINCEH---LP--PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 315 ~~~~~~~~---~~--~~~~l~~L~~L~l~~~~ 341 (439)
..+..... .. ..+..+.++.+.+..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 285 NDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred CcchhcchhhhhccccccccccccccccccCc
Confidence 55544321 11 14455677777776666
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-06 Score=59.38 Aligned_cols=61 Identities=36% Similarity=0.550 Sum_probs=49.6
Q ss_pred CCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCC
Q 044264 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
++|+.|++.+|. +....+..|..+++|++|++++ |.+....+..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~-----l~~i~~~~f~~l~~L~~L~l~~------N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-----LTEIPPDSFSNLPNLETLDLSN------NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-----ESEECTTTTTTGTTESEEEETS------SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-----CCccCHHHHcCCCCCCEeEccC------CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999987 5666667889999999999998 774444556789999999999999864
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-07 Score=89.60 Aligned_cols=157 Identities=23% Similarity=0.176 Sum_probs=87.0
Q ss_pred cccceeecCCCC-C-ccCChhHhh-ccCCcEeecCCCCcc-cccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 156 VHLRYLNLSRLK-I-EKLPETLCE-LYNLQLLNVESCQDL-KELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 156 ~~L~~L~L~~~~-~-~~lp~~i~~-l~~L~~L~l~~~~~~-~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
.+|++|+++|.. + +..|..++. +|.|+.|.+++-... .++-.-..++++|..||+++++. ..+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 467777777765 2 345555553 677777777764422 12333345677777777777763 333 56777777777
Q ss_pred ccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCC-chhhcccCc
Q 044264 232 VEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHP-HWMMSLTDL 309 (439)
Q Consensus 232 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L 309 (439)
|.+.+-.... .....+..+++|+.|+++........ ..+....+.-..+|+|+.|+.++......+. .-+..-++|
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 7766544432 33345666777777777765322110 1223334444556777777777555443211 112244555
Q ss_pred cEEeecC
Q 044264 310 RILTLSH 316 (439)
Q Consensus 310 ~~L~l~~ 316 (439)
+.+..-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 5544443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=75.63 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=37.4
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCC-CccCChhHhhccCCcEeecCCCCcccccch
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
+..+++++.|++++ |. +..+|. -..+|+.|.+++|. ++.+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~------c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKD------CD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCC------CC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 44567777777776 54 455552 12346777776655 566665442 4667777776644555554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.8e-06 Score=72.45 Aligned_cols=256 Identities=16% Similarity=0.049 Sum_probs=133.3
Q ss_pred hhcCCceeEEeCCcccccccccccc----ccccccccccccceeecCCCCCc----cCCh-------hHhhccCCcEeec
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIK----EIPKNIEKLVHLRYLNLSRLKIE----KLPE-------TLCELYNLQLLNV 186 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~----~lp~-------~i~~l~~L~~L~l 186 (439)
+..+..+..++|++ |.+-+ .+...+.+-++|++.+++.-..+ .+|+ .+-+||+|+..++
T Consensus 26 l~~~d~~~evdLSG------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 26 LEMMDELVEVDLSG------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHhhcceeEEeccC------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 34467788888888 66322 23344556677888877765533 2222 2334555555555
Q ss_pred CCCCcccccchh----hhhccccceeeccCccccccCC-cccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 187 ESCQDLKELPQG----FGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 187 ~~~~~~~~l~~~----i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
++|-+....|+. +++-..|.+|.+++|.. ..+. ..++ ..|.+|. .-.-...-|.|+......|
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rig--kal~~la---------~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIG--KALFHLA---------YNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHH--HHHHHHH---------HHhhhccCCCceEEEeccc
Confidence 555443333332 23334455555554432 1110 0011 0111111 0112334567777777666
Q ss_pred CCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc-----CCchhhcccCccEEeecCCCCCCcCC-----CCCCcCC
Q 044264 262 HGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV-----HPHWMMSLTDLRILTLSHCINCEHLP-----PLGKLPS 331 (439)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~ 331 (439)
....+ ........+....+|+++.+.+|.+..- +...+..+++|+.|++.+|.++..-. .++.++.
T Consensus 168 Rleng----s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 168 RLENG----SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred hhccC----cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 42110 1122333444556899999998877631 01123478999999999988764322 2567788
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCcccccc---CCCcccccCcccceeeecccc
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDY---GDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~p~L~~L~i~~c~ 407 (439)
|+.|.+.+|-.-..-...+... ..-..+|+|..|...+...=..+.. -.......+|-|..|.+.|++
T Consensus 244 lrEL~lnDClls~~G~~~v~~~--------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRR--------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhccccchhhccccHHHHHHH--------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 9999999886222211111100 0023467777777765432111110 111233578888888888773
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.5e-06 Score=51.87 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=21.2
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCC
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 190 (439)
+|++|++++|.++.+|+.+++|++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5666666666666666666666666666666665
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-07 Score=91.15 Aligned_cols=126 Identities=16% Similarity=0.025 Sum_probs=62.4
Q ss_pred CCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeec
Q 044264 180 NLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLY 259 (439)
Q Consensus 180 ~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 259 (439)
.|...+.++|. +..+..++.-++.|++|++++|.. .+. ..+..++.|++|++++|.......-.-.+|. |+.|.+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhh-hhh-HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 34444444444 444555556666666777766653 222 2455666666666666654432222223333 5666665
Q ss_pred ccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccC-CchhhcccCccEEeecCCCC
Q 044264 260 FGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~ 319 (439)
+|. ... ...+.++++|+.|++++|-+...- ...++.+..|+.|+|.||+.
T Consensus 241 nN~---------l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNA---------LTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccH---------HHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 552 111 123344556666666665444310 11233455566666666554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.8e-07 Score=87.95 Aligned_cols=110 Identities=27% Similarity=0.214 Sum_probs=72.0
Q ss_pred cccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccC
Q 044264 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERL 226 (439)
Q Consensus 148 ~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l 226 (439)
+..++.-++.|+.|+|++|+++.+. .+..|++|++||+++|. +..+|.- ...+ +|+.|.+.+|.. +.+ .++.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNAL-TTL-RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHH-Hhh-hhHHhh
Confidence 3344555677788888888877665 67777888888888776 5555542 1222 377777777763 333 457778
Q ss_pred cccccccceeecccc-ccccccccccCcceeeecccC
Q 044264 227 TSLRRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGH 262 (439)
Q Consensus 227 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 262 (439)
.+|+.|++++|-..+ .-..-+..+..|+.|.+.+|.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888887776543 223345666677777777774
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-06 Score=85.54 Aligned_cols=235 Identities=19% Similarity=0.173 Sum_probs=110.7
Q ss_pred ccCCcEeecCCCCcccc--cchhhhhccccceeeccCc-cccccCC----cccccCcccccccceeec-ccccccccccc
Q 044264 178 LYNLQLLNVESCQDLKE--LPQGFGKLINLMYLLNRGT-ESLRYLP----AGIERLTSLRRVEKFVVG-RGVARSSELEN 249 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~--l~~~i~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~ 249 (439)
++.|+.|.+.+|..+.. +-.....+++|+.|+++++ ......+ .....+++|+.|++..+. ..+.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666654444 3334556667777776652 2111111 122345666666666655 33333333332
Q ss_pred -ccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc--CCchhhcccCccEEeecCCCC---CCcC
Q 044264 250 -KKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV--HPHWMMSLTDLRILTLSHCIN---CEHL 323 (439)
Q Consensus 250 -l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~---~~~~ 323 (439)
|++|+.|.+..+... ....+......+++|++|+++++..... +.....++++|+.|.+..+.. .+..
T Consensus 267 ~c~~L~~L~l~~c~~l------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNL------TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred hCCCcceEccCCCCcc------chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHH
Confidence 667777765544211 2345555556677777777776665431 122233566655555443321 1111
Q ss_pred C--CCCCc--CCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcc-eeeccCCCCcc-ccccCCCcccccCcc
Q 044264 324 P--PLGKL--PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLK-TIQFWDMYVLK-EWDYGDTIKGEIMPR 397 (439)
Q Consensus 324 ~--~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~-~~~~~~~~~~~~~p~ 397 (439)
. ..... ..+..+.+.+|+.++.......+ ..... .+.+.+|+.++ .+.... ..++.
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--------------~~~~~~~~~l~gc~~l~~~l~~~~----~~~~~ 402 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG--------------ISDLGLELSLRGCPNLTESLELRL----CRSDS 402 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh--------------ccCcchHHHhcCCcccchHHHHHh----ccCCc
Confidence 0 00011 12333333333333322111110 01111 33344454441 111111 12333
Q ss_pred cceeeecccccccCCCC-CCCC-CCCccEEEEcCCcchhhh
Q 044264 398 LSSLCIARCPTLRALPD-HLLQ-TTTLQKLEIWGCPNLQKQ 436 (439)
Q Consensus 398 L~~L~i~~c~~l~~l~~-~l~~-~~~L~~L~i~~c~~l~~~ 436 (439)
++.|.+..|...+.--. .... +.+++.+++.+|+.+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 88888888866543211 1111 778888889888877654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=73.41 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCc
Q 044264 274 EVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDE 349 (439)
Q Consensus 274 ~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~ 349 (439)
.....+..+++++.|++++|.+..+ |. -.++|+.|.+++|.....+|. + .++|+.|.+++|..+..+|..
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 3344456679999999999976665 62 234799999999988777775 3 369999999999767666543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.2e-06 Score=76.53 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=115.7
Q ss_pred ccceeecCCCCCccCCh--h-HhhccCCcEeecCCCCcccc---cchhhhhccccceeeccCccccccCCccc-ccCccc
Q 044264 157 HLRYLNLSRLKIEKLPE--T-LCELYNLQLLNVESCQDLKE---LPQGFGKLINLMYLLNRGTESLRYLPAGI-ERLTSL 229 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~--~-i~~l~~L~~L~l~~~~~~~~---l~~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 229 (439)
-+..|.+.++.+...-. . -+.+..++.||+.+|. +.. +-..+.+|+.|++|+++.|+....+. .+ ....+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccce
Confidence 44455566665543321 2 2356788888888887 433 33445688888888888776432211 11 123355
Q ss_pred ccccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 230 RRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 230 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+.|-+.+....- .....+..+|.++.|+++.| +++.+.+..+-... --+.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N----------------------~~rq~n~Dd~c~e~-------~s~~ 174 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN----------------------SLRQLNLDDNCIED-------WSTE 174 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc----------------------hhhhhccccccccc-------cchh
Confidence 555443322211 11122333344444444333 22222222222211 1123
Q ss_pred ccEEeecCCCCCCcCC--C-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccc
Q 044264 309 LRILTLSHCINCEHLP--P-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWD 385 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~--~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (439)
+++|....|....... . ..-+|++..+.+..|+ ++..... .+...+|.+-.|.+.. .++.+|.
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~e------------k~se~~p~~~~LnL~~-~~idswa 240 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSE------------KGSEPFPSLSCLNLGA-NNIDSWA 240 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhc------------ccCCCCCcchhhhhcc-cccccHH
Confidence 4444455544322111 1 2346788888888887 4433322 1145577777777754 2344443
Q ss_pred cCCCcccccCcccceeeecccccccCCCC------CCCCCCCccEEEEc
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPD------HLLQTTTLQKLEIW 428 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~------~l~~~~~L~~L~i~ 428 (439)
.- .+...||+|..|.+.++|.+..+.. -++.+++++.|+=+
T Consensus 241 sv--D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 241 SV--DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HH--HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 21 1335789999999999988776522 24567787777644
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.3e-06 Score=83.91 Aligned_cols=130 Identities=22% Similarity=0.149 Sum_probs=78.6
Q ss_pred CceeEEeCCcccccccccccccccccc-ccccccceeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
.+|+.|+++|.+.++ ..-|..+ ..+|.|+.|.+++-.+. .......++++|..||+++++ +..+ .++++|
T Consensus 122 ~nL~~LdI~G~~~~s-----~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS-----NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhh-----ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhcc
Confidence 568888887732221 1112222 34677888887776532 223334567888888888877 5555 567788
Q ss_pred cccceeeccCccccc-cCCcccccCcccccccceeecccc------ccccccccccCcceeeecccC
Q 044264 203 INLMYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVGRGV------ARSSELENKKNLIDLLLYFGH 262 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~ 262 (439)
++|+.|.+.+-.+.. ..-..+..+++|+.|+++...... ...+.-..+|+|+.|+.++..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888888776654322 111345677888888877654332 222334457888888888764
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-06 Score=85.42 Aligned_cols=228 Identities=19% Similarity=0.164 Sum_probs=104.8
Q ss_pred ccccceeecCCCC-Ccc--CChhHhhccCCcEeecCCC-Ccccccc----hhhhhccccceeeccCccccccC-Ccccc-
Q 044264 155 LVHLRYLNLSRLK-IEK--LPETLCELYNLQLLNVESC-QDLKELP----QGFGKLINLMYLLNRGTESLRYL-PAGIE- 224 (439)
Q Consensus 155 l~~L~~L~L~~~~-~~~--lp~~i~~l~~L~~L~l~~~-~~~~~l~----~~i~~l~~L~~L~l~~~~~~~~~-~~~~~- 224 (439)
+++|+.|.+.++. +.. +-.....+++|+.|++++| ......+ .....+.+|+.|++..+...... -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4556666666554 433 3344455666666666652 2111111 12334456666666665532221 11122
Q ss_pred cCcccccccceeecc-cc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccC-------
Q 044264 225 RLTSLRRVEKFVVGR-GV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRG------- 295 (439)
Q Consensus 225 ~l~~L~~L~l~~~~~-~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------- 295 (439)
.+++|+.|.+..|.. .+ .+......+++|++|+++++... ....+......+++|+.|.+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~------~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL------TDSGLEALLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc------hHHHHHHHHHhCcchhhhhhhhcCCCccHHHH
Confidence 256666666555542 22 22233445666777777665321 1122333344455555544433221
Q ss_pred -------C---ccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCc
Q 044264 296 -------N---NVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVV 365 (439)
Q Consensus 296 -------~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (439)
. .........+++++.+.+..|. ...... .+.+.+|+.++ ...... ..
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~--------~~~l~gc~~l~-~~l~~~------------~~ 398 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL--------ELSLRGCPNLT-ESLELR------------LC 398 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch--------HHHhcCCcccc-hHHHHH------------hc
Confidence 0 0001122355555555555544 211110 22333333231 000000 12
Q ss_pred CCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 366 AFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
.+..++.|.+..|...+.-...... .....++.+.+.+|+.+...
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~--~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLA--DSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cCCccceEecccCccccccchHHHh--hhhhccccCCccCcccccch
Confidence 2333889999988766554432211 11677888999999877543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.7e-05 Score=49.32 Aligned_cols=40 Identities=33% Similarity=0.508 Sum_probs=30.1
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
++|++|++++ +. +..+|..+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~------N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN------NQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETS------SS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccC------CC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888 76 5667776888888888888888887665
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.4e-05 Score=60.55 Aligned_cols=85 Identities=27% Similarity=0.353 Sum_probs=55.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccc-cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIE-KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG 200 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~ 200 (439)
+.....|...++++ |. ...+|+.+. ..+.+..|++++|.+.++|..+..++.|+.|+++.|. +...|..+.
T Consensus 49 l~~~~el~~i~ls~------N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 49 LSKGYELTKISLSD------NG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred HhCCceEEEEeccc------ch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 44555666667776 55 455555444 3446777777777777777777777777777777766 566666666
Q ss_pred hccccceeeccCcc
Q 044264 201 KLINLMYLLNRGTE 214 (439)
Q Consensus 201 ~l~~L~~L~l~~~~ 214 (439)
.|.+|-.|+..++.
T Consensus 121 ~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA 134 (177)
T ss_pred HHHhHHHhcCCCCc
Confidence 66676666666554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=2e-05 Score=68.17 Aligned_cols=141 Identities=17% Similarity=0.069 Sum_probs=86.8
Q ss_pred CCCCCCccEEEEeeccCCccCCch-----hhcccCccEEeecCCCCCCc-C-----CCCCCcCCcCeeeeccccCeeEeC
Q 044264 279 LQPPPNLKHLGIHQYRGNNVHPHW-----MMSLTDLRILTLSHCINCEH-L-----PPLGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 279 l~~~~~L~~L~l~~~~~~~~l~~~-----~~~~~~L~~L~l~~~~~~~~-~-----~~~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
...-|.|++.....|+.... +.. +.+-.+|+.+.+..|.+... + -.+..+.+|+.|++.+|.... .+
T Consensus 153 aa~kp~Le~vicgrNRleng-s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~-~g 230 (388)
T COG5238 153 AADKPKLEVVICGRNRLENG-SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EG 230 (388)
T ss_pred hccCCCceEEEeccchhccC-cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh-hh
Confidence 34568999999999988764 432 22446899999998876533 1 125578999999999998443 22
Q ss_pred CccccccCCCCCCCCCCcCCCCcceeeccCCCCccccc--cCCCcccccCcccceeeecccccccC------CCCCC-CC
Q 044264 348 DEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWD--YGDTIKGEIMPRLSSLCIARCPTLRA------LPDHL-LQ 418 (439)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~p~L~~L~i~~c~~l~~------l~~~l-~~ 418 (439)
...++.. ...++.|++|.+.+|---..-. +-..+....+|+|..|...++.+-.. ++... .+
T Consensus 231 S~~La~a---------l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~ 301 (388)
T COG5238 231 SRYLADA---------LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDA 301 (388)
T ss_pred HHHHHHH---------hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcc
Confidence 2222221 4567889999999984221110 00111223578888888887744222 22222 24
Q ss_pred CCCccEEEEcCC
Q 044264 419 TTTLQKLEIWGC 430 (439)
Q Consensus 419 ~~~L~~L~i~~c 430 (439)
+|-|..|.+.|+
T Consensus 302 ~p~L~~le~ngN 313 (388)
T COG5238 302 VPLLVDLERNGN 313 (388)
T ss_pred cHHHHHHHHccC
Confidence 666666666665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00028 Score=58.53 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=52.3
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhh-ccCCcEeecCCCCcccccch--hhhhc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQ--GFGKL 202 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~~l~~--~i~~l 202 (439)
.+...++|++ |. +..++ .+..+++|.+|.+..|.|+.+.+.+.. +++|..|.+.+|+ +.++.. .+..+
T Consensus 42 d~~d~iDLtd------Nd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTD------ND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASC 112 (233)
T ss_pred cccceecccc------cc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccC
Confidence 3455677777 55 33342 366677888888888887777665554 5668888887776 444322 25566
Q ss_pred cccceeeccCccc
Q 044264 203 INLMYLLNRGTES 215 (439)
Q Consensus 203 ~~L~~L~l~~~~~ 215 (439)
++|++|.+-+|+.
T Consensus 113 p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 113 PKLEYLTLLGNPV 125 (233)
T ss_pred CccceeeecCCch
Confidence 7777777766653
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00012 Score=60.76 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=42.4
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhh-hccccceeeccCccccccCC--cccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG-KLINLMYLLNRGTESLRYLP--AGIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 232 (439)
.+...+||++|.+..++ .+..++.|.+|.+.+|. +..+.+.+. .+++|..|.+.+|.. ..+. ..+..++.|+.|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 45566677777655444 24456677777776666 444433333 345666666666653 1111 123445555555
Q ss_pred cceeec
Q 044264 233 EKFVVG 238 (439)
Q Consensus 233 ~l~~~~ 238 (439)
.+.+|.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 544443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=8.8e-06 Score=70.49 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=68.6
Q ss_pred HhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCC--cCCCCCCcCCcCeeeeccccCeeEeCCcccccc
Q 044264 277 EALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCE--HLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVE 354 (439)
Q Consensus 277 ~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 354 (439)
.....++.|++|.|+-|.+.+ ...+..|.+|+.|+|..|.+.. ++..+.++|+|+.|.|..|+....-+..+-...
T Consensus 35 sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V 112 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKV 112 (388)
T ss_pred HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence 344568899999999999988 5778899999999999886543 334478899999999999997776665544333
Q ss_pred CCCCCCCCCCcCCCCcceeec
Q 044264 355 SDHGRASSSVVAFPKLKTIQF 375 (439)
Q Consensus 355 ~~~~~~~~~~~~l~~L~~L~l 375 (439)
+..+|+|++|+=
T Consensus 113 ---------LR~LPnLkKLDn 124 (388)
T KOG2123|consen 113 ---------LRVLPNLKKLDN 124 (388)
T ss_pred ---------HHHcccchhccC
Confidence 667899998874
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0002 Score=55.58 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=64.5
Q ss_pred CCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhH
Q 044264 96 VKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETL 175 (439)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i 175 (439)
...|+..++++|. +....+.+...++....|++++ |. +..+|..+..++.|+.|+++.|.+...|..+
T Consensus 52 ~~el~~i~ls~N~-----fk~fp~kft~kf~t~t~lNl~~------ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 52 GYELTKISLSDNG-----FKKFPKKFTIKFPTATTLNLAN------NE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred CceEEEEecccch-----hhhCCHHHhhccchhhhhhcch------hh-hhhchHHHhhhHHhhhcccccCccccchHHH
Confidence 3456666677765 2333333334556788888888 66 7778888888888999999998888888888
Q ss_pred hhccCCcEeecCCCCcccccchh
Q 044264 176 CELYNLQLLNVESCQDLKELPQG 198 (439)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~l~~~ 198 (439)
-.+.+|-+|+..++. ...+|-.
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHH
Confidence 788888888888776 4555543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.00015 Score=63.14 Aligned_cols=80 Identities=23% Similarity=0.192 Sum_probs=43.9
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch--hhhhccccceeeccCccccccCC-----cccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRYLP-----AGIE 224 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~~~-----~~~~ 224 (439)
..+|+.|++|.|+-|+|+.+. .+..|++|+.|.|..|. +..+.+ -+.++++|+.|.|..|+-...-+ ..+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 345666666666666666654 24556666666666554 433322 24556666666666655333322 1244
Q ss_pred cCccccccc
Q 044264 225 RLTSLRRVE 233 (439)
Q Consensus 225 ~l~~L~~L~ 233 (439)
.+|+|++|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666665
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00018 Score=59.68 Aligned_cols=66 Identities=18% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEcCCcch
Q 044264 366 AFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWGCPNL 433 (439)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~c~~l 433 (439)
.++.++.|.+.+|.++.+|...... +..|+|+.|+|++|+.+++- -.++..+++|+.|.|.+-+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3455555555555555555433221 24555555555555555442 123444555555555555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00067 Score=58.70 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=15.4
Q ss_pred ccccceeecCCCC---CccCChhHhhccCCcEeecCCCC
Q 044264 155 LVHLRYLNLSRLK---IEKLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 155 l~~L~~L~L~~~~---~~~lp~~i~~l~~L~~L~l~~~~ 190 (439)
+++|+.|.++.|. ...++..+.++++|++|++++|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4444555554442 11333333333455555554444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00061 Score=58.94 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=52.4
Q ss_pred cccccccccccceeecCCCCCccCChhHhhccCCcEeecCCC--CcccccchhhhhccccceeeccCccccc-cCCcccc
Q 044264 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESC--QDLKELPQGFGKLINLMYLLNRGTESLR-YLPAGIE 224 (439)
Q Consensus 148 ~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~--~~~~~l~~~i~~l~~L~~L~l~~~~~~~-~~~~~~~ 224 (439)
+....-.+..|+.|++.+..++.+. .+..+++|++|.++.| +....++.-..++++|+++++++|.+-. +.-..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 3343445666777777777655443 2345778888888888 3334455445566888888888876421 0011234
Q ss_pred cCcccccccceeec
Q 044264 225 RLTSLRRVEKFVVG 238 (439)
Q Consensus 225 ~l~~L~~L~l~~~~ 238 (439)
.+.+|..|++..|.
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 45555555555444
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0025 Score=32.84 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=7.4
Q ss_pred cceeecCCCCCccCChh
Q 044264 158 LRYLNLSRLKIEKLPET 174 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~ 174 (439)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.00063 Score=56.54 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=39.4
Q ss_pred CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecc
Q 044264 326 LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 326 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+..+++++.|.+.+|..+....-++++. ..|+|+.|+|++|+.+++-.... ...+++|+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~------------~~~~L~~L~lsgC~rIT~~GL~~---L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG------------LAPSLQDLDLSGCPRITDGGLAC---LLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc------------cccchheeeccCCCeechhHHHH---HHHhhhhHHHHhcC
Confidence 4556666666666666555444333321 35667777777776665543221 24566677776666
Q ss_pred ccccc
Q 044264 406 CPTLR 410 (439)
Q Consensus 406 c~~l~ 410 (439)
.+.+.
T Consensus 186 l~~v~ 190 (221)
T KOG3864|consen 186 LPYVA 190 (221)
T ss_pred chhhh
Confidence 65443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.062 Score=42.26 Aligned_cols=103 Identities=17% Similarity=0.340 Sum_probs=44.0
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCcc
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEK 170 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~ 170 (439)
.|.++.+|+.+.+... +.......|..++.|+.+.+.+ + +..++ ..+..+..|+.+.+.. .+..
T Consensus 7 ~F~~~~~l~~i~~~~~------~~~I~~~~F~~~~~l~~i~~~~------~--~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT------IKKIGENAFSNCTSLKSINFPN------N--LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESS------T--TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred HHhCCCCCCEEEECCC------eeEeChhhcccccccccccccc------c--ccccceeeeecccccccccccc-cccc
Confidence 4556667777776642 2344444566666777777654 2 22222 3355565667776654 3333
Q ss_pred CCh-hHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccC
Q 044264 171 LPE-TLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRG 212 (439)
Q Consensus 171 lp~-~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~ 212 (439)
++. .+..+++|+.+.+..+ ...++ ..+.++ +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 332 3445666666666543 22222 234454 666665543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.053 Score=42.68 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=42.6
Q ss_pred hhhcCCceeEEeCCcccccccccccccc-ccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccc-h
Q 044264 121 LFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELP-Q 197 (439)
Q Consensus 121 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-~ 197 (439)
.|..+.+|+.+.+.. . +..+ ...+..+.+|+.+.+..+ +..++. .+..++.|+.+.+.++ ...++ .
T Consensus 7 ~F~~~~~l~~i~~~~------~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~ 75 (129)
T PF13306_consen 7 AFYNCSNLESITFPN------T--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDN 75 (129)
T ss_dssp TTTT-TT--EEEETS------T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TT
T ss_pred HHhCCCCCCEEEECC------C--eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccc
Confidence 467777888888764 2 2233 344667777888888764 555553 4566767888888652 33333 2
Q ss_pred hhhhccccceeeccC
Q 044264 198 GFGKLINLMYLLNRG 212 (439)
Q Consensus 198 ~i~~l~~L~~L~l~~ 212 (439)
.+..+++|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TTECEEEETT
T ss_pred cccccccccccccCc
Confidence 455677777777754
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.017 Score=29.68 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=12.9
Q ss_pred CCcEeecCCCCcccccchhhhh
Q 044264 180 NLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 180 ~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+|++|++++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777775 5566665543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.025 Score=26.90 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=5.4
Q ss_pred ccceeecCCCCCccC
Q 044264 157 HLRYLNLSRLKIEKL 171 (439)
Q Consensus 157 ~L~~L~L~~~~~~~l 171 (439)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.0035 Score=53.38 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=44.9
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+....+||++. +. ...+-..++.+..|..|+++.+.+..+|..++.+..+.++++..|. .+..|.+.+.++
T Consensus 40 ~~kr~tvld~~s------~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSS------NR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEP 111 (326)
T ss_pred ccceeeeehhhh------hH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccC
Confidence 444555555555 43 3333344445555555555555555555555555555555555544 555555555555
Q ss_pred ccceeeccCccc
Q 044264 204 NLMYLLNRGTES 215 (439)
Q Consensus 204 ~L~~L~l~~~~~ 215 (439)
+++.++..++.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 666555555543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.0091 Score=50.93 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=73.1
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
+..+.+.+.|+++.+. ...+...|+-++.|..|+++. +. +..+|..++....++.+++..|..+..|
T Consensus 38 i~~~kr~tvld~~s~r------~vn~~~n~s~~t~~~rl~~sk------nq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR------LVNLGKNFSILTRLVRLDLSK------NQ-IKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhccceeeeehhhhhH------HHhhccchHHHHHHHHHhccH------hh-HhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 4566788999998876 334445577788889999988 66 7889999999999999999999999999
Q ss_pred hhHhhccCCcEeecCCCCccc
Q 044264 173 ETLCELYNLQLLNVESCQDLK 193 (439)
Q Consensus 173 ~~i~~l~~L~~L~l~~~~~~~ 193 (439)
.+.+..+++++++..++.+..
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccccccCCcchhhhccCcchH
Confidence 999999999999999887443
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.097 Score=28.07 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=11.8
Q ss_pred CCCccEEEEcCCcchhhh
Q 044264 419 TTTLQKLEIWGCPNLQKQ 436 (439)
Q Consensus 419 ~~~L~~L~i~~c~~l~~~ 436 (439)
+++|+.|+|++|++++..
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 456777777777766543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.25 Score=26.36 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=11.7
Q ss_pred cccceeecCCCCCccCChh
Q 044264 156 VHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~ 174 (439)
++|++|+|++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.25 Score=26.36 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=11.7
Q ss_pred cccceeecCCCCCccCChh
Q 044264 156 VHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~ 174 (439)
++|++|+|++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.58 E-value=0.064 Score=52.41 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=17.2
Q ss_pred cccceeecCCCCCc-----cCChhHhhccCCcEeecCCCC
Q 044264 156 VHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 156 ~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~ 190 (439)
..+++|.+..|.++ .+...+.....++.++++.|.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 34555555555533 233344445555555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 6e-21
Identities = 56/276 (20%), Positives = 96/276 (34%), Gaps = 61/276 (22%)
Query: 85 KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF 144
K + + +L + L + P L+ L+ + G
Sbjct: 69 KATADLLEDATQPGRVALELRSVP-----LPQ-FPDQAFRLSHLQHMTI------DAAG- 115
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK--- 201
+ E+P +++ L L L+R + LP ++ L L+ L++ +C +L ELP+
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 202 ------LINLMYLLNRGTESLRYLPAGIERLTSLR-------RVEKFVVGRGVARSSELE 248
L+NL L T +R LPA I L +L+ + +
Sbjct: 176 SGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSAL--------GPAIH 226
Query: 249 NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP-----PNLKHLGIHQYRGNNVH--PH 301
+ L + L L PP LK L + +N+ P
Sbjct: 227 HLPKLEE--LDLRGCTA----------LRNY-PPIFGGRAPLKRLILKDC--SNLLTLPL 271
Query: 302 WMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLY 336
+ LT L L L C+N LP + +LP+ +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 49/281 (17%), Positives = 82/281 (29%), Gaps = 57/281 (20%)
Query: 66 EPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDEL 125
P+ D L + + + L L ++
Sbjct: 26 RPYHDVLS-QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA-----LKA-TADLLEDA 78
Query: 126 T--CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQL 183
T AL+ + + P +L HL+++ + + +LP+T+ + L+
Sbjct: 79 TQPGRVALE------LRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131
Query: 184 LNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVAR 243
L + L+ LP L L L R L LP + +
Sbjct: 132 LTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDAS-------------- 176
Query: 244 SSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP-----PNLKHLGIHQYRGNNV 298
E + NL L L + +L P NLK L I + +
Sbjct: 177 -GEHQGLVNLQSLRL---EWTG----------IRSL-PASIANLQNLKSLKIR---NSPL 218
Query: 299 H--PHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLY 336
+ L L L L C + PP G L++L
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 16/136 (11%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
P S +++ L+SL I ++ L+ L L L LD ++
Sbjct: 198 LPASIANLQNLKSLKIRNSP-----LSA-LGPAIHHLPKLEELDL------RGCTALRNY 245
Query: 149 PKNIEKLVHLRYLNLSRL-KIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMY 207
P L+ L L + LP + L L+ L++ C +L LP +L
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 208 LL---NRGTESLRYLP 220
+L + + ++ P
Sbjct: 306 ILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 58/338 (17%), Positives = 86/338 (25%), Gaps = 116/338 (34%)
Query: 118 LPQLFDELTCLRALDFAMFQMWS----------------WNGFIKEIPKNIEKLVH--LR 159
L D L+ + A W +K +E
Sbjct: 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRV 84
Query: 160 YLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYL 219
L L + + + P+ L +LQ + +++ L ELP + L L LR L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRAL 142
Query: 220 PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL 279
PA I L LR L E L L
Sbjct: 143 PASIASLNRLRE--------------------------LSIRACPE----------LTEL 166
Query: 280 QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFY 338
P L + L +L+ L L LP + L +L+ L
Sbjct: 167 --PEPL---------ASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIR 214
Query: 339 SMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI--MP 396
+ S + A I +P
Sbjct: 215 N----------------------SPLSALGP-----------------------AIHHLP 229
Query: 397 RLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPNLQ 434
+L L + C LR P L++L + C NL
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 24/168 (14%), Positives = 41/168 (24%), Gaps = 29/168 (17%)
Query: 180 NLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR 239
+ L + L+ + S R + + +
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-NSNNPQIETRTGRAL--K 69
Query: 240 GVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP-----PNLKHLGIHQYR 294
A E + + L L L P +L+H+ I
Sbjct: 70 ATADLLEDATQPGRVALEL---RSVP----------LPQF-PDQAFRLSHLQHMTID--- 112
Query: 295 GNNVH--PHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYS 339
+ P M L LTL+ LP + L L +L +
Sbjct: 113 AAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRA 159
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 5e-14
Identities = 40/312 (12%), Positives = 82/312 (26%), Gaps = 63/312 (20%)
Query: 65 EEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDE 124
+ L ++ + + +RL + + + E+ P D
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDS 421
Query: 125 LTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSR------------------- 165
L+ I I K I++L L+ + +
Sbjct: 422 RISLKDTQIGNL-----TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476
Query: 166 -LKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL---------LNRGTES 215
+ E + L +L + + +C ++ +LP L L L +
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Query: 216 LRYLPAGIERLTSLRRVE----KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKK 271
L + ++ S+ L+ L L N+ R
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNL---EEFPASASLQKMVKLGLLDC---VHNKVRH--- 587
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILTLSHCINCEHLPP--- 325
LEA L L + N + + + L SH +++P
Sbjct: 588 ----LEAFGTNVKLTDLKLD---YNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFN 639
Query: 326 LGKLPSLEQLYF 337
+ + + F
Sbjct: 640 AKSVYVMGSVDF 651
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 8e-11
Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 27/242 (11%)
Query: 105 DDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS 164
+ N + + W + D + L + G +P I +L L+ L+
Sbjct: 303 NFNKELDMW-GDQPGVDLDNNGRVTGLSL------AGFGAKGRVPDAIGQLTELKVLSFG 355
Query: 165 RLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGI 223
E + + + F + L + +++ P
Sbjct: 356 THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415
Query: 224 ----ERLTSLRRVEKFVVGRGVAR-SSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEA 278
+ SL+ + + + S ++ L + +
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA---NSP----------FTY 462
Query: 279 LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYF 337
+ + + +L DL + L +C N LP L LP L+ L
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522
Query: 338 YS 339
Sbjct: 523 AC 524
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 9/123 (7%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
++ L ++ + N + P + L+A + N +++
Sbjct: 744 SDDFRATTLPYLSNMDVSYN-----CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLINLM 206
P I L L + I K+ E L L +L++ ++ ++ + M
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRKVDEKLTP--QLYILDIADNPNISIDVTSVCPYIEAGM 855
Query: 207 YLL 209
Y+L
Sbjct: 856 YVL 858
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 4e-09
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 24/156 (15%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
P + SV + S+ N + + + + ++ + + S+N K
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNK-----IGSEGRNISCSMDDYKGINASTVTL-SYNEIQKF 688
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPE--------TLCELYNLQLLNVESCQDLKELPQ-- 197
+ + + LS + +PE Y L +++ + L L
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDF 747
Query: 198 GFGKLINLMYLL---NRGTESLRYLPAGIERLTSLR 230
L L + N P + L+
Sbjct: 748 RATTLPYLSNMDVSYNC----FSSFPTQPLNSSQLK 779
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 44/276 (15%), Positives = 82/276 (29%), Gaps = 84/276 (30%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK- 150
+F + +L L +D N + E+ + L F S N +K IP
Sbjct: 590 AFGTNVKLTDLKLDYNQ-----IEEIPEDFCAFTDQVEGLGF------SHNK-LKYIPNI 637
Query: 151 -NIEKLVHLRYLNLSRLKIEKLPETL------CELYNLQLLNVESCQDLKELPQG-FGKL 202
N + + + ++ S KI + + N + + + +++ P F
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATG 696
Query: 203 INLMYLL---NRGT----ESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLID 255
+ ++ N T SL+ + L ID
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT----------------------ID 734
Query: 256 LLLYFGHGNEERKRKKDEEVLEALQPP------PNLKHLGIHQYRGNNVH--PHWMMSLT 307
L N+ L +L P L ++ + N P ++ +
Sbjct: 735 L-----RFNK----------LTSLSDDFRATTLPYLSNMDVS---YNCFSSFPTQPLNSS 776
Query: 308 DLRILTLSHCINCEH------LPP-LGKLPSLEQLY 336
L+ + H + E P + PSL QL
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 52/256 (20%), Positives = 90/256 (35%), Gaps = 54/256 (21%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
SF ++ L L + N + + F+ L L L+ N + IP
Sbjct: 81 VNSFKHLRHLEILQLSRNH-----IRTIEIGAFNGLANLNTLEL------FDN-RLTTIP 128
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
L L+ L L IE +P + +L+ L++ + L + +G F L NL
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 207 YL-LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
YL L +LR +P + L L EL+ N + +
Sbjct: 189 YLNLAMC--NLREIPN-LTPLIKLD---------------ELDLSGNHLSAI-------- 222
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP 325
+ L +L+ L + Q + + + +L L + L+H N LP
Sbjct: 223 ------RPGSFQGL---MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272
Query: 326 --LGKLPSLEQLYFYS 339
L LE+++ +
Sbjct: 273 DLFTPLHHLERIHLHH 288
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 34/290 (11%), Positives = 77/290 (26%), Gaps = 46/290 (15%)
Query: 68 FIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTC 127
+ N+ + + R + + + + + +
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 128 LRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVE 187
+ + I + K + +L LR + + E +CE + + E
Sbjct: 185 DTQIGQL-------SNNITFVSKAVMRLTKLRQFYMGNSPF--VAENICEAWENENS--E 233
Query: 188 SCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE----KFVVGRGVAR 243
Q K + L +L + +L LP ++ L ++ + + + G +
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293
Query: 244 S----SELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP------NLKHLGIHQY 293
++ + + + + N L+ L L
Sbjct: 294 DWQALADAPVGEKIQIIYI---GYNN----------LKTFPVETSLQKMKKLGMLECL-- 338
Query: 294 RGNN--VHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYS 339
N S L L L++ +P G +E L F
Sbjct: 339 -YNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAH 386
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 37/279 (13%), Positives = 73/279 (26%), Gaps = 39/279 (13%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL--------------------FDELTC 127
P + + L L + +G+ + D
Sbjct: 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155
Query: 128 LRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVE 187
D + S + K I K+ + + I + + + L L+ +
Sbjct: 156 EDFSDLIKDCINS-DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214
Query: 188 SCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS--S 245
+ + E + N Y T + L L VE V +
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVE--VYNCPNLTKLPT 267
Query: 246 ELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH----PH 301
L+ + + + G + K D + L ++ + I NN+
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG---YNNLKTFPVET 324
Query: 302 WMMSLTDLRILTLSHC-INCEHLPPLGKLPSLEQLYFYS 339
+ + L +L + + LP G L L
Sbjct: 325 SLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAY 362
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 8/122 (6%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
++ L + + N ++ P + L+ + N ++E
Sbjct: 504 SDDFRATTLPYLVGIDLSYN-----SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMY 207
P+ I L L + I K+ E + N+ +L+++ ++ I
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGM 615
Query: 208 LL 209
+
Sbjct: 616 YM 617
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 28/226 (12%)
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLC 176
+ + L G +P I +L L L L + P+ +
Sbjct: 77 LNSNGRVTGLSL------EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130
Query: 177 ELYNLQLLNVESCQDLKELPQGFGKLI--NLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234
+ + K + +L+ + + ++ +
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190
Query: 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYR 294
S + L + + A ++ +
Sbjct: 191 L-SNNITFVSKAVMRLTKLRQFYMG---NSP----------FVAENICEAWENENSEYAQ 236
Query: 295 GNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYS 339
+L DL + + +C N LP L LP ++ +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 51/278 (18%)
Query: 88 PFPISFCSVKRLRSLLIDDN---GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF 144
P ++ ++ + + N ++ ++ + +N
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI------GYNNL 317
Query: 145 IK-EIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKL 202
+ +++K+ L L ++E L LN+ Q + E+P G
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFT 376
Query: 203 INLMYLL---NRGTESLRYLPA--GIERLTSLRRV-------EKFVVGRGVARSSELENK 250
+ L N+ L+Y+P + ++ + +
Sbjct: 377 EQVENLSFAHNK----LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHL--------GIHQYRGNNVHPHW 302
N+ + L N + + E L + I + +
Sbjct: 433 INVSSINL---SNN-----QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE-NEN 483
Query: 303 MMSLTDLRILTLSHCINC-EHLPP---LGKLPSLEQLY 336
+ L + L N L LP L +
Sbjct: 484 FKNTYLLTSIDLRF--NKLTKLSDDFRATTLPYLVGID 519
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 69/285 (24%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
P S +K+L L N L LP L +L+ ++N I E
Sbjct: 321 PVETSLQKMKKLGMLECLYNQ-----LEGKLPAFGS-EIKLASLNL------AYN-QITE 367
Query: 148 IPKNI-EKLVHLRYLNLSRLKIEKLPETL--CELYNLQLLNVESCQ-------DLKELPQ 197
IP N + L+ + K++ +P + + ++ + + L
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427
Query: 198 GFGKLINLMYLL---NRGTESLRYLPAGI-ERLTSLRRV-------EKFVVGRGVARSSE 246
K IN+ + N+ + P + + L + + +
Sbjct: 428 TPFKGINVSSINLSNNQ----ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 247 LENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP------PNLKHLGIHQYRGNNVH- 299
+N L + L N+ L L P L + + N+
Sbjct: 484 FKNTYLLTSIDL---RFNK----------LTKLSDDFRATTLPYLVGIDLS---YNSFSK 527
Query: 300 -PHWMMSLTDLRILTLSHCINCEH------LPP-LGKLPSLEQLY 336
P ++ + L+ + + + + P + PSL QL
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 51/255 (20%), Positives = 95/255 (37%), Gaps = 46/255 (18%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
F + ++ ++ +T+ + +L + L G IK I
Sbjct: 18 FTDT--ALAEKMKTVLGKTN-----VTDTVS--QTDLDQVTTLQA------DRLG-IKSI 61
Query: 149 PKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL 208
+E L +L +N S ++ + L L L + + + Q + ++ L NL L
Sbjct: 62 D-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGL 117
Query: 209 L---NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
N+ + + ++ LT+L R+E + ++ S L +L L GN
Sbjct: 118 TLFNNQ----ITDIDP-LKNLTNLNRLE--LSSNTISDISALSGLTSLQQLSF----GN- 165
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV-HPHWMMSLTDLRILTLSHCINCEHLP 324
+ D + L L L+ L I N V + LT+L L ++ +
Sbjct: 166 ---QVTDLKPLANL---TTLERLDIS---SNKVSDISVLAKLTNLESLIATNN-QISDIT 215
Query: 325 PLGKLPSLEQLYFYS 339
PLG L +L++L
Sbjct: 216 PLGILTNLDELSLNG 230
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 54/271 (19%), Positives = 101/271 (37%), Gaps = 56/271 (20%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+S + ++ +L D G + + + L L ++F S N + +I
Sbjct: 39 TVSQTDLDQVTTLQADRLG-----IKSIDG--VEYLNNLTQINF------SNN-QLTDIT 84
Query: 150 KNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLL 209
++ L L + ++ +I + L L NL L + + Q + ++ L NL L
Sbjct: 85 -PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLE 140
Query: 210 NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKR 269
++ + A + LTSL+++ G V L N L L + N +
Sbjct: 141 LSSN-TISDISA-LSGLTSLQQLS---FGNQVTDLKPLANLTTLERLDIS---SN----K 188
Query: 270 KKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC------------ 317
D VL L NL+ L + +++ P + LT+L L+L+
Sbjct: 189 VSDISVLAKL---TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLT 243
Query: 318 ----INCEH-----LPPLGKLPSLEQLYFYS 339
++ + L PL L L +L +
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGA 274
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 50/249 (20%), Positives = 82/249 (32%), Gaps = 59/249 (23%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+ L SL+ +N ++++ P LT L L + N +K+I
Sbjct: 194 VLAKLTNLESLIATNNQ-----ISDITP--LGILTNLDELSL------NGN-QLKDIG-T 238
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNR 211
+ L +L L+L+ +I L L L L L + + Q + + L L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELN 295
Query: 212 GTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKK 271
+L + S + N KNL L LY N
Sbjct: 296 EN-----------QLEDI---------------SPISNLKNLTYLTLY---FNNISD--- 323
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNNV-HPHWMMSLTDLRILTLSHCINCEHLPPLGKLP 330
+ + L+ L + N V + +LT++ L+ H L PL L
Sbjct: 324 ----ISPVSSLTKLQRLFFY---NNKVSDVSSLANLTNINWLSAGHN-QISDLTPLANLT 375
Query: 331 SLEQLYFYS 339
+ QL
Sbjct: 376 RITQLGLND 384
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 51/261 (19%), Positives = 83/261 (31%), Gaps = 50/261 (19%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
L + +N LT++ P LT L + + N I +I + L
Sbjct: 68 NNLTQINFSNNQ-----LTDITP--LKNLTKLVDILM------NNNQ-IADIT-PLANLT 112
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL-LN---RG 212
+L L L +I + L L NL L + S + ++ L +L L
Sbjct: 113 NLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTD 169
Query: 213 TESLRYLPA------------GIERLTSLRRVEKFVVGR-GVARSSELENKKNLIDLLLY 259
+ L L I L L +E + ++ + L NL +L L
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Query: 260 FGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV-HPHWMMSLTDLRILTLSHCI 318
+ + L NL L + N + + + LT L L L
Sbjct: 230 GNQLKD----------IGTLASLTNLTDLDLA---NNQISNLAPLSGLTKLTELKLGAN- 275
Query: 319 NCEHLPPLGKLPSLEQLYFYS 339
++ PL L +L L
Sbjct: 276 QISNISPLAGLTALTNLELNE 296
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 51/252 (20%), Positives = 99/252 (39%), Gaps = 42/252 (16%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
++ L L + N ++++ LT L+ L F N P
Sbjct: 128 DPLKNLTNLNRLELSSNT-----ISDISA--LSGLTSLQQLSFG-------NQVTDLKP- 172
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLL- 209
+ L L L++S K+ + L +L NL+ L + Q + ++ G L NL L
Sbjct: 173 -LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSL 228
Query: 210 --NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEER 267
N+ + + LT+L ++ + ++ + L L +L L N+
Sbjct: 229 NGNQLKD-----IGTLASLTNLTDLD--LANNQISNLAPLSGLTKLTELKLG---ANQIS 278
Query: 268 KRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLG 327
+ L L +L +++ + ++ P + +L +L LTL N + P+
Sbjct: 279 N-------ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-NISDISPVS 328
Query: 328 KLPSLEQLYFYS 339
L L++L+FY+
Sbjct: 329 SLTKLQRLFFYN 340
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
+ +L L + N ++ + P LT L L+ + N +++I
Sbjct: 259 APLSGLTKLTELKLGANQ-----ISNISP--LAGLTALTNLEL------NENQ-LEDIS- 303
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLN 210
I L +L YL L I + + L LQ L + + + ++ L N+ +L
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSA 360
Query: 211 RGTESLRYLPAGIERLTSLRRV 232
+ + L + LT + ++
Sbjct: 361 GHNQ-ISDLTP-LANLTRITQL 380
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 47/264 (17%), Positives = 88/264 (33%), Gaps = 54/264 (20%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
++ +T+V+ +EL + L + + I IE L
Sbjct: 22 AEGIRAVLQKAS-----VTDVVT--QEELESITKLVV------AGEK-VASIQ-GIEYLT 66
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL-LNR---- 211
+L YLNL+ +I + L L L L + + + + ++ L NL L LN
Sbjct: 67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNIS 123
Query: 212 ------GTESLRYL----------PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLID 255
+ L + + +T L + V V + + N +L
Sbjct: 124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL--TVTESKVKDVTPIANLTDLYS 181
Query: 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLS 315
L L N+ + L +L + + + ++ P + ++T L L +
Sbjct: 182 LSLN---YNQIED-------ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229
Query: 316 HCINCEHLPPLGKLPSLEQLYFYS 339
+ L PL L L L +
Sbjct: 230 NN-KITDLSPLANLSQLTWLEIGT 252
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 50/269 (18%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
++ +L +L I N +T++ LT LR L + + I +I
Sbjct: 82 SPLSNLVKLTNLYIGTNK-----ITDISA--LQNLTNLRELYL------NEDN-ISDIS- 126
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL-L 209
+ L + LNL L + L L V + +K++ L +L L L
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSL 184
Query: 210 N----RGTESLRYLPA------------GIERLTSLRRVEKFVVGR-GVARSSELENKKN 252
N L L + I + ++ R+ +G + S L N
Sbjct: 185 NYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ 244
Query: 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV-HPHWMMSLTDLRI 311
L L + N+ + A++ LK L + N + + +L+ L
Sbjct: 245 LTWLEIG---TNQISD-------INAVKDLTKLKMLNVG---SNQISDISVLNNLSQLNS 291
Query: 312 LTLSHC-INCEHLPPLGKLPSLEQLYFYS 339
L L++ + E + +G L +L L+
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 43/252 (17%), Positives = 89/252 (35%), Gaps = 38/252 (15%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
++ ++ SL + N L L + +T L L + + +K++
Sbjct: 126 SPLANLTKMYSLNLGAN-----HNLSDLSPLSN-MTGLNYLTV------TESK-VKDVT- 171
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLL- 209
I L L L+L+ +IE + L L +L Q + ++ + L L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDIT-PVANMTRLNSLKI 228
Query: 210 --NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEER 267
N+ + L + L+ L + + ++ + +++ L L + N+
Sbjct: 229 GNNK----ITDLS-PLANLSQLTWL--EIGTNQISDINAVKDLTKLKMLNVG---SNQIS 278
Query: 268 KRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLG 327
+ L L L ++ + N + LT+L L LS + + PL
Sbjct: 279 D-------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLA 330
Query: 328 KLPSLEQLYFYS 339
L ++ F +
Sbjct: 331 SLSKMDSADFAN 342
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 53/256 (20%), Positives = 88/256 (34%), Gaps = 54/256 (21%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+F + L L + N + ++ F+ L L L+ N ++ IP
Sbjct: 92 ADTFRHLHHLEVLQLGRNS-----IRQIEVGAFNGLASLNTLEL------FDN-WLTVIP 139
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
E L LR L L IE +P + +L L++ + L+ + +G F L NL
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 207 YL-LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
YL L +++ +P + L L ELE N +
Sbjct: 200 YLNLGMC--NIKDMPN-LTPLVGLE---------------ELEMSGNHFPEI-------- 233
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP 325
L +LK L + + + + + L L L L+H N LP
Sbjct: 234 ------RPGSFHGL---SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283
Query: 326 --LGKLPSLEQLYFYS 339
L L +L+ +
Sbjct: 284 DLFTPLRYLVELHLHH 299
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 60/258 (23%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
+ +++++ + ++++ + V L L LD S N ++E
Sbjct: 302 LSTVYSLLEKVKRITVENSK-----VFLVPCSFSQHLKSLEFLDL------SENLMVEEY 350
Query: 149 PKN---IEKLVHLRYLNLSRLKIEKLPE---TLCELYNLQLLNVESCQDLKELPQGFGKL 202
KN L+ L LS+ + + + L L NL L++ +P
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWP 409
Query: 203 INLMYLL---NRGTESLRYLPAGIERLT----SLRRVEKFVVGRGVARSSELENKKNLID 255
+ +L +P +E L +L F+ L +
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL--------------PRLQE 455
Query: 256 LLLYFGHGNEERKRKKDEEVLEALQP---PPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312
L + N+ L+ L P L + I + + +V LT L+ +
Sbjct: 456 LYI---SRNK----------LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502
Query: 313 TLS----HCINCEHLPPL 326
L C +C + L
Sbjct: 503 WLHTNPWDC-SCPRIDYL 519
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 39/264 (14%), Positives = 78/264 (29%), Gaps = 27/264 (10%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
F + L+ L + N + + LF LT L+ L EI
Sbjct: 91 SSWFGPLSSLKYLNLMGNP-----YQTLGVTSLFPNLTNLQTLRI------GNVETFSEI 139
Query: 149 PKN-IEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG-FGKLINL 205
+ L L L + L + ++L + ++ L + + L + L ++
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSV 198
Query: 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL-----LYF 260
YL R T R+ + + ++K V L+ + + F
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Query: 261 GHGNEERKRKKDEEVLEALQPPP-----NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLS 315
+ + + ++ L I Q+ L ++ +T+
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318
Query: 316 H-CINCEHLPPLGKLPSLEQLYFY 338
+ + L SLE L
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLS 342
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 30/202 (14%)
Query: 147 EIPKNIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
IP + ++ L+LS KI + L NLQ+L ++S + + + F L +
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGS 75
Query: 205 LMYLL---NRGTESLRYLPAG-IERLTSLRRVE----KFVVGRGVARSSELENKKNLIDL 256
L +L N L L + L+SL+ + + + + +S N NL L
Sbjct: 76 LEHLDLSDNH----LSSLSSSWFGPLSSLKYLNLMGNPY---QTLGVTSLFPNLTNLQTL 128
Query: 257 LLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316
+ GN E + L +L L I N + S+ D+ LTL
Sbjct: 129 RI----GNVETFSEIRRIDFAGL---TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 317 CINCEHLPP--LGKLPSLEQLY 336
L L S+ L
Sbjct: 182 S-ESAFLLEIFADILSSVRYLE 202
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 65/257 (25%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+ ++ ++ I +F+L L ++ L ++ + + + +P +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV------ENSK-VFLVPCS 328
Query: 152 I-EKLVHLRYLNLSRLKIEKLPETLCE----LYNLQLLNVESCQ--DLKELPQGFGKLIN 204
+ L L +L+LS + + +LQ L + +++ + L N
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 205 LMYL---LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261
L L N +P + +R + NL
Sbjct: 389 LTSLDISRNT----FHPMPDSCQWPEKMRFL-------------------NL-------- 417
Query: 262 HGNEERKRKKDEEVLEALQP--PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCIN 319
+ ++ P L+ L + NN + + L L+ L +S
Sbjct: 418 SSTG----------IRVVKTCIPQTLEVLDVS----NNNLDSFSLFLPRLQELYISRN-K 462
Query: 320 CEHLPPLGKLPSLEQLY 336
+ LP P L +
Sbjct: 463 LKTLPDASLFPVLLVMK 479
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 48/252 (19%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTC--LRALDFAMFQMWSWNGFIKEI 148
+ +++ L +D ++ P +F+ L + +++ + F
Sbjct: 222 LKNSTIQSLWLGTFEDMD-----DEDISPAVFEGLCEMSVESINL------QKHYFFNIS 270
Query: 149 PKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMY 207
L+ L+L+ + +LP L L L+ L + + + + L Q +L +
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTH 329
Query: 208 L-LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEE 266
L + T+ L +E L +LR +DL ++
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRE----------------------LDL-----SHDDI 362
Query: 267 RKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC--INCEHLP 324
L L +L+ L + ++ L +L L+ +
Sbjct: 363 ETSDCCNLQLRNL---SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 325 PLGKLPSLEQLY 336
P L L+ L
Sbjct: 420 PFQNLHLLKVLN 431
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 43/261 (16%), Positives = 76/261 (29%), Gaps = 40/261 (15%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
I + K L SL + N ++ + L+ LDF N I +
Sbjct: 122 FIPLHNQKTLESLYLGSNH-----ISSIKLPKGFPTEKLKVLDF------QNN-AIHYLS 169
Query: 150 KN-IEKLVHLR--YLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG--FGKLIN 204
K + L LNL+ I + + Q LN Q+L + +G + +
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229
Query: 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR----GVARSSELENKKNLIDLLLYF 260
L + + VE + + ++ ++ L +L L
Sbjct: 230 LWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDL-- 285
Query: 261 GHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILTLSHC 317
E+ L LK L + N + + L L++
Sbjct: 286 -TAT------HLSELPSGLVGLSTLKKLVLS---ANKFENLCQISASNFPSLTHLSIKGN 335
Query: 318 INCEHLPP--LGKLPSLEQLY 336
L L L +L +L
Sbjct: 336 TKRLELGTGCLENLENLRELD 356
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 48/286 (16%), Positives = 90/286 (31%), Gaps = 61/286 (21%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
P + S+ + + + + F + L+ LD + + E
Sbjct: 245 PAVFEGLCEMSVESINLQKH-----YFFNISSNTFHCFSGLQELDL------TATH-LSE 292
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVES-CQDLKELPQGFGKLINL 205
+P + L L+ L LS K E L + + +L L+++ + L+ L NL
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 206 MYL---------------LNRGTESLRYL-----------PAGIERLTSLRRVE----KF 235
L R L+ L + L ++ +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 236 VVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQ--- 292
+ S +N L L L + E++ + L P L+HL +
Sbjct: 413 ---KVKDAQSPFQNLHLLKVLNL---SHS--LLDISSEQLFDGL---PALQHLNLQGNHF 461
Query: 293 YRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLY 336
+GN + + +L L IL LS C + + L + +
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVD 506
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 48/261 (18%), Positives = 80/261 (30%), Gaps = 42/261 (16%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
P + L+ L++ N + L L N E+
Sbjct: 293 LPSGLVGLSTLKKLVLSANK-----FENLCQISASNFPSLTHLSI------KGNTKRLEL 341
Query: 149 PKN-IEKLVHLRYLNLSRLKIEKLP---ETLCELYNLQLLNVESCQDLKELPQGFGKLIN 204
+E L +LR L+LS IE L L +LQ LN+ + L + F +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 205 LMYL-LNR---GTESLRYLPAGIERLTSLR----RVEKFVVGRGVARSSELENKKNLIDL 256
L L L + + + L L ++ + L L
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-------SEQLFDGLPALQHL 454
Query: 257 LLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILT 313
L GN K + + +LQ L+ L + + + H SL + +
Sbjct: 455 NL---QGN--HFPKGNIQKTNSLQTLGRLEILVLS---FCDLSSIDQHAFTSLKMMNHVD 506
Query: 314 LSH-CINCEHLPPLGKLPSLE 333
LSH + + L L +
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY 527
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 40/204 (19%), Positives = 61/204 (29%), Gaps = 25/204 (12%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLI 203
+ EIP + L S + + T L NL L++ CQ F
Sbjct: 24 LNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81
Query: 204 NLMYLL---NRGTESLRYLPAGIERLTSLRRVEKFVVGR---GVARSSELENKKNLIDLL 257
L L+ N L ++ L+ + ++ + L N+K L L
Sbjct: 82 RLDTLVLTANP----LIFMAETA--LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135
Query: 258 LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317
L N K L P LK L + + M SL L+L+
Sbjct: 136 L---GSNHISSIK-----LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187
Query: 318 INC-EHLPP-LGKLPSLEQLYFYS 339
N + P + L F
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGG 211
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 35/289 (12%), Positives = 74/289 (25%), Gaps = 61/289 (21%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
L N L + F L L LD + + L
Sbjct: 35 TECLEFSFNV-----LPTIQNTTFSRLINLTFLDL------TRCQIYWIHEDTFQSQHRL 83
Query: 159 RYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL-------- 208
L L+ + + L L+ L + + L L
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS 142
Query: 209 -----LNRGTESLRYL-----------PAGIERLTSLRRVE------KF-VVGRGVARSS 245
TE L+ L + L + + G S+
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202
Query: 246 ELE-----NKKNLIDLLLYFGHGNEER---------KRKKDEEVLEALQPPPNLKHLGIH 291
+ +NL+ + + + + + +++ + +
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 292 QYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYS 339
++ N+ + + L+ L L+ + LP L L +L++L +
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSA 310
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 20/149 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWN---GFIK 146
F ++ L+ L + + L QLFD L L+ L+ N
Sbjct: 418 QSPFQNLHLLKVLNLSHSL-----LDISSEQLFDGLPALQHLNL------QGNHFPKGNI 466
Query: 147 EIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
+ +++ L L L LS + + L + +++ + L L
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKG 525
Query: 205 LMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
+ LN + + + + L+ R +
Sbjct: 526 IY--LNLASNHISIILPSLLPILSQQRTI 552
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 38/263 (14%), Positives = 79/263 (30%), Gaps = 49/263 (18%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
+ + L+ L + N + E P F + L L +
Sbjct: 162 SEELDIFANSSLKKLELSSNQ-----IKEFSPGCFHAIGRLFGLFL------NNVQLGPS 210
Query: 148 IPKNI---EKLVHLRYLNLSRLKIEKLPETL---CELYNLQLLNVESCQDLKEL-PQGFG 200
+ + + +R L+LS ++ T + NL +L++ L + F
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFA 269
Query: 201 KLINLMYLLNRGTESLRYLPAG-IERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLY 259
L L Y ++++L + + L ++R L K++ +
Sbjct: 270 WLPQLEYFFLEYN-NIQHLFSHSLHGLFNVR---------------YLNLKRSFTKQSIS 313
Query: 260 FGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH-CI 318
+ + Q L+HL + + + L +L+ L+LS+
Sbjct: 314 LASLPKID--------DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 319 NCEHLPPLG----KLPSLEQLYF 337
+ L L L
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNL 388
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 45/263 (17%), Positives = 80/263 (30%), Gaps = 36/263 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
P + L+ L + N L+++ + F T L L N K
Sbjct: 66 PELCQKLPMLKVLNLQHNE-----LSQLSDKTFAFCTNLTELHL------MSNSIQKIKN 114
Query: 150 KNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQ---GFGKLINL 205
K +L L+LS + T +L NLQ L + + + ++ L +L
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173
Query: 206 MYL---LNRGTESLRYLPAG-IERLTSLRRV---EKFVVGRGVARSSELENKKNLIDLLL 258
L N+ ++ G + L + + + ++ +L L
Sbjct: 174 KKLELSSNQ----IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 259 YFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCI 318
+ + L+ NL L + N V L L L +
Sbjct: 230 ---SNS--QLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN- 282
Query: 319 NCEHLPP--LGKLPSLEQLYFYS 339
N +HL L L ++ L
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKR 305
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 55/265 (20%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
F K L +L + NG L+ +L L+ L S N
Sbjct: 114 NNPFVKQKNLITLDLSHNG-----LSSTKLGTQVQLENLQELLL------SNNKIQALKS 162
Query: 150 KNIE--KLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLINLM 206
+ ++ L+ L LS +I++ P + L L + + Q L + +
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222
Query: 207 YL--LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGN 264
+ L+ L L NL L L + + N
Sbjct: 223 SIRNLSLSNSQLSTTSNTT--FLGL-------------------KWTNLTMLDLSYNNLN 261
Query: 265 EERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP 324
++ P L++ + ++ H + L ++R L L + +
Sbjct: 262 VVGN--------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 325 ----------PLGKLPSLEQLYFYS 339
L LE L
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMED 338
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 51/254 (20%), Positives = 84/254 (33%), Gaps = 62/254 (24%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
+ L + N L + F + L +LD +N K P+ +KL L
Sbjct: 27 ITVLNLTHNQ-----LRRLPAANFTRYSQLTSLDV------GFNTISKLEPELCQKLPML 75
Query: 159 RYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL---NRGT 213
+ LNL ++ +L + T NL L++ S ++++ F K NL+ L N
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG-- 132
Query: 214 ESLRYLPAG-IERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKD 272
L G +L +L+ + L N N I L
Sbjct: 133 --LSSTKLGTQVQLENLQEL-------------LLSN--NKIQAL--------------K 161
Query: 273 EEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILTLSHC----INCEHLPP 325
E L+ +LK L + N P ++ L L L++ E L
Sbjct: 162 SEELDIFA-NSSLKKLELS---SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 326 LGKLPSLEQLYFYS 339
S+ L +
Sbjct: 218 ELANTSIRNLSLSN 231
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 34/264 (12%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDEL--TCLRALDFAMFQMWSWNGFIKEIP 149
F + L+ L + ++ L + + F L + L L+ + N K
Sbjct: 348 MFTGLINLKYLSLSNS---FTSLRTLTNETFVSLAHSPLHILNL------TKNKISKIES 398
Query: 150 KNIEKLVHLRYLNLS--RLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
L HL L+L + E + L N+ + + + +L + F + +L
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQ 457
Query: 207 YLLNRGT--ESLRYLPAGIERLTSLR-------RVEKFVVGRGVARSSELENKKNLIDLL 257
L+ R +++ P+ + L +L + LE + L L
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-------DDMLEGLEKLEILD 510
Query: 258 LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317
L + K + L+ +L L + + + L +L+I+ L
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Query: 318 INCEHLPP--LGKLPSLEQLYFYS 339
N LP SL+ L
Sbjct: 571 -NLNTLPASVFNNQVSLKSLNLQK 593
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 17/124 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIKEI 148
+F + L L + N + + L Q + L + + S+N +++
Sbjct: 398 SDAFSWLGHLEVLDLGLNE-----IGQELTGQEWRGLENIFEIYL------SYNKYLQLT 446
Query: 149 PKNIEKLVHLRYLNLS--RLK-IEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
+ + L+ L L LK ++ P L NL +L++ + + + L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEK 505
Query: 205 LMYL 208
L L
Sbjct: 506 LEIL 509
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 46/278 (16%), Positives = 84/278 (30%), Gaps = 61/278 (21%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTC--LRALDFAMFQMWSWNGFIKEIP 149
+ +R+L + ++ L+ F L L LD S+N
Sbjct: 217 LELANTSIRNLSLSNSQ-----LSTTSNTTFLGLKWTNLTMLDL------SYNNLNVVGN 265
Query: 150 KNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVE--------SCQDLKELPQG-F 199
+ L L Y L I+ L +L L+N++ LN++ S L ++ F
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325
Query: 200 GKLINLMYLL---NRGTESLRYLPAGIERLTSLR----RVEKFVVGRGVARSSELENKKN 252
L L +L N + G+ L L + S
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPP-----PNLKHLGIHQYRGNN----VHPHWM 303
L +L N+ + ++ +L+ L + N +
Sbjct: 386 L-NL-----TKNK----------ISKIESDAFSWLGHLEVLDLG---LNEIGQELTGQEW 426
Query: 304 MSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYS 339
L ++ + LS+ L +PSL++L
Sbjct: 427 RGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRR 463
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 38/158 (24%), Positives = 54/158 (34%), Gaps = 28/158 (17%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
SF V L+ L++ + P F L L LD S N
Sbjct: 446 TRNSFALVPSLQRLMLRRV---ALKNVDSSPSPFQPLRNLTILDL------SNNNIANIN 496
Query: 149 PKNIEKLVHLRYLNLSRLKIEKL---------PETLCELYNLQLLNVESCQDLKELPQG- 198
+E L L L+L + +L L L +L +LN+ES E+P
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEV 555
Query: 199 FGKLINLMYLL---NRGTESLRYLPAGI-ERLTSLRRV 232
F L L + N L LPA + SL+ +
Sbjct: 556 FKDLFELKIIDLGLNN----LNTLPASVFNNQVSLKSL 589
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFW---LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIK 146
+++L L + N W L+ L L+ NGF +
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL------ESNGFDE 550
Query: 147 EIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGF--GKLI 203
+ + L L+ ++L + L +L+ LN++ + + +
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFR 609
Query: 204 NLMYL 208
NL L
Sbjct: 610 NLTEL 614
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 59/280 (21%), Positives = 82/280 (29%), Gaps = 90/280 (32%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
+ +L+I DN LT LP L EL L S N + +P L+
Sbjct: 61 AHITTLVIPDNN-----LTS-LPALPPELRTLEV---------SGN-QLTSLPVLPPGLL 104
Query: 157 HLRYLNLSRLKIEKLPETLCELY--------------NLQLLNVESCQDLKELPQGFGKL 202
L + + LP LC+L+ LQ L+V Q L LP +L
Sbjct: 105 ELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSEL 163
Query: 203 INLMYLLNRGTE----------------SLRYLPAGIERLTSLRRVEKFVVGRGVARSSE 246
L N+ T L LP L L
Sbjct: 164 CKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL---------------WA 208
Query: 247 LENK--------KNLIDLLLYFGHGNEERKRKKDEEVLEALQP-PPNLKHLGIHQYRGNN 297
N+ L +L++ GN L +L P LK L + N
Sbjct: 209 YNNRLTSLPALPSGLKELIVS---GNR----------LTSLPVLPSELKELMVS----GN 251
Query: 298 VHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLY 336
M + L L++ LP L L S +
Sbjct: 252 RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 57/186 (30%)
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216
LN+ + LP+ L ++ L + L LP +L L N+ L
Sbjct: 41 GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPALPPELRTLEVSGNQ----L 93
Query: 217 RYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVL 276
LP L L N + L
Sbjct: 94 TSLPVLPPGLLELS---------------IFSNPLTHLPAL------------------- 119
Query: 277 EALQPPPNLKHLGIHQYRGNNVH--PHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQ 334
P L L I GN + P L+ L++S LP L L +
Sbjct: 120 -----PSGLCKLWI---FGNQLTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCK 165
Query: 335 LYFYSM 340
L+ Y+
Sbjct: 166 LWAYNN 171
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 20/128 (15%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
L+ L++ N L L + L+ L S N + +P L+ L
Sbjct: 223 LKELIVSGNR---------LTSLPVLPSELKELMV------SGN-RLTSLPMLPSGLLSL 266
Query: 159 RYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY 218
++ R ++ +LPE+L L + +N+E L E + I +
Sbjct: 267 ---SVYRNQLTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPGYSGPIIRFDM 322
Query: 219 LPAGIERL 226
A R
Sbjct: 323 AGASAPRE 330
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 55/257 (21%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
F S L L +++N ++ V P F+ L LR L + +K IP
Sbjct: 49 QDEFASFPHLEELELNEN-----IVSAVEPGAFNNLFNLRTLGLR-------SNRLKLIP 96
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
+ L +L L++S KI L + +LYNL+ L V L + F L +L
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLE 155
Query: 207 YL-LNRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGN 264
L L + +L +P L L L + I+ +
Sbjct: 156 QLTLEKC--NLTSIPTEALSHLHGLI---------------VLRLRHLNINAI------- 191
Query: 265 EERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP 324
+ + LK L I + + + +L L+++HC N +P
Sbjct: 192 ----------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP 240
Query: 325 P--LGKLPSLEQLYFYS 339
+ L L L
Sbjct: 241 YLAVRHLVYLRFLNLSY 257
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 9e-09
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 18/144 (12%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+ + L L + + + F L L+ L+ S ++ + N
Sbjct: 171 ALSHLHGLIVLRLRHLN-----INAIRDYSFKRLYRLKVLEI------SHWPYLDTMTPN 219
Query: 152 IEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL- 208
++L L+++ + +P + L L+ LN+ + + +L+ L +
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQ 278
Query: 209 LNRGTESLRYLPAGI-ERLTSLRR 231
L G L + L LR
Sbjct: 279 LVGG--QLAVVEPYAFRGLNYLRV 300
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 43/229 (18%), Positives = 73/229 (31%), Gaps = 54/229 (23%)
Query: 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIEKLP 172
V + E L N IK + ++ HL L L+ + +
Sbjct: 23 FVAVPEGIPTETRLLD---------LGKN-RIKTLNQDEFASFPHLEELELNENIVSAVE 72
Query: 173 E-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL-LNRGTESLRYLPAGI-ERLTS 228
L+NL+ L + S + LK +P G F L NL L ++ + L + + L +
Sbjct: 73 PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN--KIVILLDYMFQDLYN 129
Query: 229 LRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHL 288
L+ LE N + + L +L+ L
Sbjct: 130 LK---------------SLEVGDNDLVYI--------------SHRAFSGL---NSLEQL 157
Query: 289 GIHQYRGNNVHPHWMMSLTDLRILTLSH----CINCEHLPPLGKLPSLE 333
+ + ++ + L L +L L H I L +L LE
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 48/207 (23%)
Query: 141 WNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG- 198
+P+ I R L+L + +I+ L + +L+ L + + + G
Sbjct: 19 HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGA 75
Query: 199 FGKLINLMYLL---NRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLI 254
F L NL L NR L+ +P G+ L++L +L+ +N I
Sbjct: 76 FNNLFNLRTLGLRSNR----LKLIPLGVFTGLSNLT---------------KLDISENKI 116
Query: 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314
+LL Q NLK L + + L L LTL
Sbjct: 117 VILLD-----------------YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Query: 315 SHCINCEHLPP--LGKLPSLEQLYFYS 339
C N +P L L L L
Sbjct: 160 EKC-NLTSIPTEALSHLHGLIVLRLRH 185
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
++ + LR L + N ++ + + EL L+ + G + +
Sbjct: 241 YLAVRHLVYLRFLNLSYNP-----ISTIEGSMLHELLRLQEIQLV-------GGQLAVVE 288
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVES 188
L +LR LN+S ++ L E++ + NL+ L ++S
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-10
Identities = 54/246 (21%), Positives = 86/246 (34%), Gaps = 54/246 (21%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNG--FIKEIPKNIEKLV 156
L ++ N L + +FD+LT L L S NG F ++
Sbjct: 30 ATRLELESNK-----LQSLPHGVFDKLTQLTKLSL------SSNGLSFKGCCSQSDFGTT 78
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG--FGKLINLMYL-LNRGT 213
L+YL+LS + + L L+ L+ + LK++ + F L NL+YL ++
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT- 136
Query: 214 ESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKD 272
R GI L+SL L N ++
Sbjct: 137 -HTRVAFNGIFNGLSSLEV--------------------------LKMAG-NSFQENFLP 168
Query: 273 EEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLP 330
+ NL L + Q + + P SL+ L++L +SH N L L
Sbjct: 169 ----DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN 223
Query: 331 SLEQLY 336
SL+ L
Sbjct: 224 SLQVLD 229
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 32/200 (16%), Positives = 56/200 (28%), Gaps = 45/200 (22%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ-DLKELPQG-FGK 201
+ +P I L L K++ LP +L L L++ S K
Sbjct: 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 202 LINLMYL---LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLL 258
+L YL N + + + L L L+ + + + +
Sbjct: 77 TTSLKYLDLSFNG----VITMSSNFLGLEQLE---------------HLDFQHSNLKQMS 117
Query: 259 YFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCI 318
F NL +L I L+ L +L ++
Sbjct: 118 EFS----------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 319 NCEHLPP--LGKLPSLEQLY 336
E+ P +L +L L
Sbjct: 162 FQENFLPDIFTELRNLTFLD 181
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 15/151 (9%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
F S L L + N + +V Q+ L+ LD S N +
Sbjct: 160 NFAELAASSDTLEHLNLQYNF-----IYDVKGQVV--FAKLKTLDL------SSN-KLAF 205
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ-DLKELPQGFGKLINLM 206
+ + + +++L K+ + + L NL+ ++ L F K +
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Query: 207 YLLNRGTESLRYLPAGIERLTSLRRVEKFVV 237
+ + + L + +L +
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 59/259 (22%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN- 151
+ R + + D+ L + L L ++ LD S N + +I
Sbjct: 6 KQNGNRYKIEKVTDSS-----LKQALASLRQSAWNVKELDL------SGNP-LSQISAAD 53
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNR 211
+ L LNLS + + + L L L+ L++ + ++EL ++ L
Sbjct: 54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAA 107
Query: 212 GTESLRYLPAGI-ERLTSLR----RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEE 266
++ + + ++ ++ R + + + L L NE
Sbjct: 108 NN-NISRVSCSRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDL---KLNE- 155
Query: 267 RKRKKDEEVLEALQPP------PNLKHLGIHQYRGNNVH--PHWMMSLTDLRILTLSHCI 318
++ + L+HL + N ++ + L+ L LS
Sbjct: 156 ---------IDTVNFAELAASSDTLEHLNLQ---YNFIYDVKGQ-VVFAKLKTLDLSSN- 201
Query: 319 NCEHLPP-LGKLPSLEQLY 336
+ P + +
Sbjct: 202 KLAFMGPEFQSAAGVTWIS 220
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 29/196 (14%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLIN 204
IK+I + + NL + + T EL ++ + + +K + QG L N
Sbjct: 14 IKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSV-QGIQYLPN 69
Query: 205 LMYLL---NRGTESLRYLPAGIERLTSLRRVEKFVVGR-GVARSSELENKKNLIDLLLYF 260
+ L N+ T+ I+ L +L+ + + V S L++ K L L L
Sbjct: 70 VTKLFLNGNKLTD--------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-- 119
Query: 261 GHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINC 320
N + L P L+ L + + ++ + LT L L+L
Sbjct: 120 -EHNGISD-------INGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QI 168
Query: 321 EHLPPLGKLPSLEQLY 336
+ PL L L+ LY
Sbjct: 169 SDIVPLAGLTKLQNLY 184
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 18/116 (15%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152
++K L L +D+N + ++ +L L++L NG I +I +
Sbjct: 86 LANLKNLGWLFLDENK-----VKDLSS--LKDLKKLKSLSL------EHNG-ISDIN-GL 130
Query: 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL 208
L L L L KI + L L L L++E Q + ++ L L L
Sbjct: 131 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNL 183
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 39/249 (15%), Positives = 85/249 (34%), Gaps = 60/249 (24%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
++ + + ++ +++ + V L + L + N + +I K
Sbjct: 40 VTQNELNSIDQIIANNSD-----IKSVQG--IQYLPNVTKLFL------NGNK-LTDI-K 84
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLN 210
+ L +L +L L K++ L +L +L L+ L++E + ++ G L L L
Sbjct: 85 PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESL-- 139
Query: 211 RGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK 270
YL G ++T + + L L L L N+
Sbjct: 140 -------YL--GNNKITDI---------------TVLSRLTKLDTLSL---EDNQISD-- 170
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC----INCEHLPPL 326
+ L L++L + + +++ + L +L +L L H L
Sbjct: 171 -----IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223
Query: 327 GKLPSLEQL 335
+++
Sbjct: 224 VVPNTVKNT 232
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 46/242 (19%), Positives = 69/242 (28%), Gaps = 82/242 (33%)
Query: 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV-------------HLRY 160
LTE +P + + +W+ + + P +
Sbjct: 23 LTE-MPVEAENVKSKTEYYN------AWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 161 LNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTE------ 214
L L+ L + LPE +L+ L SC L ELP+ L +L+ N
Sbjct: 76 LELNNLGLSSLPE---LPPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131
Query: 215 SLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEE 274
L YL +L L EL+N L + + N
Sbjct: 132 LLEYLGVSNNQLEKL---------------PELQNSSFLKIIDV---DNN---------- 163
Query: 275 VLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQ 334
+LK L P L + + E LP L LP L
Sbjct: 164 ---------SLKKL-----------PD---LPPSLEFIAAGNN-QLEELPELQNLPFLTA 199
Query: 335 LY 336
+Y
Sbjct: 200 IY 201
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 25/138 (18%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
++ L ++ D+N L +L D L ++ N ++E+P
Sbjct: 190 ELQNLPFLTAIYADNN---------SLKKLPDLPLSLESIVA------GNN-ILEELP-E 232
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNR 211
++ L L + ++ LP+ L L + + L +LP+ L L N
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENI 288
Query: 212 GTESLRYLPAGIERLTSL 229
+ L L L
Sbjct: 289 FSG----LSELPPNLYYL 302
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 38/157 (24%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
+ C ++ L +++ G L+ LP+L L L A S N + E+P+
Sbjct: 65 LRDCLDRQAHELELNNLG-----LSS-LPELPPHLESLVA---------SCNS-LTELPE 108
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELY----------------NLQLLNVESCQDLKE 194
+ L L N + + LP L L L++++V++ LK+
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKK 167
Query: 195 LPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231
LP L + N+ L LP ++ L L
Sbjct: 168 LPDLPPSLEFIAAGNNQ----LEELPE-LQNLPFLTA 199
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 31/134 (23%), Positives = 45/134 (33%), Gaps = 27/134 (20%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
+ L L + +N L +L L L A N I+ + +
Sbjct: 277 QSLTFLDVSENIFSG------LSELPPNLYYLNASS---------NE-IRSLC---DLPP 317
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216
L LN+S K+ +LP L+ L L E+P+ L L N L
Sbjct: 318 SLEELNVSNNKLIELPALPP---RLERLIASFNH-LAEVPELPQNLKQLHVEYNP----L 369
Query: 217 RYLPAGIERLTSLR 230
R P E + LR
Sbjct: 370 REFPDIPESVEDLR 383
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
L L + +N L +L L L + + E+P E
Sbjct: 317 PSLEELNVSNNK---------LIELPALPPRLERLIAS-------FNHLAEVP---ELPQ 357
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216
+L+ L++ + + P+ + +L++ + L E+P+ L L N L
Sbjct: 358 NLKQLHVEYNPLREFPDIPESVEDLRMNS-----HLAEVPELPQNLKQLHVETNP----L 408
Query: 217 RYLPAGIERLTSLR 230
R P E + LR
Sbjct: 409 REFPDIPESVEDLR 422
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 32/208 (15%), Positives = 53/208 (25%), Gaps = 81/208 (38%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEK-LPETLCELYNLQLLNVESC------------QD 191
+ E+P E + + + E+ P E + + + C
Sbjct: 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82
Query: 192 LKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKK 251
L LP+ L +L+ N L LP + L SL N
Sbjct: 83 LSSLPELPPHLESLVASCNS----LTELPELPQSLKSLL---------------VDNNNL 123
Query: 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311
+ L PP L++LG+ N +
Sbjct: 124 KALSDL------------------------PPLLEYLGVS---NNQL------------- 143
Query: 312 LTLSHCINCEHLPPLGKLPSLEQLYFYS 339
E LP L L+ + +
Sbjct: 144 ---------EKLPELQNSSFLKIIDVDN 162
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 52/256 (20%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
S +++ L ++D + E+ F ++ L +N I+ +P +
Sbjct: 64 LLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYM------GFN-AIRYLPPH 111
Query: 152 I-EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
+ + + L L L R + LP L L++ + L+ + F +L L
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 170
Query: 209 L---NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
NR L ++ + + SL S L + +L N
Sbjct: 171 QLSSNR----LTHVDLSL--IPSLFH-----ANVSYNLLSTLAIPIAVEELDAS---HNS 216
Query: 266 ERKRKKDEEVLEALQPP--PNLKHLGIHQYRGNN-VHPHWMMSLTDLRILTLSHCINCEH 322
+ ++ P L L + NN W+++ L + LS+ E
Sbjct: 217 ----------INVVRGPVNVELTILKLQ---HNNLTDTAWLLNYPGLVEVDLSYN-ELEK 262
Query: 323 LPP--LGKLPSLEQLY 336
+ K+ LE+LY
Sbjct: 263 IMYHPFVKMQRLERLY 278
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 52/269 (19%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+F ++ L + N + + P +F + L L N + +P
Sbjct: 86 TYAFAYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVL------ERND-LSSLP 133
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
+ I L L++S +E++ +T +LQ L + S + L + L +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHAN 192
Query: 207 YLLNRGTE---------------SLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENK 250
N + S+ + + LT L+ + + ++ L N
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-----LQHNNLTDTAWLLNY 247
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH--PHWMMSLTD 308
L+++ L N K + L+ L I N + + +
Sbjct: 248 PGLVEVDLS---YN--ELEKIMYHPFVKM---QRLERLYIS---NNRLVALNLYGQPIPT 296
Query: 309 LRILTLSHCINCEHLPP-LGKLPSLEQLY 336
L++L LSH + H+ + LE LY
Sbjct: 297 LKVLDLSHN-HLLHVERNQPQFDRLENLY 324
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+ L + + N L +++ F ++ L L S N + +
Sbjct: 243 WLLNYPGLVEVDLSYNE-----LEKIMYHPFVKMQRLERLYI------SNNR-LVALNLY 290
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINL 205
+ + L+ L+LS + + + L+ L ++ + L L NL
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNL 344
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 45/188 (23%)
Query: 155 LVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL--- 209
L + + + + KLP L ++LLN+ Q ++E+ F + L
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF 102
Query: 210 NRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERK 268
N +RYLP + + + L + LE N + L
Sbjct: 103 NA----IRYLPPHVFQNVPLLTVL-------------VLER--NDLSSL----------- 132
Query: 269 RKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGK 328
+ P L L + + + T L+ L LS H+
Sbjct: 133 ---PRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SL 184
Query: 329 LPSLEQLY 336
+PSL
Sbjct: 185 IPSLFHAN 192
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 24/146 (16%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152
F + +LR L ++DN L + +F EL L L + N ++ +P +
Sbjct: 57 FHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLWV------TDNK-LQALPIGV 104
Query: 153 -EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-FGKLINLMYLL 209
++LV+L L L R +++ LP + + L L L++ + L+ LP+G F KL +L L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELR 163
Query: 210 ---NRGTESLRYLPAGI-ERLTSLRR 231
N+ L+ +P G ++LT L+
Sbjct: 164 LYNNQ----LKRVPEGAFDKLTELKT 185
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 50/255 (19%), Positives = 75/255 (29%), Gaps = 58/255 (22%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWN--GFIKEI 148
+ L+SL + N + L L LD S N F
Sbjct: 322 FPTLDLPFLKSLTLTMN-----KGSISFK--KVALPSLSYLDL------SRNALSFSGCC 368
Query: 149 PKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP--QGFGKLINLM 206
+ LR+L+LS + L LQ L+ + LK + F L L+
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLL 427
Query: 207 YLLNRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
YL T + + GI LTSL + + GN
Sbjct: 428 YLDISYT-NTKIDFDGIFLGLTSLNT----------------------LKM-----AGN- 458
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILTLSHC-INCE 321
KD + NL L + + +L L++L +SH +
Sbjct: 459 ---SFKDNTLSNVFANTTNLTFLDL---SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512
Query: 322 HLPPLGKLPSLEQLY 336
+L SL L
Sbjct: 513 DSSHYNQLYSLSTLD 527
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 43/264 (16%), Positives = 83/264 (31%), Gaps = 39/264 (14%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
+ L+ L + N + LP F LT L +D S+N +I+ I
Sbjct: 121 SFPIGQLITLKKLNVAHNF-----IHSCKLPAYFSNLTNLVHVDL------SYN-YIQTI 168
Query: 149 PKNI-----EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG--- 200
N E L++S I+ + + + L L + + + +
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 201 ---KLINLMYLLNRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDL 256
+ L+ + +L I E L + +++F + S ++ L ++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANV 287
Query: 257 -LLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLS 315
+ + + LE + + L I + + L L+ LTL+
Sbjct: 288 SAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLT 336
Query: 316 HCINCEHLPPLGKLPSLEQLYFYS 339
LPSL L
Sbjct: 337 MN-KGSISFKKVALPSLSYLDLSR 359
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 24/152 (15%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIKE 147
+F ++ L+ L + L V F L L LD S+ +
Sbjct: 391 MSANFMGLEELQHLDFQHS-----TLKRVTEFSAFLSLEKLLYLDI------SYTNTKID 439
Query: 148 IPKNIEKLVHLRYLNLS--RLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
L L L ++ K L NL L++ CQ L+++ G F L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHR 498
Query: 205 LMYLL---NRGTESLRYLPAG-IERLTSLRRV 232
L L N L +L + +L SL +
Sbjct: 499 LQLLNMSHNN----LLFLDSSHYNQLYSLSTL 526
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 37/286 (12%), Positives = 69/286 (24%), Gaps = 53/286 (18%)
Query: 85 KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRA----LDFAMFQMWS 140
P F ++ L + + N + + L LD S
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNY-----IQTITVNDLQFLRENPQVNLSLDM------S 189
Query: 141 WNGFIKEIPKNIEKLVHLRYLNLS--RLKIEKLPETLCELYNLQLLN-----VESCQDLK 193
N I I + + L L L + L L L + + ++L+
Sbjct: 190 LN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248
Query: 194 ELPQG-FGKLINLMYLLNRGT--ESLRYLPAGIERLTSLR-------RVEKFVVGRGVAR 243
L ++ R T L ++ ++ +
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308
Query: 244 SSELENKKNLIDLL----------LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293
L + + L N+ + P+L +L + +
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPFLKSLTLTM-NK-------GSISFKKVALPSLSYLDLSRN 360
Query: 294 RGNNVHPH--WMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYF 337
+ + LR L LS L L+ L F
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 29/251 (11%), Positives = 65/251 (25%), Gaps = 53/251 (21%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+ F + + ++ + + + ++L +K+ P
Sbjct: 278 IVKFHCLANVSAMSLAGVS-----IKYLEDVPK--HFKWQSLSI------IRCQ-LKQFP 323
Query: 150 KNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL- 208
L L+ L L+ K + L +L L++ L + L
Sbjct: 324 TL--DLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLR 379
Query: 209 -LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEER 267
L+ + A L L+ ++ ++ + + + F
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLD-------------FQH--STLKRVTEFS------ 418
Query: 268 KRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-- 325
A L +L I + LT L L ++ ++
Sbjct: 419 ----------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 326 LGKLPSLEQLY 336
+L L
Sbjct: 469 FANTTNLTFLD 479
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 85 KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF 144
K F + L L + L ++ +FD L L+ L+ S N
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQ-----LEQISWGVFDTLHRLQLLNM------SHNNL 509
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVES 188
+ + +L L L+ S +IE +L N+ +
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 27/141 (19%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
+++ + N L + F + L+ LD S K L HL
Sbjct: 34 TKNIDLSFNP-----LKILKSYSFSNFSELQWLDL------SRCEIETIEDKAWHGLHHL 82
Query: 159 RYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESL 216
L L+ I+ P + L +L+ L + L L G+LI L L ++
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKL------NV 135
Query: 217 RY-------LPAGIERLTSLR 230
+ LPA LT+L
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLV 156
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 4e-09
Identities = 40/248 (16%), Positives = 79/248 (31%), Gaps = 47/248 (18%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+F L + I N L + +F L L + + I
Sbjct: 49 AFSGFGDLEKIEISQND----VLEVIEADVFSNLPKLHEIR------IEKANNLLYINPE 98
Query: 152 I-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
+ L +L+YL +S I+ LP+ LL+++ ++ + + F L +
Sbjct: 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 209 LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERK 268
L ++ + T L + +N N ++ L +
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELN------------LSDN--NNLEEL----PND---- 196
Query: 269 RKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGK 328
L I + R +++ + + +L LR + N + LP L K
Sbjct: 197 ---------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLPTLEK 244
Query: 329 LPSLEQLY 336
L +L +
Sbjct: 245 LVALMEAS 252
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 28/230 (12%), Positives = 59/230 (25%), Gaps = 21/230 (9%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
F S L L + N + +V Q+ L+ LD S N +
Sbjct: 160 NFAELAASSDTLEHLNLQYNF-----IYDVKGQVV--FAKLKTLDL------SSN-KLAF 205
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ-DLKELPQGFGKLINLM 206
+ + + +++L K+ + + L NL+ ++ L F K +
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Query: 207 YLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEE 266
+ + + L E T + + L G
Sbjct: 266 TVAKQTVKKLTGQN--EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323
Query: 267 RKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316
+ + E + + + + V + L
Sbjct: 324 ETERLECEREN----QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 54/240 (22%)
Query: 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157
R + + D+ L + L L ++ LD S N + ++
Sbjct: 11 RYKIEKVTDSS-----LKQALASLRQSAWNVKELDL------SGNPLSQISAADLAPFTK 59
Query: 158 LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLR 217
L LNLS + + + L L L+ L++ + ++EL ++ L ++
Sbjct: 60 LELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANN-NIS 112
Query: 218 YLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLE 277
+ + + N I +L +
Sbjct: 113 RVSCSR--GQGKK---------------NIYLANNKITML--------------RDLDEG 141
Query: 278 ALQPPPNLKHLGIHQYRGNNVHPHWMMS-LTDLRILTLSHCINCEHLPPLGKLPSLEQLY 336
+++L + + V+ + + L L L + + L+ L
Sbjct: 142 CR---SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLD 197
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/207 (12%), Positives = 61/207 (29%), Gaps = 48/207 (23%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKL 202
I EI +N + + ++ +++ +N++ L++ L ++
Sbjct: 2 IHEIKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPF 57
Query: 203 INLMYL---LNRGTESLRYLPAGIERLTSLRRVE----KFVVGRGVARSSELENKKNLID 255
L L N L +E L++LR ++ EL ++
Sbjct: 58 TKLELLNLSSNV----LYETLD-LESLSTLRTLDLNNNYV---------QELLVGPSIET 103
Query: 256 LLLYFGHGNEERKRKKDEEVLEALQPP--PNLKHLGIHQYRGNNVHPHWMMSLTDLRILT 313
L N + + K++ + + + + ++ L
Sbjct: 104 LHA---ANNN----------ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 314 LSHCINC-EHLPP---LGKLPSLEQLY 336
L N + + +LE L
Sbjct: 151 LKL--NEIDTVNFAELAASSDTLEHLN 175
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 27/141 (19%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-IEKL 155
+ +L +N ++ V + + N I +
Sbjct: 99 PSIETLHAANNN-----ISRVSCSRGQGKKNIYL---------ANNK-ITMLRDLDEGCR 143
Query: 156 VHLRYLNLSRLKIEKLP--ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLL---N 210
++YL+L +I+ + E L+ LN++ + ++ L L N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSN 201
Query: 211 RGTESLRYLPAGIERLTSLRR 231
+ L ++ + +
Sbjct: 202 K----LAFMGPEFQSAAGVTW 218
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-09
Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152
+ S+ L +L++ N + + F L+ L+ L + +
Sbjct: 72 YQSLSHLSTLILTGN-----PIQSLALGAFSGLSSLQKLVA------VETN-LASLENFP 119
Query: 153 -EKLVHLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
L L+ LN++ I+ L NL+ L++ S + ++ + L + L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLL 178
Query: 209 ---LNRGTESLRYLPAGIERLTSLRR 231
L+ + ++ G + L+
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKE 204
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 8e-09
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 19/146 (13%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+ + L SLL+ N L + + F + LR LD S N + + +
Sbjct: 59 TPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPNLRYLDL------SSN-HLHTLDEF 106
Query: 152 I-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
+ L L L L I + ++ LQ L + Q + P L L
Sbjct: 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKL 165
Query: 209 --LNRGTESLRYLPAG-IERLTSLRR 231
L+ + L+ LP +++L + +
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVK 191
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 52/256 (20%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
S +++ L ++D + E+ F ++ L +N I+ +P +
Sbjct: 70 LLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYM------GFN-AIRYLPPH 117
Query: 152 I-EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
+ + + L L L R + LP L L++ + L+ + F +L L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 176
Query: 209 L---NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
NR L ++ + + SL S L + +L N
Sbjct: 177 QLSSNR----LTHVDLSL--IPSLFH-----ANVSYNLLSTLAIPIAVEELDA---SHNS 222
Query: 266 ERKRKKDEEVLEALQPP--PNLKHLGIHQYRGNN-VHPHWMMSLTDLRILTLSHCINCEH 322
+ ++ P L L + NN W+++ L + LS+ E
Sbjct: 223 ----------INVVRGPVNVELTILKLQ---HNNLTDTAWLLNYPGLVEVDLSYN-ELEK 268
Query: 323 LPP--LGKLPSLEQLY 336
+ K+ LE+LY
Sbjct: 269 IMYHPFVKMQRLERLY 284
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 52/269 (19%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+F ++ L + N + + P +F + L L N + +P
Sbjct: 92 TYAFAYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVL------ERN-DLSSLP 139
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
+ I L L++S +E++ +T +LQ L + S + L + L +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHAN 198
Query: 207 YLLNRGTE---------------SLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENK 250
N + S+ + + LT L+ + + ++ L N
Sbjct: 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK-----LQHNNLTDTAWLLNY 253
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH--PHWMMSLTD 308
L+++ L N K + L+ L I N + + +
Sbjct: 254 PGLVEVDLS---YN--ELEKIMYHPFVKM---QRLERLYIS---NNRLVALNLYGQPIPT 302
Query: 309 LRILTLSHCINCEHLPP-LGKLPSLEQLY 336
L++L LSH + H+ + LE LY
Sbjct: 303 LKVLDLSHN-HLLHVERNQPQFDRLENLY 330
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+ L + + N L +++ F ++ L L S N + +
Sbjct: 249 WLLNYPGLVEVDLSYNE-----LEKIMYHPFVKMQRLERLYI------SNNR-LVALNLY 296
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINL 205
+ + L+ L+LS + + + L+ L ++ + L L NL
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 45/188 (23%)
Query: 155 LVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL--- 209
L + + + + KLP L ++LLN+ Q ++E+ F + L
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF 108
Query: 210 NRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERK 268
N +RYLP + + + L + LE N + L
Sbjct: 109 NA----IRYLPPHVFQNVPLLTVL-------------VLER--NDLSSL----------- 138
Query: 269 RKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGK 328
+ P L L + + + T L+ L LS H+
Sbjct: 139 ---PRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SL 190
Query: 329 LPSLEQLY 336
+PSL
Sbjct: 191 IPSLFHAN 198
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 41/253 (16%), Positives = 82/253 (32%), Gaps = 28/253 (11%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIK-EIPK 150
+F + L L + G + L F L L LD S N +
Sbjct: 92 AFQGLFHLFELRLYFCGLSDAVLK---DGYFRNLKALTRLDL------SKNQIRSLYLHP 142
Query: 151 NIEKLVHLRYLNLSRLKIEKLP-ETLCELY--NLQLLNVESCQDLKELPQGFGKLINLMY 207
+ KL L+ ++ S +I + L L L ++ + + +GK +N
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 208 LLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEER 267
+ L L T F +++ L +++ F
Sbjct: 203 NM-----VLEILDVSGNGWTVDIT-GNFSNAISKSQAFSLILAHHIMGAGFGFH-----N 251
Query: 268 KRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-- 325
+ D+ L +++HL + +++ +L DL++L L++ +
Sbjct: 252 IKDPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEA 309
Query: 326 LGKLPSLEQLYFY 338
L +L+ L
Sbjct: 310 FYGLDNLQVLNLS 322
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 44/264 (16%), Positives = 87/264 (32%), Gaps = 47/264 (17%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVH 157
+R L + ++ + ++F+ L L+ L+ ++N I +I L +
Sbjct: 268 VRHLDLSHG-----FVFSLNSRVFETLKDLKVLNL------AYN-KINKIADEAFYGLDN 315
Query: 158 LRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL------- 208
L+ LNLS + +L L + ++++ + + F L L L
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNAL 374
Query: 209 -LNRGTESLRYLPAGIERLTSLRRVE--------KFVVGRGVARSSELENKKNLIDLLLY 259
S+ + +L +L ++ + L +L L+L
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 260 FGHGNEERKRKKDEEVLEALQPPPNLKHL-----GIHQYRGNNVHPHWMMSLTDLRILTL 314
N D+ P+L+ L + + L+ L++L L
Sbjct: 435 ---QNRFSSCSGDQ----TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 315 SHCINCEHLPP--LGKLPSLEQLY 336
+H LPP L +L L
Sbjct: 488 NHN-YLNSLPPGVFSHLTALRGLS 510
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 51/269 (18%), Positives = 97/269 (36%), Gaps = 41/269 (15%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
F ++K L+ L + N + ++ + F L L+ L+ S+N + E+
Sbjct: 283 SRVFETLKDLKVLNLAYNK-----INKIADEAFYGLDNLQVLNL------SYN-LLGELY 330
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ--------DLKELPQGF 199
+ L + Y++L + I + + T L LQ L++ + ++
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 200 GKLINLMYLLNRGTE------SLRYLPAG--IERLTSLRRVE----KFVVGRGVARSSEL 247
KL+ L + L L + R+ L+ + +F G SE
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 248 ENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLT 307
+L L L N + + E + + +L+ L ++ N++ P LT
Sbjct: 451 ---PSLEQLFL---GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504
Query: 308 DLRILTLSHCINCEHLPPLGKLPSLEQLY 336
LR L+L+ L +LE L
Sbjct: 505 ALRGLSLNSN-RLTVLSHNDLPANLEILD 532
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 27/114 (23%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVH 157
LL+ N + V F L L+ L+ I K L +
Sbjct: 26 TERLLLSFNY-----IRTVTASSFPFLEQLQLLEL------GSQYTPLTIDKEAFRNLPN 74
Query: 158 LRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ--DLKELPQGFGKLINLMYL 208
LR L+L KI L L++L L + C D F L L L
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 41/271 (15%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTC--LRALDFAMFQMWSWNGFIKE 147
S + + + + F L +R LD S F+
Sbjct: 233 AFSLILAHHIMGAGFGFHN-----IKDPDQNTFAGLARSSVRHLDL------SHG-FVFS 280
Query: 148 IPKNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
+ + E L L+ LNL+ KI K+ + L NLQ+LN+ L EL F L
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPK 339
Query: 205 LMYLL---NRGTESLRYLPAGI-ERLTSLRRVE----KFVVGRGVARSSEL---ENK-KN 252
+ Y+ N + + + L L+ ++ + ++ NK
Sbjct: 340 VAYIDLQKNH----IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMS-LTDLRI 311
L + L + R ++ ++L L P+L+ L ++Q R ++ S L
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 312 LTLSHC----INCEHLPP--LGKLPSLEQLY 336
L L L L L+ LY
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 41/269 (15%), Positives = 77/269 (28%), Gaps = 41/269 (15%)
Query: 85 KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF 144
+ P F ++ L L + N + + L + L+ ++ S N
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNK-----IQSIYCTDLRVLHQMPLLNLSLDL--SLN-P 188
Query: 145 IKEIPKNIEKLVHLRYLNLS--RLKIEKLPETLCELYNLQLLN-----VESCQDLKELPQ 197
+ I K + L L L + + + L L++ + +L++ +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 198 G-FGKLINLMYL---LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNL 253
L NL L L + LT++ +V + R +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF--SLVSVTIERVKDFSYNFGW 306
Query: 254 IDLLLYFGHGNEERKRKKDEEVLEALQP--PPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311
L L + +LK L +G N + L L
Sbjct: 307 QHLELV---NCK----------FGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEF 351
Query: 312 LTLSH-CINCEHLPP--LGKLPSLEQLYF 337
L LS ++ + SL+ L
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQ-LFDELTCLRALDFAMFQMWSWNGFIKE 147
+F +++L L + L ++ +F L L LD S
Sbjct: 388 MSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSLRNLIYLDI------SHTHTRVA 436
Query: 148 IPKNIEKLVHLRYLNLS--RLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
L L L ++ + LP+ EL NL L++ CQ L++L F L +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS 495
Query: 205 LMYLL---NRGTESLRYLPAG-IERLTSLRRV 232
L L N L + L SL+ +
Sbjct: 496 LQVLNMSHNN----FFSLDTFPYKCLNSLQVL 523
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 45/258 (17%), Positives = 74/258 (28%), Gaps = 59/258 (22%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+ S+KRL +L L LD + F
Sbjct: 321 TLKLKSLKRLTFTSNKGGN----------AFSEVDLPSLEFLDLSRNG----LSFKGCCS 366
Query: 150 KNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
++ L+YL+LS + + L L+ L+ + + F L NL+YL
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 209 L---NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
R GI +L L + GN
Sbjct: 427 DISHTH----TRVAFNGI-----------------------FNGLSSLEVLKM---AGN- 455
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILTLSH-CINCE 321
++ + + NL L + + P SL+ L++L +SH
Sbjct: 456 ---SFQENFLPDIFTELRNLTFLDLS---QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 322 HLPPLGKLPSLEQLYFYS 339
P L SL+ L +
Sbjct: 510 DTFPYKCLNSLQVLDYSL 527
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 47/279 (16%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL-FDELTCLRALDFAMFQMWSWNGFIKE 147
+ ++ L L + EF L + L L L F++ + ++ +
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMY 207
I L ++ +L + IE++ + + Q L + +C+ + L L +
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 208 LLNRGT--------ESLRYL-------------PAGIERLTSLRRVE----KFVVGRGVA 242
N+G SL +L TSL+ ++ +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-----T 387
Query: 243 RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH--- 299
SS + L L + K NL +L I +
Sbjct: 388 MSSNFLGLEQLEHLDF---QHS----NLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAF 437
Query: 300 PHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLY 336
L+ L +L ++ E+ P +L +L L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 37/235 (15%), Positives = 71/235 (30%), Gaps = 59/235 (25%)
Query: 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-P 172
++ L L S+N + L+ L+LSR +I+ +
Sbjct: 19 FYKIPDNLPFSTKNLD---------LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 173 ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232
L +L L + F L +L L T+L +
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL------VAVE--------TNLASL 115
Query: 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP------PNLK 286
E + + + K L +L + +++ + P NL+
Sbjct: 116 E----------NFPIGHLKTLKELNVAHNL-------------IQSFKLPEYFSNLTNLE 152
Query: 287 HLGIHQYRGNNVHPHWMMSLTDLRI----LTLSHC-INCEHLPPLGKLPSLEQLY 336
HL + + +++ + L + + L LS +N P K L +L
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-PGAFKEIRLHKLT 206
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 43/279 (15%), Positives = 86/279 (30%), Gaps = 55/279 (19%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWL-TEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
+++ L +L I++ + + LF+ LT + + I+ +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL------VSVT-IERV 297
Query: 149 PKNIEKLVHLRYLNLSRLKIEKLPE--------------------TLCELYNLQLLNVES 188
+ ++L L K + P + +L +L+ L++
Sbjct: 298 K-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356
Query: 189 CQ--DLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE----KFVVGRGVA 242
Q +L YL + + + L L ++ + ++
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNL---KQMS 412
Query: 243 RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN----V 298
S + +NLI L + R + L +L+ L + GN+
Sbjct: 413 EFSVFLSLRNLIYLDI---SHT--HTRVAFNGIFNGL---SSLEVLKMA---GNSFQENF 461
Query: 299 HPHWMMSLTDLRILTLSHC-INCEHLPPLGKLPSLEQLY 336
P L +L L LS C + L SL+ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
F F + L L + N + LP +F EL L LD S +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNS----FQENFLPDIFTELRNLTFLDL------SQCQLEQLS 486
Query: 149 PKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLI-NLM 206
P L L+ LN+S L L +LQ+L+ + Q +L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546
Query: 207 YL 208
+L
Sbjct: 547 FL 548
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 34/142 (23%)
Query: 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157
L+ L +D+N LT LP+L L + A N + +P E
Sbjct: 121 SLKHLDVDNNQ-----LTM-LPELPALLEYINA---------DNN-QLTMLP---ELPTS 161
Query: 158 LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLL-------N 210
L L++ ++ LPE +L+ L+V + L+ LP + + N
Sbjct: 162 LEVLSVRNNQLTFLPE---LPESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN 217
Query: 211 RGTESLRYLPAGIERLTSLRRV 232
R + ++P I L +
Sbjct: 218 R----ITHIPENILSLDPTCTI 235
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 26/137 (18%)
Query: 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153
C + + L ++ L+ + L ++T L + N + +P+
Sbjct: 56 CLINQFSELQLNRLN-----LSSLPDNLPPQITVLEI---------TQNA-LISLPELPA 100
Query: 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGT 213
L YL+ ++ LPE +L+ L+V++ Q L LP+ L + N+
Sbjct: 101 ---SLEYLDACDNRLSTLPELPA---SLKHLDVDNNQ-LTMLPELPALLEYINADNNQ-- 151
Query: 214 ESLRYLPAGIERLTSLR 230
L LP L L
Sbjct: 152 --LTMLPELPTSLEVLS 166
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 21/135 (15%)
Query: 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154
L L + +N L L + L ALD + ++ +P +
Sbjct: 158 LPTSLEVLSVRNNQ---------LTFLPELPESLEALDVS-------TNLLESLPAVPVR 201
Query: 155 LVHLR----YLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLN 210
H + +I +PE + L + +E L + +
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYH 260
Query: 211 RGTESLRYLPAGIER 225
Sbjct: 261 GPRIYFSMSDGQQNT 275
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 22/117 (18%)
Query: 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154
L + D+N LT LP+L L L + N + +P E
Sbjct: 138 LPALLEYINADNNQ-----LTM-LPELPTSLEVLSVRN---------NQ-LTFLP---EL 178
Query: 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVE---SCQDLKELPQGFGKLINLMYL 208
L L++S +E LP ++ + + + +P+ L +
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 45/260 (17%), Positives = 88/260 (33%), Gaps = 46/260 (17%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVH 157
++SL + +N +T + L+AL + NG I I ++ L
Sbjct: 54 VKSLDLSNN-----RITYISNSDLQRCVNLQALVL------TSNG-INTIEEDSFSSLGS 101
Query: 158 LRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG--FGKLINLMYLLNRGTE 214
L +L+LS + L L +L LN+ K L + F L L L +
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD 160
Query: 215 SLRYLPAGI-ERLTSLR----------RVEKFVVGRGVARSSELENKKNLIDLLLYFGHG 263
+ + LT L E L++ +N+ L+L H
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS----------LKSIQNVSHLIL---HM 207
Query: 264 NE-ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD---LRILTLSHCIN 319
+ + +V +++ L+ + + + + SL R + ++
Sbjct: 208 KQHILLLEIFVDVTSSVECL-ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Query: 320 CEHLPPLGKLPSLEQLYFYS 339
+ + L ++ L +L F
Sbjct: 267 FQVMKLLNQISGLLELEFSR 286
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 40/207 (19%), Positives = 72/207 (34%), Gaps = 30/207 (14%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKL 202
+ IP + ++ L+LS +I + L NLQ L + S + + + F L
Sbjct: 43 LNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSL 99
Query: 203 INLMYL---LNRGTESLRYLPAGI-ERLTSLRRVE----KFVVGRGVARSSELENKKNLI 254
+L +L N L L + + L+SL + + + +S + L
Sbjct: 100 GSLEHLDLSYNY----LSNLSSSWFKPLSSLTFLNLLGNPYKT---LGETSLFSHLTKLQ 152
Query: 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314
L + GN + K + L L+ L I + P + S+ ++ L L
Sbjct: 153 ILRV----GNMDTFTKIQRKDFAGL---TFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Query: 315 SHCINCEHLPP--LGKLPSLEQLYFYS 339
L + S+E L
Sbjct: 206 HMK-QHILLLEIFVDVTSSVECLELRD 231
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFA--MFQMWSWNGFIKE 147
P S S++ + L++ +L D + + L+ + ++
Sbjct: 191 PKSLKSIQNVSHLILHMKQ-----HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245
Query: 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
++ K R + ++ + ++ + L ++ L L Q LK +P G F +L +L
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQ 304
Query: 207 YL 208
+
Sbjct: 305 KI 306
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 24/150 (16%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
+ L+ L + +NG T +P + L +L S+N
Sbjct: 385 LPNLCQNPKNTLQELYLQNNG-----FTGKIPPTLSNCSELVSLHL------SFNYLSGT 433
Query: 148 IPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLINL 205
IP ++ L LR L L +E ++P+ L + L+ L ++ L E+P G NL
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPSGLSNCTNL 492
Query: 206 MYLL---NR--GTESLRYLPAGIERLTSLR 230
++ NR G +P I RL +L
Sbjct: 493 NWISLSNNRLTGE-----IPKWIGRLENLA 517
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 51/258 (19%), Positives = 79/258 (30%), Gaps = 39/258 (15%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
P VK L +L++D N LT +P T L + S N E
Sbjct: 457 EIPQELMYVKTLETLILDFND-----LTGEIPSGLSNCTNLNWISL------SNNRLTGE 505
Query: 148 IPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLINL 205
IPK I +L +L L LS +P L + +L L++ + +P K
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL-NTNLFNGTIPAAMFKQSGK 564
Query: 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
+ N + +G+ RS +L +
Sbjct: 565 I-AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI-RSEQLNRLSTRNPCNI------- 615
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH---PHWMMSLTDLRILTLSHCINCEH 322
R ++ L + N + P + S+ L IL L H N
Sbjct: 616 -TSRVYGGHTSPTFDNNGSMMFLDMS---YNMLSGYIPKEIGSMPYLFILNLGH--N--D 667
Query: 323 L----PP-LGKLPSLEQL 335
+ P +G L L L
Sbjct: 668 ISGSIPDEVGDLRGLNIL 685
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+ I FD + LD S+N IP
Sbjct: 601 SEQLNRLSTRNPCNITSR-----VYGGHTSPTFDNNGSMMFLDM------SYNMLSGYIP 649
Query: 150 KNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMY 207
K I + +L LNL I +P+ + +L L +L++ S L +PQ L L
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL-SSNKLDGRIPQAMSALTMLTE 708
Query: 208 L 208
+
Sbjct: 709 I 709
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 53/281 (18%), Positives = 80/281 (28%), Gaps = 74/281 (26%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIK 146
S S L+ L + N L +L L LD S N
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNT-----LDFPGKVSGGLKLNSLEVLDL------SANSISG 165
Query: 147 EIPKNIE---KLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202
L++L +S KI + + NL+ L+V S +P G
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDC 222
Query: 203 INLMYLLNRGTESLRY------LPAGIERLTSLRRVE----KFVVGRGVARSSEL--ENK 250
L +L + I T L+ + +F +
Sbjct: 223 SALQHL------DISGNKLSGDFSRAISTCTELKLLNISSNQF--------VGPIPPLPL 268
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPP------PNLKHLGIHQYRGNNVH---PH 301
K+L L L N+ P L L + GN+ + P
Sbjct: 269 KSLQYLSLA---ENK----------FTGEIPDFLSGACDTLTGLDLS---GNHFYGAVPP 312
Query: 302 WMMSLTDLRILTLSHC-INCEHLPP--LGKLPSLEQLYFYS 339
+ S + L L LS + E LP L K+ L+ L
Sbjct: 313 FFGSCSLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSF 352
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 51/338 (15%), Positives = 99/338 (29%), Gaps = 90/338 (26%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLF--DELTCLRALDFAMFQMWSWNGFI 145
P ++ S L +L + N + + + L+ L NGF
Sbjct: 360 PESLTNLSAS-LLTLDLSSNN-----FSGPILPNLCQNPKNTLQELYL------QNNGFT 407
Query: 146 KEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLI 203
+IP + L L+LS + +P +L L L+ L + L+ E+PQ +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVK 466
Query: 204 NLMYL-LNR----GTESLRYLPAGIERLTSLRRVE--------KFVVGRGVARSSELENK 250
L L L+ G +P+G+ T+L + + +
Sbjct: 467 TLETLILDFNDLTGE-----IPSGLSNCTNLNWISLSNNRLTGEI--------PKWIGRL 513
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH---PHWMMSLT 307
+NL L L N+ P +
Sbjct: 514 ENLAILKL-----------------------------------SNNSFSGNIPAELGDCR 538
Query: 308 DLRILTLSHCIN--CEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSV 364
L L L+ N +P + K F + + ++ + E + ++
Sbjct: 539 SLIWLDLNT--NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH---GAGNL 593
Query: 365 VAFPKLKTIQFWDMYVLKEWDYGD-TIKGEIMPRLSSL 401
+ F +++ Q + + G P +
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQ-LFDELTCLRALDFAMFQMWSWNGFIK 146
P P L+ L + +N T +P L L LD S N F
Sbjct: 262 PIPPLPLK--SLQYLSLAENK-----FTGEIPDFLSGACDTLTGLDL------SGNHFYG 308
Query: 147 EIPKNIEKLVHLRYLNLSRLKIE-KLP-ETLCELYNLQLLNVESCQDLK-ELPQGFGKL- 202
+P L L LS +LP +TL ++ L++L++ + ELP+ L
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLS 367
Query: 203 INLMYL 208
+L+ L
Sbjct: 368 ASLLTL 373
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 84 GKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNG 143
+ S S+ L SL + ++ + + F L +LD S N
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSH-----INGSVSG-FKCSASLTSLDL------SRNS 111
Query: 144 FIKEIP--KNIEKLVHLRYLNLS--RLKIEKLPETLCELYNLQLLNVESCQDLKELPQGF 199
+ ++ L++LN+S L +L +L++L++ + G+
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
Query: 200 ---GKLINLMYL 208
L +L
Sbjct: 172 VLSDGCGELKHL 183
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 55/277 (19%), Positives = 87/277 (31%), Gaps = 72/277 (25%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
L+ L I N L+ + T L+ L+ S N F+ IP
Sbjct: 218 FLGDCSALQHLDISGNK-----LSGDFSRAISTCTELKLLNI------SSNQFVGPIPP- 265
Query: 152 IEKLVHLRYLNLSRLKIE-KLPETLC-ELYNLQLLNVESCQDLKELPQGFGKLINLMYLL 209
L L+YL+L+ K ++P+ L L L++ +P FG L L
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL- 323
Query: 210 NRGTESLRY------LPAGIERLTSLRRVEKFVVGR----GVARSSELENKKNLIDLLLY 259
+L LP + L +R ++ + G S +L+ L L
Sbjct: 324 -----ALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 260 FGH---------GNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH---PHWMMSLT 307
+ P L+ L + N P + + +
Sbjct: 377 SNNFSGPILPNLCQ---------------NPKNTLQELYLQ---NNGFTGKIPPTLSNCS 418
Query: 308 DLRILTLSHCINCEHL----PP-LGKLPSLEQLYFYS 339
+L L LS N +L P LG L L L +
Sbjct: 419 ELVSLHLSF--N--YLSGTIPSSLGSLSKLRDLKLWL 451
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 61/277 (22%), Positives = 97/277 (35%), Gaps = 71/277 (25%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIK 146
P F S L SL + N + LP ++ L+ LD S+N F
Sbjct: 309 AVPPFFGSCSLLESLALSSNN-----FSGELPMDTLLKMRGLKVLDL------SFNEFSG 357
Query: 147 EIPKNIEKL-VHLRYLNLSRLKIE-KLPETLCE--LYNLQLLNVESCQDLK-ELPQGFGK 201
E+P+++ L L L+LS + LC+ LQ L +++ ++P
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIPPTLSN 416
Query: 202 LINLMYLLNRGTESLRY------LPAGIERLTSLRRVE----KFVVGRGVARS----SEL 247
L+ L L + +P+ + L+ LR ++ EL
Sbjct: 417 CSELVSL------HLSFNYLSGTIPSSLGSLSKLRDLKLWLNML--------EGEIPQEL 462
Query: 248 ENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP-----PNLKHLGIHQYRGNNVH--- 299
K L L+L N+ L P NL + + N +
Sbjct: 463 MYVKTLETLIL---DFND----------LTGEIPSGLSNCTNLNWISL---SNNRLTGEI 506
Query: 300 PHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQL 335
P W+ L +L IL LS+ ++P LG SL L
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 48/352 (13%), Positives = 103/352 (29%), Gaps = 96/352 (27%)
Query: 20 RRSFFQEFVKND----DD----EIL-----SCKM----HDIVHDFAQFLSKNECFTVEID 62
RR + +N + + SCK+ FLS + +D
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATTTHISLD 292
Query: 63 GREEPFIDS-----LGQNVRHSMVKL----GKGAPFPISFCSVKRLRSLLIDDNGDDEFW 113
L + + L P +S + + D + W
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNW 347
Query: 114 -------LTEVLPQLFDELTC--LRAL--DFAMFQ----------MWSWNGFIKEIPKNI 152
LT ++ + L R + ++F W IK +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 153 EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNR 211
+H L +EK P E+ + ++ L ++ L + +++ Y + +
Sbjct: 408 VNKLHKYSL------VEKQPKESTISIPSIYLELKVKLENEYALHR---SIVD-HYNIPK 457
Query: 212 GTESLRYLPAGIER---------LTSLRRVEKFVVGR----------------GVARSSE 246
+S +P +++ L ++ E+ + R A ++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 247 LENKKNLIDLLLYFGH--GNEERKRKKDEEVLEAL-QPPPNL---KHLGIHQ 292
L L Y + N+ + + +L+ L + NL K+ + +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 9e-04
Identities = 44/313 (14%), Positives = 89/313 (28%), Gaps = 104/313 (33%)
Query: 7 IDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGREE 66
+ +I E D +A ++ V D K+ I+ L E
Sbjct: 330 LSIIAESIRDGLATWDNWKH-VNCD-------KLTTIIESSLNVLEPAE----------- 370
Query: 67 PFIDSLGQNVRHSMVKLG---KGAPFPISFCSVKRLRSLLIDDNGDDEFW--LTEVLPQL 121
R +L A P L + W + + +
Sbjct: 371 ---------YRKMFDRLSVFPPSAHIPT-----ILLSLI----------WFDVIKSDVMV 406
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE---TLCEL 178
+L +++ PK + YL L ++K+E ++ +
Sbjct: 407 VVNKLHKYSL-------------VEKQPKESTISIPSIYLEL-KVKLENEYALHRSIVDH 452
Query: 179 YNLQ------------------------LLNVESCQDLKELPQGFGKLINLMYLLN--RG 212
YN+ L N+E + + F ++ +L R
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRH 509
Query: 213 TESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEER-KRK 270
+ I L L+ + ++ ++ + ++ L++ +L F EE
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYI------CDNDPKYER-LVNAILDFLPKIEENLICS 562
Query: 271 KDEEVLE-ALQPP 282
K ++L AL
Sbjct: 563 KYTDLLRIALMAE 575
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+ R+ +L + +P L L L N + IP
Sbjct: 43 CDTDTQTYRVNNLDLSGLN---LPKPYPIPSSLANLPYLNFLYIG-----GINNLVGPIP 94
Query: 150 KNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL 208
I KL L YL ++ + +P+ L ++ L L+ LP L NL+ +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 209 L---NR--GTESLRYLPAGIERLTSLRRV 232
NR G +P + L
Sbjct: 155 TFDGNRISGA-----IPDSYGSFSKLFTS 178
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 34/154 (22%)
Query: 94 CSVKRLRS-----------LLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWN 142
C + L + L + +N L T L L+ ++
Sbjct: 17 CDKRNLTALPPDLPKDTTILHLSENL-----LYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 143 GFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGK 201
L L L+LS +++ LP L L +L+V + L LP G
Sbjct: 72 VD--------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRG 122
Query: 202 LINLMYLL---NRGTESLRYLPAGI-ERLTSLRR 231
L L L N L+ LP G+ L +
Sbjct: 123 LGELQELYLKGNE----LKTLPPGLLTPTPKLEK 152
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 41/259 (15%), Positives = 77/259 (29%), Gaps = 34/259 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELTCLRALDFAMFQMWSWNGFIKEI 148
+K L+ L + N + LP+ F LT L LD S N
Sbjct: 117 NFPIGHLKTLKELNVAHNL-----IQSFKLPEYFSNLTNLEHLDL------SSNKIQSIY 165
Query: 149 PKNIEKLVHLRY----LNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFG---- 200
++ L + L+LS + + + L L + + D + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 201 --KLINLMYLLNRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL 257
++ L+ R +L E L +L E + ++ L ++
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 258 LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317
+ + ++ +HL + + L L+ LT +
Sbjct: 286 SFSLVSVTIER-------VKDFSYNFGWQHL---ELVNCKFGQFPTLKLKSLKRLTFTS- 334
Query: 318 INCEHLPPLGKLPSLEQLY 336
+ LPSLE L
Sbjct: 335 NKGGNAFSEVDLPSLEFLD 353
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 64/261 (24%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNG--FIKEI 148
+K L+ L N +L L LD S NG F
Sbjct: 319 FPTLKLKSLKRLTFTSNK-----GGNAFS--EVDLPSLEFLDL------SRNGLSFKGCC 365
Query: 149 PKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG--FGKLINLM 206
++ L+YL+LS + + L L+ L+ + LK++ + F L NL+
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLI 424
Query: 207 YLLNRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNE 265
YL T R GI L+SL ++ + GN
Sbjct: 425 YLDISHTH-TRVAFNGIFNGLSSLE----------------------VLKM-----AGN- 455
Query: 266 ERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN----VHPHWMMSLTDLRILTLSHCINC- 320
++ + + NL L + + P SL+ L++L ++ N
Sbjct: 456 ---SFQENFLPDIFTELRNLTFLDLS----QCQLEQLSPTAFNSLSSLQVLNMAS--NQL 506
Query: 321 EHLPP--LGKLPSLEQLYFYS 339
+ +P +L SL++++ ++
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHT 527
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE 147
F S++ L L I +F+ L+ L L + N F +
Sbjct: 412 SEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFNGLSSLEVLKM------AGNSFQEN 460
Query: 148 IPKNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLIN 204
+I +L +L +L+LS+ ++E+L L +LQ+LN+ S Q LK +P G F +L +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTS 519
Query: 205 LMYL 208
L +
Sbjct: 520 LQKI 523
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 36/264 (13%), Positives = 71/264 (26%), Gaps = 56/264 (21%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWS----------- 140
+ + L D + + LF+ LT + + +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDD--IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307
Query: 141 ----WNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ--DLKE 194
N + P KL L+ L + K + +L +L+ L++
Sbjct: 308 HLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGC 364
Query: 195 LPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254
Q +L YL + + + + L L L+ + + +
Sbjct: 365 CSQSDFGTTSLKYL-DLSFNGVITMSSNFLGLEQLEH---------------LDFQHSNL 408
Query: 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314
+ F NL +L I L+ L +L +
Sbjct: 409 KQMSEFS----------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 315 SHCINCEHLPP--LGKLPSLEQLY 336
+ E+ P +L +L L
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLD 476
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 27/113 (23%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-IEKLVH 157
++L + N L + F L+ LD S I+ I + L H
Sbjct: 30 TKNLDLSFNP-----LRHLGSYSFFSFPELQVLDL------SRCE-IQTIEDGAYQSLSH 77
Query: 158 LRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
L L L+ I+ L L +LQ L L L G L L L
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL 129
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 56/203 (27%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQG-FGKL 202
+IP N+ + L+LS + L LQ+L++ C+ ++ + G + L
Sbjct: 19 FYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSL 75
Query: 203 INLMYLL---NRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLL 258
+L L+ N ++ L G L+SL+ +L + + L
Sbjct: 76 SHLSTLILTGNP----IQSLALGAFSGLSSLQ---------------KLVAVETNLASL- 115
Query: 259 YFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH----PHWMMSLTDLRILTL 314
+ + L LK L + N + P + +LT+L L L
Sbjct: 116 -------------ENFPIGHL---KTLKELNVA---HNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 315 SH----CINCEHLPPLGKLPSLE 333
S I C L L ++P L
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLN 179
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 8e-08
Identities = 39/250 (15%), Positives = 82/250 (32%), Gaps = 57/250 (22%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
++ + + +L G +T + L L L+ N I ++
Sbjct: 34 TVTQADLDGITTLSAFGTG-----VTTIEG--VQYLNNLIGLEL------KDNQ-ITDLA 79
Query: 150 KNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLL 209
++ L + L LS ++ + + L +++ L++ S Q + ++ L NL L
Sbjct: 80 -PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVL- 134
Query: 210 NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKR 269
L ++T++ S L NL L + +
Sbjct: 135 -----YLDLN-----QITNI---------------SPLAGLTNLQYLSIG---NAQVSD- 165
Query: 270 KKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKL 329
L L L L + +++ P + SL +L + L + + PL
Sbjct: 166 ------LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN-QISDVSPLANT 216
Query: 330 PSLEQLYFYS 339
+L + +
Sbjct: 217 SNLFIVTLTN 226
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 36/167 (21%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFA------------MFQ-- 137
+ L +N LT+ + + LT L L M
Sbjct: 319 CPSKISPFLHLDFSNN-----LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 138 ------MWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ 190
S N + K L LN+S + C +++L++ S +
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNK 432
Query: 191 DLKELPQGFGKLINLMYLL---NRGTESLRYLPAGI-ERLTSLRRVE 233
+K +P+ KL L L N+ L+ +P GI +RLTSL+++
Sbjct: 433 -IKSIPKQVVKLEALQELNVASNQ----LKSVPDGIFDRLTSLQKIW 474
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 16/197 (8%)
Query: 140 SWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG 198
S N + +I L LR L +S +I+ L ++ + L+ L++ + L ++
Sbjct: 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS-- 85
Query: 199 FGKLINLMYLLNRGTESLRYLPAG--IERLTSLRRVEKFVVGRGVARSSELENKKNLIDL 256
+NL + L+ + LP ++ L+ + + S + +L
Sbjct: 86 CHPTVNLKH-LDLSFNAFDALPICKEFGNMSQLKFLG---LSTTHLEKSSVLPIAHLNIS 141
Query: 257 LLYFGHGNEERKRKKDEEVLEALQ--PPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314
+ G + +E E LQ +L + + + + ++ +L + +
Sbjct: 142 KVLLVLGETYGE----KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 315 SHCINCEHLPPLGKLPS 331
+ + +
Sbjct: 198 KCVLEDNKCSYFLSILA 214
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 21/172 (12%), Positives = 45/172 (26%), Gaps = 29/172 (16%)
Query: 10 IGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDGREEPFI 69
E+ +S + + + +HD+ DF + C ++ ++
Sbjct: 410 EVEDILQEFVNKSLLF---CDRNGKSFRYYLHDLQVDFLT---EKNCSQLQDLHKKIITQ 463
Query: 70 DSLGQNVRHSMVKLGKGAPFP-------ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLF 122
+ S K L +L+ + W+
Sbjct: 464 FQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLD-----WIKAKT---- 514
Query: 123 DELTCLRAL--DFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172
EL L +F ++ + ++ E LN L + P
Sbjct: 515 -ELVGPAHLIHEFVEYR----HILDEKDCAVSENFQEFLSLNGHLLGRQPFP 561
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-07
Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 60/249 (24%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
++ + + ++ +++ + V L + L + N + +I K
Sbjct: 37 VTQNELNSIDQIIANNSD-----IKSVQG--IQYLPNVTKLFL------NGNK-LTDI-K 81
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLN 210
+ L +L +L L KI+ L +L +L L+ L++E + ++ G L L L
Sbjct: 82 PLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESL-- 136
Query: 211 RGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK 270
YL G ++T + + L L L L N+
Sbjct: 137 -------YL--GNNKITDI---------------TVLSRLTKLDTLSL---EDNQISD-- 167
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC----INCEHLPPL 326
+ L L++L + + +++ + L +L +L L H L
Sbjct: 168 -----IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220
Query: 327 GKLPSLEQL 335
+++
Sbjct: 221 VVPNTVKNT 229
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 17/144 (11%), Positives = 46/144 (31%), Gaps = 14/144 (9%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+F ++ + + + + L ++ F L+ + ++ + I +
Sbjct: 50 AFSNLPNISRIYVSIDVT----LQQLESHSFYNLSKVTHIEI------RNTRNLTYIDPD 99
Query: 152 I-EKLVHLRYLNLSRLKIEKLPET--LCELYNLQLLNVESCQDLKELPQG-FGKLINLMY 207
++L L++L + ++ P+ + +L + + +P F L N
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159
Query: 208 LLNRGTESLRYLPAGIERLTSLRR 231
L + T L
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTKLDA 183
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 19/212 (8%)
Query: 127 CLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNV 186
+ + + + ++ L LS K L L LQ L
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP 379
Query: 187 ESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSE 246
E+ L + L L+Y E+L+Y + ++ + +R + +
Sbjct: 380 ENKWCLLTIILLMRALDPLLYE----KETLQYF-STLKAVDPMRAAYLDDLRSKFLLENS 434
Query: 247 LENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH--PHWMM 304
+ + +L+ H KD VL L+ + HL + N + P +
Sbjct: 435 VLKMEYADVRVLHLAH--------KDLTVLCHLEQLLLVTHLDLS---HNRLRALPPALA 483
Query: 305 SLTDLRILTLSHCINCEHLPPLGKLPSLEQLY 336
+L L +L S E++ + LP L++L
Sbjct: 484 ALRCLEVLQASDN-ALENVDGVANLPRLQELL 514
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 23/147 (15%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+F + L L + DN L V P F L L L G ++E+
Sbjct: 75 AFTGLALLEQLDLSDNAQ----LRSVDPATFHGLGRLHTLHL------DRCG-LQELGPG 123
Query: 152 I-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL 208
+ L L+YL L ++ LP+ T +L NL L + + + +P+ F L +L L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRL 182
Query: 209 L---NRGTESLRYLPAGI-ERLTSLRR 231
L NR + ++ L L
Sbjct: 183 LLHQNR----VAHVHPHAFRDLGRLMT 205
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 39/204 (19%), Positives = 63/204 (30%), Gaps = 46/204 (22%)
Query: 145 IKEIPKNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGK 201
I +P +L L L + ++ L L+ L++ L+ + F
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Query: 202 LINLMYLL---NRGTESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL 257
L L L L+ L G+ L +L+ L + N + L
Sbjct: 104 LGRLHTLHLDRCG----LQELGPGLFRGLAALQ---------------YLYLQDNALQAL 144
Query: 258 LYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317
++ L NL HL +H R ++V L L L L
Sbjct: 145 --------------PDDTFRDL---GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 318 INCEHLPP--LGKLPSLEQLYFYS 339
H+ P L L LY ++
Sbjct: 188 -RVAHVHPHAFRDLGRLMTLYLFA 210
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLC-ELYNLQLLNVESCQDLKELPQG-F 199
N K P + L++L+ L L ++ LP + L L +L++ + Q L LP F
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVF 108
Query: 200 GKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231
+L++L L L LP GIERLT L
Sbjct: 109 DRLVHLKE-LFMCCNKLTELPRGIERLTHLTH 139
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
P F S+ L+ L + N L + +FD LT L LD Q + +P
Sbjct: 57 PGVFDSLINLKELYLGSNQ-----LGALPVGVFDSLTQLTVLDLGTNQ-------LTVLP 104
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINL-- 205
+ ++LVHL+ L + K+ +LP + L +L L ++ Q LK +P G F +L +L
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTH 163
Query: 206 MYLLN 210
YL
Sbjct: 164 AYLFG 168
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 25/130 (19%)
Query: 93 FCSVKRL----------RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWN 142
C + L + + N + E+ F L L+ L
Sbjct: 16 ICINRGLHQVPELPAHVNYVDLSLNS-----IAELNETSFSRLQDLQFLKV------EQQ 64
Query: 143 GFIKEIPKNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ-DLKELPQG- 198
I N L L L L + +L L NL++L + C D L
Sbjct: 65 TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124
Query: 199 FGKLINLMYL 208
F L +L L
Sbjct: 125 FKPLTSLEML 134
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 12/145 (8%)
Query: 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI- 152
+ +++SL++ ++ + + D T + I + K++
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295
Query: 153 EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL- 209
L L L++ +I K+ + L +L LN+ L + F L L L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDL 354
Query: 210 --NRGTESLRYLPAGI-ERLTSLRR 231
N +R L L +L+
Sbjct: 355 SYNH----IRALGDQSFLGLPNLKE 375
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
+F + L L + N L + ++F+ L L LD S+N I+ +
Sbjct: 318 AFWGLTHLLKLNLSQNF-----LGSIDSRMFENLDKLEVLDL------SYNH-IRALGDQ 365
Query: 152 I-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVE------SCQDLKELPQ 197
L +L+ L L +++ +P+ L +LQ + + SC + L +
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 46/230 (20%)
Query: 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151
F + ++ + + N + F + L + A I IP+
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIE---NGAFQGMKKLSYIRIAD------TN-ITTIPQG 189
Query: 152 IEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL- 208
+ L L+L KI K+ +L L NL L + + + G +L L
Sbjct: 190 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELH 246
Query: 209 LNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERK 268
LN L +P G+ ++ +Y + N
Sbjct: 247 LNNN--KLVKVPGGLADHKYIQV--------------------------VYLHNNNISAI 278
Query: 269 RKKDEEVLEALQPPPNLKHLGIH--QYRGNNVHPHWMMSLTDLRILTLSH 316
D + + + + + P + + L +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 36/258 (13%), Positives = 80/258 (31%), Gaps = 65/258 (25%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPKNI-EK 154
K L+ L + +N +T+V +F+ L + ++ N I +
Sbjct: 121 KTLQELRVHENE-----ITKVRKSVFNGLNQMIVVEL------GTNPLKSSGIENGAFQG 169
Query: 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL---N 210
+ L Y+ ++ I +P+ L +L L+++ + + ++ L NL L N
Sbjct: 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN 226
Query: 211 RGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK 270
+ + G L N +L +L L + N
Sbjct: 227 S----ISAVDNGS-----------------------LANTPHLRELHL---NNN------ 250
Query: 271 KDEEVLEALQPPPNLKHLGIHQ------YRGNNVHPHWMMSLTDLRILTLSH-CINCEHL 323
K +V L ++ + +H + P + ++L + +
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310
Query: 324 PP--LGKLPSLEQLYFYS 339
P + + +
Sbjct: 311 QPSTFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 52/261 (19%), Positives = 93/261 (35%), Gaps = 62/261 (23%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVH 157
L + +N +TE+ F L L L N I +I LV
Sbjct: 54 TALLDLQNNK-----ITEIKDGDFKNLKNLHTLIL------INNK-ISKISPGAFAPLVK 101
Query: 158 LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL---NRGT 213
L L LS+ ++++LPE + LQ L V + + ++ + F L ++ + N
Sbjct: 102 LERLYLSKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 214 ESLRYLPAGI-ERLTSLRRVEKFVVGRGVARSSELENKK----------NLIDLLLYFGH 262
S + G + + L + + + +L +L L
Sbjct: 159 SS--GIENGAFQGMKKLSYI-------------RIADTNITTIPQGLPPSLTELHL---D 200
Query: 263 GNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN---VHPHWMMSLTDLRILTLSHCIN 319
GN + K D L+ L NL LG+ N+ V + + LR L L++
Sbjct: 201 GN--KITKVDAASLKGL---NNLAKLGLS---FNSISAVDNGSLANTPHLRELHLNNN-K 251
Query: 320 CEHLPP-LGKLPSLEQLYFYS 339
+P L ++ +Y ++
Sbjct: 252 LVKVPGGLADHKYIQVVYLHN 272
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
P +F K+LR + + +N ++E+ P F L L +L + I E+P
Sbjct: 49 PGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLNSLVLYGNK-------ITELP 96
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLM 206
K++ E L L+ L L+ KI L +L+NL LL++ + L+ + +G F L +
Sbjct: 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQ 155
Query: 207 YL 208
+
Sbjct: 156 TM 157
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149
+F + +L L +D N L + +FD+LT L L A Q + +P
Sbjct: 52 DATFRGLTKLTWLNLDYN-----QLQTLSAGVFDDLTELGTLGLANNQ-------LASLP 99
Query: 150 KNI-EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-FGKLINLM 206
+ + L L L L +++ LP + + L L+ L + + Q L+ +P G F KL NL
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQ 158
Query: 207 YLLNRGTESLRYLPAGI-ERLTSLRRV 232
L+ T L+ +P G +RL L+ +
Sbjct: 159 T-LSLSTNQLQSVPHGAFDRLGKLQTI 184
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-F 199
G L L +LNL +++ L +L L L + + Q L LP G F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVF 103
Query: 200 GKLINLMYLLNRGTESLRYLPAGI-ERLTSLRR 231
L L L G L+ LP+G+ +RLT L+
Sbjct: 104 DHLTQLDK-LYLGGNQLKSLPSGVFDRLTKLKE 135
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNECFTVEIDG 63
+++D + +++R +L+ K+ I+H F + + + I
Sbjct: 423 EEQLDDEVADRLKRLSKRGALL---SGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISI 479
Query: 64 REEPFIDSLGQNV----RHSMVKLGK 85
E+ ++ NV RH K
Sbjct: 480 LEQRLLEIGNNNVSVPERHIPSHFQK 505
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 42/168 (25%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152
S L N T+ + Q L L+ L NG +K K
Sbjct: 349 PPSPSSFTFLNFTQNV-----FTDSVFQGCSTLKRLQTLIL------QRNG-LKNFFKVA 396
Query: 153 EKLVHLRYLNLSRLKIEKLP-----------ETLCELY----------------NLQLLN 185
++ L + + L E++ L +++L+
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456
Query: 186 VESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGI-ERLTSLRRV 232
+ + + + +P+ L L LN + L+ +P G+ +RLTSL+ +
Sbjct: 457 LHNNR-IMSIPKDVTHLQALQE-LNVASNQLKSVPDGVFDRLTSLQYI 502
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 44/192 (22%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLIN 204
I ++ L + NL + + L + EL +Q N ++ ++ L G N
Sbjct: 9 INQV-FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSN-IQSL-AGMQFFTN 64
Query: 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGN 264
L L + I L+ L ++ L +L + + N
Sbjct: 65 LKELHLSHNQ--------ISDLSPL------------------KDLTKLEELSV---NRN 95
Query: 265 EERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP 324
R K+ + + L L + + ++ L +L IL++ + + +
Sbjct: 96 ----RLKNLNGIPSA----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNN-KLKSIV 144
Query: 325 PLGKLPSLEQLY 336
LG L LE L
Sbjct: 145 MLGFLSKLEVLD 156
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 61/243 (25%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
+ +T+++ Q EL+ ++ + + I+ + ++
Sbjct: 19 ANAVKQNLGKQS-----VTDLVSQ--KELSGVQNFNG------DNSN-IQSL-AGMQFFT 63
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216
+L+ L+LS +I L L +L L+ L+V + LK L + + L
Sbjct: 64 NLKELHLSHNQISDL-SPLKDLTKLEELSVNRNR-LKNLN----GIPSA---------CL 108
Query: 217 RYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVL 276
L L L + KNL L + N+ + +
Sbjct: 109 SRLFLDNNELRDT---------------DSLIHLKNLEILSI---RNNKLKS-------I 143
Query: 277 EALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC----INCEHLPPLGKLPSL 332
L L+ L +H N + L + + L+ ++ P L ++
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201
Query: 333 EQL 335
+
Sbjct: 202 KDP 204
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 27/196 (13%), Positives = 57/196 (29%), Gaps = 42/196 (21%)
Query: 145 IKEIP-KNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203
IP + ++ L + + T ++ +L + + + + +L G
Sbjct: 14 NVNIPDSTFKAYLNG---LLGQSSTANI--TEAQMNSLTYITLANIN-VTDL-TGIEYAH 66
Query: 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHG 263
N+ L T+ + + NL L + G
Sbjct: 67 NIKDLTINNI-----------HATNY---------------NPISGLSNLERLRIM---G 97
Query: 264 NEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHL 323
+ + L +L L I ++ + +L + + LS+ +
Sbjct: 98 K-----DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 324 PPLGKLPSLEQLYFYS 339
PL LP L+ L
Sbjct: 153 MPLKTLPELKSLNIQF 168
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 15/113 (13%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
++ L I++ T P L+ L L + N+ L
Sbjct: 66 HNIKDLTINNIH-----ATNYNP--ISGLSNLERLRI------MGKDVTSDKIPNLSGLT 112
Query: 157 HLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL 208
L L++S + + + L + +++ + ++ L L L
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSL 164
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 45/192 (23%)
Query: 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ--DLKELPQGFGKLINLMYLL 209
++ L Y+ L+ + + L + +N++ L + + + + L NL L
Sbjct: 40 EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPI----SGLSNLERLR 94
Query: 210 NRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKR 269
G + + LTSL L+ + D
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLT---------------LLDISHSAHD-------------- 125
Query: 270 KKDEEVLEALQPPPNLKHLGIHQYRGNNV--HPHWMMSLTDLRILTLSHCINCEHLPPLG 327
+ +L + P + + + N + +L +L+ L + +
Sbjct: 126 ---DSILTKINTLPKVNSIDLS---YNGAITDIMPLKTLPELKSLNIQFD-GVHDYRGIE 178
Query: 328 KLPSLEQLYFYS 339
P L QLY +S
Sbjct: 179 DFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
L L I + + + + L + ++D S+NG I +I ++ L
Sbjct: 112 TSLTLLDISHSA-----HDDSILTKINTLPKVNSIDL------SYNGAITDI-MPLKTLP 159
Query: 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ 190
L+ LN+ + + + L L S
Sbjct: 160 ELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 45/228 (19%), Positives = 67/228 (29%), Gaps = 54/228 (23%)
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNL 181
++L L +LD + I ++ IEKL L L + I L L + NL
Sbjct: 38 EEQLATLTSLDC------HNSS-ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNL 87
Query: 182 QLLNVESCQDLKELPQGFGKLINLMYLL---NRGTE-------SLRYLPAGIERLTSLRR 231
L +S + L L L L YL N+ T+ L YL LT +
Sbjct: 88 TYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-- 142
Query: 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIH 291
++ + L +L + + P L L
Sbjct: 143 --------------DVSHNTQLTELDCHLNKKIT----------KLDVTPQTQLTTLDCS 178
Query: 292 QYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYS 339
N + + L L N L L + L L S
Sbjct: 179 ---FNKITELDVSQNKLLNRLNCDTN-NITKL-DLNQNIQLTFLDCSS 221
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 42/249 (16%), Positives = 62/249 (24%), Gaps = 63/249 (25%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
I +L L N L T L LD + I E+
Sbjct: 142 IDVSHNTQLTELDCHLNK-----KITKLD--VTPQTQLTTLDCS-------FNKITELD- 186
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLN 210
+ + L LN I KL L + L L+ S + L E+ L L Y
Sbjct: 187 -VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYF-- 238
Query: 211 RGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK 270
LT L ++ L L +
Sbjct: 239 ----DCSVN-----PLTEL----------------DVSTLSKLTTLHCI---QTD----- 265
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLP 330
L + N + + + + T L +L L L + P
Sbjct: 266 -----LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA-GITELD-LSQNP 318
Query: 331 SLEQLYFYS 339
L LY +
Sbjct: 319 KLVYLYLNN 327
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 77/253 (30%)
Query: 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150
+ K L L D N +T+ L ++ L LD S N + EI
Sbjct: 185 LDVSQNKLLNRLNCDTNN-----ITK-LD--LNQNIQLTFLDC------SSNK-LTEID- 228
Query: 151 NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLN 210
+ L L Y + S + +L + L L+ L E+ L+Y
Sbjct: 229 -VTPLTQLTYFDCSVNPLTELDVSTLS--KLTTLHCIQTD-LLEID--LTHNTQLIYFQA 282
Query: 211 RGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK 270
G ++ L + T L L+ + I L
Sbjct: 283 EGCRKIKELD--VTHNTQLY---------------LLDCQAAGITEL------------- 312
Query: 271 KDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI--LTLSHCINCEH-----L 323
L P L +L ++ N LT+L + T ++C +
Sbjct: 313 -------DLSQNPKLVYLYLN----NT-------ELTELDVSHNTKLKSLSCVNAHIQDF 354
Query: 324 PPLGKLPSLEQLY 336
+GK+P+L +
Sbjct: 355 SSVGKIPALNNNF 367
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 54/244 (22%)
Query: 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKLVHLRYLNLSRLKIEKLP 172
++E+ F L L AL N I +I + L L+ L +S+ + ++P
Sbjct: 66 ISELRKDDFKGLQHLYALVL------VNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 173 ETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYL-----------LNRGT---ESLR 217
L +L L + + ++++P+G F L N+ + G L
Sbjct: 119 PNL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 218 YLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLIDLLLYFGHGNEERKRKKDEEVL 276
YL +LT + + + + +EL N I + + E L
Sbjct: 176 YLRISEAKLTG--------IPKDLPETLNELHLDHNKIQAI--------------ELEDL 213
Query: 277 EALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQL 335
L LG+ + + + L LR L L + +P L L L+ +
Sbjct: 214 LRY---SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVV 269
Query: 336 YFYS 339
Y ++
Sbjct: 270 YLHT 273
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI-EKL 155
+ L L +D N + + + + L L N I+ I L
Sbjct: 193 ETLNELHLDHNK-----IQAIELEDLLRYSKLYRLGL------GHNQ-IRMIENGSLSFL 240
Query: 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLN 210
LR L+L K+ ++P L +L LQ++ + + + ++ F + +
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAY 295
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 38/258 (14%), Positives = 74/258 (28%), Gaps = 70/258 (27%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE-IPKNIEKL 155
L L I DN + +V +F L + ++ N
Sbjct: 123 SSLVELRIHDN-----RIRKVPKGVFSGLRNMNCIEM------GGNPLENSGFEPGAFDG 171
Query: 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL---NR 211
+ L YL +S K+ +P+ L L L+++ + ++ + + L L N+
Sbjct: 172 LKLNYLRISEAKLTGIPKDL--PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 212 GTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKK 271
+R + G L L +L L N K
Sbjct: 229 ----IRMIENGS-----------------------LSFLPTLRELHL---DNN------K 252
Query: 272 DEEVLEALQPPPNLKHLGIHQYRGNNV---------HPHWMMSLTDLRILTLSH-CINCE 321
V L L+ + +H NN+ + + ++L + +
Sbjct: 253 LSRVPAGLPDLKLLQVVYLH---TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309
Query: 322 HLPP--LGKLPSLEQLYF 337
+ P + + F
Sbjct: 310 EVQPATFRCVTDRLAIQF 327
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 39/205 (19%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKL 202
+K +PK I L+L I +L + L +L L + + + + ++ + F L
Sbjct: 45 LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPL 101
Query: 203 INLMYLL---NRGTESLRYLPAGI-ERLTSLR----RVEKFVVGRGVARSSELENKKNLI 254
L L N L +P + L LR R+ K +N+
Sbjct: 102 RKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIRKV-------PKGVFSGLRNMN 150
Query: 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314
+ + GN + + L L +L I + + + L L L
Sbjct: 151 CIEM---GGNPLENSGFEPGAFDGL----KLNYLRISEAKLTGIPKD---LPETLNELHL 200
Query: 315 SHCINC-EHLPP--LGKLPSLEQLY 336
H N + + L + L +L
Sbjct: 201 DH--NKIQAIELEDLLRYSKLYRLG 223
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLC-ELYNLQLLNVESCQDLKELPQG-F 199
N ++L L L L K++ LP + +L +L LN+ + Q L+ LP G F
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF 96
Query: 200 GKLINLMYLLNRGTESLRYLPAGI-ERLTSLRR 231
KL L L T L+ LP G+ ++LT L+
Sbjct: 97 DKLTQLKE-LALNTNQLQSLPDGVFDKLTQLKD 128
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 20/142 (14%)
Query: 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152
+ L L++ N L + +FD+LT L+ L Q ++ +P +
Sbjct: 81 LKELTNLTYLILTGNQ-----LQSLPNGVFDKLTNLKELVLVENQ-------LQSLPDGV 128
Query: 153 -EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-FGKLINLMYL- 208
+KL +L YLNL+ +++ LP+ + + L NL L++ Q L+ LP+G F KL L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLR 187
Query: 209 LNRGTESLRYLPAGI-ERLTSL 229
L L+ +P G+ +RLTSL
Sbjct: 188 LY--QNQLKSVPDGVFDRLTSL 207
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPETLC-ELYNLQLLNVESCQDLKELPQG-FGKL 202
+PK + HL ++LS +I L + L L + + L+ +P F L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGL 101
Query: 203 INLMYL-LNRGTESLRYLPAGI-ERLTSL 229
+L L L+ + +P G L++L
Sbjct: 102 KSLRLLSLH--GNDISVVPEGAFNDLSAL 128
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ--DLKELPQGFGKL 202
I+++ + L ++L LS IEK+ +L + NL++L++ ++ L L
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTL 95
Query: 203 INLMYLLNRGTESLRYLPAGIERLTSLRR 231
L ++ SL GIE+L +LR
Sbjct: 96 EEL-WISYNQIASLS----GIEKLVNLRV 119
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 154 KLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLL-- 209
KL LR +N S KI + E + + + S + L+ + F L +L L+
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLR 113
Query: 210 -NRGTESLRYLPAGI-ERLTSLRR 231
NR + + L+S+R
Sbjct: 114 SNR----ITCVGNDSFIGLSSVRL 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 19/139 (13%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
+R L++D+ ++ + L E L L N + + N+ KL L
Sbjct: 26 VRELVLDNCKSND----GKIEGLTAEFVNLEFLSL-------INVGLISV-SNLPKLPKL 73
Query: 159 RYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQ--DLKELPQGFGKLINLMYLLNRG--- 212
+ L LS +I + L E L NL LN+ + D+ L + KL L L
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEV 132
Query: 213 TESLRYLPAGIERLTSLRR 231
T Y + + L L
Sbjct: 133 TNLNDYRESVFKLLPQLTY 151
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
++ L++D++ +E L L DE L L N + I N+ KL L
Sbjct: 19 VKELVLDNSRSNE----GKLEGLTDEFEELEFLST-------INVGLTSI-ANLPKLNKL 66
Query: 159 RYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQ--DLKELPQGFGKLINLMYL 208
+ L LS ++ E L E NL LN+ + DL + + KL NL L
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSL 118
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 153 EKLVHLRYLNLSRLKIEKLPETLCE-LYNLQLLNVESCQDLKELPQG-FGKLINLMYL-L 209
+L HL L L R ++ + E ++Q L + + +KE+ F L L L L
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNL 109
Query: 210 NRGTESLRYLPAGI-ERLTSL 229
+ + G E L SL
Sbjct: 110 Y--DNQISCVMPGSFEHLNSL 128
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 154 KLVHLRYLNLSRLKIEKLPETLC-ELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNR 211
KL L L+LS+ +I+ LP+ + +L L +L + + L+ LP G F KL L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKE-LAL 107
Query: 212 GTESLRYLPAGI-ERLTSL 229
T L+ +P GI +RLTSL
Sbjct: 108 DTNQLKSVPDGIFDRLTSL 126
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 62/357 (17%), Positives = 124/357 (34%), Gaps = 43/357 (12%)
Query: 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156
+++++LL++++ E + L +L T L L+F F K PK++E +
Sbjct: 164 RKIKTLLMEESSFSE-KDGKWLHELAQHNTSLEVLNF------YMTEFAKISPKDLETIA 216
Query: 157 H----LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRG 212
L + + +I +L NL+ S + +P+ + L+ L G
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276
Query: 213 TESL--RYLPAGIERLTSLRRVE-KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKR 269
+ +P +R+++ + + + ++ NL L G
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG------ 330
Query: 270 KKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC--------INCE 321
D + Q LK L I + ++ ++ L+ +
Sbjct: 331 --DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388
Query: 322 H-----LPPLGK-LPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQF 375
L +G L +L + +R+ D L D+G S ++ KL+ F
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPL----DNG-VRSLLIGCKKLRRFAF 443
Query: 376 WDMYVLKEWDYGDTIKGEIMPRLSSLCIARCP-TLRALPDHLLQTTTLQKLEIWGCP 431
+ D G + G+ P + + + + L + LQKLE+ GC
Sbjct: 444 YLRQGGLT-DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 15/124 (12%)
Query: 88 PFPISFCSVK--RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI 145
+ C +K L+ L + + G + + V L L+ LD S N
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMET--PSGVCSALAAARVQLQGLDL------SHNSLR 241
Query: 146 KEIPK-NIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLIN 204
+ + L LNLS ++++P+ L L +L++ + L P +L
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQ 297
Query: 205 LMYL 208
+ L
Sbjct: 298 VGNL 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.95 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.95 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.95 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.94 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.94 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.94 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.94 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.93 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.93 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.92 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.9 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.89 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.88 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.88 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.88 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.88 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.87 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.87 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.86 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.86 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.86 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.85 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.84 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.84 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.83 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.83 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.83 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.83 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.82 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.82 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.8 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.79 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.79 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.79 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.78 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.78 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.78 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.76 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.76 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.76 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.75 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.75 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.74 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.73 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.73 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.72 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.72 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.71 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.71 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.7 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.69 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.69 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.68 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.67 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.66 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.65 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.64 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.63 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.59 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.58 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.58 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.58 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.55 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.54 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.54 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.54 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.53 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.49 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.49 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.48 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.48 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.47 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.47 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.43 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.43 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.41 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.41 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.4 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.34 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.34 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.32 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.32 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.31 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.3 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.24 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.21 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.15 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.15 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.14 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.08 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.04 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.98 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.98 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.94 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.93 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.92 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.87 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.75 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.65 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.61 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.6 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.58 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.54 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.46 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.45 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.34 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.27 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.17 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.08 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.06 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.02 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.87 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.84 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.06 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.73 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.3 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.81 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 89.15 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=271.85 Aligned_cols=259 Identities=23% Similarity=0.269 Sum_probs=182.0
Q ss_pred CCceeEEEEEcCCCC-CcCcccCCC-CCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGA-PFPISFCSV-KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
..+++.+.+..+... .+|..+... ++|+.|++++|. +.+..|..+..+++|++|++++ |.+.+.+|.
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~L~~------n~l~~~ip~ 336 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-----FYGAVPPFFGSCSLLESLALSS------NNFSGELPM 336 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-----EEECCCGGGGGCTTCCEEECCS------SEEEEECCH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-----CCCccchHHhcCCCccEEECCC------CcccCcCCH
Confidence 456777777666553 556655553 777777777765 4556666677777777777777 554445554
Q ss_pred c-cccccccceeecCCCCCc-cCChhHhhcc-C--------------------------CcEeecCCCCcccccchhhhh
Q 044264 151 N-IEKLVHLRYLNLSRLKIE-KLPETLCELY-N--------------------------LQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 151 ~-~~~l~~L~~L~L~~~~~~-~lp~~i~~l~-~--------------------------L~~L~l~~~~~~~~l~~~i~~ 201 (439)
. +..+++|++|++++|.++ .+|..+.+++ + |++|++++|.....+|..+++
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 4 666666777777666654 5565555554 4 445555555433356666777
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCC
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 281 (439)
+++|++|++++|......|..++.+++|+.|++..|...+..+..+..+++|+.|++++|.. ...++..+..
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l--------~~~~p~~l~~ 488 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSN 488 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--------CSCCCGGGGG
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc--------cCcCCHHHhc
Confidence 77777777777776666777777777777777777777777777777888888888877742 2234566778
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCcc
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEF 350 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~ 350 (439)
+++|++|++++|.....+|.++..+++|+.|++++|.+...+|. ++.+++|+.|++++|.....+|..+
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 88999999999988866688888999999999999988777775 8888999999999888665666543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=246.05 Aligned_cols=339 Identities=16% Similarity=0.119 Sum_probs=251.6
Q ss_pred EeeCCCCCccccccCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHh-hhhhHhhhcCCceeEEeCCcc
Q 044264 59 VEIDGREEPFIDSLGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLT-EVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 136 (439)
+++.......++.....++++.+.++....+ |..+.++++|++|++++|. +. ...+..|..+++|++|++++
T Consensus 15 ~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~- 88 (455)
T 3v47_A 15 AICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDY- 88 (455)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTT-
T ss_pred cCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCC-
Confidence 3444445555555678899999999988776 6778999999999999987 33 33466789999999999999
Q ss_pred ccccccccccccccccccccccceeecCCCCCcc-CChh--HhhccCCcEeecCCCCcccccchh-hhhccccceeeccC
Q 044264 137 QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPET--LCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRG 212 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~ 212 (439)
|.+....|..+..+++|++|++++|.++. +|.. ++.+++|++|++++|......|.. +.++++|++|++++
T Consensus 89 -----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 89 -----NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp -----CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred -----CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 77555568889999999999999999874 4444 889999999999999844444655 78999999999999
Q ss_pred ccccccCCcccccC--cccccccceeeccccccccc--------cccccCcceeeecccCCcchhccCChHHHHHh----
Q 044264 213 TESLRYLPAGIERL--TSLRRVEKFVVGRGVARSSE--------LENKKNLIDLLLYFGHGNEERKRKKDEEVLEA---- 278 (439)
Q Consensus 213 ~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---- 278 (439)
|......|..+..+ .+|+.|++..+......... +..+++|+.|+++++...... ...+...
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~~~~~~ 239 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM----AKRFFDAIAGT 239 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH----HHHHHHHTTTC
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc----hhhhhcccccc
Confidence 98766666666655 56777777666554322221 334567777777776422100 0011110
Q ss_pred -----------------------------C--CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-C
Q 044264 279 -----------------------------L--QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-L 326 (439)
Q Consensus 279 -----------------------------l--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~ 326 (439)
+ ...++|++|++++|......|..+..+++|+.|++++|......+. +
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 0 0136899999999988887688888999999999999988776664 8
Q ss_pred CCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeeccc
Q 044264 327 GKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARC 406 (439)
Q Consensus 327 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c 406 (439)
+.+++|+.|++++|. +..++... +..+++|++|+++++. ++.+.. .....+++|++|++++|
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~-------------~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRM-------------FENLDKLEVLDLSYNH-IRALGD---QSFLGLPNLKELALDTN 381 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGG-------------GTTCTTCCEEECCSSC-CCEECT---TTTTTCTTCCEEECCSS
T ss_pred cCcccCCEEECCCCc-cCCcChhH-------------hcCcccCCEEECCCCc-ccccCh---hhccccccccEEECCCC
Confidence 899999999999997 45554322 5668999999999973 444321 22356899999999998
Q ss_pred ccccCCCCC-CCCCCCccEEEEcCCc
Q 044264 407 PTLRALPDH-LLQTTTLQKLEIWGCP 431 (439)
Q Consensus 407 ~~l~~l~~~-l~~~~~L~~L~i~~c~ 431 (439)
.++.+|.. +..+++|+.|++++|+
T Consensus 382 -~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 382 -QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccccCCHhHhccCCcccEEEccCCC
Confidence 67777654 5789999999998875
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=267.93 Aligned_cols=321 Identities=18% Similarity=0.112 Sum_probs=248.6
Q ss_pred CceeEEEEEcCCCC-CcCcccCCCCCeeEEEecCCCCChhhHhhhhhHh-hhcCCceeEEeCCcccccccccccccccc-
Q 044264 74 QNVRHSMVKLGKGA-PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQL-FDELTCLRALDFAMFQMWSWNGFIKEIPK- 150 (439)
Q Consensus 74 ~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 150 (439)
.+++.+.+..+... .+|..+..+++|+.|++.+|. +.+.+|.. +..+++|++|++++ |.+.+.+|.
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~ip~~~l~~l~~L~~L~Ls~------n~l~~~~p~~ 362 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-----FSGELPMDTLLKMRGLKVLDLSF------NEFSGELPES 362 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-----EEEECCHHHHTTCTTCCEEECCS------SEEEECCCTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-----ccCcCCHHHHhcCCCCCEEeCcC------CccCccccHH
Confidence 66778877777664 567777778888888888775 44344433 67777777777777 433323333
Q ss_pred ------------------------cccc--ccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 151 ------------------------NIEK--LVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 151 ------------------------~~~~--l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+.. +++|++|++++|.++ .+|..++++++|++|++++|.....+|..++.++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 3333 556777777777765 7788999999999999999986668899999999
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|+.|++++|.....+|..+..+++|+.|++.+|...+..+..+..+++|+.|++++|.. ...++..+..++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--------~~~~p~~~~~l~ 514 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--------TGEIPKWIGRLE 514 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--------CSCCCGGGGGCT
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc--------CCcCChHHhcCC
Confidence 999999999998778999999999999999999999888999999999999999999852 234567788899
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC--------------------------------------
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-------------------------------------- 325 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------------------------- 325 (439)
+|++|++++|.....+|..+..+++|+.|++++|.+...+|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 999999999999876699999999999999999877654442
Q ss_pred ---------------------------------CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcce
Q 044264 326 ---------------------------------LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKT 372 (439)
Q Consensus 326 ---------------------------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 372 (439)
++.+++|+.|++++|.....+|.. +..++.|+.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--------------l~~l~~L~~ 660 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--------------IGSMPYLFI 660 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--------------GGGCTTCCE
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--------------HhccccCCE
Confidence 233466777777777644444433 667888999
Q ss_pred eeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 373 IQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 373 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
|+++++.--..++ ...+.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 661 L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 661 LNLGHNDISGSIP----DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EeCcCCccCCCCC----hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9998874222232 233678899999999996556888888899999999999884
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=255.24 Aligned_cols=330 Identities=13% Similarity=0.123 Sum_probs=232.9
Q ss_pred CCceeEEEEEcCCCCC------------------cCcccC--CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEe
Q 044264 73 GQNVRHSMVKLGKGAP------------------FPISFC--SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALD 132 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 132 (439)
..+++.+.+..+.... +|..+. ++++|++|++++|. +.+.+|..+..+++|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCCTTTTTCSSCCEEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccChHHHhcCCCCCEEE
Confidence 5788999999888877 899888 99999999999987 6778888899999999999
Q ss_pred CCccccccccc-ccc-ccccccccc------cccceeecCCCCCccCCh--hHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 133 FAMFQMWSWNG-FIK-EIPKNIEKL------VHLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 133 l~~~~~~~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
+++ |. +.+ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.....+| .++.+
T Consensus 280 Ls~------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 280 VAC------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CTT------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CcC------CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 998 66 555 677777766 899999999999889998 89999999999999998444888 78889
Q ss_pred cccceeeccCccccccCCcccccCcc-cccccceeecccccccccccccc--CcceeeecccCCcchhccCChHHHHHhC
Q 044264 203 INLMYLLNRGTESLRYLPAGIERLTS-LRRVEKFVVGRGVARSSELENKK--NLIDLLLYFGHGNEERKRKKDEEVLEAL 279 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~l 279 (439)
++|++|++++|.. ..+|..+..+++ |++|++++|... .++..+..++ +|+.|++++|.. ....+..+
T Consensus 353 ~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l--------~~~~p~~l 422 (636)
T 4eco_A 353 IKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI--------GSVDGKNF 422 (636)
T ss_dssp EEESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT--------TTTTTCSS
T ss_pred CCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC--------CCcchhhh
Confidence 9999999998875 478888888888 999998888776 6666666554 788888887742 12233444
Q ss_pred C-------CCCCccEEEEeeccCCccCCchh-hcccCccEEeecCCCCCCcCCC--CC-------CcCCcCeeeeccccC
Q 044264 280 Q-------PPPNLKHLGIHQYRGNNVHPHWM-MSLTDLRILTLSHCINCEHLPP--LG-------KLPSLEQLYFYSMGS 342 (439)
Q Consensus 280 ~-------~~~~L~~L~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~-------~l~~L~~L~l~~~~~ 342 (439)
. .+++|++|++++|.+..+ |..+ ..+++|+.|++++|.+. .+|. +. ++++|+.|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~- 499 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK- 499 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-
T ss_pred cccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-
Confidence 4 556778888877777765 5443 35777777777777665 4442 21 22377777777776
Q ss_pred eeEeCCccc--cccC----------CCCCCCCCCcCCCCcceeeccCCCCccc--cccCCCcccccCcccceeeeccccc
Q 044264 343 VKRVGDEFL--GVES----------DHGRASSSVVAFPKLKTIQFWDMYVLKE--WDYGDTIKGEIMPRLSSLCIARCPT 408 (439)
Q Consensus 343 l~~~~~~~~--~~~~----------~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~p~L~~L~i~~c~~ 408 (439)
+..++..+. .... ... .+..+..+++|+.|+++++..+.. +....+.....+++|++|++++| .
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~ 577 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-D 577 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-C
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-c
Confidence 335554432 1100 111 233355567777777754331111 11111112245778888888887 4
Q ss_pred ccCCCCCCCCCCCccEEEEcCCc
Q 044264 409 LRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 409 l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
++.+|..+. ++|+.|++++|+
T Consensus 578 l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 578 IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCBCCSCCC--TTCCEEECCSCT
T ss_pred CCccCHhHh--CcCCEEECcCCC
Confidence 477776654 788888888885
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=255.54 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=232.7
Q ss_pred CCceeEEEEEcCCCCC------------------cCcccC--CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEe
Q 044264 73 GQNVRHSMVKLGKGAP------------------FPISFC--SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALD 132 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 132 (439)
..+++.+.+..+.... +|..+. ++++|+.|++++|. +.+.+|..+..+++|+.|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhCCCCCCEEE
Confidence 5789999999998877 898887 99999999999987 6778888899999999999
Q ss_pred CCccccccccc-ccc-cccccccccc-------ccceeecCCCCCccCCh--hHhhccCCcEeecCCCCcccccchhhhh
Q 044264 133 FAMFQMWSWNG-FIK-EIPKNIEKLV-------HLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 133 l~~~~~~~~~~-~~~-~~~~~~~~l~-------~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+++ |. +.+ .+|..+..+. +|++|++++|.++.+|. .++++++|++|++++|. +..+| .++.
T Consensus 522 Ls~------N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~ 593 (876)
T 4ecn_A 522 IAC------NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT 593 (876)
T ss_dssp CTT------CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT
T ss_pred CcC------CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcC
Confidence 999 65 444 5776666555 99999999999999998 89999999999999998 55888 7899
Q ss_pred ccccceeeccCccccccCCcccccCcc-cccccceeeccccccccccccccC--cceeeecccCCcchhccCChHHHHHh
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTS-LRRVEKFVVGRGVARSSELENKKN--LIDLLLYFGHGNEERKRKKDEEVLEA 278 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~ 278 (439)
+++|+.|++++|... .+|..+..+++ |+.|+++.|... .++..+..++. |+.|++++|.... ....++..
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g-----~ip~l~~~ 666 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-----EGRNISCS 666 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT-----TSSSCSSC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC-----ccccchhh
Confidence 999999999999854 88888999998 999999998876 66666666654 8888888874221 00011111
Q ss_pred CC--CCCCccEEEEeeccCCccCCchhh-cccCccEEeecCCCCCCcCCC--CC-------CcCCcCeeeeccccCeeEe
Q 044264 279 LQ--PPPNLKHLGIHQYRGNNVHPHWMM-SLTDLRILTLSHCINCEHLPP--LG-------KLPSLEQLYFYSMGSVKRV 346 (439)
Q Consensus 279 l~--~~~~L~~L~l~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~-------~l~~L~~L~l~~~~~l~~~ 346 (439)
+. ..++|+.|++++|.+..+ |..+. .+++|+.|++++|.+. .+|. +. ++++|+.|++++|. +..+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC
T ss_pred hccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccc
Confidence 12 234777777777777755 55443 6677777777777655 3332 11 23377777777775 4455
Q ss_pred CCccc--cccC----------CCCCCCCCCcCCCCcceeeccCCCCccc--cccCCCcccccCcccceeeecccccccCC
Q 044264 347 GDEFL--GVES----------DHGRASSSVVAFPKLKTIQFWDMYVLKE--WDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 347 ~~~~~--~~~~----------~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+..+. .... ..+ .+..+..+++|+.|++++++.+.. +....+.....+++|++|++++| .++.+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCcc
Confidence 54332 1100 011 233355667777777765432111 11111112345778888888888 44777
Q ss_pred CCCCCCCCCccEEEEcCCc
Q 044264 413 PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c~ 431 (439)
|..+. ++|+.|+|++|+
T Consensus 822 p~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CSCCC--SSSCEEECCSCT
T ss_pred CHhhc--CCCCEEECCCCC
Confidence 77654 688888888886
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=255.39 Aligned_cols=312 Identities=13% Similarity=0.136 Sum_probs=245.3
Q ss_pred cCcccCCCCCeeEEEecCCCCChhhHhhh-----------------hhHhhh--cCCceeEEeCCccccccccccccccc
Q 044264 89 FPISFCSVKRLRSLLIDDNGDDEFWLTEV-----------------LPQLFD--ELTCLRALDFAMFQMWSWNGFIKEIP 149 (439)
Q Consensus 89 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (439)
+|..+.++++|++|++++|. +.+. +|..+. .+++|++|++++ |.+.+.+|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~------n~l~~~~p 266 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN------CPNLTKLP 266 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC------CTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecC------CcCCccCh
Confidence 78889999999999999998 4443 888888 999999999999 87788899
Q ss_pred cccccccccceeecCCCC-Cc--cCChhHhhc------cCCcEeecCCCCcccccch--hhhhccccceeeccCcccccc
Q 044264 150 KNIEKLVHLRYLNLSRLK-IE--KLPETLCEL------YNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRY 218 (439)
Q Consensus 150 ~~~~~l~~L~~L~L~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~ 218 (439)
..+.++++|++|++++|. ++ .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|.....
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 999999999999999998 87 599999887 999999999998 569998 899999999999999997668
Q ss_pred CCcccccCcccccccceeeccccccccccccccC-cceeeecccCCcchhccCChHHHHHhCCCCC--CccEEEEeeccC
Q 044264 219 LPAGIERLTSLRRVEKFVVGRGVARSSELENKKN-LIDLLLYFGHGNEERKRKKDEEVLEALQPPP--NLKHLGIHQYRG 295 (439)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~ 295 (439)
+| .++.+++|+.|++++|... .++..+..+++ |+.|++++|. ...++..+...+ +|++|++++|.+
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~---------l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK---------LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC---------CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc---------CcccchhhhhcccCccCEEECcCCcC
Confidence 88 8999999999999998877 77888999999 9999999984 224455555544 899999999999
Q ss_pred CccCCchhh-------cccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCcccccc------------
Q 044264 296 NNVHPHWMM-------SLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVE------------ 354 (439)
Q Consensus 296 ~~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~------------ 354 (439)
....|..+. .+++|+.|++++|.+. .+|. +..+++|+.|++++|. +..++.......
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccE
Confidence 886677777 7789999999999887 5554 5678999999999998 446665443211
Q ss_pred ------CCCCCCCCCCc--CCCCcceeeccCCCCccccccCCCcccccCcccceeeecc------cccccCCCCCCCCCC
Q 044264 355 ------SDHGRASSSVV--AFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR------CPTLRALPDHLLQTT 420 (439)
Q Consensus 355 ------~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~------c~~l~~l~~~l~~~~ 420 (439)
... ..+..+. .+++|+.|+++++. ++.++. ....+++|+.|++++ |.....+|..+..++
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcCh----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 011 1222333 66677777776652 333221 224567777777743 333456677777777
Q ss_pred CccEEEEcCCc
Q 044264 421 TLQKLEIWGCP 431 (439)
Q Consensus 421 ~L~~L~i~~c~ 431 (439)
+|+.|++++|.
T Consensus 567 ~L~~L~Ls~N~ 577 (636)
T 4eco_A 567 SLTQLQIGSND 577 (636)
T ss_dssp SCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 77777777774
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=242.00 Aligned_cols=313 Identities=18% Similarity=0.149 Sum_probs=213.5
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ +.+....|..+..+++
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNR-----IKTLNQDEFASFPHLEELELNE------NIVSAVEPGAFNNLFN 81 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECTT------SCCCEECTTTTTTCTT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCc-----cceECHhHccCCCCCCEEECCC------CccCEeChhhhhCCcc
Confidence 34444555566666543 577888888876 5555566777888888888887 6644445667778888
Q ss_pred cceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|++|+|++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++..
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 88888888887777753 57788888888888874444456677888888888888775554556677788888888887
Q ss_pred eccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 237 VGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|.........+..+++|+.|+++++.... .....+..+++|++|+++++.....++.......+|+.|++++
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINA--------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCE--------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcE--------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 77766555667778888888887764221 1123566777888888887766554455555566788888888
Q ss_pred CCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCccccc
Q 044264 317 CINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI 394 (439)
Q Consensus 317 ~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (439)
|... .++ .+..+++|+.|++++|. +..++... +..+++|++|+++++. +..+.. .....
T Consensus 234 n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------~~~l~~L~~L~L~~n~-l~~~~~---~~~~~ 294 (477)
T 2id5_A 234 CNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-------------LHELLRLQEIQLVGGQ-LAVVEP---YAFRG 294 (477)
T ss_dssp SCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTTS-------------CTTCTTCCEEECCSSC-CSEECT---TTBTT
T ss_pred Cccc-ccCHHHhcCccccCeeECCCCc-CCccChhh-------------ccccccCCEEECCCCc-cceECH---HHhcC
Confidence 7655 344 26777888888888777 44444322 4557788888887762 333321 12245
Q ss_pred CcccceeeecccccccCCCC-CCCCCCCccEEEEcCCc
Q 044264 395 MPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 395 ~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~~c~ 431 (439)
+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 678888888887 6666654 34667888888887765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=258.17 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=173.9
Q ss_pred hhHhhhcCCceeEEeCCcccccccccccc-----------------ccccccc--cccccceeecCCCC-CccCChhHhh
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIK-----------------EIPKNIE--KLVHLRYLNLSRLK-IEKLPETLCE 177 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~-~~~lp~~i~~ 177 (439)
+|..+..+++|++|+|++ |.+.+ .+|..++ .+++|++|+|++|. .+.+|..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFAN------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEES------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred hhHHHhcCCCCCEEECcC------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 555667777777777777 55333 2666665 77777777777776 4566767777
Q ss_pred ccCCcEeecCCCC-ccc-ccchhhhhcc-------ccceeeccCccccccCCc--ccccCcccccccceeeccccccccc
Q 044264 178 LYNLQLLNVESCQ-DLK-ELPQGFGKLI-------NLMYLLNRGTESLRYLPA--GIERLTSLRRVEKFVVGRGVARSSE 246 (439)
Q Consensus 178 l~~L~~L~l~~~~-~~~-~l~~~i~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~ 246 (439)
+++|++|++++|. ... .+|..++.++ +|++|++++|... .+|. .++.+++|+.|+++.|... .++ .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 7777777777775 333 4666666665 7777777777643 6666 6677777777777766655 444 6
Q ss_pred cccccCcceeeecccCCcchhccCChHHHHHhCCCCCC-ccEEEEeeccCCccCCchhhccc--CccEEeecCCCCCCcC
Q 044264 247 LENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPN-LKHLGIHQYRGNNVHPHWMMSLT--DLRILTLSHCINCEHL 323 (439)
Q Consensus 247 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~l~~~~~~~~--~L~~L~l~~~~~~~~~ 323 (439)
++.+++|+.|++++|. ...++..+..+++ |+.|++++|.+..+ |..+...+ +|+.|++++|.+...+
T Consensus 591 ~~~L~~L~~L~Ls~N~---------l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQ---------IEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCTTSEESEEECCSSC---------CSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred hcCCCcceEEECcCCc---------cccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCcc
Confidence 6677777777776663 1234445556666 77777766666643 55554333 3666666666554433
Q ss_pred CCCC------CcCCcCeeeeccccCeeEeCCcccc-----------ccCCCCCCCCC-------CcCCCCcceeeccCCC
Q 044264 324 PPLG------KLPSLEQLYFYSMGSVKRVGDEFLG-----------VESDHGRASSS-------VVAFPKLKTIQFWDMY 379 (439)
Q Consensus 324 ~~~~------~l~~L~~L~l~~~~~l~~~~~~~~~-----------~~~~~~~~~~~-------~~~l~~L~~L~l~~~~ 379 (439)
|.+. .+++|+.|++++|. +..++..+.. .+......... ...+++|+.|++++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-
T ss_pred ccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-
Confidence 3211 22355555555554 2233322110 00000000000 123448888888887
Q ss_pred CccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 380 VLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 380 ~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
.++.++... ....+|+|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 739 ~L~~lp~~l--~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 739 KLTSLSDDF--RATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCCCCCGGG--STTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCccchHHh--hhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 454443211 0126789999999998 666788888889999999998754
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=246.56 Aligned_cols=347 Identities=14% Similarity=0.035 Sum_probs=194.0
Q ss_pred eeCCCCCccccc-cCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccc
Q 044264 60 EIDGREEPFIDS-LGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQ 137 (439)
Q Consensus 60 ~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 137 (439)
++.+.....++. ....++.+.+.++....+ |..+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 18 ~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~-- 90 (606)
T 3t6q_A 18 NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTA-- 90 (606)
T ss_dssp ECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTT--
T ss_pred ECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-----cceeChhhccCccccCeeeCCC--
Confidence 333333333333 456677787777777666 4567777888888888776 4556666777778888888877
Q ss_pred cccccccccccccccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCccccc--chhhhhccccceeeccCcc
Q 044264 138 MWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l--~~~i~~l~~L~~L~l~~~~ 214 (439)
|.+....|..+..+++|++|++++|.++.+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|.
T Consensus 91 ----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 91 ----NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNA 164 (606)
T ss_dssp ----CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSC
T ss_pred ----CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCc
Confidence 654444566677777777777777776665 3456667777777777766 3332 33 3336666666666665
Q ss_pred ccccCCcccccCcccc--cccceee-------------------------------------------------------
Q 044264 215 SLRYLPAGIERLTSLR--RVEKFVV------------------------------------------------------- 237 (439)
Q Consensus 215 ~~~~~~~~~~~l~~L~--~L~l~~~------------------------------------------------------- 237 (439)
.....|..++.+++|+ .|++.+|
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 4332333344444444 3333332
Q ss_pred --------------------ccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 238 --------------------GRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 238 --------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
......+..++.+++|+.|+++++. ...++..+..+++|++|++++|....
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH---------LSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC---------CSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc---------cCCCChhhcccccCCEEECccCCcCc
Confidence 2222223335666677777776662 22344556667777777777777666
Q ss_pred cCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEe--CCccccccC----------CCCCCCCC
Q 044264 298 VHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRV--GDEFLGVES----------DHGRASSS 363 (439)
Q Consensus 298 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~----------~~~~~~~~ 363 (439)
..|..+..+++|+.|++++|.....++. +..+++|+.|++++|...... +..+..... .....+..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 5455666777777777777765544443 666677777777666532221 111111100 01112233
Q ss_pred CcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 364 VVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
+..+++|++|+++++. +..... ......+++|++|++++|......|..+..+++|+.|++++|+
T Consensus 396 ~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 396 FKECPQLELLDLAFTR-LKVKDA--QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTCTTCSEEECTTCC-EECCTT--CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred hcCCccCCeEECCCCc-CCCccc--chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 4455556666665542 111100 0012345666666666663323334445556666666666663
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=232.52 Aligned_cols=302 Identities=17% Similarity=0.207 Sum_probs=244.3
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++++.+.++....++. +..+++|++|++++|. +.. ++. +..+++|++|++++ +. +..++ .+
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~-----i~~-~~~-~~~l~~L~~L~L~~------n~-i~~~~-~~ 106 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ-----ITD-ISP-LSNLVKLTNLYIGT------NK-ITDIS-AL 106 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-----CCC-CGG-GTTCTTCCEEECCS------SC-CCCCG-GG
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCc-----ccc-chh-hhcCCcCCEEEccC------Cc-ccCch-HH
Confidence 5779999999998888865 7889999999999997 343 333 88999999999999 76 44554 58
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
..+++|++|++++|.++.++. +..+++|++|++++|.....++. +..+++|++|++++|.. ...+. +..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSL 182 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEE
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEE
Confidence 999999999999999998887 88999999999999975665554 89999999999999984 44433 8899999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
++.+|....... +..+++|+.|+++++.... +.. +..+++|++|++++|..... +. +..+++|+.|
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 248 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITD---------ITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWL 248 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCC---------Cch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEE
Confidence 999887654333 8899999999999884322 111 67889999999999999885 44 8899999999
Q ss_pred eecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCccc
Q 044264 313 TLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKG 392 (439)
Q Consensus 313 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 392 (439)
++++|.... ++.+..+++|+.|++++|. +..++. +..+++|++|++++|. +..... ...
T Consensus 249 ~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~---------------~~~l~~L~~L~L~~n~-l~~~~~---~~l 307 (347)
T 4fmz_A 249 EIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV---------------LNNLSQLNSLFLNNNQ-LGNEDM---EVI 307 (347)
T ss_dssp ECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG---------------GGGCTTCSEEECCSSC-CCGGGH---HHH
T ss_pred ECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh---------------hcCCCCCCEEECcCCc-CCCcCh---hHh
Confidence 999997654 5668899999999999996 444421 5678999999999984 333221 122
Q ss_pred ccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 393 EIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 393 ~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
..+|+|++|++++|+ ++.++. +..+++|+.|++++|+
T Consensus 308 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred hccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 468999999999995 777655 8889999999999995
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=240.17 Aligned_cols=332 Identities=18% Similarity=0.120 Sum_probs=214.3
Q ss_pred cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
...+++++.+.++....++ ..+..+++|++|++++|. +....|..|..+++|++|++++ |. +..+|.
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~------N~-l~~lp~ 86 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-----IQYLDISVFKFNQELEYLDLSH------NK-LVKISC 86 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-----CCEEEGGGGTTCTTCCEEECCS------SC-CCEEEC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCc-----cCCcChHHhhcccCCCEEecCC------Cc-eeecCc
Confidence 3478999999999887776 578899999999999987 6677788899999999999999 77 556776
Q ss_pred ccccccccceeecCCCCCcc--CChhHhhccCCcEeecCCCCcccccchhhhhcccc--ceeeccCccc--cccCCcccc
Q 044264 151 NIEKLVHLRYLNLSRLKIEK--LPETLCELYNLQLLNVESCQDLKELPQGFGKLINL--MYLLNRGTES--LRYLPAGIE 224 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~ 224 (439)
. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| +.|++++|.. ....|..+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 5 89999999999999875 57889999999999999987 333 346677777 8888877765 333333332
Q ss_pred c--------------------------Ccccc------------------------------------------------
Q 044264 225 R--------------------------LTSLR------------------------------------------------ 230 (439)
Q Consensus 225 ~--------------------------l~~L~------------------------------------------------ 230 (439)
. +++|+
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 2 33333
Q ss_pred ---------cccceeecccccccccc-----ccccCcceeeecccCCcchhccCChHHHHHh------------------
Q 044264 231 ---------RVEKFVVGRGVARSSEL-----ENKKNLIDLLLYFGHGNEERKRKKDEEVLEA------------------ 278 (439)
Q Consensus 231 ---------~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~------------------ 278 (439)
+|++.+|...+..+..+ +.+++|+.++++.+.... ....+...
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~-----p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF-----PQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCS-----CTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceec-----chhhhhcccccCceeEEEcCCCcccc
Confidence 33333333333444444 455555555554442100 00111111
Q ss_pred ---CCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCC--cCCC-CCCcCCcCeeeeccccCeeEeCCcccc
Q 044264 279 ---LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCE--HLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLG 352 (439)
Q Consensus 279 ---l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~ 352 (439)
...+++|++|++++|.....+|.++..+++|+.|++++|.... .+|. ++.+++|+.|++++|.....++.....
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 1466777777777777766446667777777777777776654 2332 566777777777777633324432110
Q ss_pred c-cCCC-------CCCCCCCcCC-CCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCC-CCCCCCc
Q 044264 353 V-ESDH-------GRASSSVVAF-PKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDH-LLQTTTL 422 (439)
Q Consensus 353 ~-~~~~-------~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~-l~~~~~L 422 (439)
. .... .........+ ++|+.|+++++ .++.++. ....+++|++|++++| .++.+|.. +..+++|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK----QVVKLEALQELNVASN-QLKSVPDGIFDRLTSL 470 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccch----hhhcCCCCCEEECCCC-cCCccCHHHhccCCcc
Confidence 0 0000 0000001112 56777777665 3443332 1236788999999998 67788775 7788899
Q ss_pred cEEEEcCCc
Q 044264 423 QKLEIWGCP 431 (439)
Q Consensus 423 ~~L~i~~c~ 431 (439)
+.|++++|+
T Consensus 471 ~~L~l~~N~ 479 (520)
T 2z7x_B 471 QKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 999998875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=231.12 Aligned_cols=304 Identities=17% Similarity=0.128 Sum_probs=238.6
Q ss_pred CCceeEEEEEcCCCCCcCcc-cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPIS-FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.+.....+|.. +..+++|++|++.++. +....+..|..+++|++|++++ +.+....|..
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGF------NAIRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCCCCTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-----ccccChhhccCCCCcCEEECCC------CCCCcCCHHH
Confidence 46788899988888888765 4678899999999987 5566666788999999999998 7744445566
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
+..+++|++|++++|.++.+|.. ++++++|++|++++|......|..+..+++|++|++++|.. ..+ .+..+++|+
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~l~~L~ 189 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPSLF 189 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBC--CGGGCTTCS
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Ccc--ccccccccc
Confidence 88899999999999999988876 48899999999999884333455688899999999998874 333 356788899
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
.|++..+... .+...++|+.|+++++.... ++ ...+++|+.|++++|.... +.++..+++|+
T Consensus 190 ~L~l~~n~l~-----~~~~~~~L~~L~l~~n~l~~---------~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~ 251 (390)
T 3o6n_A 190 HANVSYNLLS-----TLAIPIAVEELDASHNSINV---------VR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLV 251 (390)
T ss_dssp EEECCSSCCS-----EEECCSSCSEEECCSSCCCE---------EE--CCCCSSCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred eeeccccccc-----ccCCCCcceEEECCCCeeee---------cc--ccccccccEEECCCCCCcc--cHHHcCCCCcc
Confidence 8888876554 24455689999998884322 11 1335799999999999988 56888999999
Q ss_pred EEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCC
Q 044264 311 ILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (439)
.|++++|......+. +..+++|+.|++++|. +..++.. ...+|+|++|+++++ .+..++..
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------------~~~l~~L~~L~L~~n-~l~~~~~~-- 313 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------GQPIPTLKVLDLSHN-HLLHVERN-- 313 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS--------------SSCCTTCCEEECCSS-CCCCCGGG--
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc--------------cCCCCCCCEEECCCC-cceecCcc--
Confidence 999999988766554 8899999999999987 5555432 456899999999998 45554422
Q ss_pred cccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 390 ~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
...+++|++|++++| .++.++ +..+++|+.|++++|+
T Consensus 314 --~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 --QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred --ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 256899999999999 577775 6789999999999986
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=238.91 Aligned_cols=345 Identities=17% Similarity=0.125 Sum_probs=200.2
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
..+..+.....++. ....++.+.+.++....++ ..+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-----IRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp EEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-----CCEECTTTTTTCTTCCEEECTT
T ss_pred EEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-----CCcCCHHHhCCCCCCCEEECCC
Confidence 34444444444443 4577888888888887775 477888888888888887 5666677788888888888888
Q ss_pred cccccccccccccccccccccccceeecCCCCCccCC--hhHhhccCCcEeecCCCCcccccchhhhhcccc--ceeecc
Q 044264 136 FQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP--ETLCELYNLQLLNVESCQDLKELPQGFGKLINL--MYLLNR 211 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L--~~L~l~ 211 (439)
|. +..+|.. .+++|++|++++|.++.+| ..++++++|++|++++|. +.. ..+..+++| ++|+++
T Consensus 110 ------N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 110 ------NR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp ------SC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEE
T ss_pred ------Cc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEee
Confidence 66 4567765 7888888888888887654 678888888888888877 332 234555555 777777
Q ss_pred Cccc--cccCCccccc--------------------------Cc------------------------------------
Q 044264 212 GTES--LRYLPAGIER--------------------------LT------------------------------------ 227 (439)
Q Consensus 212 ~~~~--~~~~~~~~~~--------------------------l~------------------------------------ 227 (439)
+|.. ....|..+.. ++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 7764 3333333322 12
Q ss_pred -------------------ccccccceeecccccccccc-----ccccCcceeeecccCCcchhccCCh-HHHHHh----
Q 044264 228 -------------------SLRRVEKFVVGRGVARSSEL-----ENKKNLIDLLLYFGHGNEERKRKKD-EEVLEA---- 278 (439)
Q Consensus 228 -------------------~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~---- 278 (439)
+|++|++.+|...+..+..+ +.++.|+.+++..+... .. ..+...
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~------~p~~~~~~~~~~~ 331 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL------FSKEALYSVFAEM 331 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS------SCHHHHHHHHHTC
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceee------cChhhhhhhhccC
Confidence 34444444444433333333 22222222221111100 00 000000
Q ss_pred -----------------CCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCc--CC-CCCCcCCcCeeeec
Q 044264 279 -----------------LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEH--LP-PLGKLPSLEQLYFY 338 (439)
Q Consensus 279 -----------------l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~l~~L~~L~l~ 338 (439)
...+++|++|++++|......|.++..+++|+.|++++|..... +| .++.+++|+.|+++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 14556666666666666554455566666666666666654431 11 25566666666666
Q ss_pred cccCeeEeCCccccc-cCCC-------CCCCCCCcCC-CCcceeeccCCCCccccccCCCcccccCcccceeeecccccc
Q 044264 339 SMGSVKRVGDEFLGV-ESDH-------GRASSSVVAF-PKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTL 409 (439)
Q Consensus 339 ~~~~l~~~~~~~~~~-~~~~-------~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l 409 (439)
+|.....++...... .... .........+ ++|++|+++++ .++.++... ..+++|++|++++| .+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~----~~l~~L~~L~L~~N-~l 485 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV----THLQALQELNVASN-QL 485 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT----TSSCCCSEEECCSS-CC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh----cCCCCCCEEECCCC-CC
Confidence 665332233321100 0000 0000001223 57777777776 455443222 36788888888888 67
Q ss_pred cCCCCC-CCCCCCccEEEEcCCc
Q 044264 410 RALPDH-LLQTTTLQKLEIWGCP 431 (439)
Q Consensus 410 ~~l~~~-l~~~~~L~~L~i~~c~ 431 (439)
+.+|.. +..+++|+.|++++|+
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCHHHHhcCCCCCEEEecCCC
Confidence 788776 7778888888888875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=243.82 Aligned_cols=352 Identities=14% Similarity=0.083 Sum_probs=227.1
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
.+++.+.....++. ....++.+.+.++....++. .+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-----IETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTT
T ss_pred ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-----ccccCHHHhhchhhcCEeECCC
Confidence 34555555544444 56789999999888877755 78889999999999987 5666677889999999999999
Q ss_pred cccccccccccccccccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCc
Q 044264 136 FQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~ 213 (439)
|.+....|..++.+++|++|++++|.++.++ ..++++++|++|++++|.... .+|..++++++|++|++++|
T Consensus 90 ------n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 90 ------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp ------CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ------CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 7755555888999999999999999988776 578899999999999998433 57888999999999999998
Q ss_pred cccccCCcccccCcccc----cccceeeccccccccccccccCcceeeecccCCcch-----------------------
Q 044264 214 ESLRYLPAGIERLTSLR----RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEE----------------------- 266 (439)
Q Consensus 214 ~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----------------------- 266 (439)
......|..++.+++|+ .|++..|......+..+... +|+.|+++++.....
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 76554555566666554 46666665543333333322 566666655532100
Q ss_pred ---------------------------hccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCC
Q 044264 267 ---------------------------RKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 267 ---------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 319 (439)
........++. +..+++|+.|++.++..... | ++..+++|+.|++++|..
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC
Confidence 00000111111 44556677777777666554 4 566677777777777766
Q ss_pred CCcCCCCCCcCCcCeeeeccccCeeEeCCccccc--------cCCCCC--CCCCCcCCCCcceeeccCCCCccccccCCC
Q 044264 320 CEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGV--------ESDHGR--ASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389 (439)
Q Consensus 320 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--------~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (439)
..+|.+ .+++|+.|++++|..+..++...... +..... .+..+..+++|++|+++++. +..++
T Consensus 320 -~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~---- 392 (606)
T 3vq2_A 320 -KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS---- 392 (606)
T ss_dssp -SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC----
T ss_pred -cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch----
Confidence 555555 66677777776665444331100000 000000 01123456666666666653 33332
Q ss_pred cccccCcccceeeecccccccCCC-CCCCCCCCccEEEEcCCc
Q 044264 390 IKGEIMPRLSSLCIARCPTLRALP-DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 390 ~~~~~~p~L~~L~i~~c~~l~~l~-~~l~~~~~L~~L~i~~c~ 431 (439)
.....+++|++|++++|......| ..+..+++|+.|++++|.
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 122467888888888884333334 467778888888888875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=234.70 Aligned_cols=321 Identities=17% Similarity=0.138 Sum_probs=243.5
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-cccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~ 156 (439)
.+.........+|. + .+++++|++++|. +....|..|..+++|++|++++ +.+...+ +..+..++
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNS-----IAELNETSFSRLQDLQFLKVEQ------QTPGLVIRNNTFRGLS 79 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSC-----CCEECTTTTSSCTTCCEEECCC------CSTTCEECTTTTTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCc-----cCcCChhHhccCccccEEECcC------CcccceECcccccccc
Confidence 34555566677776 3 3789999999998 5667788899999999999999 7644344 56689999
Q ss_pred ccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchh--hhhccccceeeccCccccccCCcc-cccCcccccc
Q 044264 157 HLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG--FGKLINLMYLLNRGTESLRYLPAG-IERLTSLRRV 232 (439)
Q Consensus 157 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~--i~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 232 (439)
+|++|++++|.++.+ |..++++++|++|++++|......|.. ++.+++|++|++++|......|.. +..+++|++|
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 999999999998866 778999999999999999844445554 889999999999999866555665 8899999999
Q ss_pred cceeeccccccccccccc--cCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh------
Q 044264 233 EKFVVGRGVARSSELENK--KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM------ 304 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~------ 304 (439)
++++|......+..+..+ ++|+.|+++.+.................+..+++|++|++++|......|..+.
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 999999888777778776 689999998885332111112223334455678899999998877543233222
Q ss_pred ---------------------------------cccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCcc
Q 044264 305 ---------------------------------SLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEF 350 (439)
Q Consensus 305 ---------------------------------~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~ 350 (439)
..++|+.|++++|......+. ++.+++|+.|++++|. +..++..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~- 317 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN- 317 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-
Confidence 125788888888877766665 7888999999999887 4444322
Q ss_pred ccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEcC
Q 044264 351 LGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWG 429 (439)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~ 429 (439)
.+..+++|++|+++++. +..+.. .....+++|++|++++| .++.+ |..+..+++|+.|++++
T Consensus 318 ------------~~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 318 ------------AFWGLTHLLKLNLSQNF-LGSIDS---RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp ------------TTTTCTTCCEEECCSSC-CCEECG---GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred ------------HhcCcccCCEEECCCCc-cCCcCh---hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC
Confidence 25678999999999873 444321 12256899999999999 45554 77888999999999999
Q ss_pred Cc
Q 044264 430 CP 431 (439)
Q Consensus 430 c~ 431 (439)
|.
T Consensus 381 N~ 382 (455)
T 3v47_A 381 NQ 382 (455)
T ss_dssp SC
T ss_pred Cc
Confidence 84
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-28 Score=240.49 Aligned_cols=328 Identities=15% Similarity=0.079 Sum_probs=220.5
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+.+.+.+.....+|..+. +++++|++++|. +....|..|..+++|++|++++ |.+....|..+..++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY-----ISELWTSDILSLSKLRILIISH------NRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC-----CCCCCHHHHTTCTTCCEEECCS------SCCCEEEGGGGTTCT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc-----ccccChhhccccccccEEecCC------CccCCcChHHhhccc
Confidence 466777788888888766 899999999998 6667778899999999999999 775555678899999
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCccccccCCcccccCccc--cccc
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL--RRVE 233 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~ 233 (439)
+|++|++++|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..+..+++| +.|+
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVL 144 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEE
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEE
Confidence 999999999999999977 89999999999998443 467899999999999999988543 356677777 9999
Q ss_pred ceeecc--ccccccccc--------------------------cccCcceeeecccC-----------------------
Q 044264 234 KFVVGR--GVARSSELE--------------------------NKKNLIDLLLYFGH----------------------- 262 (439)
Q Consensus 234 l~~~~~--~~~~~~~l~--------------------------~l~~L~~L~l~~~~----------------------- 262 (439)
+..|.. ....+..+. .+++|+.|+++++.
T Consensus 145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~ 224 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224 (520)
T ss_dssp EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCE
T ss_pred eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhh
Confidence 988876 333333332 34455555555441
Q ss_pred -------Ccchhcc-------------------CChHHHHHhC-----CCCCCccEEEEeeccCCccCC-ch--------
Q 044264 263 -------GNEERKR-------------------KKDEEVLEAL-----QPPPNLKHLGIHQYRGNNVHP-HW-------- 302 (439)
Q Consensus 263 -------~~~~~~~-------------------~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~l~-~~-------- 302 (439)
....... .....++..+ ..+++|+.++++++.. .+ | .+
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~-p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF-PQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS-CTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec-chhhhhcccccC
Confidence 0000000 0000111122 3333333333333333 11 2 11
Q ss_pred -----------------hhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCee--EeCCccccc---------
Q 044264 303 -----------------MMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVK--RVGDEFLGV--------- 353 (439)
Q Consensus 303 -----------------~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~--~~~~~~~~~--------- 353 (439)
...+++|+.|++++|......|. ++.+++|+.|++++|.... .++..+...
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 15778999999999988876664 8999999999999998332 222111110
Q ss_pred -cCCCC-CCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 354 -ESDHG-RASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 354 -~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
+.... .....+..+++|++|+++++.--..++ ....++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG------GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchh------hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 11111 111123445566666666553111111 011268999999998 677898888899999999999984
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=239.77 Aligned_cols=172 Identities=16% Similarity=0.067 Sum_probs=96.2
Q ss_pred ccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC--C
Q 044264 248 ENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP--P 325 (439)
Q Consensus 248 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~ 325 (439)
..+++|+.|+++++..... ...+..+..+++|++|++++|..... +..+..+++|+.|++++|......+ .
T Consensus 344 ~~~~~L~~L~l~~n~l~~~------~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFK------GCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCBEE------EEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccCCCCCEEeCcCCccCcc------ccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhh
Confidence 3556677777766632210 00122344566777777776665554 3335566666666666665544433 2
Q ss_pred CCCcCCcCeeeeccccCeeEeCCccccccC----------CC-CCCCCCCcCCCCcceeeccCCCCccccccCCCccccc
Q 044264 326 LGKLPSLEQLYFYSMGSVKRVGDEFLGVES----------DH-GRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI 394 (439)
Q Consensus 326 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----------~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (439)
+..+++|+.|++++|......+..+..... .. +..+..+..+++|++|++++|. ++.+.. .....
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~ 492 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP---TAFNS 492 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT---TTTTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh---hhhhc
Confidence 555666666666666533222221111100 00 0122336667888888888763 333311 12246
Q ss_pred CcccceeeecccccccCCC-CCCCCCCCccEEEEcCCc
Q 044264 395 MPRLSSLCIARCPTLRALP-DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 395 ~p~L~~L~i~~c~~l~~l~-~~l~~~~~L~~L~i~~c~ 431 (439)
+++|++|++++| .++.+| ..+..+++|+.|++++|+
T Consensus 493 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 493 LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 788999999988 566654 456788999999998864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=238.42 Aligned_cols=251 Identities=16% Similarity=0.121 Sum_probs=108.8
Q ss_pred cceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|+.|++++|.++.++. .++.+++|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|+.|++.+
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 3344444444433332 24445555555555554 444554455555555555555543333333444555555555554
Q ss_pred eccccccc-cccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeec
Q 044264 237 VGRGVARS-SELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLS 315 (439)
Q Consensus 237 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 315 (439)
|......+ ..+..+++|+.|+++++.... ....+..+..+++|++|++++|......|..+..+++|+.|+++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIET------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCE------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred CCcccccchhhhhccCcCCEEECCCCcccc------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 44332222 224455555555555442111 00002234445555555555554444334444455555555555
Q ss_pred CCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccc
Q 044264 316 HCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGE 393 (439)
Q Consensus 316 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 393 (439)
+|......+. +..+++|+.|++++|.... .+ +..+..+++|++|+++++. +............
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-------------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SS-------------EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQ 473 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBT-TC-------------TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGG
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCC-cC-------------HHHHhCCCCCCEEECCCCC-CCccccccchhhc
Confidence 5544333221 4445555555555544211 11 1113345555555555542 1111111111123
Q ss_pred cCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 394 IMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 394 ~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
.+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 4455555555555222222344455555555555555
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=236.33 Aligned_cols=328 Identities=14% Similarity=0.116 Sum_probs=228.5
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
..+.+.+.+.....+|..+. +++++|++++|. +....+..|..+++|++|++++ |.+....|..+..
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~ 98 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-----ISELRMPDISFLSELRVLRLSH------NRIRSLDFHVFLF 98 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-----CCCCCGGGTTTCTTCCEEECCS------CCCCEECTTTTTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-----ccccChhhhccCCCccEEECCC------CCCCcCCHHHhCC
Confidence 34788888888888998764 899999999998 6677777899999999999999 7755555788999
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCccccc--chhhhhccccceeeccCccccccCCcccccCccc--c
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKEL--PQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL--R 230 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~ 230 (439)
+++|++|++++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| +
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhceee
Confidence 99999999999999999987 89999999999998 5554 5789999999999999987543 234555555 9
Q ss_pred cccceeecc--ccccccccc--------------------------cccCcceeeecccCCcchh---------------
Q 044264 231 RVEKFVVGR--GVARSSELE--------------------------NKKNLIDLLLYFGHGNEER--------------- 267 (439)
Q Consensus 231 ~L~l~~~~~--~~~~~~~l~--------------------------~l~~L~~L~l~~~~~~~~~--------------- 267 (439)
.|++..|.. ....+..+. .+++|+.++++.+......
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999988876 333333333 3456666666654200000
Q ss_pred ---------ccCChHHHHHhCCCCCCccEEEEeeccCCccCCchh-----------------------------------
Q 044264 268 ---------KRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWM----------------------------------- 303 (439)
Q Consensus 268 ---------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~----------------------------------- 303 (439)
.......++..+. .++|++|++++|.....+|.++
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 0000111111111 2367777777766553223332
Q ss_pred ------------------hcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCC---ccccc--------
Q 044264 304 ------------------MSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGD---EFLGV-------- 353 (439)
Q Consensus 304 ------------------~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~---~~~~~-------- 353 (439)
..+++|+.|++++|......|. ++.+++|+.|++++|. ++.++. .+...
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC
Confidence 5678999999999988876665 8999999999999987 444331 11110
Q ss_pred --cCCCC-CCCCCCcCCCCcceeeccCCCCccccccCCCcccccC-cccceeeecccccccCCCCCCCCCCCccEEEEcC
Q 044264 354 --ESDHG-RASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIM-PRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWG 429 (439)
Q Consensus 354 --~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~ 429 (439)
+.... .....+..+++|++|+++++. ++... ...+ ++|+.|++++| .++.+|..+..+++|+.|++++
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSV------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCC-CCcch------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 11111 112224455666666666653 21111 1223 69999999999 7889998888999999999999
Q ss_pred Cc
Q 044264 430 CP 431 (439)
Q Consensus 430 c~ 431 (439)
|.
T Consensus 483 N~ 484 (562)
T 3a79_B 483 NQ 484 (562)
T ss_dssp SC
T ss_pred CC
Confidence 84
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=238.08 Aligned_cols=304 Identities=17% Similarity=0.128 Sum_probs=234.9
Q ss_pred CCceeEEEEEcCCCCCcCcc-cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPIS-FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
...++.+.+.++....+|.. +..+++|+.|++.+|. +....+..|..+++|++|++++ |.+....|..
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~ 118 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGF------NAIRYLPPHV 118 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCCCCTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-----CCCCChHHhcCCCCCCEEECCC------CcCCCCCHHH
Confidence 35677888888777777765 4568889999999887 5666666788889999999988 7744545556
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
++.+++|++|++++|.++.+|.. ++++++|++|++++|......|..++.+++|++|++++|.. ..+ .++.+++|+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~--~~~~l~~L~ 195 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPSLF 195 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBC--CGGGCTTCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCc--Chhhhhhhh
Confidence 78889999999999998888876 48889999999998884444455688899999999988874 333 256778888
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
.|++..|... .+...++|+.|+++++.... ++ ...+++|+.|++++|.+.. +.++..+++|+
T Consensus 196 ~L~l~~n~l~-----~l~~~~~L~~L~ls~n~l~~---------~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~ 257 (597)
T 3oja_B 196 HANVSYNLLS-----TLAIPIAVEELDASHNSINV---------VR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLV 257 (597)
T ss_dssp EEECCSSCCS-----EEECCTTCSEEECCSSCCCE---------EE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred hhhcccCccc-----cccCCchhheeeccCCcccc---------cc--cccCCCCCEEECCCCCCCC--ChhhccCCCCC
Confidence 8888776554 34556689999998884322 11 1224689999999999988 77889999999
Q ss_pred EEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCC
Q 044264 311 ILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDT 389 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (439)
.|++++|.+....|. ++.+++|+.|++++|. +..++.. ...+|+|+.|++++|. +..++..
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~--------------~~~l~~L~~L~Ls~N~-l~~i~~~-- 319 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------GQPIPTLKVLDLSHNH-LLHVERN-- 319 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS--------------SSCCTTCCEEECCSSC-CCCCGGG--
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc--------------cccCCCCcEEECCCCC-CCccCcc--
Confidence 999999988776664 8899999999999987 5555432 4568999999999974 4444322
Q ss_pred cccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 390 IKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 390 ~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
...+++|+.|++++| .+..++ +..+++|+.|++++|+
T Consensus 320 --~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 --QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred --cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 256899999999999 566665 6779999999999986
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=242.08 Aligned_cols=341 Identities=15% Similarity=0.075 Sum_probs=235.8
Q ss_pred EEEeeCCCCCccccccCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 57 FTVEIDGREEPFIDSLGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
...++.......++.....++.+.+..+.+..+ +..+.++++|++|++++|.. .....|..|..+++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----PLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC----CCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC----ccccCHHHhcCCCCCCEEECCC
Confidence 345566666666666789999999999988766 67889999999999999851 2334477899999999999999
Q ss_pred cccccccccccccccccccccccceeecCCCCCcc-CChh--HhhccCCcEeecCCCCccccc-chhhhhccccceeecc
Q 044264 136 FQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPET--LCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNR 211 (439)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~ 211 (439)
|.+....|..+..+++|++|++++|.++. +|.. ++++++|++|++++|...... +..++++++|++|+++
T Consensus 83 ------N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 ------SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp ------CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred ------CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 87556668899999999999999999874 5554 889999999999999844333 3578999999999999
Q ss_pred CccccccCCcccccC--cccccccceeeccccccccccccccC------cceeeecccCCcchhccCC------------
Q 044264 212 GTESLRYLPAGIERL--TSLRRVEKFVVGRGVARSSELENKKN------LIDLLLYFGHGNEERKRKK------------ 271 (439)
Q Consensus 212 ~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~------------ 271 (439)
+|......+..+..+ ++|+.|++..|......+..++.+++ |+.|+++++..........
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 998766677777776 88999999988887777766666665 8888888773211000000
Q ss_pred ----------------hHHHHHhCCC--CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCc
Q 044264 272 ----------------DEEVLEALQP--PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSL 332 (439)
Q Consensus 272 ----------------~~~~~~~l~~--~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L 332 (439)
.......+.. .++|+.|++++|......+..+..+++|+.|++++|......+. +..+++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 0000111111 25778888877777666566677777888888887776655553 6777788
Q ss_pred CeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 333 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+.|++++|. +..+.. ..+..+++|+.|+++++ .+..+... ....+++|+.|++++| .++.+
T Consensus 317 ~~L~Ls~N~-l~~~~~-------------~~~~~l~~L~~L~L~~N-~i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~i 377 (844)
T 3j0a_A 317 QVLNLSYNL-LGELYS-------------SNFYGLPKVAYIDLQKN-HIAIIQDQ---TFKFLEKLQTLDLRDN-ALTTI 377 (844)
T ss_dssp CEEEEESCC-CSCCCS-------------CSCSSCTTCCEEECCSC-CCCCCCSS---CSCSCCCCCEEEEETC-CSCCC
T ss_pred CEEECCCCC-CCccCH-------------HHhcCCCCCCEEECCCC-CCCccChh---hhcCCCCCCEEECCCC-CCCcc
Confidence 888887776 332221 11445666777777665 23332211 1234566666666666 34443
Q ss_pred CCCCCCCCCccEEEEcCC
Q 044264 413 PDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c 430 (439)
+. +++|+.|++++|
T Consensus 378 ~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 378 HF----IPSIPDIFLSGN 391 (844)
T ss_dssp SS----CCSCSEEEEESC
T ss_pred cC----CCCcchhccCCC
Confidence 32 455555555544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=232.30 Aligned_cols=330 Identities=19% Similarity=0.206 Sum_probs=199.6
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
...++++.+.++....+ |..+.++++|++|++++|. +....|..|..+++|++|++++ |.+....+..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~ 93 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSD------NHLSSLSSSW 93 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTT------SCCCSCCHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-----cCccChhhccccccCCEEECCC------CccCccCHHH
Confidence 35677777776666555 3456667777777777766 4455555666777777777776 5533333344
Q ss_pred cccccccceeecCCCCCcc--CChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccC--
Q 044264 152 IEKLVHLRYLNLSRLKIEK--LPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERL-- 226 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l-- 226 (439)
++.+++|++|++++|.++. .|..++++++|++|++++|.....+| ..++.+++|++|++++|......|..++.+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 6667777777777777653 34556667777777776665444444 356666666666666665444344444333
Q ss_pred ----------------------cccccccceeeccccc------------------------------------------
Q 044264 227 ----------------------TSLRRVEKFVVGRGVA------------------------------------------ 242 (439)
Q Consensus 227 ----------------------~~L~~L~l~~~~~~~~------------------------------------------ 242 (439)
++|+.|++.+|...+.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 3333333333322110
Q ss_pred -----------------------------------------------------------------------ccccc-ccc
Q 044264 243 -----------------------------------------------------------------------RSSEL-ENK 250 (439)
Q Consensus 243 -----------------------------------------------------------------------~~~~l-~~l 250 (439)
++..+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 01111 234
Q ss_pred cCcceeeecccCCcchhccCChHHH---HHhCCCCCCccEEEEeeccCCccCC---chhhcccCccEEeecCCCCCCcCC
Q 044264 251 KNLIDLLLYFGHGNEERKRKKDEEV---LEALQPPPNLKHLGIHQYRGNNVHP---HWMMSLTDLRILTLSHCINCEHLP 324 (439)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~ 324 (439)
++|+.|++++|. ....+ ...+..+++|++|++++|.+... + ..+..+++|+.|++++|.+. .+|
T Consensus 334 ~~L~~L~Ls~N~--------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 334 KSLEFLDLSENL--------MVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-QKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp TTCCEEECCSSC--------CCHHHHHHHTCTTSSTTCCEEECTTSCCCCH-HHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred ccccEEEccCCc--------cccccccchhhhhccccCcEEEccCCccccc-ccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 555555555553 22222 23366778888888888877764 3 34668888888888888766 455
Q ss_pred C-CCCcCCcCeeeeccccCeeEeCCccccc----cCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccc
Q 044264 325 P-LGKLPSLEQLYFYSMGSVKRVGDEFLGV----ESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLS 399 (439)
Q Consensus 325 ~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~ 399 (439)
. +..+++|+.|++++|. ++.++...... .-...........+++|++|+++++ .++.++. ...+++|+
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-----~~~l~~L~ 476 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-----ASLFPVLL 476 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-----GGGCTTCC
T ss_pred hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-----cccCccCC
Confidence 4 7778888888888887 44443321100 0000011111246888999999887 4555442 24588999
Q ss_pred eeeecccccccCCC-CCCCCCCCccEEEEcCCc
Q 044264 400 SLCIARCPTLRALP-DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 400 ~L~i~~c~~l~~l~-~~l~~~~~L~~L~i~~c~ 431 (439)
.|++++| .++.++ ..+..+++|+.|++++|+
T Consensus 477 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 477 VMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9999998 566664 457889999999998886
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=236.12 Aligned_cols=340 Identities=15% Similarity=0.122 Sum_probs=240.7
Q ss_pred EeeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcc
Q 044264 59 VEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (439)
+++.+.....++. ...+++++.+.++....++. .+.++++|++|++++|. +....|..|..+++|++|++++
T Consensus 9 ~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~- 82 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-----ISKLEPELCQKLPMLKVLNLQH- 82 (680)
T ss_dssp EECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHHCTTCCEEECCS-
T ss_pred eECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-----cCccCHHHHhcccCcCEEECCC-
Confidence 3444444444443 45789999999998877765 58889999999999987 6677788899999999999999
Q ss_pred cccccccccccccc-ccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcc
Q 044264 137 QMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 137 ~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+. +..+|. .+..+++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|.
T Consensus 83 -----n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 83 -----NE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp -----SC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred -----Cc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 77 445554 5899999999999999998887 578999999999999998555556678899999999999987
Q ss_pred ccccCCccc--ccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEee
Q 044264 215 SLRYLPAGI--ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQ 292 (439)
Q Consensus 215 ~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 292 (439)
.....+..+ ..+++|+.|+++.|......+..+..+++|+.|.+..+..... ....+...+ ..++|+.|++++
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~l-~~~~L~~L~L~~ 231 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS----LTEKLCLEL-ANTSIRNLSLSN 231 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH----HHHHHHHHH-TTSCCCEEECTT
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh----hHHHHHHHh-hhccccEEEccC
Confidence 544333333 3568999999999988877788888999999998877642210 111222222 347889999998
Q ss_pred ccCCccCCchhhcccC--ccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCC
Q 044264 293 YRGNNVHPHWMMSLTD--LRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPK 369 (439)
Q Consensus 293 ~~~~~~l~~~~~~~~~--L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (439)
+......|.++..++. |+.|++++|......+. ++.+++|+.|++++|......+.. +..+++
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------~~~l~~ 297 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--------------LHGLFN 297 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--------------TTTCTT
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--------------hcCCCC
Confidence 8887765677776654 99999998877665554 788889999999888743332222 445677
Q ss_pred cceeeccCCCCcc-----ccccCCCcccccCcccceeeecccccccCC-CCCCCCCCCccEEEEcCC
Q 044264 370 LKTIQFWDMYVLK-----EWDYGDTIKGEIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 370 L~~L~l~~~~~l~-----~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~c 430 (439)
|+.|+++++..-. .++.........+++|++|++++| .+..+ +..+..+++|+.|++++|
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCC
Confidence 7777776532111 111001111234566777777766 33333 334556666666666665
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=237.91 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=88.0
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.++....+ |..+.++++|++|++++|. +....|..|..+++|++|++++ |.+....+..
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~L~~------n~l~~~~~~~ 123 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-----IQSFSPGSFSGLTSLENLVAVE------TKLASLESFP 123 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-----CCCCCTTSSTTCTTCCEEECTT------SCCCCSSSSC
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-----ccccChhhcCCcccCCEEEccC------Cccccccccc
Confidence 56788888888877666 5567788888999888887 5666677788888888888888 6633334466
Q ss_pred cccccccceeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 152 IEKLVHLRYLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
++.+++|++|++++|.++ .+|..++++++|++|++++|......|..++.+.
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 788888888888888876 4678888888888888888763332333343333
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=224.96 Aligned_cols=311 Identities=19% Similarity=0.191 Sum_probs=137.7
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
..++.+.+.......+|. +..+++|++|++++|. +... +. +..+++|++|++++ +. +..++. +.
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~-----l~~~-~~-~~~l~~L~~L~l~~------n~-l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ-----LTDI-TP-LKNLTKLVDILMNN------NQ-IADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-----CCCC-GG-GTTCTTCCEEECCS------SC-CCCCGG-GT
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCc-----cCCc-hh-hhccccCCEEECCC------Cc-cccChh-hc
Confidence 345555555555444442 4445555555555554 2222 22 45555555555555 43 222222 45
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch--------------------hhhhccccceeeccCc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ--------------------GFGKLINLMYLLNRGT 213 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~--------------------~i~~l~~L~~L~l~~~ 213 (439)
.+++|++|++++|.++.++. +.++++|++|++++|. +..++. .+.++++|++|++++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 55555555555555555443 4555555555555544 333321 1344444444554444
Q ss_pred cccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 214 ESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
.. ..++ .+..+++|+.|++.+|...+..+ ++.+++|+.|+++++.... + ..+..+++|++|++++|
T Consensus 188 ~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 188 KV-SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---------I-GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CC-CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC---------C-GGGGGCTTCSEEECCSS
T ss_pred cC-CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc---------c-hhhhcCCCCCEEECCCC
Confidence 42 2221 24444455555554444332222 3444445555444442111 0 12334445555555554
Q ss_pred cCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccc----------cCCCCCCCCC
Q 044264 294 RGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGV----------ESDHGRASSS 363 (439)
Q Consensus 294 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~~~~~~~ 363 (439)
..... + .+..+++|+.|++++|.... ++.+..+++|+.|++++|. +..++. +... +...+. ..
T Consensus 254 ~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~--~~ 326 (466)
T 1o6v_A 254 QISNL-A-PLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDI--SP 326 (466)
T ss_dssp CCCCC-G-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCC--GG
T ss_pred ccccc-h-hhhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCc--hh
Confidence 44442 1 14444455555555444332 2224444444555444443 221111 0000 000000 00
Q ss_pred CcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 364 VVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
+..+++|++|++++| .+..+. ....+++|+.|++++| .+..++. +..+++|+.|++++|+
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc
Confidence 334555666666555 233221 2235566666777666 3344333 5666777777776663
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=219.96 Aligned_cols=282 Identities=18% Similarity=0.202 Sum_probs=229.3
Q ss_pred CCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
..+++++.|++.++. + ..++. +..+++|++|++++ +. +..++. +..+++|++|++++|.++.+|
T Consensus 41 ~~l~~L~~L~l~~~~-----i-~~~~~-~~~~~~L~~L~l~~------n~-i~~~~~-~~~l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEK-----V-ASIQG-IEYLTNLEYLNLNG------NQ-ITDISP-LSNLVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp HHHTTCSEEECCSSC-----C-CCCTT-GGGCTTCCEEECCS------SC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred hhcccccEEEEeCCc-----c-ccchh-hhhcCCccEEEccC------Cc-cccchh-hhcCCcCCEEEccCCcccCch-
Confidence 467899999999987 2 23443 78899999999999 76 555655 899999999999999999886
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCc
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNL 253 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 253 (439)
.+..+++|++|++++|. +..++. +..+++|++|++++|......+ .+..+++|+.|++.+|....... +..+++|
T Consensus 105 ~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 68999999999999998 777776 8999999999999997666554 48899999999999887654433 8899999
Q ss_pred ceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcC
Q 044264 254 IDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLE 333 (439)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 333 (439)
+.|+++++.... ++. +..+++|+.|+++++..... + .+..+++|+.|++++|.... ++.+..+++|+
T Consensus 180 ~~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~-~~~~~~l~~L~ 246 (347)
T 4fmz_A 180 YSLSLNYNQIED---------ISP-LASLTSLHYFTAYVNQITDI-T-PVANMTRLNSLKIGNNKITD-LSPLANLSQLT 246 (347)
T ss_dssp SEEECTTSCCCC---------CGG-GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCC-CGGGTTCTTCC
T ss_pred CEEEccCCcccc---------ccc-ccCCCccceeecccCCCCCC-c-hhhcCCcCCEEEccCCccCC-CcchhcCCCCC
Confidence 999999884322 112 67789999999999998874 3 38899999999999997754 44488999999
Q ss_pred eeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCC
Q 044264 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALP 413 (439)
Q Consensus 334 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~ 413 (439)
.|++++|. +..++. +..+++|++|++++| .++.++ ....+++|++|++++|......|
T Consensus 247 ~L~l~~n~-l~~~~~---------------~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 247 WLEIGTNQ-ISDINA---------------VKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp EEECCSSC-CCCCGG---------------GTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGH
T ss_pred EEECCCCc-cCCChh---------------HhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcCh
Confidence 99999997 443321 567899999999998 455542 23578999999999995444455
Q ss_pred CCCCCCCCccEEEEcCCc
Q 044264 414 DHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 414 ~~l~~~~~L~~L~i~~c~ 431 (439)
..+..+++|+.|++++|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHHTCTTCSEEECCSSS
T ss_pred hHhhccccCCEEEccCCc
Confidence 667889999999999996
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=227.39 Aligned_cols=310 Identities=19% Similarity=0.130 Sum_probs=243.5
Q ss_pred eeCCCCCccccc-cCCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccc
Q 044264 60 EIDGREEPFIDS-LGQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQ 137 (439)
Q Consensus 60 ~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 137 (439)
.+.+.....++. ....++.+.+.++....+ +..+.++++|+.|++++|. +....|..|..+++|++|++++
T Consensus 17 ~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~-- 89 (477)
T 2id5_A 17 LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFNLRTLGLRS-- 89 (477)
T ss_dssp ECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCS--
T ss_pred EeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-----cCEeChhhhhCCccCCEEECCC--
Confidence 333333333333 467899999999998777 4678899999999999987 6677788899999999999999
Q ss_pred cccccccccccc-cccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc
Q 044264 138 MWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~ 215 (439)
+. +..+| ..+..+++|++|++++|.+..+ |..+.++++|++|++++|......+..+..+++|++|++++|..
T Consensus 90 ----n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 90 ----NR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp ----SC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred ----Cc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 77 44555 4578999999999999998765 56789999999999999984444566789999999999999985
Q ss_pred cccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccC
Q 044264 216 LRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRG 295 (439)
Q Consensus 216 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 295 (439)
....+..+..+++|+.|++..|......+..+..+++|+.|+++++... ..++.......+|++|++++|.+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--------~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL--------DTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC--------CEECTTTTTTCCCSEEEEESSCC
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc--------cccCcccccCccccEEECcCCcc
Confidence 4333345889999999999999888777778999999999999987422 22233344456999999999998
Q ss_pred CccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceee
Q 044264 296 NNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQ 374 (439)
Q Consensus 296 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 374 (439)
....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|. +..+... .+..+++|+.|+
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------------~~~~l~~L~~L~ 302 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY-------------AFRGLNYLRVLN 302 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTT-------------TBTTCTTCCEEE
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHH-------------HhcCcccCCEEE
Confidence 886335678999999999999987655554 8899999999999998 4444332 256789999999
Q ss_pred ccCCCCccccccCCCcccccCcccceeeecccc
Q 044264 375 FWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 375 l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~ 407 (439)
++++ .++.++.. ....+++|++|++++++
T Consensus 303 L~~N-~l~~~~~~---~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 303 VSGN-QLTTLEES---VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSS-CCSCCCGG---GBSCGGGCCEEECCSSC
T ss_pred CCCC-cCceeCHh---HcCCCcccCEEEccCCC
Confidence 9987 45544322 12457899999999885
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=226.11 Aligned_cols=293 Identities=20% Similarity=0.256 Sum_probs=160.8
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.++....++. +..+++|+.|++.+|. +....+ +..+++|++|++++ +. +..++. +
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-----l~~~~~--~~~l~~L~~L~L~~------n~-l~~~~~-~ 130 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-----IADITP--LANLTNLTGLTLFN------NQ-ITDIDP-L 130 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-----CCCCGG--GTTCTTCCEEECCS------SC-CCCCGG-G
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-----cccChh--hcCCCCCCEEECCC------CC-CCCChH-H
Confidence 4667777777777766665 6677777777777765 333322 66777777777776 44 333333 5
Q ss_pred ccccccceeecCCCCCccCCh--------------------hHhhccCCcEeecCCCCcccccchhhhhccccceeeccC
Q 044264 153 EKLVHLRYLNLSRLKIEKLPE--------------------TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~--------------------~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~ 212 (439)
..+++|++|++++|.+..++. .+.++++|++|++++|. +..++ .+..+++|++|++++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCS
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecC
Confidence 566666666666665443321 24455666666666665 44443 256666666666666
Q ss_pred ccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccC-------------ChHHHHHhC
Q 044264 213 TESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRK-------------KDEEVLEAL 279 (439)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~l 279 (439)
|......| ++.+++|+.|++.+|..... ..+..+++|+.|+++++......... ....++. +
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-G
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-c
Confidence 65322221 44555566665555544321 23445555555555544211100000 0000111 3
Q ss_pred CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCC
Q 044264 280 QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGR 359 (439)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 359 (439)
..+++|+.|++++|..... + .+..+++|+.|++++|......+ +..+++|+.|++++|. +..+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~------------- 346 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDI-S-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDV------------- 346 (466)
T ss_dssp TTCTTCSEEECCSSCCSCC-G-GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCC-------------
T ss_pred cCCCccCeEEcCCCcccCc-h-hhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCc-------------
Confidence 4445555555555554442 1 14455555555555554433222 4455556666665554 2222
Q ss_pred CCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC
Q 044264 360 ASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD 414 (439)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~ 414 (439)
..+..+++|+.|++++|. +..+. +...+++|+.|++++| .+..+|.
T Consensus 347 --~~l~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQ-ISDLT-----PLANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp --GGGTTCTTCCEEECCSSC-CCBCG-----GGTTCTTCCEEECCCE-EEECCCB
T ss_pred --hhhccCCCCCEEeCCCCc-cCccc-----hhhcCCCCCEEeccCC-cccCCch
Confidence 126679999999999984 33332 2367899999999999 4555544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=221.18 Aligned_cols=296 Identities=18% Similarity=0.129 Sum_probs=232.0
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.++....+| .+..+++|++|++++|. +.+ +| +..+++|++|++++ |. +..++ +
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-----l~~-~~--~~~l~~L~~L~Ls~------N~-l~~~~--~ 102 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-----ITT-LD--LSQNTNLTYLACDS------NK-LTNLD--V 102 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-----CSC-CC--CTTCTTCSEEECCS------SC-CSCCC--C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-----CCe-Ec--cccCCCCCEEECcC------CC-Cceee--c
Confidence 477999999998888877 68899999999999997 333 33 78999999999999 76 44444 8
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
+.+++|++|++++|.++.+| ++.+++|++|++++|. +..++ ++.+++|++|++++|.....+ .+..+++|+.|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 89999999999999999886 8899999999999998 66664 789999999999999766665 47789999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+++.|.... ++ ++.+++|+.|++++|.... + .+..+++|+.|++++|.+..+ | +..+++|+.|
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~---------~--~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L 238 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITK---------L--DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYF 238 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC---------C--CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEE
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCe---------e--ccccCCCCCEEECcCCccccc-C--ccccCCCCEE
Confidence 999988765 23 8889999999999885332 1 377889999999999999885 6 7789999999
Q ss_pred eecCCCCCCcCCCCCCcCCcCeeee----------ccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCcc
Q 044264 313 TLSHCINCEHLPPLGKLPSLEQLYF----------YSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLK 382 (439)
Q Consensus 313 ~l~~~~~~~~~~~~~~l~~L~~L~l----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 382 (439)
++++|.+.... ++.+++|+.|++ ++|..++.++ ...+++|+.|++++|..+.
T Consensus 239 ~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----------------~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 239 DCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----------------AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----------------CTTCTTCCCCCCTTCTTCC
T ss_pred EeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----------------ccccccCCEEECCCCcccc
Confidence 99999876532 345555555544 4444333332 3458999999999998766
Q ss_pred ccccCC----CcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 383 EWDYGD----TIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 383 ~~~~~~----~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
.++... .......|+|++|++++| .++.++ +..+++|+.|+++++.
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred eeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 655321 112245678888888887 666664 7889999999998874
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=220.98 Aligned_cols=285 Identities=16% Similarity=0.122 Sum_probs=232.4
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE- 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~- 173 (439)
.+++++.+++.++. +....+..+..+++|++|++++ +.+....+..+..+++|++|++++|.++.+|+
T Consensus 43 ~l~~l~~l~l~~~~-----l~~l~~~~~~~l~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-----MRKLPAALLDSFRQVELLNLND------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE-----ESEECTHHHHHCCCCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCceEEEecCCc-----hhhCChhHhcccccCcEEECCC------CcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 46899999999987 5555556689999999999999 77444445578999999999999999988764
Q ss_pred hHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..+..+++|++|++++|..... .++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 58999999999999998 7788776 58999999999999986555566789999999999999877643 4678899
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCc
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSL 332 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 332 (439)
|+.|+++++... .+...++|++|++++|..... |.. .+++|+.|++++|.... .+.+..+++|
T Consensus 188 L~~L~l~~n~l~-------------~~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-~~~l~~l~~L 250 (390)
T 3o6n_A 188 LFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-TAWLLNYPGL 250 (390)
T ss_dssp CSEEECCSSCCS-------------EEECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred cceeeccccccc-------------ccCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-cHHHcCCCCc
Confidence 999999988422 234567999999999998876 443 45899999999997754 4668889999
Q ss_pred CeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 333 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+.|++++|......+.. +..+++|++|+++++ .++.++... ..+|+|++|++++| .+..+
T Consensus 251 ~~L~Ls~n~l~~~~~~~--------------~~~l~~L~~L~L~~n-~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHP--------------FVKMQRLERLYISNN-RLVALNLYG----QPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp SEEECCSSCCCEEESGG--------------GTTCSSCCEEECCSS-CCCEEECSS----SCCTTCCEEECCSS-CCCCC
T ss_pred cEEECCCCcCCCcChhH--------------ccccccCCEEECCCC-cCcccCccc----CCCCCCCEEECCCC-cceec
Confidence 99999999844333332 566899999999986 455554322 56899999999999 77888
Q ss_pred CCCCCCCCCccEEEEcCCc
Q 044264 413 PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c~ 431 (439)
|..+..+++|+.|++++|+
T Consensus 311 ~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CccccccCcCCEEECCCCc
Confidence 8888889999999999985
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=231.90 Aligned_cols=168 Identities=19% Similarity=0.150 Sum_probs=138.1
Q ss_pred EEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccce
Q 044264 81 VKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRY 160 (439)
Q Consensus 81 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 160 (439)
........+|..+. +.+++|++++|. +.+..|..|..+++|++|++++ |.+....|..+..+++|++
T Consensus 12 ~~~~~l~~ip~~~~--~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 12 GRSRSFTSIPSGLT--AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKS------SRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTT------SCCCEECTTTTTTCTTCCE
T ss_pred CCCCccccccccCC--CCccEEECcCCc-----cCccChhhhhcCCcccEEECCC------CCcCccChhhccccccCCE
Confidence 34455677887654 789999999998 5666677899999999999999 7755555678999999999
Q ss_pred eecCCCCCccCChh-HhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCccccccCC-cccccCcccccccceee
Q 044264 161 LNLSRLKIEKLPET-LCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVV 237 (439)
Q Consensus 161 L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 237 (439)
|++++|.++.+|+. ++++++|++|++++|.... ..|..++++++|++|++++|.....+| ..+..+++|++|++.+|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99999999988865 9999999999999998332 356779999999999999998666665 57899999999999999
Q ss_pred ccccccccccccccCcceeeeccc
Q 044264 238 GRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
...+..+..++.+++|+.|+++.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECS
T ss_pred cccccChhhhhccccCceEecccC
Confidence 887777777776666666665554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-27 Score=218.11 Aligned_cols=249 Identities=19% Similarity=0.189 Sum_probs=164.2
Q ss_pred CceeEEEEEcCCCC---CcCcccCCCCCeeEEEecC-CCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGA---PFPISFCSVKRLRSLLIDD-NGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP 149 (439)
Q Consensus 74 ~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (439)
.+++.+.+.+.... .+|..+.++++|++|++++ +. +.+.+|..+..+++|++|++++ +.+.+.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~~L~~L~Ls~------n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITH------TNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEE------ECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCCCCCEEECcC------CeeCCcCC
Confidence 45777777776664 4666777777777777774 54 4556666677777777777777 66444666
Q ss_pred cccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccccchhhhhcc-ccceeeccCccccccCCcccccCc
Q 044264 150 KNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKELPQGFGKLI-NLMYLLNRGTESLRYLPAGIERLT 227 (439)
Q Consensus 150 ~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~l~ 227 (439)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|......|..+..++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 66777777777777777766 6666777777777777777764446677777776 777777777766556666666665
Q ss_pred ccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhccc
Q 044264 228 SLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLT 307 (439)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 307 (439)
|+.|++++|...+..+..+..+++|+.|++++|... ..+..+..+++|++|++++|.+...+|.++..++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee---------eecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 777777776666666666667777777777666311 1122255566666666666666544466666666
Q ss_pred CccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCe
Q 044264 308 DLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSV 343 (439)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 343 (439)
+|+.|++++|.+...+|..+.+++|+.|++.+|+.+
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 666666666666656665566666666666666643
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-27 Score=216.08 Aligned_cols=250 Identities=16% Similarity=0.141 Sum_probs=198.4
Q ss_pred CCeeEEEecCCCCChhhHhh--hhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-cCCh
Q 044264 97 KRLRSLLIDDNGDDEFWLTE--VLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-KLPE 173 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~ 173 (439)
.+++.|+++++. +.+ .+|..+..+++|++|+++++ +.+.+.+|..+..+++|++|++++|.++ .+|.
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~L~~L~L~~~-----n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGI-----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEE-----TTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCCCCCeeeCCCC-----CcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 579999999987 555 67888999999999999831 5546678888999999999999999987 8899
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCc-ccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLT-SLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|+++.|...+..+..+..++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 999999999999999985558899999999999999999987668888899988 999999999888877888888887
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCC
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPS 331 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~ 331 (439)
|+.|++++|... ...+..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+...+|. +..+++
T Consensus 199 L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 199 LAFVDLSRNMLE--------GDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp CSEEECCSSEEE--------ECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ccEEECcCCccc--------CcCCHHHhcCCCCCEEECCCCceeee-cCcccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 888888887421 23456677788888888888877665 34466778888888888877656664 777788
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCc
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVL 381 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 381 (439)
|+.|++++|...+.+|. ...+++|+.|++.+++.+
T Consensus 270 L~~L~Ls~N~l~~~ip~---------------~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQ---------------GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCEEECCSSEEEEECCC---------------STTGGGSCGGGTCSSSEE
T ss_pred CCEEECcCCcccccCCC---------------CccccccChHHhcCCCCc
Confidence 88888888774445443 234666667776666533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=236.48 Aligned_cols=313 Identities=18% Similarity=0.145 Sum_probs=241.9
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-cccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~ 156 (439)
.+.........+|. -.+++++|++++|. +....+..|..+++|++|++++ |.....+ |..+.+++
T Consensus 8 ~~dcs~~~L~~vP~---lp~~l~~LdLs~N~-----i~~i~~~~~~~l~~L~~LdLs~------n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ---VLNTTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGS------QYTPLTIDKEAFRNLP 73 (844)
T ss_dssp EEEESCCCSSCCCS---SCTTCCEEEEESCC-----CCEECSSSCSSCCSCSEEEECT------TCCCCEECTTTTSSCT
T ss_pred EEEccCCCCCCCCC---CCCCcCEEECCCCc-----CCccChhHCcccccCeEEeCCC------CCCccccCHHHhcCCC
Confidence 44556667788887 35789999999998 6777788899999999999999 7545555 67899999
Q ss_pred ccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchh--hhhccccceeeccCccccccCC-cccccCcccccc
Q 044264 157 HLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG--FGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRV 232 (439)
Q Consensus 157 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~--i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 232 (439)
+|++|+|++|.++.+ |..++++++|++|++++|......|.. ++++++|++|++++|......+ ..++++++|++|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999999998866 778999999999999999855546654 8999999999999998655433 568999999999
Q ss_pred cceeeccccccccccccc--cCcceeeecccCCcchhccCChHHHHHhCCCCC------CccEEEEeeccCCccCCchhh
Q 044264 233 EKFVVGRGVARSSELENK--KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP------NLKHLGIHQYRGNNVHPHWMM 304 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~l~~~~~ 304 (439)
+++.|......+..+..+ ++|+.|+++.+.... ..+..+..++ .|+.|++++|......+..+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~--------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS--------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC--------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCcccc--------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 999998888788888887 899999999885221 1222233333 389999998854432222221
Q ss_pred ------------------------------------c--ccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeE
Q 044264 305 ------------------------------------S--LTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKR 345 (439)
Q Consensus 305 ------------------------------------~--~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~ 345 (439)
. .++|+.|++++|......+. +..+++|+.|++++|. +..
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~ 304 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INK 304 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCC
Confidence 1 36899999999987766554 8889999999999998 444
Q ss_pred eCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC-CCCCCCCccE
Q 044264 346 VGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQK 424 (439)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~ 424 (439)
++.. .+..+++|++|+++++. +..+. ......+++|+.|++++| .+..++. .+..+++|+.
T Consensus 305 ~~~~-------------~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 305 IADE-------------AFYGLDNLQVLNLSYNL-LGELY---SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp ECTT-------------TTTTCSSCCEEEEESCC-CSCCC---SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCE
T ss_pred CChH-------------HhcCCCCCCEEECCCCC-CCccC---HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCE
Confidence 4332 25678999999999873 33332 122357899999999999 6677654 5778999999
Q ss_pred EEEcCCc
Q 044264 425 LEIWGCP 431 (439)
Q Consensus 425 L~i~~c~ 431 (439)
|++++|.
T Consensus 367 L~Ls~N~ 373 (844)
T 3j0a_A 367 LDLRDNA 373 (844)
T ss_dssp EEEETCC
T ss_pred EECCCCC
Confidence 9999985
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=228.35 Aligned_cols=285 Identities=16% Similarity=0.125 Sum_probs=233.8
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE- 173 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~- 173 (439)
.+++++.+++.++. +....+..+..+++|++|++++ +.+....|..+..+++|++|+|++|.++.+|+
T Consensus 49 ~l~~l~~l~l~~~~-----l~~lp~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST-----MRKLPAALLDSFRQVELLNLND------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE-----ESEECTHHHHHCCCCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCceEEEeeCCC-----CCCcCHHHHccCCCCcEEECCC------CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 46789999999987 5666667789999999999999 77455555689999999999999999988875
Q ss_pred hHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|+.|++++|..... .++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhh
Confidence 56999999999999998 6777765 58999999999999987666667799999999999999877653 3677899
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCc
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSL 332 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 332 (439)
|+.|+++++... .+..+++|+.|++++|.+..+ +..+ .++|+.|++++|.+.. .+.+..+++|
T Consensus 194 L~~L~l~~n~l~-------------~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~-~~~l~~l~~L 256 (597)
T 3oja_B 194 LFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD-TAWLLNYPGL 256 (597)
T ss_dssp CSEEECCSSCCS-------------EEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred hhhhhcccCccc-------------cccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC-ChhhccCCCC
Confidence 999999988422 244567899999999998875 4433 4799999999998764 4568899999
Q ss_pred CeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCC
Q 044264 333 EQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRAL 412 (439)
Q Consensus 333 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l 412 (439)
+.|++++|......+.. +..+++|+.|+++++ .+..++... ..+|+|+.|++++| .+..+
T Consensus 257 ~~L~Ls~N~l~~~~~~~--------------~~~l~~L~~L~Ls~N-~l~~l~~~~----~~l~~L~~L~Ls~N-~l~~i 316 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHP--------------FVKMQRLERLYISNN-RLVALNLYG----QPIPTLKVLDLSHN-HLLHV 316 (597)
T ss_dssp SEEECCSSCCCEEESGG--------------GTTCSSCCEEECTTS-CCCEEECSS----SCCTTCCEEECCSS-CCCCC
T ss_pred CEEECCCCccCCCCHHH--------------hcCccCCCEEECCCC-CCCCCCccc----ccCCCCcEEECCCC-CCCcc
Confidence 99999999844433432 567899999999986 455554322 56899999999999 67789
Q ss_pred CCCCCCCCCccEEEEcCCc
Q 044264 413 PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 413 ~~~l~~~~~L~~L~i~~c~ 431 (439)
|..+..+++|+.|++++|.
T Consensus 317 ~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GGGHHHHTTCSEEECCSSC
T ss_pred CcccccCCCCCEEECCCCC
Confidence 8888889999999999986
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=226.28 Aligned_cols=357 Identities=15% Similarity=0.079 Sum_probs=236.9
Q ss_pred EeeCCCCCccccc-cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcc
Q 044264 59 VEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (439)
+++.+.....++. ....++++.+.++....++ ..+..+++|++|++++|. +....+..|..+++|++|++++
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~- 85 (570)
T 2z63_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTG- 85 (570)
T ss_dssp EECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTT-
T ss_pred EEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcC-
Confidence 4444444444443 5678999999999887774 478899999999999997 5666677899999999999999
Q ss_pred ccccccccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccCcc
Q 044264 137 QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+.+....|..+..+++|++|++++|.++.++. .++++++|++|++++|.... .+|..++++++|++|++++|.
T Consensus 86 -----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 86 -----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp -----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred -----CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 77444455789999999999999999998876 68999999999999998433 478999999999999999987
Q ss_pred ccccCCcccccCccc----ccccceeeccc--------------------------------------------------
Q 044264 215 SLRYLPAGIERLTSL----RRVEKFVVGRG-------------------------------------------------- 240 (439)
Q Consensus 215 ~~~~~~~~~~~l~~L----~~L~l~~~~~~-------------------------------------------------- 240 (439)
.....|..++.+++| +.+++..|...
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 543333334444333 22222222111
Q ss_pred -------------------------------cccccccccccCcceeeecccCCcchhccC-------------ChHHHH
Q 044264 241 -------------------------------VARSSELENKKNLIDLLLYFGHGNEERKRK-------------KDEEVL 276 (439)
Q Consensus 241 -------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~ 276 (439)
+..+..+..+++|+.|+++++......... ....++
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCC
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccC
Confidence 111223344455555555444211000000 000000
Q ss_pred --------------------HhCCCCCCccEEEEeeccCCccC--CchhhcccCccEEeecCCCCCCcCCCCCCcCCcCe
Q 044264 277 --------------------EALQPPPNLKHLGIHQYRGNNVH--PHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQ 334 (439)
Q Consensus 277 --------------------~~l~~~~~L~~L~l~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 334 (439)
.....+++|++|++++|...... +..+..+++|+.|++++|......+.+..+++|+.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 00146789999999999887642 46677999999999999987654444788999999
Q ss_pred eeeccccCeeEeCC-c-cccc----------cCCCCCCCCCCcCCCCcceeeccCCCCc-cccccCCCcccccCccccee
Q 044264 335 LYFYSMGSVKRVGD-E-FLGV----------ESDHGRASSSVVAFPKLKTIQFWDMYVL-KEWDYGDTIKGEIMPRLSSL 401 (439)
Q Consensus 335 L~l~~~~~l~~~~~-~-~~~~----------~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~p~L~~L 401 (439)
|++++|. +...+. . +... .......+..+..+++|++|++++|.-. ..++ .....+++|++|
T Consensus 401 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L 475 (570)
T 2z63_A 401 LDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFL 475 (570)
T ss_dssp EECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEE
T ss_pred EEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch----hhhhcccCCCEE
Confidence 9999987 333322 1 1111 1111123334556677777777666311 0111 122567888888
Q ss_pred eecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 402 CIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 402 ~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
++++|......|..+..+++|+.|++++|.
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 888884333336677788888888888873
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=224.30 Aligned_cols=342 Identities=18% Similarity=0.095 Sum_probs=186.6
Q ss_pred CCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.++....+|. .+..+++|++|++++|. +....+..|..+++|++|++++ |.+....|..
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~ 140 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-----IQKIKNNPFVKQKNLITLDLSH------NGLSSTKLGT 140 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCSCTTTTCTTCCEEECCS------SCCSCCCCCS
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-----cCccChhHccccCCCCEEECCC------CcccccCchh
Confidence 4567777777777766665 46777778888887776 4444555677777788888877 6544445566
Q ss_pred cccccccceeecCCCCCccCChh-Hh--hccCCcEeecCCCCcccccchh------------------------------
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LC--ELYNLQLLNVESCQDLKELPQG------------------------------ 198 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~--~l~~L~~L~l~~~~~~~~l~~~------------------------------ 198 (439)
+..+++|++|++++|.++.+++. +. .+++|++|++++|......|..
T Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~ 220 (680)
T 1ziw_A 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220 (680)
T ss_dssp SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT
T ss_pred hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh
Confidence 67777777777777776665542 22 3466777777666522222222
Q ss_pred ---------------------hhhccc--cceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcce
Q 044264 199 ---------------------FGKLIN--LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLID 255 (439)
Q Consensus 199 ---------------------i~~l~~--L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 255 (439)
+..++. |+.|++++|......|..++.+++|+.|++.+|...+..+..+..+++|+.
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 222222 555555554433333344555555555555555554444455555555555
Q ss_pred eeecccCCcchhccCChHHHHH----hCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCC-------------
Q 044264 256 LLLYFGHGNEERKRKKDEEVLE----ALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCI------------- 318 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~------------- 318 (439)
|+++++...... ....++. .+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 301 L~L~~~~~~~~~---~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 301 LNLKRSFTKQSI---SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp EECTTCBCCC---------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred Eeccchhhhccc---ccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc
Confidence 555443110000 0001111 45567777777777777666545556666666666666553
Q ss_pred ---------------CCCcCCC-CCCcCCcCeeeeccccCeeEeCCccc-cccC----------CCCCCCCCCcCCCCcc
Q 044264 319 ---------------NCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFL-GVES----------DHGRASSSVVAFPKLK 371 (439)
Q Consensus 319 ---------------~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~----------~~~~~~~~~~~l~~L~ 371 (439)
.....+. +..+++|+.|++++|.....++...+ .... .....+..+..+|+|+
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 2222222 55566666666666664443432111 0000 0011122233344444
Q ss_pred eeeccCCCCccccccCCCcccccCcccceeeecccccccCCCC-CCCCCCCccEEEEcCCc
Q 044264 372 TIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 372 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~~c~ 431 (439)
.|+++++. +..+. ..+.....+++|+.|++++| .++.++. .+..+++|+.|++++|.
T Consensus 458 ~L~l~~n~-l~~~~-~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 458 RLMLRRVA-LKNVD-SSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp EEECTTSC-CBCTT-CSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhcccc-ccccc-cCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC
Confidence 44444432 11100 01112245778888888888 5666654 46778899999998884
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=209.43 Aligned_cols=231 Identities=19% Similarity=0.251 Sum_probs=147.8
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
..+.++.|++++ +. +..+|..+..+++|++|++++|.++.+|..++++++|++|++++|. +..+|..+++++
T Consensus 79 ~~~~l~~L~L~~------n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRS------VP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEES------SC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cccceeEEEccC------CC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 357888999988 76 5578888888999999999999988888888899999999999887 568888888999
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|++|++++|.....+|..+... .....+..+++|+.|++++|. ...++..+..++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~---------l~~lp~~l~~l~ 206 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTG---------IRSLPASIANLQ 206 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEEC---------CCCCCGGGGGCT
T ss_pred CCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCC---------cCcchHhhcCCC
Confidence 99999998888777777665430 001123334444444444442 112233344455
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCC
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASS 362 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 362 (439)
+|++|++++|.+... |..+..+++|+.|++++|.....+|. ++.+++|+.|++++|...+.++..
T Consensus 207 ~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------- 272 (328)
T 4fcg_A 207 NLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD------------- 272 (328)
T ss_dssp TCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-------------
T ss_pred CCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-------------
Confidence 555555555555544 44555666666666666655555554 555666666666666555444432
Q ss_pred CCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecc
Q 044264 363 SVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 363 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+..+++|++|++++|..+..++... ..+++|+.+.+..
T Consensus 273 -~~~l~~L~~L~L~~n~~~~~iP~~l----~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 -IHRLTQLEKLDLRGCVNLSRLPSLI----AQLPANCIILVPP 310 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCCCCGGG----GGSCTTCEEECCG
T ss_pred -hhcCCCCCEEeCCCCCchhhccHHH----hhccCceEEeCCH
Confidence 3345666666666665555555433 3455565555554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=217.19 Aligned_cols=274 Identities=19% Similarity=0.157 Sum_probs=215.2
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL 171 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l 171 (439)
.+.++++|++|+++++. +.+ +| .+..+++|++|++++ +. +..+| ++.+++|++|++++|.++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~-----l~~-~~-~l~~l~~L~~L~Ls~------n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-----ITD-MT-GIEKLTGLTKLICTS------NN-ITTLD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp EHHHHTTCCEEECCSSC-----CCC-CT-TGGGCTTCSEEECCS------SC-CSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred ChhHcCCCCEEEccCCC-----ccc-Ch-hhcccCCCCEEEccC------Cc-CCeEc--cccCCCCCEEECcCCCCcee
Confidence 45678999999999997 343 35 488999999999999 76 44454 88999999999999999988
Q ss_pred ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccccccccccc
Q 044264 172 PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKK 251 (439)
Q Consensus 172 p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 251 (439)
| ++++++|++|++++|. +..+| ++.+++|++|++++|.. ..++ ++.+++|+.|++..|...+.. .++.++
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCC
Confidence 6 8899999999999998 66676 88999999999999985 4443 788999999999988655444 588999
Q ss_pred CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCC
Q 044264 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPS 331 (439)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 331 (439)
+|+.|+++++.... ++ +..+++|+.|++++|..... .+..+++|+.|++++|.... +| ++.+++
T Consensus 171 ~L~~L~ls~n~l~~---------l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~ 234 (457)
T 3bz5_A 171 QLTTLDCSFNKITE---------LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQ 234 (457)
T ss_dssp TCCEEECCSSCCCC---------CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTT
T ss_pred cCCEEECCCCccce---------ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCC
Confidence 99999999984322 22 77889999999999998874 37789999999999998766 56 889999
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCC----------cceeeccCCCCccccccCCCcccccCccccee
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPK----------LKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSL 401 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L 401 (439)
|+.|++++|. ++.++. ..+++ |+.|++++|..+..++ ...+++|+.|
T Consensus 235 L~~L~l~~N~-l~~~~~----------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------~~~l~~L~~L 291 (457)
T 3bz5_A 235 LTYFDCSVNP-LTELDV----------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------AEGCRKIKEL 291 (457)
T ss_dssp CSEEECCSSC-CSCCCC----------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE------CTTCTTCCCC
T ss_pred CCEEEeeCCc-CCCcCH----------------HHCCCCCEEeccCCCCCEEECCCCccCCccc------ccccccCCEE
Confidence 9999999997 444432 23444 4555555555444443 2467999999
Q ss_pred eecccccccCCCC--------CCCCCCCccEEEEcCC
Q 044264 402 CIARCPTLRALPD--------HLLQTTTLQKLEIWGC 430 (439)
Q Consensus 402 ~i~~c~~l~~l~~--------~l~~~~~L~~L~i~~c 430 (439)
++++|+.++.+|. .+..+++|+.|++++|
T Consensus 292 ~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 292 DVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred ECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 9999987776653 2445566677766655
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=205.50 Aligned_cols=292 Identities=19% Similarity=0.185 Sum_probs=166.0
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
.++.+.+.......+|..+. ++++.|++++|. +....+..|..+++|++|++++ +.+....|..+..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-----ISELRKDDFKGLQHLYALVLVN------NKISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECGGGSTT
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-----CCccCHhHhhCCCCCcEEECCC------CccCccCHhHhhC
Confidence 46667777777777776653 578888888876 4555566677888888888887 6644444667778
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccc--cCCcccccCccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLR--YLPAGIERLTSLRR 231 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~ 231 (439)
+++|++|++++|.++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.... ..|..+..+ +|+.
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 8888888888888877776654 678888888877 455544 47778888888888776522 344455555 7777
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|+++.|.... ++..+. ++|+.|++++|.... ..+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 177 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~--------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 177 LRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA--------IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC--------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred EECcCCCCCc-cCcccc--CCCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 7776665543 222222 455555555542111 11123444455555555555444432334445555555
Q ss_pred EeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc
Q 044264 312 LTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI 390 (439)
Q Consensus 312 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 390 (439)
|++++|... .+|. +..+++|+.|++++|. ++.++...+.. ..
T Consensus 246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~-----------------------------------~~ 288 (332)
T 2ft3_A 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCP-----------------------------------VG 288 (332)
T ss_dssp EECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSC-----------------------------------SS
T ss_pred EECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHccc-----------------------------------cc
Confidence 555555443 2322 4444455555554444 22222211100 00
Q ss_pred ccccCcccceeeecccccc--cCCCCCCCCCCCccEEEEcCCc
Q 044264 391 KGEIMPRLSSLCIARCPTL--RALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 391 ~~~~~p~L~~L~i~~c~~l--~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
....+++|+.|++.+++.. ...|..+..+++|+.+++++|.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0012466777777777543 2234455667777778777764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=206.04 Aligned_cols=239 Identities=19% Similarity=0.167 Sum_probs=147.8
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
+++.+.+.......+|..+. +.++.|++++|. +....+..|..+++|++|++++ +.+....|..+..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-----ITEIKDGDFKNLKNLHTLILIN------NKISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-----CCCBCTTTTTTCTTCCEEECCS------SCCCCBCTTTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-----CCEeChhhhccCCCCCEEECCC------CcCCeeCHHHhcC
Confidence 55666666666677776543 578888888876 4555555677888888888887 6644444677778
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccc--cCCcccccCccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLR--YLPAGIERLTSLRR 231 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~ 231 (439)
+++|++|++++|.++.+|..+. ++|++|++++|. +..++ ..+..+++|++|++++|.... ..+..+..+++|+.
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 8888888888888877776554 678888888877 44443 457778888888888776432 34455666777777
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|++..|.... ++..+. ++|+.|++++|.... ..+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITK--------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE--------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 7776665442 222222 556666665553111 11234455556666666665555543334555556666
Q ss_pred EeecCCCCCCcCC-CCCCcCCcCeeeecccc
Q 044264 312 LTLSHCINCEHLP-PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 312 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 341 (439)
|++++|... .+| .+..+++|+.|++++|.
T Consensus 245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred EECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 666655544 233 25555556666555554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=201.08 Aligned_cols=290 Identities=19% Similarity=0.180 Sum_probs=221.3
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLC 176 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~ 176 (439)
+++.+++.++. ...+|..+ .+.|++|++++ +.+....+..+..+++|++|++++|.++.+ |..++
T Consensus 32 ~l~~l~~~~~~------l~~lp~~~--~~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLG------LEKVPKDL--PPDTALLDLQN------NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSC------CCSCCCSC--CTTCCEEECCS------SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CCeEEEecCCC------ccccCccC--CCCCeEEECCC------CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence 68889998876 23344322 37899999999 774444445789999999999999998877 77899
Q ss_pred hccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccc--ccccccccccCcc
Q 044264 177 ELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV--ARSSELENKKNLI 254 (439)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~ 254 (439)
++++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|+.|++..|.... ..+..+..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 99999999999998 778887654 799999999998654444568899999999999887753 5667789999999
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC-CCCCcCCcC
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP-PLGKLPSLE 333 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 333 (439)
.|+++++... .++..+ .++|++|++++|.+....+..+..+++|+.|++++|......+ .+..+++|+
T Consensus 175 ~L~l~~n~l~---------~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 175 YIRIADTNIT---------TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp EEECCSSCCC---------SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred EEECCCCccc---------cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 9999988422 222222 3799999999999888767788899999999999998876655 388899999
Q ss_pred eeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc---ccccCcccceeeeccccccc
Q 044264 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI---KGEIMPRLSSLCIARCPTLR 410 (439)
Q Consensus 334 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---~~~~~p~L~~L~i~~c~~l~ 410 (439)
.|++++|. +..++.. +..+++|++|+++++. ++.++..... .....+.|+.|++.+++...
T Consensus 244 ~L~L~~N~-l~~lp~~--------------l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 244 ELHLNNNK-LVKVPGG--------------LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp EEECCSSC-CSSCCTT--------------TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred EEECCCCc-CccCChh--------------hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999997 5455543 5668999999999873 5555433221 11235889999999997532
Q ss_pred -CC-CCCCCCCCCccEEEEcCCc
Q 044264 411 -AL-PDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 411 -~l-~~~l~~~~~L~~L~i~~c~ 431 (439)
.+ |..+..+++|+.+++++|+
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC----
T ss_pred cccCccccccccceeEEEecccC
Confidence 23 4567779999999998874
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=219.20 Aligned_cols=146 Identities=20% Similarity=0.164 Sum_probs=119.8
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAM 135 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 135 (439)
..++.+.....+|. .+..++.+.+..+.+..++ .+|.++++|++|++++|. +....+..|..+++|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-----i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-----CCCcChhHhcCCCCCCEEEccC
Confidence 34555555555554 5678999999999998886 478899999999999997 5666677899999999999999
Q ss_pred cccccccccccccc-cccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccc-ccchhhhhccccceeeccC
Q 044264 136 FQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLK-ELPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~i~~l~~L~~L~l~~ 212 (439)
|. +..+| ..|..+++|++|++++|.++.+|+ .++++++|++|++++|.... ..|..++.+++|++|++++
T Consensus 110 ------N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 110 ------NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp ------CC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred ------Cc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 77 44454 568899999999999999998886 58999999999999998332 4677889999999999998
Q ss_pred ccc
Q 044264 213 TES 215 (439)
Q Consensus 213 ~~~ 215 (439)
|..
T Consensus 183 N~l 185 (635)
T 4g8a_A 183 NKI 185 (635)
T ss_dssp SCC
T ss_pred ccc
Confidence 864
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=200.75 Aligned_cols=232 Identities=20% Similarity=0.196 Sum_probs=196.7
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
..+++.|+++++.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|.. ..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 478999999999999999999999999999999998 568999999999999999999985 488988999999999999
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
++|...+..+..+... .+. ..+..+++|++|++++|.+..+ |..+..+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~------~~~-----------------~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 158 RACPELTELPEPLAST------DAS-----------------GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKI 213 (328)
T ss_dssp EEETTCCCCCSCSEEE------C-C-----------------CCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEE
T ss_pred CCCCCccccChhHhhc------cch-----------------hhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEc
Confidence 9988776666544331 111 1245688999999999998865 889999999999999
Q ss_pred cCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCccccc
Q 044264 315 SHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEI 394 (439)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (439)
++|.+....+.++.+++|+.|++++|...+.++.. +..+++|++|++++|.....++.. ...
T Consensus 214 ~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--------------~~~l~~L~~L~L~~n~~~~~~p~~----~~~ 275 (328)
T 4fcg_A 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI--------------FGGRAPLKRLILKDCSNLLTLPLD----IHR 275 (328)
T ss_dssp ESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC--------------TTCCCCCCEEECTTCTTCCBCCTT----GGG
T ss_pred cCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH--------------hcCCCCCCEEECCCCCchhhcchh----hhc
Confidence 99988754445889999999999999977766553 667899999999999877666533 267
Q ss_pred CcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 395 MPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 395 ~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
+++|+.|++++|+.++.+|..+..+++|+.+++...
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 899999999999999999999999999999988743
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=192.99 Aligned_cols=267 Identities=17% Similarity=0.172 Sum_probs=209.9
Q ss_pred cCCceeEEEEEcCCCCCcC-cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFP-ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
....++.+.+.++....++ ..+.++++|+.|++++|. +....|..|..+++|++|++++ +. +..+|.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~-l~~l~~ 119 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-----ISKIHEKAFSPLRKLQKLYISK------NH-LVEIPP 119 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECGGGSTTCTTCCEEECCS------SC-CCSCCS
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-----cCccCHhHhhCcCCCCEEECCC------Cc-CCccCc
Confidence 3568999999999887774 478899999999999997 5667788899999999999999 77 556776
Q ss_pred ccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccc--ccchhhhhccccceeeccCccccccCCcccccCc
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLK--ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLT 227 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 227 (439)
.+. ++|++|++++|.++.+|. .+..+++|++|++++|.... ..|..+..+ +|++|++++|. +..+|..+. +
T Consensus 120 ~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~ 193 (332)
T 2ft3_A 120 NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--E 193 (332)
T ss_dssp SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--S
T ss_pred ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--C
Confidence 554 899999999999998876 58899999999999998422 456667777 99999999998 456776554 7
Q ss_pred ccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhccc
Q 044264 228 SLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLT 307 (439)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 307 (439)
+|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++|.+..+ |.++..++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~ 264 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--------IENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLK 264 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC--------CCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCT
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc--------CChhHhhCCCCCCEEECCCCcCeec-ChhhhcCc
Confidence 99999999998887777889999999999999985221 1123567889999999999999876 88899999
Q ss_pred CccEEeecCCCCCCcCCC-CCC------cCCcCeeeeccccCee-EeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 308 DLRILTLSHCINCEHLPP-LGK------LPSLEQLYFYSMGSVK-RVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~-~~~------l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
+|+.|++++|.+....+. +.. .++|+.|++.+|+... .++. ..+..++.|+.++++++
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-------------~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-------------ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-------------GGGTTBCCSTTEEC---
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc-------------ccccccchhhhhhcccc
Confidence 999999999987644332 322 4678999999987321 1111 12455677777777665
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=198.12 Aligned_cols=310 Identities=20% Similarity=0.224 Sum_probs=193.8
Q ss_pred EeeCCCCCccccccCCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccc
Q 044264 59 VEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQM 138 (439)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 138 (439)
.+..+.....++....+++.+.+..+....+|.. .++|+.|++++|. +.+ ++. ..++|++|++++
T Consensus 76 L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-----l~~-l~~---~~~~L~~L~L~~--- 140 (454)
T 1jl5_A 76 LELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-----LKA-LSD---LPPLLEYLGVSN--- 140 (454)
T ss_dssp EECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-----CSC-CCS---CCTTCCEEECCS---
T ss_pred EEecCCccccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-----cCc-ccC---CCCCCCEEECcC---
Confidence 3444444445555667889998888888777753 3788999998886 222 221 126899999988
Q ss_pred ccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccccc
Q 044264 139 WSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY 218 (439)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~ 218 (439)
|. +..+| .++.+++|++|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.. ..
T Consensus 141 ---n~-l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l-~~ 209 (454)
T 1jl5_A 141 ---NQ-LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL-KK 209 (454)
T ss_dssp ---SC-CSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SS
T ss_pred ---CC-CCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC-Cc
Confidence 66 44577 4888999999999999888887643 588999999887 66677 588899999999988874 44
Q ss_pred CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc
Q 044264 219 LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV 298 (439)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 298 (439)
+|.. .++|+.|++++|... .++ .++.+++|+.|++++|... .++ ..+++|++|++++|....+
T Consensus 210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~---------~l~---~~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK---------TLP---DLPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS---------SCC---SCCTTCCEEECCSSCCSCC
T ss_pred CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC---------ccc---ccccccCEEECCCCccccc
Confidence 5543 258888888888765 444 4888888999998887422 111 1246788888888877764
Q ss_pred CCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCcc-------ccccCCCCCCCCCCcCCCCcc
Q 044264 299 HPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEF-------LGVESDHGRASSSVVAFPKLK 371 (439)
Q Consensus 299 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~l~~L~ 371 (439)
|.. +++|+.|++++|.... ++.+ .++|+.|++++|. +..++... +..+...+ . -..+++|+
T Consensus 273 -~~~---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~-l---p~~~~~L~ 340 (454)
T 1jl5_A 273 -PEL---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIE-L---PALPPRLE 340 (454)
T ss_dssp -CCC---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSC-C---CCCCTTCC
T ss_pred -Ccc---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCcccCCcCcCCEEECCCCcccc-c---cccCCcCC
Confidence 543 3677888888776543 2211 1456666666554 22222110 00000000 0 11257788
Q ss_pred eeeccCCCCccccccCCCcccccCcccceeeeccccccc--CCCCCCCCC-------------CCccEEEEcCCc
Q 044264 372 TIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLR--ALPDHLLQT-------------TTLQKLEIWGCP 431 (439)
Q Consensus 372 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~--~l~~~l~~~-------------~~L~~L~i~~c~ 431 (439)
.|+++++ .++.++. .+++|+.|++++|+... .+|..+..+ ++|+.|++++|+
T Consensus 341 ~L~L~~N-~l~~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 341 RLIASFN-HLAEVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EEECCSS-CCSCCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred EEECCCC-ccccccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 8888776 3444332 46888888888885434 466666655 788888888875
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=193.65 Aligned_cols=242 Identities=20% Similarity=0.152 Sum_probs=165.7
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccc--cccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI--KEIPKNIEKL 155 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~l 155 (439)
.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ +.+. ...+..+..+
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-----l~~i~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSS------NGLSFKGCCSQSDFGT 77 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC-----CCCCCTTTTTTCTTCSEEECCS------SCCCEEEEEEHHHHSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc-----cCccCHhHhhccccCCEEECCC------CccCcccCcccccccc
Confidence 44555555667776543 578888888876 4444444567888888888887 5522 2224556677
Q ss_pred cccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc--hhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 156 VHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP--QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
++|++|++++|.++.+|..+..+++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 88888888888888887777788888888888877 55554 3577888888888888876555566677778888888
Q ss_pred ceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 234 KFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 234 l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
+.+|...+ ..+..+..+++|+.|++++|... ...+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcC--------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 77776654 45666777777777777776321 1113455667777777777777766534456677777777
Q ss_pred eecCCCCCCcCCC-CCCcC-CcCeeeecccc
Q 044264 313 TLSHCINCEHLPP-LGKLP-SLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~-~L~~L~l~~~~ 341 (439)
++++|......+. +..++ +|+.|++++|+
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777776655553 56664 77777777776
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=196.05 Aligned_cols=264 Identities=18% Similarity=0.181 Sum_probs=203.3
Q ss_pred EEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccc
Q 044264 79 SMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158 (439)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 158 (439)
..........+|..+. ++|++|++++|. +....+..+..+++|++|++++ +.+....+..+..+++|
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR-----ITYISNSDLQRCVNLQALVLTS------NGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTT------SCCCEECTTTTTTCTTC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc-----CcccCHHHhccCCCCCEEECCC------CccCccCHhhcCCCCCC
Confidence 4455666778887654 589999999987 5555555789999999999999 77444456678999999
Q ss_pred ceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch--hhhhccccceeeccCccccccC-CcccccCcccccccc
Q 044264 159 RYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRYL-PAGIERLTSLRRVEK 234 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l 234 (439)
++|++++|.++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|.....+ +..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 9999999999999876 8899999999999998 667776 6889999999999998645554 467889999999999
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHH-HhCCCCCCccEEEEeeccCCccCCchhh---cccCcc
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVL-EALQPPPNLKHLGIHQYRGNNVHPHWMM---SLTDLR 310 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~l~~~~~---~~~~L~ 310 (439)
.+|......+..+..+++|+.|+++++.. ..++ ..+..+++|++|++++|......+..+. ..+.++
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l---------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQH---------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCS---------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCcc---------ccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 99988877788899999999999998842 2222 2234578999999999988775333332 466788
Q ss_pred EEeecCCCCCC----cCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 311 ILTLSHCINCE----HLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 311 ~L~l~~~~~~~----~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
.++++++.... .+|. +..+++|+.|++++|. ++.++... +..+++|++|++++++
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~-------------~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGI-------------FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTT-------------TTTCTTCCEEECCSSC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHH-------------HhcCCCCCEEEeeCCC
Confidence 88888776543 2332 6678889999998887 55555432 3568889999998874
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=201.21 Aligned_cols=226 Identities=19% Similarity=0.136 Sum_probs=109.6
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCce-------------eEEeCCccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCL-------------RALDFAMFQMW 139 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~ 139 (439)
...++.+.+.......+|..+.++++|+.|++++|. +.+.+|..++.+++| +.|++++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~---- 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE-----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN---- 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHH-----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc-----ccccCCcccccchhcchhhhhhhhccCCCEEEecC----
Confidence 356888888888888899999999999999999875 677778777777664 7888887
Q ss_pred cccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccC
Q 044264 140 SWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYL 219 (439)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~ 219 (439)
+. ...+|.. .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.. ..+
T Consensus 81 --~~-l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l-~~l 146 (454)
T 1jl5_A 81 --LG-LSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQL-EKL 146 (454)
T ss_dssp --SC-CSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCC-SSC
T ss_pred --Cc-cccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCC-CCC
Confidence 55 4444442 35677777777776666643 2556666666654 3333321 14566666655553 234
Q ss_pred CcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccC
Q 044264 220 PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVH 299 (439)
Q Consensus 220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 299 (439)
| .++.+++|++|++++|...+ ++.. .++|+.|++++|... .++ .+..+++|++|++++|.....
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~---------~l~-~~~~l~~L~~L~l~~N~l~~l- 210 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE---------ELP-ELQNLPFLTAIYADNNSLKKL- 210 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS---------SCC-CCTTCTTCCEEECCSSCCSSC-
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC---------cCc-cccCCCCCCEEECCCCcCCcC-
Confidence 4 35555666666655554432 2211 135555555554211 111 344555555555555554442
Q ss_pred CchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 300 PHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 300 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|.. .++|+.|++++|... .+|.++.+++|+.|++++|.
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred CCC---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc
Confidence 322 135555555555443 34444555555555555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-23 Score=188.29 Aligned_cols=222 Identities=17% Similarity=0.119 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+.+.........+|..+ .++++.|+++++. +....+..|..+++|++|++++ +.+....|..+..++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHS------NVLARIDAAAFTGLA 80 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-----CCccCHHHcccCCCCCEEECCC------CccceeCHhhcCCcc
Confidence 44555555666666544 3578888888876 4555556677888888888887 664444466777888
Q ss_pred ccceeecCCCC-CccC-ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 157 HLRYLNLSRLK-IEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 157 ~L~~L~L~~~~-~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
+|++|++++|. ++.+ |..+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 88888888886 7766 556777888888888887733333556777888888888877643333334666777777777
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
++|......+..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVA--------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCCcccccCHHHhcCccccCEEECCCCccc--------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 666555433334555555555555554211 111233344444444444444444432223444444444444
Q ss_pred cCCCC
Q 044264 315 SHCIN 319 (439)
Q Consensus 315 ~~~~~ 319 (439)
++|..
T Consensus 233 ~~N~~ 237 (285)
T 1ozn_A 233 NDNPW 237 (285)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 44433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=195.85 Aligned_cols=242 Identities=18% Similarity=0.143 Sum_probs=197.9
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
.+.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ |.+....+..+..+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-----IQMIQADTFRHLHHLEVLQLGR------NSIRQIEVGAFNGL 122 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc-----CceECHHHcCCCCCCCEEECCC------CccCCcChhhccCc
Confidence 4556666667788887654 689999999987 6667778899999999999999 77555556778899
Q ss_pred cccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCc-ccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 232 (439)
++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|. .+.++++|+.|++++|..+..++. .+..+++|+.|
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 9999999999999988764 7889999999999998 556654 688999999999999877777664 47889999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
++++|..... ..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 202 ~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 202 NLGMCNIKDM--PNLTPLVGLEELEMSGNHFP--------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp ECTTSCCSSC--CCCTTCTTCCEEECTTSCCS--------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ECCCCccccc--ccccccccccEEECcCCcCc--------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 9998877543 45888999999999988522 2225668889999999999999888767778899999999
Q ss_pred eecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
++++|.+....+. +..+++|+.|++++|+
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 9999977654444 7889999999999887
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=193.91 Aligned_cols=242 Identities=18% Similarity=0.153 Sum_probs=193.2
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
.+.+.........+|..+. ++++.|++++|. +....+..|..+++|++|++++ |.+....+..+..+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ-----IQIIKVNSFKHLRHLEILQLSR------NHIRTIEIGAFNGL 111 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC-----CCEECTTTTSSCSSCCEEECCS------SCCCEECGGGGTTC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-----CCeeCHHHhhCCCCCCEEECCC------CcCCccChhhccCC
Confidence 4456666777788887664 689999999987 5666667789999999999998 77444455678889
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCc-ccccCcccccc
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRRV 232 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 232 (439)
++|++|+|++|.++.+|. .+..+++|++|++++|. +..++. .+..+++|++|++++|.....++. .+..+++|+.|
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 999999999999988876 58889999999999998 555554 688999999999998776666654 57889999999
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
++++|.... + ..+..+++|+.|++++|... ...+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 191 ~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 191 NLAMCNLRE-I-PNLTPLIKLDELDLSGNHLS--------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp ECTTSCCSS-C-CCCTTCSSCCEEECTTSCCC--------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCcCcc-c-cccCCCcccCEEECCCCccC--------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 998887653 2 35788899999999988422 1224567888999999999998888767778889999999
Q ss_pred eecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 313 TLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
++++|.+....+. +..+++|+.|++++|+
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999977654444 7888999999999887
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-24 Score=212.82 Aligned_cols=332 Identities=17% Similarity=0.114 Sum_probs=219.7
Q ss_pred CCceeEEEEEcCCCC-----CcCcccCCCCCeeEEEecCCCCChhhHhhh-hhHhhhcCC----ceeEEeCCcccccccc
Q 044264 73 GQNVRHSMVKLGKGA-----PFPISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELT----CLRALDFAMFQMWSWN 142 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~----~L~~L~l~~~~~~~~~ 142 (439)
.++++.+.+..+... .++..+..+++|++|++++|. +... ....+..++ +|++|++++ |
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~------n 95 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQN------C 95 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTT------S
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccC------C
Confidence 456888899888875 446667788999999999987 3333 223334455 699999998 5
Q ss_pred ccc----cccccccccccccceeecCCCCCccC-ChhHhh-----ccCCcEeecCCCCccc----ccchhhhhcccccee
Q 044264 143 GFI----KEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCE-----LYNLQLLNVESCQDLK----ELPQGFGKLINLMYL 208 (439)
Q Consensus 143 ~~~----~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~-----l~~L~~L~l~~~~~~~----~l~~~i~~l~~L~~L 208 (439)
.+. ..++..+..+++|++|++++|.++.. +..+.. .++|++|++++|.... .++..+..+++|++|
T Consensus 96 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 96 CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE
Confidence 533 24677788899999999999987632 223322 4579999999987433 245567788999999
Q ss_pred eccCccccccCCcccc-----cCcccccccceeeccccc----cccccccccCcceeeecccCCcchhccCChHHH-HHh
Q 044264 209 LNRGTESLRYLPAGIE-----RLTSLRRVEKFVVGRGVA----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEV-LEA 278 (439)
Q Consensus 209 ~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~ 278 (439)
++++|......+..+. ..++|++|++++|..... ++..+..+++|+.|+++++..... ....+ ...
T Consensus 176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----~~~~l~~~~ 251 (461)
T 1z7x_W 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV----GMAELCPGL 251 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH----HHHHHHHHH
T ss_pred ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH----HHHHHHHHH
Confidence 9999875333222232 256899999988877653 456677889999999988842110 11112 233
Q ss_pred CCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCCCcCC----C--CCCcCCcCeeeeccccCeeEeCC
Q 044264 279 LQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINCEHLP----P--LGKLPSLEQLYFYSMGSVKRVGD 348 (439)
Q Consensus 279 l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~----~--~~~l~~L~~L~l~~~~~l~~~~~ 348 (439)
...+++|++|++++|.+... ++..+..+++|+.|++++|......+ . ....++|+.|++++|. +.....
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 330 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC 330 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence 44688999999999877762 25566678999999999987643211 1 2234689999999887 322111
Q ss_pred ccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCc--ccccCcccceeeeccccccc-----CCCCCCCCCCC
Q 044264 349 EFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTI--KGEIMPRLSSLCIARCPTLR-----ALPDHLLQTTT 421 (439)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~p~L~~L~i~~c~~l~-----~l~~~l~~~~~ 421 (439)
..+. ..+..+++|++|+++++ .+.+....... .....++|++|++++| .++ .+|..+..+++
T Consensus 331 ~~l~---------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 331 SHFS---------SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp HHHH---------HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred HHHH---------HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence 1111 01345688899998887 34332211000 0012568888888888 444 56666677888
Q ss_pred ccEEEEcCCc
Q 044264 422 LQKLEIWGCP 431 (439)
Q Consensus 422 L~~L~i~~c~ 431 (439)
|+.|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 8888888885
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=185.93 Aligned_cols=243 Identities=18% Similarity=0.154 Sum_probs=191.5
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc-cccccccceeecCCCCCccC---ChhH
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-IEKLVHLRYLNLSRLKIEKL---PETL 175 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~l---p~~i 175 (439)
+.++..++. ...+|.. -.++|++|++++ +. +..+|.. +..+++|++|++++|.++.+ |..+
T Consensus 10 ~~l~c~~~~------l~~ip~~--~~~~l~~L~L~~------n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKG------LTSVPTG--IPSSATRLELES------NK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSC------CSSCCSC--CCTTCCEEECCS------SC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCC------cccCCCC--CCCCCCEEECCC------Cc-cCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 456666654 2334432 236899999999 77 4556654 68999999999999998755 6778
Q ss_pred hhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC-cccccCcccccccceeeccccccccccccccCcc
Q 044264 176 CELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254 (439)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 254 (439)
..+++|++|++++|. +..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|+
T Consensus 75 ~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 889999999999998 77788889999999999999998543322 4688999999999999988777788899999999
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC-CCCCcCCcC
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP-PLGKLPSLE 333 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 333 (439)
.|+++++.... ...+..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+ .+..+++|+
T Consensus 154 ~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 154 VLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp EEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred EEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 99999884211 1245678889999999999999888767788899999999999998766544 378899999
Q ss_pred eeeeccccCeeEeCCccccccCCCCCCCCCCcCCC-CcceeeccCCC
Q 044264 334 QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFP-KLKTIQFWDMY 379 (439)
Q Consensus 334 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 379 (439)
.|++++|......+.. +..+| +|++|++++++
T Consensus 227 ~L~L~~N~l~~~~~~~--------------~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQE--------------LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EEECTTSCCCBCSSSS--------------CCCCCTTCCEEECTTCC
T ss_pred EeECCCCCCcccCHHH--------------HHhhhccCCEEEccCCC
Confidence 9999999844332222 44564 89999999874
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-23 Score=194.34 Aligned_cols=250 Identities=14% Similarity=0.067 Sum_probs=108.8
Q ss_pred hhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
....+..+++|++|++++ +.+....|..+..+++|++|++++|.++.+++ +..+++|++|++++|. +..++
T Consensus 26 ~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTT------SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred HHHHhccCCCCCEEECcC------CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 333344444455555554 43222223344445555555555555443333 4444555555555544 33322
Q ss_pred hhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHH
Q 044264 198 GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLE 277 (439)
Q Consensus 198 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 277 (439)
..++|++|++++|... .++. ..+++|+.|++++|......+..++.+++|+.|++++|.... ..+.
T Consensus 97 ---~~~~L~~L~l~~n~l~-~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~ 162 (317)
T 3o53_A 97 ---VGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFA 162 (317)
T ss_dssp ---ECTTCCEEECCSSCCS-EEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------EEGG
T ss_pred ---CCCCcCEEECCCCccC-CcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------ccHH
Confidence 2245555555544422 1111 123445555555544444444444455555555555442111 0011
Q ss_pred hC-CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCC
Q 044264 278 AL-QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESD 356 (439)
Q Consensus 278 ~l-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 356 (439)
.+ ..+++|++|++++|.+... +. ...+++|+.|++++|......+.+..+++|+.|++++|. +..++..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~------- 232 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA------- 232 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-------
T ss_pred HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-------
Confidence 11 2344555555555555443 21 223555555555555444332334455555555555554 3334332
Q ss_pred CCCCCCCCcCCCCcceeeccCCCCc-cccccCCCcccccCcccceeeecccccccC
Q 044264 357 HGRASSSVVAFPKLKTIQFWDMYVL-KEWDYGDTIKGEIMPRLSSLCIARCPTLRA 411 (439)
Q Consensus 357 ~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~ 411 (439)
+..+++|+.|++++++-. ..++ .....+++|+.|++.++..++.
T Consensus 233 -------~~~l~~L~~L~l~~N~~~~~~~~----~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 233 -------LRFSQNLEHFDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -------CCCCTTCCEEECTTCCCBHHHHH----HHHHTCHHHHHHHHHHHHHHHS
T ss_pred -------hhcCCCCCEEEccCCCccCcCHH----HHHhccccceEEECCCchhccC
Confidence 233455555555554321 0100 0112345556666555554443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=189.02 Aligned_cols=265 Identities=16% Similarity=0.177 Sum_probs=207.8
Q ss_pred eeCCCCCccccc-cCCceeEEEEEcCCCCCcCc-ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccc
Q 044264 60 EIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPI-SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQ 137 (439)
Q Consensus 60 ~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 137 (439)
+..+.....++. ....++.+.+.++....++. .+.++++|+.|++++|. +....+..|..+++|++|++++
T Consensus 37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~-- 109 (353)
T 2z80_A 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-----INTIEEDSFSSLGSLEHLDLSY-- 109 (353)
T ss_dssp ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCS--
T ss_pred eCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-----cCccCHhhcCCCCCCCEEECCC--
Confidence 333333333433 45689999999999888876 78899999999999997 5666677799999999999999
Q ss_pred cccccccccccccc-cccccccceeecCCCCCccCCh--hHhhccCCcEeecCCCCccccc-chhhhhccccceeeccCc
Q 044264 138 MWSWNGFIKEIPKN-IEKLVHLRYLNLSRLKIEKLPE--TLCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 138 ~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~ 213 (439)
|. +..++.. +..+++|++|++++|.++.+|. .+.++++|++|++++|.....+ +..++.+++|++|++++|
T Consensus 110 ----n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 110 ----NY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ----SC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ----Cc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 77 4455544 8899999999999999999987 7889999999999999546655 457899999999999999
Q ss_pred cccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 214 ESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
......|..+..+++|++|++.+|.........+..+++|+.|+++++..... .............++.+++.++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF-----HFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC-----CCC------CCCCCCEEEEESC
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc-----cccccccccccchhhccccccc
Confidence 87666688899999999999999887544444456789999999999853220 0001112345677889999887
Q ss_pred cCCc----cCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccC
Q 044264 294 RGNN----VHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGS 342 (439)
Q Consensus 294 ~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~ 342 (439)
.... .+|.++..+++|+.|++++|... .+|. ++.+++|++|++++|+.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 7655 12667889999999999999877 4554 58999999999999973
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=198.39 Aligned_cols=145 Identities=21% Similarity=0.103 Sum_probs=119.4
Q ss_pred EcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccccee
Q 044264 82 KLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYL 161 (439)
Q Consensus 82 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 161 (439)
.+.....+|..+. +.+++|++++|. +....+..|..+++|++|+|++ |.+....+..|.++++|++|
T Consensus 39 ~~~~l~~vP~~lp--~~~~~LdLs~N~-----i~~l~~~~f~~l~~L~~L~Ls~------N~i~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 39 MELNFYKIPDNLP--FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTT------CCCCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCCCCC--cCCCEEEeeCCC-----CCCCCHHHHhCCCCCCEEECCC------CcCCCcChhHhcCCCCCCEE
Confidence 3445578887664 479999999998 6666777899999999999999 77333345568999999999
Q ss_pred ecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccc-cCCcccccCcccccccceeec
Q 044264 162 NLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 162 ~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 238 (439)
+|++|.++.+|+ .+.++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|+++.|.
T Consensus 106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999999985 57999999999999998 666665 58999999999999998533 456778889999999988765
Q ss_pred cc
Q 044264 239 RG 240 (439)
Q Consensus 239 ~~ 240 (439)
..
T Consensus 185 l~ 186 (635)
T 4g8a_A 185 IQ 186 (635)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=193.54 Aligned_cols=256 Identities=21% Similarity=0.181 Sum_probs=154.5
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
..++.+.+.+.....+|..+. ++|+.|++++|. +. .+|. .+++|++|++++ |. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-----l~-~lp~---~l~~L~~L~Ls~------N~-l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-----LT-SLPA---LPPELRTLEVSG------NQ-LTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-----CS-CCCC---CCTTCCEEEECS------CC-CSCCCC---
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC-----CC-CCCC---cCCCCCEEEcCC------Cc-CCcCCC---
Confidence 457888888888888887665 788888888887 33 3443 567888888888 66 555665
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+++|++|++++|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.. ..+|. .+++|+.|+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~ 167 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELCKLW 167 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEE
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCCEEE
Confidence 67888888888888888876 56788888888887 6667763 47888888888763 44443 234566666
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEe
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILT 313 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 313 (439)
+.+|.... ++ ..+ ++|+.|++++|.+..+ |. .+++|+.|+
T Consensus 168 L~~N~l~~-l~---~~~--------------------------------~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~ 207 (622)
T 3g06_A 168 AYNNQLTS-LP---MLP--------------------------------SGLQELSVSDNQLASL-PT---LPSELYKLW 207 (622)
T ss_dssp CCSSCCSC-CC---CCC--------------------------------TTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred CCCCCCCC-Cc---ccC--------------------------------CCCcEEECCCCCCCCC-CC---ccchhhEEE
Confidence 65554432 11 223 4455555555444443 32 124555555
Q ss_pred ecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccc
Q 044264 314 LSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGE 393 (439)
Q Consensus 314 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 393 (439)
+++|.+. .+|. .+++|+.|++++|. ++.++ ..+++|+.|+++++ .++.++.
T Consensus 208 L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp-----------------~~l~~L~~L~Ls~N-~L~~lp~------- 258 (622)
T 3g06_A 208 AYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP-----------------VLPSELKELMVSGN-RLTSLPM------- 258 (622)
T ss_dssp CCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC-----------------CCCTTCCEEECCSS-CCSCCCC-------
T ss_pred CcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC-----------------CCCCcCcEEECCCC-CCCcCCc-------
Confidence 5555433 2222 23455555555553 32222 11355555555554 3333321
Q ss_pred cCcccceeeecccccccCCCCCCCCCCCccEEEEcCCc
Q 044264 394 IMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCP 431 (439)
Q Consensus 394 ~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~ 431 (439)
.+++|+.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 3456666666665 455666555666666666666664
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-23 Score=189.31 Aligned_cols=247 Identities=15% Similarity=0.083 Sum_probs=195.6
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
+..+++|+.|++++|. +....|..+..+++|++|++++ |.+ ...++ +..+++|++|++++|.++.++
T Consensus 30 ~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~l-~~~~~-~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP-----LSQISAADLAPFTKLELLNLSS------NVL-YETLD-LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp HTTGGGCSEEECTTSC-----CCCCCHHHHTTCTTCCEEECTT------SCC-EEEEE-ETTCTTCCEEECCSSEEEEEE
T ss_pred hccCCCCCEEECcCCc-----cCcCCHHHhhCCCcCCEEECCC------CcC-Ccchh-hhhcCCCCEEECcCCcccccc
Confidence 4457789999999997 5667778899999999999999 763 33333 889999999999999988776
Q ss_pred hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeecccccccccc-cccc
Q 044264 173 ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSEL-ENKK 251 (439)
Q Consensus 173 ~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~ 251 (439)
. .++|++|++++|. +..++. ..+++|++|++++|......+..+..+++|+.|++++|......+..+ ..++
T Consensus 97 ~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 V----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp E----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred C----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 3 4899999999998 555543 347899999999998655555678889999999999998877666666 4789
Q ss_pred CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCC
Q 044264 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPS 331 (439)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 331 (439)
+|+.|++++|.... + .....+++|++|++++|.+... |..+..+++|+.|++++|.+....+.+..+++
T Consensus 170 ~L~~L~L~~N~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 170 TLEHLNLQYNFIYD---------V-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp TCCEEECTTSCCCE---------E-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred cCCEEECCCCcCcc---------c-ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 99999999985332 1 2334589999999999999987 77788999999999999987743334888999
Q ss_pred cCeeeeccccCe-eEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCcccc
Q 044264 332 LEQLYFYSMGSV-KRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEW 384 (439)
Q Consensus 332 L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 384 (439)
|+.|++++|+.. ..++. + +..+++|+.|++.++..++..
T Consensus 239 L~~L~l~~N~~~~~~~~~-~-------------~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRD-F-------------FSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCEEECTTCCCBHHHHHH-H-------------HHTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEccCCCccCcCHHH-H-------------HhccccceEEECCCchhccCC
Confidence 999999999854 22222 1 456889999999876655443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=188.19 Aligned_cols=242 Identities=21% Similarity=0.197 Sum_probs=194.0
Q ss_pred eeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC-hhHhh
Q 044264 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCE 177 (439)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~ 177 (439)
.+.++..+.. ...+|..+ .++++.|++++ +.+....+..+..+++|++|+|++|.++.++ ..+.+
T Consensus 45 ~~~v~c~~~~------l~~iP~~~--~~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 45 FSKVICVRKN------LREVPDGI--STNTRLLNLHE------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp SCEEECCSCC------CSSCCSCC--CTTCSEEECCS------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred CCEEEeCCCC------cCcCCCCC--CCCCcEEEccC------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 4566666654 33445433 37899999999 7755555678999999999999999998776 57899
Q ss_pred ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeeccccccc-cccccccCcce
Q 044264 178 LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLID 255 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 255 (439)
+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++..+......+ ..+..+++|+.
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 9999999999998 666665 68999999999999998544444578899999999999866554444 46889999999
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCe
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQ 334 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 334 (439)
|++++|... .+ ..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+. +..+++|+.
T Consensus 190 L~L~~n~l~---------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 190 LNLAMCNLR---------EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp EECTTSCCS---------SC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred ecCCCCcCc---------cc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 999998532 22 2477889999999999999887678899999999999999988766554 889999999
Q ss_pred eeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 335 LYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 335 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|++++|. +..++... +..+++|+.|++++++
T Consensus 260 L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 260 INLAHNN-LTLLPHDL-------------FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSC-CCCCCTTT-------------TSSCTTCCEEECCSSC
T ss_pred EECCCCC-CCccChhH-------------hccccCCCEEEcCCCC
Confidence 9999997 55555432 5568999999998865
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=186.81 Aligned_cols=242 Identities=19% Similarity=0.173 Sum_probs=194.3
Q ss_pred eeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC-hhHhh
Q 044264 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP-ETLCE 177 (439)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~ 177 (439)
.+.++..+.. ...+|..+ .+++++|++++ +.+....+..+..+++|++|+|++|.++.++ ..+.+
T Consensus 56 ~~~v~c~~~~------l~~iP~~~--~~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 56 FSKVVCTRRG------LSEVPQGI--PSNTRYLNLME------NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp SCEEECCSSC------CSSCCSCC--CTTCSEEECCS------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcEEEECCCC------cCccCCCC--CCCccEEECcC------CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 4566666654 23344322 36899999999 8755556778999999999999999998776 67899
Q ss_pred ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeeccccccc-cccccccCcce
Q 044264 178 LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLID 255 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 255 (439)
+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++..+.....++ ..+..+++|+.
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred cccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 9999999999998 666665 58899999999999998543334568899999999999866554444 46889999999
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCe
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQ 334 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~ 334 (439)
|++++|.... + ..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+. +..+++|+.
T Consensus 201 L~L~~n~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 201 LNLGMCNIKD---------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp EECTTSCCSS---------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred EECCCCcccc---------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 9999985322 2 3477889999999999999887788899999999999999988766554 889999999
Q ss_pred eeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 335 LYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 335 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|++++|. +..++... +..+++|+.|++++++
T Consensus 271 L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 271 LNLAHNN-LSSLPHDL-------------FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECCSSC-CSCCCTTS-------------STTCTTCCEEECCSSC
T ss_pred EECCCCc-CCccChHH-------------hccccCCCEEEccCCC
Confidence 9999997 55555432 5568999999999865
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=174.83 Aligned_cols=219 Identities=19% Similarity=0.133 Sum_probs=143.2
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHhhc
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCEL 178 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l 178 (439)
++++..++. ...+|. .-.++|+.|++++ +.+....+..+..+++|++|++++|.++.+ |..+..+
T Consensus 14 ~~~~c~~~~------l~~ip~--~~~~~l~~L~l~~------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQG------LQAVPV--GIPAASQRIFLHG------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSC------CSSCCT--TCCTTCSEEECTT------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred eEEEcCcCC------cccCCc--CCCCCceEEEeeC------CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 455665554 223332 2346788888887 663333345677788888888888887766 5677788
Q ss_pred cCCcEeecCCCCccccc-chhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceee
Q 044264 179 YNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLL 257 (439)
Q Consensus 179 ~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 257 (439)
++|++|++++|..+..+ |..+..+++|++|++++|......|..+..+++|++|++.+|......+..++.+++|+.|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 88888888887644444 55677888888888888775544456677778888888777776655555567777777777
Q ss_pred ecccCCcchhccCChHHHH-HhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCee
Q 044264 258 LYFGHGNEERKRKKDEEVL-EALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQL 335 (439)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 335 (439)
+++|... .++ ..+..+++|++|++++|.+....|..+..+++|+.|++++|.+....+. +..+++|+.|
T Consensus 160 l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 160 LHGNRIS---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp CCSSCCC---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred CCCCccc---------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 7766311 111 2355566777777777766665556666667777777777655543322 5666677777
Q ss_pred eecccc
Q 044264 336 YFYSMG 341 (439)
Q Consensus 336 ~l~~~~ 341 (439)
++++|+
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 776665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-22 Score=183.28 Aligned_cols=177 Identities=18% Similarity=0.118 Sum_probs=93.1
Q ss_pred cceeecCCCCCc--cCChhHh-------hccCCcEeecCCCCcccccchhh--hhccccceeeccCccccccCCcccccC
Q 044264 158 LRYLNLSRLKIE--KLPETLC-------ELYNLQLLNVESCQDLKELPQGF--GKLINLMYLLNRGTESLRYLPAGIERL 226 (439)
Q Consensus 158 L~~L~L~~~~~~--~lp~~i~-------~l~~L~~L~l~~~~~~~~l~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~l 226 (439)
|++|++++|.++ .+|..+. ++++|++|++++|.....+|..+ +.+++|++|++++|.... .|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHH
Confidence 555555555543 2343333 45555555555555333444433 455555555555554322 24444444
Q ss_pred -----cccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhC--CCCCCccEEEEeeccCCcc-
Q 044264 227 -----TSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL--QPPPNLKHLGIHQYRGNNV- 298 (439)
Q Consensus 227 -----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~- 298 (439)
++|++|++++|......+..++.+++|+.|++++|.... ...++..+ ..+++|++|++++|.+...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG------ERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH------HHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc------chHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 555555555555554444556666666666666653110 01123333 6677777777777776632
Q ss_pred -CC-chhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeecccc
Q 044264 299 -HP-HWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 299 -l~-~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~ 341 (439)
++ ..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 01 122356777777777776655442 24455666666666665
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-24 Score=206.00 Aligned_cols=337 Identities=15% Similarity=0.034 Sum_probs=227.4
Q ss_pred CCceeEEEEEcCCCCCcC--cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFP--ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
..+++.+.+.+......+ ..+..+++|+.|++++|..... ....++..+..+++|++|++++ +.+....+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~~~L~~L~Ls~------n~l~~~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPALAELNLRS------NELGDVGVH 74 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTTCCEEECTT------CCCHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhCCCcCEEeCCC------CcCChHHHH
Confidence 356888889888765443 2256789999999999983111 1125677788999999999999 663332222
Q ss_pred cc-cccc----ccceeecCCCCCc-----cCChhHhhccCCcEeecCCCCcccccchhhh-----hccccceeeccCccc
Q 044264 151 NI-EKLV----HLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQDLKELPQGFG-----KLINLMYLLNRGTES 215 (439)
Q Consensus 151 ~~-~~l~----~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~-----~l~~L~~L~l~~~~~ 215 (439)
.+ ..++ +|++|++++|.++ .+|..+..+++|++|++++|......+..+. ..++|++|++++|..
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 22 2344 7999999999977 5678889999999999999984333333333 245799999999975
Q ss_pred ccc----CCcccccCcccccccceeeccccccccccc-----cccCcceeeecccCCcchhccCChHHHHHhCCCCCCcc
Q 044264 216 LRY----LPAGIERLTSLRRVEKFVVGRGVARSSELE-----NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLK 286 (439)
Q Consensus 216 ~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 286 (439)
... ++..+..+++|++|++++|...+.....+. ..++|+.|+++++.... .....++..+..+++|+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS----DNCRDLCGIVASKASLR 230 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT----THHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH----HHHHHHHHHHHhCCCcc
Confidence 442 345567789999999999887654444443 25699999999885322 02234677777899999
Q ss_pred EEEEeeccCCccCC----c-hhhcccCccEEeecCCCCCCc----CCC-CCCcCCcCeeeeccccCeeEeCCccccccCC
Q 044264 287 HLGIHQYRGNNVHP----H-WMMSLTDLRILTLSHCINCEH----LPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESD 356 (439)
Q Consensus 287 ~L~l~~~~~~~~l~----~-~~~~~~~L~~L~l~~~~~~~~----~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 356 (439)
+|++++|....... . ....+++|+.|++++|..... ++. +..+++|+.|++++|. ++..+...+...
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~-- 307 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCET-- 307 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHH--
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHH--
Confidence 99999997654211 1 122588999999999976543 332 5668999999999997 332211111100
Q ss_pred CCCCCCCCcCCCCcceeeccCCCCccccccCC-CcccccCcccceeeecccccccCC-C----CCCC-CCCCccEEEEcC
Q 044264 357 HGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD-TIKGEIMPRLSSLCIARCPTLRAL-P----DHLL-QTTTLQKLEIWG 429 (439)
Q Consensus 357 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~p~L~~L~i~~c~~l~~l-~----~~l~-~~~~L~~L~i~~ 429 (439)
-....++|++|++++|. +....... ......+++|++|++++| .+... + ..+. ..++|+.|++++
T Consensus 308 ------l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 308 ------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp ------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ------hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCC
Confidence 01224799999999985 33221100 011134699999999999 45432 1 2222 267999999999
Q ss_pred Cc
Q 044264 430 CP 431 (439)
Q Consensus 430 c~ 431 (439)
|.
T Consensus 380 n~ 381 (461)
T 1z7x_W 380 CD 381 (461)
T ss_dssp SC
T ss_pred CC
Confidence 95
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=185.12 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=167.1
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 174 (439)
.+++|+.|++++|. +....|..|..+++|++|++++ |.+....| +..+++|++|++++|.++.+|.
T Consensus 32 ~~~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNP-----LSQISAADLAPFTKLELLNLSS------NVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TGGGCCEEECCSSC-----CCCCCGGGGTTCTTCCEEECTT------SCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred cCCCccEEEeeCCc-----CCCCCHHHHhCCCCCCEEEeeC------CCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 34489999999887 5666677788899999999988 66333333 7888999999999998887764
Q ss_pred HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccc-cccCc
Q 044264 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELE-NKKNL 253 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L 253 (439)
.++|++|++++|. +..++. ..+++|+.|++++|......|..++.+++|+.|++++|...+..+..+. .+++|
T Consensus 98 ---~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 98 ---GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ---CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ---CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 3789999999888 555443 3568899999998886655666788889999999988888776777765 78889
Q ss_pred ceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcC
Q 044264 254 IDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLE 333 (439)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 333 (439)
+.|++++|.... + .....+++|+.|++++|.+... |..+..+++|+.|++++|.+....+.+..+++|+
T Consensus 172 ~~L~Ls~N~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 172 EHLNLQYNFIYD---------V-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp CEEECTTSCCCE---------E-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred cEEecCCCcccc---------c-cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 999998885322 1 2234578899999998888876 6668888889999999887765333477888888
Q ss_pred eeeeccccCe
Q 044264 334 QLYFYSMGSV 343 (439)
Q Consensus 334 ~L~l~~~~~l 343 (439)
.|++++|+..
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 8888888743
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-22 Score=182.38 Aligned_cols=243 Identities=17% Similarity=0.106 Sum_probs=171.9
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-ccccccccc-------cccccceeecCCC
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-IKEIPKNIE-------KLVHLRYLNLSRL 166 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~-------~l~~L~~L~L~~~ 166 (439)
..++|+.+++.+|. + .+|..+... |+.|++++ +.+ ...+|..+. .+++|++|++++|
T Consensus 41 ~~~~L~~l~l~~n~-----l--~~p~~~~~~--L~~L~L~~------n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-----E--ADLGQFTDI--IKSLSLKR------LTVRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEECTTHHHHCCT-----T--CCCHHHHHH--HHHCCCCE------EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred cCCCceeEeecccc-----c--ccHHHHHHH--Hhhccccc------ccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 44567777777775 2 444434333 88888887 553 123444443 5788888888888
Q ss_pred CCc-cCChhH--hhccCCcEeecCCCCcccccchhhhhc-----cccceeeccCccccccCCcccccCcccccccceeec
Q 044264 167 KIE-KLPETL--CELYNLQLLNVESCQDLKELPQGFGKL-----INLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 167 ~~~-~lp~~i--~~l~~L~~L~l~~~~~~~~l~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (439)
.++ .+|..+ ..+++|++|++++|. +...|..++.+ ++|++|++++|......|..++.+++|++|++++|.
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 876 677665 788888888888887 55557777777 888888888888655555778888888888888887
Q ss_pred cccc--ccccc--ccccCcceeeecccCCcchhccCChHHHH-HhCCCCCCccEEEEeeccCCccCC-chhhcccCccEE
Q 044264 239 RGVA--RSSEL--ENKKNLIDLLLYFGHGNEERKRKKDEEVL-EALQPPPNLKHLGIHQYRGNNVHP-HWMMSLTDLRIL 312 (439)
Q Consensus 239 ~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L 312 (439)
..+. .+..+ ..+++|+.|++++|.... ...++ ..+..+++|++|++++|.+....| ..+..+++|+.|
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMET------PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCC------HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcc------hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 5443 23333 788999999999885321 12333 344678899999999998887533 345567999999
Q ss_pred eecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 313 TLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 313 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
++++|.+. .+|. +. ++|+.|++++|. ++.++. +..+++|++|+++++
T Consensus 259 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~---------------~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 259 NLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS---------------PDELPQVGNLSLKGN 306 (312)
T ss_dssp ECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC---------------TTTSCEEEEEECTTC
T ss_pred ECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh---------------HhhCCCCCEEeccCC
Confidence 99999876 5554 44 899999999987 444432 445777888888775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-22 Score=203.57 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=91.0
Q ss_pred CCceeEEEEEcCCCCCc-CcccCC-CCC-eeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccc--
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCS-VKR-LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKE-- 147 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 147 (439)
...++.+.+..+..... +..+.. ++. |++|++.+|. ......++.....+++|++|++++ |.+...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~------~~~~~~~~ 181 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEE------SSFSEKDG 181 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE---EEEHHHHHHHHHHCTTCSEEECTT------CEEECCCS
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC---CcCHHHHHHHHhhCCCCCEEECcc------ccccCcch
Confidence 45677777776643211 112222 233 7777777664 112233444455677777777776 332111
Q ss_pred --cccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc-----
Q 044264 148 --IPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES----- 215 (439)
Q Consensus 148 --~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~----- 215 (439)
++.....+++|++|+++++.++ .++..+.++++|+.|++++|. ...+|..+..+++|++|+++....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchH
Confidence 2223345566666666666654 333444556666666666655 444555555555555555542110
Q ss_pred ---------------------cccCCcccccCcccccccceeeccccccc-cccccccCcceeeec
Q 044264 216 ---------------------LRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLIDLLLY 259 (439)
Q Consensus 216 ---------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 259 (439)
...+|..+..+++|++|++++|....... ..+..+++|+.|++.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 12233344556677777776665332222 234556666666665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=182.25 Aligned_cols=251 Identities=20% Similarity=0.190 Sum_probs=194.9
Q ss_pred EEeeCCCCCccccc-cCCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcc
Q 044264 58 TVEIDGREEPFIDS-LGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMF 136 (439)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 136 (439)
..+..+.....++. ...+++.+.+.++....+|. .+++|++|++++|. +. .+|. .+++|++|++++
T Consensus 44 ~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-----l~-~lp~---~l~~L~~L~Ls~- 110 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-----LT-SLPV---LPPGLLELSIFS- 110 (622)
T ss_dssp EEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-----CS-CCCC---CCTTCCEEEECS-
T ss_pred EEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-----CC-cCCC---CCCCCCEEECcC-
Confidence 34444444444443 45789999999999998887 57899999999997 33 3444 779999999999
Q ss_pred ccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccc
Q 044264 137 QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~ 216 (439)
|. +..+|. .+++|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|. +
T Consensus 111 -----N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l 173 (622)
T 3g06_A 111 -----NP-LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-L 173 (622)
T ss_dssp -----CC-CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-C
T ss_pred -----Cc-CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCC-C
Confidence 76 555665 578899999999999999874 4899999999998 677775 45789999999987 4
Q ss_pred ccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCC
Q 044264 217 RYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGN 296 (439)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 296 (439)
..+| ..+++|+.|++++|.... ++. ..++|+.|++++|... .++ ..+++|+.|++++|.+.
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~---------~l~---~~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT---------SLP---ALPSGLKELIVSGNRLT 234 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS---------SCC---CCCTTCCEEECCSSCCS
T ss_pred CCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc---------ccC---CCCCCCCEEEccCCccC
Confidence 5676 457899999999887654 222 3478999999988422 111 23588999999999888
Q ss_pred ccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeecc
Q 044264 297 NVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFW 376 (439)
Q Consensus 297 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 376 (439)
.+ | ..+++|+.|++++|.+. .+|. .+++|+.|++++|. +..+|.. +..+++|+.|+++
T Consensus 235 ~l-p---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~--------------l~~l~~L~~L~L~ 292 (622)
T 3g06_A 235 SL-P---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPES--------------LIHLSSETTVNLE 292 (622)
T ss_dssp CC-C---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGG--------------GGGSCTTCEEECC
T ss_pred cC-C---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHH--------------HhhccccCEEEec
Confidence 75 6 46689999999999765 4555 67899999999997 5566543 5668999999999
Q ss_pred CCC
Q 044264 377 DMY 379 (439)
Q Consensus 377 ~~~ 379 (439)
+++
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-21 Score=187.08 Aligned_cols=242 Identities=13% Similarity=0.061 Sum_probs=186.3
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
...+++|+.|++++ +.+....|..+..+++|++|+|++|.++..++ ++.+++|++|++++|. +..+|.
T Consensus 30 ~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 30 RQSAWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp STTGGGCCEEECCS------SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred cccCCCccEEEeeC------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----
Confidence 33455899999999 77555556789999999999999999987665 8999999999999998 666553
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCC-
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ- 280 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~- 280 (439)
.++|++|++++|.... ++. ..+++|+.|++++|...+..+..++.+++|+.|++++|.... ..+..+.
T Consensus 98 ~~~L~~L~L~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~l~~ 166 (487)
T 3oja_A 98 GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAA 166 (487)
T ss_dssp CTTCCEEECCSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--------EEGGGGGG
T ss_pred CCCcCEEECcCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--------cChHHHhh
Confidence 4899999999998543 332 357899999999999888888889999999999999985322 1233443
Q ss_pred CCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCC
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRA 360 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 360 (439)
.+++|++|++++|.+... +. ...+++|+.|++++|.+....+.+..+++|+.|++++|. +..+|..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~----------- 232 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA----------- 232 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-----------
T ss_pred hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchh-----------
Confidence 688999999999998875 33 446899999999999887655568889999999999988 5556653
Q ss_pred CCCCcCCCCcceeeccCCCCc-cccccCCCcccccCcccceeeecccc
Q 044264 361 SSSVVAFPKLKTIQFWDMYVL-KEWDYGDTIKGEIMPRLSSLCIARCP 407 (439)
Q Consensus 361 ~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~p~L~~L~i~~c~ 407 (439)
+..+++|+.|++++++-. ..++ .....++.|+.+.+..+.
T Consensus 233 ---l~~l~~L~~L~l~~N~l~c~~~~----~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 233 ---LRFSQNLEHFDLRGNGFHCGTLR----DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp ---CCCCTTCCEEECTTCCBCHHHHH----HHHTTCHHHHHHHHHHHH
T ss_pred ---hccCCCCCEEEcCCCCCcCcchH----HHHHhCCCCcEEeccccc
Confidence 456789999999987533 1111 112456778888776443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-22 Score=199.55 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=111.4
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhc-CCc-eeEEeCCccccccccccccccccccccccccceeecCCCCCcc--
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDE-LTC-LRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-- 170 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-- 170 (439)
.+++|++|+++++. +....+..+.. ++. |++|++++|..++ ...++.....+++|++|++++|.++.
T Consensus 110 ~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~~~----~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSGFT----TDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEEEE----HHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCCcC----HHHHHHHHhhCCCCCEEECccccccCcc
Confidence 56777888887775 33333333333 334 7777777632100 11233333467778888887776542
Q ss_pred ---CChhHhhccCCcEeecCCCCcc----cccchhhhhccccceeeccCccccccCCcccccCcccccccceeecc----
Q 044264 171 ---LPETLCELYNLQLLNVESCQDL----KELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR---- 239 (439)
Q Consensus 171 ---lp~~i~~l~~L~~L~l~~~~~~----~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---- 239 (439)
++..+..+++|++|++++|... ..++..+.++++|++|++++|.. ..+|..+..+++|+.|.+..+..
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccch
Confidence 3344566777888888777632 23445556777788888777653 33455555566666665542111
Q ss_pred ----------------------ccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 240 ----------------------GVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 240 ----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
....+..+..+++|++|+++++.. ....+...+..+++|++|++.++....
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l-------~~~~~~~~~~~~~~L~~L~L~~~~~~~ 332 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL-------ETEDHCTLIQKCPNLEVLETRNVIGDR 332 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC-------CHHHHHHHHTTCTTCCEEEEEGGGHHH
T ss_pred HHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC-------CHHHHHHHHHhCcCCCEEeccCccCHH
Confidence 123344455677777777777641 112333445566666666665322211
Q ss_pred cCCchhhcccCccEEeec
Q 044264 298 VHPHWMMSLTDLRILTLS 315 (439)
Q Consensus 298 ~l~~~~~~~~~L~~L~l~ 315 (439)
.++.....+++|++|+++
T Consensus 333 ~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEee
Confidence 112222345555555555
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=166.39 Aligned_cols=156 Identities=20% Similarity=0.123 Sum_probs=107.7
Q ss_pred CCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecC
Q 044264 85 KGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLS 164 (439)
Q Consensus 85 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 164 (439)
....+|..+. +.++.|++++|. +....+..+..+++|++|++++ +.+....+..+..+++|++|+++
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-----CCEECTTTTTTCTTCSEEECTT------CCCCEECTTTTTTCTTCCEEECT
T ss_pred CccccCCCCC--CCccEEECCCCc-----ccccCHhHhccccCCcEEECCC------CcCCccCHHHccCCcCCCEEECC
Confidence 3455666543 468888888876 4555555677888888888888 66333344467788888888888
Q ss_pred CCCCccCC-hhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccc-cCCcccccCcccccccceeecccc
Q 044264 165 RLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLR-YLPAGIERLTSLRRVEKFVVGRGV 241 (439)
Q Consensus 165 ~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 241 (439)
+|.++.++ ..+.++++|++|++++|. +..++. .++.+++|++|++++|.... .+|..+..+++|++|++++|....
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 88877665 467788888888888887 444443 57788888888888877533 256677777777777777776655
Q ss_pred ccccccccccCcc
Q 044264 242 ARSSELENKKNLI 254 (439)
Q Consensus 242 ~~~~~l~~l~~L~ 254 (439)
..+..+..+++|+
T Consensus 164 ~~~~~~~~l~~L~ 176 (276)
T 2z62_A 164 IYCTDLRVLHQMP 176 (276)
T ss_dssp ECGGGGHHHHTCT
T ss_pred CCHHHhhhhhhcc
Confidence 4444555554444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=162.33 Aligned_cols=204 Identities=18% Similarity=0.099 Sum_probs=122.1
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLIN 204 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~ 204 (439)
+.|++|++++ +.+....+..+..+++|++|++++|.++.++. .+.++++|++|++++|......+..+..+++
T Consensus 28 ~~l~~L~ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTT------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCC------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 4688888887 66333333467778888888888888776654 5777888888888887733333456777888
Q ss_pred cceeeccCccccccCCcccccCcccccccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
|++|++++|......+..++.+++|++|++++|.... ..+..++.+++|+.|++++|.... ........+..++
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~ 176 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDLRVLHQMP 176 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-----ECGGGGHHHHTCT
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-----CCHHHhhhhhhcc
Confidence 8888888776543333356777777777777776654 245666677777777776663221 0000011112222
Q ss_pred Ccc-EEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 284 NLK-HLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~-~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
.|. +|++++|.+... +.......+|+.|++++|......+. +..+++|+.|++++|+
T Consensus 177 ~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 222 566666665554 33333344566666666654433322 4556666666666655
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=164.12 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=98.7
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|++|++++|.. ..++. +..+++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCE
Confidence 4444555555555555444444 4445555555555544 33333 244455555555555442 22322 444555555
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|++++|......+ ++.+++|+.|++++|... .++. +..+++|+.|++++|.+... + .+..+++|+.
T Consensus 134 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~---------~~~~-l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 199 (308)
T 1h6u_A 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---------DLTP-LANLSKLTTLKADDNKISDI-S-PLASLPNLIE 199 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCC---------CCGG-GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCE
T ss_pred EECCCCccCcCcc--ccCCCCccEEEccCCcCC---------CChh-hcCCCCCCEEECCCCccCcC-h-hhcCCCCCCE
Confidence 5555444432211 555666666666665311 1112 56677888888888877764 3 3678888888
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeC
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
|++++|.... ++.+..+++|+.|++++|+ +...+
T Consensus 200 L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 200 VHLKNNQISD-VSPLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp EECTTSCCCB-CGGGTTCTTCCEEEEEEEE-EECCC
T ss_pred EEccCCccCc-cccccCCCCCCEEEccCCe-eecCC
Confidence 8888887654 3347778888888888887 44443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-20 Score=179.06 Aligned_cols=243 Identities=16% Similarity=0.090 Sum_probs=162.0
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhh----hhHhhhcCCceeEEeCCccccccccccccccccc-------cccc
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEV----LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN-------IEKL 155 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~~l 155 (439)
..++..+..+++|+.|++++|. +... ++..+..+++|++|++++|.+ +.+...+|.. +..+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~---~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENIASKKDLEIAEFSDIFT---GRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCT---TSCGGGSHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCccEEECCCCC-----CCHHHHHHHHHHHHhCCCccEEeCccccc---CccccchhHHHHHHHHHHhhC
Confidence 4455566677888888888886 3333 344466788888888888432 2222233333 3678
Q ss_pred cccceeecCCCCCcc-----CChhHhhccCCcEeecCCCCcccc----cchhhhhc---------cccceeeccCcccc-
Q 044264 156 VHLRYLNLSRLKIEK-----LPETLCELYNLQLLNVESCQDLKE----LPQGFGKL---------INLMYLLNRGTESL- 216 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~----l~~~i~~l---------~~L~~L~l~~~~~~- 216 (439)
++|++|+|++|.++. +|..+..+++|++|++++|..... ++..+..+ ++|++|++++|...
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 888888888888765 677788888888888888874322 33334444 78888888888753
Q ss_pred ccCC---cccccCcccccccceeeccccc-----cccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEE
Q 044264 217 RYLP---AGIERLTSLRRVEKFVVGRGVA-----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHL 288 (439)
Q Consensus 217 ~~~~---~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 288 (439)
..+| ..+..+++|++|++.+|..... .+..+..+++|+.|++++|.... .....++..+..+++|++|
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALKSWPNLREL 249 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGGGCTTCCEE
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----HHHHHHHHHHccCCCcCEE
Confidence 2233 3456778888888888766532 22267778888888888774110 0125566777788888888
Q ss_pred EEeeccCCcc----CCchhh--cccCccEEeecCCCCCC----cCCC-C-CCcCCcCeeeecccc
Q 044264 289 GIHQYRGNNV----HPHWMM--SLTDLRILTLSHCINCE----HLPP-L-GKLPSLEQLYFYSMG 341 (439)
Q Consensus 289 ~l~~~~~~~~----l~~~~~--~~~~L~~L~l~~~~~~~----~~~~-~-~~l~~L~~L~l~~~~ 341 (439)
++++|.+... ++..+. .+++|+.|++++|.+.. .++. + .++++|+.|++++|.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8888877652 234443 37888888888887665 2443 3 456888888888877
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-19 Score=157.80 Aligned_cols=176 Identities=20% Similarity=0.179 Sum_probs=87.3
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchh-hhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
+|++|++++|.++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 44445555444444442 34444455555554444 3333332 244445555555444422211222344444555544
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
.+|......+..+..+++|+.|+++++.... .....+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCc--------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 4444433333344455555555555542110 00122455666666666666666553344666777777777
Q ss_pred cCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 315 SHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 315 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
++|......+. +..+++|+.|++++|+
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 77765543332 5667777777777765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-21 Score=191.05 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=81.0
Q ss_pred CCceeEEEEEcCCCCCc-CcccC-CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFC-SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
..+++++.+.++..... +..+. .+++|++|++.+|. ......++..+..+++|++|++++|.+.+ .. ...++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~-~~~l~~ 178 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDD-VS-GHWLSH 178 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE---EEEHHHHHHHHHHCTTCCEEECTTCEEEC-CC-GGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC---CCCHHHHHHHHHhCCCCCEEeCcCCccCC-cc-hHHHHH
Confidence 45677777776654221 22222 46788888888773 11222355556678888888888733110 00 112333
Q ss_pred ccccccccceeecCCCC--Cc--cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCc
Q 044264 151 NIEKLVHLRYLNLSRLK--IE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~--~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~ 213 (439)
....+++|++|++++|. ++ .++..+.++++|++|++++|.....+|..+..+++|++|+++.+
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 33466788888888876 21 23333456788888888887545556666777777777765543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-20 Score=172.27 Aligned_cols=149 Identities=16% Similarity=0.092 Sum_probs=91.6
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcC--CceeEEeCCccccccccccccccccccccccccceeecCCCCCcc--CCh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDEL--TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK--LPE 173 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--lp~ 173 (439)
.++.++++++. +. +..+..+ +.++.|++++ +. +...+..+..+++|++|++++|.++. +|.
T Consensus 48 ~~~~l~l~~~~-----~~---~~~~~~~~~~~l~~L~l~~------n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 48 LWQTLDLTGKN-----LH---PDVTGRLLSQGVIAFRCPR------SF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp TSSEEECTTCB-----CC---HHHHHHHHHTTCSEEECTT------CE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred hheeecccccc-----CC---HHHHHhhhhccceEEEcCC------cc-ccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 47778887765 22 3345555 7788888887 65 33333345677888888888887652 667
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccccc--CCcccccCcccccccceee-ccccc-ccccccc
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY--LPAGIERLTSLRRVEKFVV-GRGVA-RSSELEN 249 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~ 249 (439)
.+..+++|++|++++|......+..++.+++|++|++++|..+.. ++..+..+++|++|++.+| ...+. .+..+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 777888888888888874445666777788888888887743331 3344555666666666555 33321 2333444
Q ss_pred cc-Ccceeeeccc
Q 044264 250 KK-NLIDLLLYFG 261 (439)
Q Consensus 250 l~-~L~~L~l~~~ 261 (439)
++ +|++|+++++
T Consensus 193 l~~~L~~L~l~~~ 205 (336)
T 2ast_B 193 VSETITQLNLSGY 205 (336)
T ss_dssp SCTTCCEEECCSC
T ss_pred cccCCCEEEeCCC
Confidence 44 4444444443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-19 Score=160.50 Aligned_cols=180 Identities=23% Similarity=0.196 Sum_probs=91.3
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 230 (439)
+..+++|++|++++|.++.++ .++.+++|++|++++|. +..++. .+..+++|++|++++|......+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 444555555555555554443 44455555555555554 333322 244555555555555543222222344555555
Q ss_pred cccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCcc
Q 044264 231 RVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLR 310 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 310 (439)
+|++.+|......+..++.+++|+.|++++|.... ..+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCc--------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 55555554443333334455555555555542110 1112345566666666666666665344456677777
Q ss_pred EEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeC
Q 044264 311 ILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
.|++++|... +.+++|+.|+++.|.....+|
T Consensus 209 ~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 209 YIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp EEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred EEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 7777776443 345566677666665444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-19 Score=160.47 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=15.8
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCC
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCI 318 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 318 (439)
+++|+.|++++|.+..+ |..+...++|+.|++++|.
T Consensus 171 l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 171 LENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred cCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 34444444444444433 4444444444444444443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-19 Score=166.47 Aligned_cols=229 Identities=18% Similarity=0.082 Sum_probs=138.2
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhh-hhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEV-LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..++.+.+........+..+..+++|++|++++|. +... ++..+..+++|++|++++ +.+....+..+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~~~~~~~~L~~L~L~~------~~l~~~~~~~l 138 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLEG------LRLSDPIVNTL 138 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECTT------CBCCHHHHHHH
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-----cCHHHHHHHHhhCCCCCEEeCcC------cccCHHHHHHH
Confidence 45666666666555555556677788888887775 3333 666677778888888877 55444556667
Q ss_pred ccccccceeecCCC-CCc--cCChhHhhccCCcEeecCCCCcccc--cchhhhhcc-ccceeeccCcc-cc--ccCCccc
Q 044264 153 EKLVHLRYLNLSRL-KIE--KLPETLCELYNLQLLNVESCQDLKE--LPQGFGKLI-NLMYLLNRGTE-SL--RYLPAGI 223 (439)
Q Consensus 153 ~~l~~L~~L~L~~~-~~~--~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~i~~l~-~L~~L~l~~~~-~~--~~~~~~~ 223 (439)
..+++|++|++++| .++ .++..+.++++|++|++++|..+.. ++..+..++ +|++|++++|. .. ..+|..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 77778888888887 465 3666677778888888887722432 566677777 78888887774 12 2344455
Q ss_pred ccCcccccccceeec-cccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCch
Q 044264 224 ERLTSLRRVEKFVVG-RGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHW 302 (439)
Q Consensus 224 ~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~ 302 (439)
..+++|+.|++++|. ..+..+..+..+++|+.|+++++... .......+..+++|++|++++| .. ...
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~-i~---~~~ 287 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-------IPETLLELGEIPTLKTLQVFGI-VP---DGT 287 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-------CGGGGGGGGGCTTCCEEECTTS-SC---TTC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC-------CHHHHHHHhcCCCCCEEeccCc-cC---HHH
Confidence 667777777777666 44455556666666666666665311 1111223445566666666655 11 122
Q ss_pred hhcc-cCccEEeecCCCCCCcCC
Q 044264 303 MMSL-TDLRILTLSHCINCEHLP 324 (439)
Q Consensus 303 ~~~~-~~L~~L~l~~~~~~~~~~ 324 (439)
+..+ ..++.|++++|.+.+..|
T Consensus 288 ~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 288 LQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp HHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHHHHhhCcceEEecccCccccC
Confidence 2222 224444455555544444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=157.15 Aligned_cols=200 Identities=19% Similarity=0.100 Sum_probs=167.5
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.......+|..+. +.++.|++++|. +....+..|..+++|++|++++ +. +..++..
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~------n~-l~~~~~~- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-----LYTFSLATLMPYTRLTQLNLDR------AE-LTKLQVD- 73 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-----CSEEEGGGGTTCTTCCEEECTT------SC-CCEEECC-
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-----CCccCHHHhhcCCCCCEEECCC------Cc-cCcccCC-
Confidence 4568888888888888987764 689999999998 5666778899999999999999 77 5555543
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 78999999999999999999999999999999999998 66665 57899999999999999854433445788999999
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
|++++|.........+..+++|+.|++++|. ...++..+...++|+.|++.+|....
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~---------l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENS---------LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSC---------CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCc---------CCccChhhcccccCCeEEeCCCCccC
Confidence 9999998876666667899999999999984 33456667778899999999987754
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=154.33 Aligned_cols=199 Identities=24% Similarity=0.248 Sum_probs=106.2
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-cccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NIEK 154 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~ 154 (439)
.+.+.+.......+|..+. +.++.|+++++. +....+..|..+++|++|++++ +. +..++. .+..
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~-l~~i~~~~~~~ 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-----LSSLPSKAFHRLTKLRLLYLND------NK-LQTLPAGIFKE 83 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-----CSCCCTTSSSSCTTCCEEECCS------SC-CSCCCTTTTSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC-----CCeeCHHHhcCCCCCCEEECCC------Cc-cCeeChhhhcC
Confidence 3445555555555554433 456666666654 3333334455566666666655 44 223332 2345
Q ss_pred ccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
+++|++|++++|.++.+|. .+..+++|++|++++|. +..++ ..+..+++|++|++++|.
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~------------------ 144 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE------------------ 144 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC------------------
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc------------------
Confidence 5666666666666555543 33555566666665555 33332 234555555555555554
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRIL 312 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 312 (439)
.....+..+..+++|+.|+++++.... ..+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 145 ------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 145 ------LQSLPKGVFDKLTSLKELRLYNNQLKR--------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ------CCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------CCccCHhHccCCcccceeEecCCcCcE--------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 332222334444555555554442110 011235566777777777777776534456778888999
Q ss_pred eecCCCCCC
Q 044264 313 TLSHCINCE 321 (439)
Q Consensus 313 ~l~~~~~~~ 321 (439)
++++|....
T Consensus 211 ~l~~N~~~c 219 (270)
T 2o6q_A 211 QLQENPWDC 219 (270)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeeC
Confidence 998886543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=158.78 Aligned_cols=171 Identities=19% Similarity=0.230 Sum_probs=82.1
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+..+++|++|++++ |. +..++. +..+++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..
T Consensus 59 ~~~l~~L~~L~L~~------n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~ 127 (308)
T 1h6u_A 59 VQYLNNLIGLELKD------NQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAG 127 (308)
T ss_dssp GGGCTTCCEEECCS------SC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTT
T ss_pred hhccCCCCEEEccC------Cc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcC
Confidence 44445555555554 33 222333 444555555555555544443 34445555555555544 333332 444
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCC
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP 281 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 281 (439)
+++|++|++++|.. ..++. +..+++|+.|++++|...+..+ +..+++|+.|++++|.... ++ .+..
T Consensus 128 l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~-~l~~ 193 (308)
T 1h6u_A 128 LSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD---------IS-PLAS 193 (308)
T ss_dssp CTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---------CG-GGGG
T ss_pred CCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc---------Ch-hhcC
Confidence 55555555555442 22222 4445555555555444332111 4555555555555553111 11 1445
Q ss_pred CCCccEEEEeeccCCccCCchhhcccCccEEeecCCCC
Q 044264 282 PPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 282 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 319 (439)
+++|++|++++|.+... + .+..+++|+.|++++|..
T Consensus 194 l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEE
T ss_pred CCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCee
Confidence 56666666666666553 2 355666666666666654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=155.08 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=76.0
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSL 229 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (439)
+..+++|++|++++|.++.++.. ++++++|++|++++|. +..++. .++.+++|++|++++|......+..+..+++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 44445555555555554444332 3444555555555544 223222 24445555555555544222222223445555
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCc
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDL 309 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L 309 (439)
+.|++++|......+..++.+++|+.|++++|... ...+..+..+++|+.|++++|.... .+++|
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l 224 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGI 224 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC--------ccCHHHHhCCcCCCEEEccCCCccc-------cCcHH
Confidence 55555554444333334455555555555554211 1111234555666666666554433 34556
Q ss_pred cEEeecCCCCCCcCCC-CCCcC
Q 044264 310 RILTLSHCINCEHLPP-LGKLP 330 (439)
Q Consensus 310 ~~L~l~~~~~~~~~~~-~~~l~ 330 (439)
+.|+++.|.....+|. ++.++
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHHHHhCCCcccCcccccC
Confidence 6666666665555554 44443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-18 Score=156.08 Aligned_cols=159 Identities=12% Similarity=0.016 Sum_probs=101.0
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc--ccccccceeecCCCCCccC-
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI--EKLVHLRYLNLSRLKIEKL- 171 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~l- 171 (439)
+...++.+.+.++......+... .. +..+++|++|++++ +.+.+..|..+ ..+++|++|++++|.++..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~-~~-~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGA-LR-VLAYSRLKELTLED------LKITGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHH-HH-HHHHSCCCEEEEES------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHH-HH-hcccCceeEEEeeC------CEeccchhhhhhhccCCCCCEEEeecccccchh
Confidence 34457888888876322222222 22 22446799999998 77666677776 8899999999999997742
Q ss_pred C----hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccccc--C--CcccccCcccccccceeecccc--
Q 044264 172 P----ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY--L--PAGIERLTSLRRVEKFVVGRGV-- 241 (439)
Q Consensus 172 p----~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~-- 241 (439)
+ ..+..+++|++|++++|......|..++.+++|++|++++|..... + +..+..+++|++|++++|....
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 2 2344688999999998884444456778888999999988874321 1 1223567777777777665531
Q ss_pred cccc-ccccccCcceeeeccc
Q 044264 242 ARSS-ELENKKNLIDLLLYFG 261 (439)
Q Consensus 242 ~~~~-~l~~l~~L~~L~l~~~ 261 (439)
..+. .++.+++|++|++++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTS
T ss_pred HHHHHHHhcCCCCCEEECCCC
Confidence 1111 1244455555555554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-20 Score=183.53 Aligned_cols=226 Identities=16% Similarity=0.094 Sum_probs=143.8
Q ss_pred CCceeEEEEEcCCCC----CcCc------------ccCCCCCeeEEEecCCCCChhhHhhhhhHhhh-cCCceeEEeCCc
Q 044264 73 GQNVRHSMVKLGKGA----PFPI------------SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD-ELTCLRALDFAM 135 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~----~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~ 135 (439)
..+++.+.+.++... -.|. ....+++|++|+++++. +....+..+. .+++|++|++++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEES
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCC
Confidence 467888988876531 1111 12357899999999987 4444444454 789999999998
Q ss_pred cccccccccccc--cccccccccccceeecCCCCCcc-----CChhHhhccCCcEeecCCCC-cc--cccchhhhhcccc
Q 044264 136 FQMWSWNGFIKE--IPKNIEKLVHLRYLNLSRLKIEK-----LPETLCELYNLQLLNVESCQ-DL--KELPQGFGKLINL 205 (439)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~-~~--~~l~~~i~~l~~L 205 (439)
|..+.. ++..+..+++|++|++++|.++. ++.....+++|+.|++++|. .. ..++..+.++++|
T Consensus 140 ------~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 140 ------CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp ------CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred ------cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 522332 45555689999999999998653 33333467899999999986 11 1233334678999
Q ss_pred ceeeccCccccccCCcccccCcccccccceeecc------------------------------ccccccccccccCcce
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR------------------------------GVARSSELENKKNLID 255 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------------------------~~~~~~~l~~l~~L~~ 255 (439)
++|++++|.....+|..+..+++|+.|++..+.. ...++..+..+++|+.
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence 9999999855555666666777777776443311 0122223346778888
Q ss_pred eeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 256 LLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 256 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|+++++.. ....+...+..+++|++|++.++.....++.....+++|+.|++.+
T Consensus 294 L~L~~~~l-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 294 LNLSYATV-------QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp EECTTCCC-------CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEccCCCC-------CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 88887741 2233445566778888888887622111122223567777777743
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=148.00 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCcceeeccCCCCccccccCCCcccccC-cccceeeecccccccCCCCCCCCCCCccEEEEcCCcc
Q 044264 368 PKLKTIQFWDMYVLKEWDYGDTIKGEIM-PRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGCPN 432 (439)
Q Consensus 368 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c~~ 432 (439)
++|++|+++++..++.++... ...+ ++|++|+++++ .++.+|.. .+++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~---~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDA---FGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTT---TTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHH---hhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence 455555555554344433211 1234 56666666665 45555543 566666666666654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-18 Score=163.15 Aligned_cols=256 Identities=15% Similarity=0.041 Sum_probs=188.0
Q ss_pred CCceeEEEEEcCCCCC-----cCcccCCCCCeeEEEecCCCCChhhHhhh-------hhHhhhcCCceeEEeCCcccccc
Q 044264 73 GQNVRHSMVKLGKGAP-----FPISFCSVKRLRSLLIDDNGDDEFWLTEV-------LPQLFDELTCLRALDFAMFQMWS 140 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~ 140 (439)
...++.+.+.++.... ++..+..+++|++|++++|..+ .+.+. +...+..+++|++|++++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~----- 103 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--RVKDEIPEALRLLLQALLKCPKLHTVRLSD----- 103 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--SCGGGSHHHHHHHHHHHTTCTTCCEEECCS-----
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--ccccchhHHHHHHHHHHhhCCcccEEECCC-----
Confidence 4568888888776643 3445778999999999997521 12222 334457899999999999
Q ss_pred cccccc----ccccccccccccceeecCCCCCc-----cCChhHhhc---------cCCcEeecCCCCcc-cccc---hh
Q 044264 141 WNGFIK----EIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCEL---------YNLQLLNVESCQDL-KELP---QG 198 (439)
Q Consensus 141 ~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~l~---~~ 198 (439)
|.+.. .+|..+..+++|++|+|++|.++ .++..+..+ ++|++|++++|... ..+| ..
T Consensus 104 -n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 -NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp -CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred -CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 66433 47778889999999999999986 334445555 89999999999843 3444 46
Q ss_pred hhhccccceeeccCccccc-----cCCcccccCcccccccceeeccc----cccccccccccCcceeeecccCCcchhcc
Q 044264 199 FGKLINLMYLLNRGTESLR-----YLPAGIERLTSLRRVEKFVVGRG----VARSSELENKKNLIDLLLYFGHGNEERKR 269 (439)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 269 (439)
+..+++|++|++++|.... ..|..+..+++|+.|+++.|... ..++..+..+++|+.|++++|.....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~--- 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR--- 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh---
Confidence 7789999999999997532 23337889999999999999875 55677889999999999999853210
Q ss_pred CChHHHHHhC--CCCCCccEEEEeeccCCc----cCCchh-hcccCccEEeecCCCCCCcCC---C-CCCcCCcCeeeec
Q 044264 270 KKDEEVLEAL--QPPPNLKHLGIHQYRGNN----VHPHWM-MSLTDLRILTLSHCINCEHLP---P-LGKLPSLEQLYFY 338 (439)
Q Consensus 270 ~~~~~~~~~l--~~~~~L~~L~l~~~~~~~----~l~~~~-~~~~~L~~L~l~~~~~~~~~~---~-~~~l~~L~~L~l~ 338 (439)
....++..+ ..+++|++|++++|.+.. .+|..+ ..+++|+.|++++|.+....+ . ...+++++.+.+.
T Consensus 260 -~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 260 -GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp -HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred -hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 112355666 459999999999999887 237776 568999999999998876553 1 2234556555554
Q ss_pred cc
Q 044264 339 SM 340 (439)
Q Consensus 339 ~~ 340 (439)
..
T Consensus 339 ~~ 340 (386)
T 2ca6_A 339 EL 340 (386)
T ss_dssp CC
T ss_pred hc
Confidence 43
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-18 Score=150.48 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCCCCCcc-EEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCC-C-CCCc-CCcCeeeeccccCeeEeCCcccccc
Q 044264 279 LQPPPNLK-HLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLP-P-LGKL-PSLEQLYFYSMGSVKRVGDEFLGVE 354 (439)
Q Consensus 279 l~~~~~L~-~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~ 354 (439)
+..+++|+ +|++++|.+..+ |......++|+.|++++|.....++ . +..+ ++|+.|++++|. ++.++..
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i-~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~----- 223 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSV-QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK----- 223 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEE-CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-----
T ss_pred ccchhcceeEEEcCCCCCccc-CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-----
Confidence 33445555 555555555443 3333333566666666664222332 2 5556 666666666665 3334321
Q ss_pred CCCCCCCCCCcCCCCcceeeccCCCC
Q 044264 355 SDHGRASSSVVAFPKLKTIQFWDMYV 380 (439)
Q Consensus 355 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 380 (439)
.+++|+.|++.++..
T Consensus 224 -----------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 -----------GLEHLKELIARNTWT 238 (239)
T ss_dssp -----------TCTTCSEEECTTC--
T ss_pred -----------HhccCceeeccCccC
Confidence 366667777666543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=152.62 Aligned_cols=230 Identities=15% Similarity=0.123 Sum_probs=157.1
Q ss_pred cccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccC
Q 044264 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYL 219 (439)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~ 219 (439)
+. .+.+|..+ .+++++|+|++|.++.+|. .+.++++|++|++++|...+.+|. .+.++++|+++....++.+..+
T Consensus 19 ~~-Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TT-CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CC-CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 45 56677655 3678999999999999986 578899999999999885566664 4678888876544443334554
Q ss_pred -CcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHH-HhCCCC-CCccEEEEeeccCC
Q 044264 220 -PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVL-EALQPP-PNLKHLGIHQYRGN 296 (439)
Q Consensus 220 -~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~~-~~L~~L~l~~~~~~ 296 (439)
|..+..+++|+.|++.+|.........+....++..|++..+... ..++ ..+..+ ..++.|++++|.+.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i--------~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--------HTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC--------CEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc--------ccccccchhhcchhhhhhcccccccc
Confidence 466788999999999888876555555556666777777553211 1111 122333 45778888888877
Q ss_pred ccCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceee
Q 044264 297 NVHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQ 374 (439)
Q Consensus 297 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 374 (439)
.+ +.......+|+.|++.++...+.+|. +..+++|+.|++++|. ++.+|.. .+.+|+.|.
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~----------------~~~~L~~L~ 229 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY----------------GLENLKKLR 229 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS----------------SCTTCCEEE
T ss_pred CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh----------------hhccchHhh
Confidence 76 55555667788888887666666664 6788888888888876 5555532 356677777
Q ss_pred ccCCCCccccccCCCcccccCcccceeeecc
Q 044264 375 FWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 375 l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+.++.+++.++. ...+++|+.+++.+
T Consensus 230 ~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred hccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 777777766652 24577788777754
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-18 Score=164.71 Aligned_cols=256 Identities=13% Similarity=0.019 Sum_probs=174.3
Q ss_pred EEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc----ccccccc-ccceeecCCCCCccC-ChhH
Q 044264 102 LLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP----KNIEKLV-HLRYLNLSRLKIEKL-PETL 175 (439)
Q Consensus 102 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~l-p~~i 175 (439)
+.++.+. +.+.+|..+...++|++|++++ |.+....+ ..+..++ +|++|++++|.++.. +..+
T Consensus 3 ~~ls~n~-----~~~~~~~~~~~~~~L~~L~Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 3 YKLTLHP-----GSNPVEEFTSIPHGVTSLDLSL------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EECCCCT-----TCCHHHHHHTSCTTCCEEECTT------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred ccccccc-----chHHHHHHHhCCCCceEEEccC------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 4566665 6777888777777899999999 66333333 5677788 899999999998865 4556
Q ss_pred hhc-----cCCcEeecCCCCcccccchhhh----hc-cccceeeccCccccccCCcc----ccc-Ccccccccceeeccc
Q 044264 176 CEL-----YNLQLLNVESCQDLKELPQGFG----KL-INLMYLLNRGTESLRYLPAG----IER-LTSLRRVEKFVVGRG 240 (439)
Q Consensus 176 ~~l-----~~L~~L~l~~~~~~~~l~~~i~----~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~ 240 (439)
..+ ++|++|++++|......+..+. .+ ++|++|++++|......+.. +.. .++|++|++++|...
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 665 9999999999994434444444 44 89999999999864433333 333 369999999998876
Q ss_pred cccc----ccccccc-CcceeeecccCCcchhccCChHHHHHhCCCC-CCccEEEEeeccCCcc----CCchhhc-ccCc
Q 044264 241 VARS----SELENKK-NLIDLLLYFGHGNEERKRKKDEEVLEALQPP-PNLKHLGIHQYRGNNV----HPHWMMS-LTDL 309 (439)
Q Consensus 241 ~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~----l~~~~~~-~~~L 309 (439)
+... ..+..++ +|++|++++|.... .....+...+..+ ++|++|++++|.+... ++..+.. .++|
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLAS----KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCch----hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 5333 3345555 89999999885322 1234455556666 4999999999987662 1344444 4599
Q ss_pred cEEeecCCCCCCcCC-----CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 310 RILTLSHCINCEHLP-----PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 310 ~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
+.|++++|......+ .+..+++|+.|++++|. +..+....... ....+..++.|+.|+++++.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~------l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKA------LGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHH------HHTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHH------HHHHhccCCceEEEecCCCc
Confidence 999999997765332 25778899999999886 22222111000 00114567788888888764
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=154.35 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=148.3
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-ccccccccceeecCCCCC-ccCCh-hHh
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKI-EKLPE-TLC 176 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~-~~lp~-~i~ 176 (439)
++++.+++. ...+|..+ .++++.|+|++ |. +..+|. .|.++++|++|+|++|.+ +.+|. .+.
T Consensus 12 ~~v~C~~~~------Lt~iP~~l--~~~l~~L~Ls~------N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESK------VTEIPSDL--PRNAIELRFVL------TK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTT------CCSCCTTC--CTTCSEEEEES------CC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCC------CCccCcCc--CCCCCEEEccC------Cc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 455666554 23445433 35788888888 76 555654 578888888888888885 45654 467
Q ss_pred hccCCcEeec-CCCCccccc-chhhhhccccceeeccCccccccCC-cccccCcccccccceeeccccc-ccccccccc-
Q 044264 177 ELYNLQLLNV-ESCQDLKEL-PQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGRGVA-RSSELENKK- 251 (439)
Q Consensus 177 ~l~~L~~L~l-~~~~~~~~l-~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~- 251 (439)
++++|..+.. .++. +..+ |..+..+++|++|++++|.. ..+| ..+....++..+++..+..... ....+..+.
T Consensus 77 ~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 77 NLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp SCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred cchhhhhhhcccCCc-ccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 7777766444 4444 5555 45678888888888888874 3333 3344455566666655433322 233455554
Q ss_pred CcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEee-ccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcC
Q 044264 252 NLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQ-YRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLP 330 (439)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 330 (439)
.++.|++++|. ...++.......+|++|.+.+ +....+.+..+..+++|+.|++++|.+. .+|. ..+.
T Consensus 155 ~l~~L~L~~N~---------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~-~~~~ 223 (350)
T 4ay9_X 155 ESVILWLNKNG---------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS-YGLE 223 (350)
T ss_dssp SCEEEECCSSC---------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS-SSCT
T ss_pred hhhhhcccccc---------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh-hhhc
Confidence 57788888773 223334444556788888875 4444442234678888888888888654 3443 3356
Q ss_pred CcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccC
Q 044264 331 SLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWD 377 (439)
Q Consensus 331 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 377 (439)
+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 224 ~L~~L~~l~~~~l~~lP~---------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT---------------LEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCCCCC---------------TTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCcCCC---------------chhCcChhhCcCCC
Confidence 677777777776776664 55678888888764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-17 Score=150.42 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=90.0
Q ss_pred CCcEeecCCCCcccccchhh--hhccccceeeccCccccccCC----cccccCcccccccceeeccccccccccccccCc
Q 044264 180 NLQLLNVESCQDLKELPQGF--GKLINLMYLLNRGTESLRYLP----AGIERLTSLRRVEKFVVGRGVARSSELENKKNL 253 (439)
Q Consensus 180 ~L~~L~l~~~~~~~~l~~~i--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 253 (439)
+|++|++++|......|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444222333333 444444444444444322221 112234444444444444444444444555555
Q ss_pred ceeeecccCCcchhccCChHHHH--HhCCCCCCccEEEEeeccCCccCCc----hhhcccCccEEeecCCCCCCcCCC-C
Q 044264 254 IDLLLYFGHGNEERKRKKDEEVL--EALQPPPNLKHLGIHQYRGNNVHPH----WMMSLTDLRILTLSHCINCEHLPP-L 326 (439)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~-~ 326 (439)
+.|++++|.... ...++ ..+..+++|++|++++|.+... +. .+..+++|++|++++|.+....|. +
T Consensus 172 ~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 172 TSLDLSDNPGLG------ERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CEEECCSCTTCH------HHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CEEECCCCCCcc------chhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 555555542110 01111 1124455566666666555432 22 123556666666666655544332 3
Q ss_pred CCc---CCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeee
Q 044264 327 GKL---PSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCI 403 (439)
Q Consensus 327 ~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i 403 (439)
..+ ++|+.|++++|. ++.+|.. + +++|++|+++++ .++.++.. ..+|+|+.|++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~-l~~lp~~--------------~--~~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~L 301 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAG-LEQVPKG--------------L--PAKLRVLDLSSN-RLNRAPQP-----DELPEVDNLTL 301 (310)
T ss_dssp SSCCCCTTCCCEECCSSC-CCSCCSC--------------C--CSCCSCEECCSC-CCCSCCCT-----TSCCCCSCEEC
T ss_pred HhccCcCcCCEEECCCCC-CCchhhh--------------h--cCCCCEEECCCC-cCCCCchh-----hhCCCccEEEC
Confidence 333 566666666665 3333321 1 256666666654 34444321 24566777777
Q ss_pred cccc
Q 044264 404 ARCP 407 (439)
Q Consensus 404 ~~c~ 407 (439)
++++
T Consensus 302 ~~N~ 305 (310)
T 4glp_A 302 DGNP 305 (310)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 6663
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-18 Score=159.66 Aligned_cols=236 Identities=14% Similarity=0.080 Sum_probs=163.5
Q ss_pred CcccCCCCCeeEEEecCCCCChhhHhhhhh----HhhhcCC-ceeEEeCCccccccccccccccccccccc-----cccc
Q 044264 90 PISFCSVKRLRSLLIDDNGDDEFWLTEVLP----QLFDELT-CLRALDFAMFQMWSWNGFIKEIPKNIEKL-----VHLR 159 (439)
Q Consensus 90 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-----~~L~ 159 (439)
|..+...++|+.|++++|. +....+ ..+..++ +|++|++++ |.+....+..+..+ ++|+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~------N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSG------NSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-----GGGSCHHHHHHHHHTCCTTCCEEECCS------SCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHhCCCCceEEEccCCC-----CChHHHHHHHHHHHhCCCceeEEECcC------CCCCHHHHHHHHHHHhccCCCcc
Confidence 3334445569999999987 454444 6678888 899999999 66444444445554 8999
Q ss_pred eeecCCCCCccCCh-h----Hhhc-cCCcEeecCCCCcccccc-hhhh----h-ccccceeeccCcccccc----CCccc
Q 044264 160 YLNLSRLKIEKLPE-T----LCEL-YNLQLLNVESCQDLKELP-QGFG----K-LINLMYLLNRGTESLRY----LPAGI 223 (439)
Q Consensus 160 ~L~L~~~~~~~lp~-~----i~~l-~~L~~L~l~~~~~~~~l~-~~i~----~-l~~L~~L~l~~~~~~~~----~~~~~ 223 (439)
+|++++|.++..+. . +..+ ++|++|++++|. +...+ ..+. . .++|++|++++|..... ++..+
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999875543 3 4444 899999999998 44433 3333 3 35999999999876432 23334
Q ss_pred ccCc-ccccccceeecccccccccc----ccc-cCcceeeecccCCcchhccCChHHHHHhCCC-CCCccEEEEeeccCC
Q 044264 224 ERLT-SLRRVEKFVVGRGVARSSEL----ENK-KNLIDLLLYFGHGNEERKRKKDEEVLEALQP-PPNLKHLGIHQYRGN 296 (439)
Q Consensus 224 ~~l~-~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~ 296 (439)
..++ +|++|++++|...+..+..+ ..+ ++|+.|++++|.... .....++..+.. .++|++|++++|.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 5555 89999999988766555444 444 599999999885221 123446666655 469999999999887
Q ss_pred ccCC----chhhcccCccEEeecCCCCCCc-------C-CCCCCcCCcCeeeecccc
Q 044264 297 NVHP----HWMMSLTDLRILTLSHCINCEH-------L-PPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 297 ~~l~----~~~~~~~~L~~L~l~~~~~~~~-------~-~~~~~l~~L~~L~l~~~~ 341 (439)
...+ ..+..+++|+.|++++|..... + ..+..+++|+.|++++|.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 6422 2235778999999999873221 1 236678899999999987
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=142.34 Aligned_cols=175 Identities=18% Similarity=0.141 Sum_probs=105.5
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLIN 204 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~ 204 (439)
...+.+++++ +. ...+|..+. +++++|++++|.++.++. .+.++++|++|++++|......+..+..+++
T Consensus 14 ~~~~~l~~~~------~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQG------KS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECTT------CC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCeEEecCC------CC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 3466677776 55 555665443 567777777777766554 5677777777777777633333344667777
Q ss_pred cceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCC
Q 044264 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPN 284 (439)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (439)
|++|++++|......+..+..+++|++|++++|......+. .+..+++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------~~~~l~~ 132 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--------------------------------VFDRLTK 132 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------------TTTTCTT
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--------------------------------HhccCCc
Confidence 77777777764332333445556666665555544322222 2344556
Q ss_pred ccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 285 LKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 285 L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|+
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 66666666666555333566677777777777766544442 6667777777777766
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=141.00 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=124.4
Q ss_pred ceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccc
Q 044264 75 NVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEK 154 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 154 (439)
..+.+.+.+.....+|..+. +.++.|++.+|. +....+..+..+++|++|++++ +.+....+..+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-----LATLSDATFRGLTKLTWLNLDY------NQLQTLSAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTT------SCCCCCCTTTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC-----cCccCHhHhcCcccCCEEECCC------CcCCccCHhHhcc
Confidence 34566777777777877654 578888888887 5666666788888888888888 6644445556788
Q ss_pred ccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCc-ccccCccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPA-GIERLTSLRR 231 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~ 231 (439)
+++|++|++++|.++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|. .+..+++|+.
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQT 159 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCE
Confidence 8888888888888887764 46788888888888887 556655 357788888888888874 34443 5777778888
Q ss_pred ccceeeccccccccccccccCcceeeeccc
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
|++.+|......+..+..+++|+.|++++|
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 887777666554555666666666666655
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=146.06 Aligned_cols=169 Identities=22% Similarity=0.229 Sum_probs=94.0
Q ss_pred hcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 123 DELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
..+++|+.|++++ +. +..++ .+..+++|++|++++|.++.+++ +.++++|++|++++|. +..+|. +..+
T Consensus 43 ~~l~~L~~L~l~~------~~-i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANN------SD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDL 111 (291)
T ss_dssp HHHHTCCEEECTT------SC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTC
T ss_pred hhcCcccEEEccC------CC-cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccC
Confidence 3455566666665 44 33333 25556666666666666665554 5666666666666665 444443 5566
Q ss_pred cccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCC
Q 044264 203 INLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPP 282 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 282 (439)
++|++|++++|.. ..+ ..+..+++|+.|++++|..... ..+..+
T Consensus 112 ~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~l~~~----------------------------------~~l~~l 155 (291)
T 1h6t_A 112 KKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITDI----------------------------------TVLSRL 155 (291)
T ss_dssp TTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCC----------------------------------GGGGGC
T ss_pred CCCCEEECCCCcC-CCC-hhhcCCCCCCEEEccCCcCCcc----------------------------------hhhccC
Confidence 6666666666542 222 2344444444444444433221 234455
Q ss_pred CCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 283 PNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 283 ~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
++|++|++++|.+... +. +..+++|+.|++++|.+. .++.+..+++|+.|++++|+
T Consensus 156 ~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEE
T ss_pred CCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC-CChhhccCCCCCEEECcCCc
Confidence 6666666666666554 22 666677777777776543 34456666777777777665
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=143.70 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=116.8
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
...+++|+.|+++++. +. .++. +..+++|++|++++ |. +..++. +..+++|++|++++|.++.+|
T Consensus 42 ~~~l~~L~~L~l~~~~-----i~-~~~~-~~~l~~L~~L~L~~------n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-----IK-SVQG-IQYLPNVTKLFLNG------NK-LTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHHTCCEEECTTSC-----CC-CCTT-GGGCTTCCEEECCS------SC-CCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hhhcCcccEEEccCCC-----cc-cChh-HhcCCCCCEEEccC------Cc-cCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 3467899999999987 33 3333 78899999999999 77 445555 899999999999999999877
Q ss_pred hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccC
Q 044264 173 ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 173 ~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
. +..+++|++|++++|. +..++ .+..+++|++|++++|.. ..+ ..+..+++|+.|++++|...+..+ +..+++
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred h-hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 5 8999999999999998 66664 588999999999999984 444 567888888888888876654332 666666
Q ss_pred cceeeeccc
Q 044264 253 LIDLLLYFG 261 (439)
Q Consensus 253 L~~L~l~~~ 261 (439)
|+.|++++|
T Consensus 180 L~~L~L~~N 188 (291)
T 1h6t_A 180 LQNLYLSKN 188 (291)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 666666665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=155.43 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=105.9
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
+..+++|+.|++++|.+..+| .+..+++|+.|++++|. +..++. +..+++|+.|++++|.. ..+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCE
Confidence 345566666666666665554 35566666666666665 444444 55666666666666553 3333 4556666666
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|+++.|.... ...+..+++|+.|++++|.... + ..+..+++|+.|+|++|.+... +. +..+++|+.
T Consensus 114 L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~ 179 (605)
T 1m9s_A 114 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQN 179 (605)
T ss_dssp EECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC---------C-GGGGSCTTCSEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred EEecCCCCCC--CccccCCCccCEEECCCCccCC---------c-hhhcccCCCCEEECcCCcCCCc-hh-hccCCCCCE
Confidence 6666555443 2346666677777776663221 1 3466677788888887777764 22 777888888
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|+|++|.+.. ++.+..+++|+.|++++|.
T Consensus 180 L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred EECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 8888876543 4567778888888888776
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=154.94 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=68.4
Q ss_pred cccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
+..+++|+.|+|++|.+..+++ +..+++|+.|++++|. +..+| .+..+++|+.|++++|.. ..+ ..+..+++|+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLES 135 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSCC-CCC-GGGGGCTTCSE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCCC-CCC-ccccCCCccCE
Confidence 4444444444444444444443 4444444444444444 33333 244444444444444442 222 22444444444
Q ss_pred ccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccE
Q 044264 232 VEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 232 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 311 (439)
|+++.|..... ..+..+++|+.|++++|.... ++. +..+++|+.|+|++|.+... ..+..+++|+.
T Consensus 136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~---------~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~ 201 (605)
T 1m9s_A 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD---------IVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV 201 (605)
T ss_dssp EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred EECCCCccCCc--hhhcccCCCCEEECcCCcCCC---------chh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence 44444443322 334455555555555542111 111 44555555555555555542 33555566666
Q ss_pred EeecCCCCC
Q 044264 312 LTLSHCINC 320 (439)
Q Consensus 312 L~l~~~~~~ 320 (439)
|+|++|.+.
T Consensus 202 L~L~~N~l~ 210 (605)
T 1m9s_A 202 LELFSQECL 210 (605)
T ss_dssp EECCSEEEE
T ss_pred EEccCCcCc
Confidence 666655443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=134.73 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=82.9
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
..+++|++|++++|.++.+| .+..+++|++|++++|. ...++ .+..+++|++|++++|......|..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44555666666666555555 45555666666665553 33332 35555555555555554333333444444444444
Q ss_pred cceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeecc-CCccCCchhhcccCccE
Q 044264 233 EKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYR-GNNVHPHWMMSLTDLRI 311 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~l~~~~~~~~~L~~ 311 (439)
+++.|...+. .+..+..+++|++|++++|. .... + .+..+++|+.
T Consensus 118 ~Ls~n~i~~~--------------------------------~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~ 163 (197)
T 4ezg_A 118 DISHSAHDDS--------------------------------ILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKS 163 (197)
T ss_dssp ECCSSBCBGG--------------------------------GHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCE
T ss_pred EecCCccCcH--------------------------------hHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCE
Confidence 4444433322 23444556666666666665 4442 3 5667777777
Q ss_pred EeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 312 LTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 312 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
|++++|.... ++.+..+++|+.|++++|.
T Consensus 164 L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 164 LNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred EECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 7777776543 4456667777777777766
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=134.56 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=107.0
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+..+..+++++ +. +..++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..++. +..++
T Consensus 17 ~l~~l~~l~l~~------~~-i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGK------QS-VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTC------SC-TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhcC------CC-ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 344555666665 44 33444 3566677777777777766666 56666777777777666 555555 66667
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|++|++++|.. ..+|.. . . ++|+.|++++|.... + ..+..++
T Consensus 86 ~L~~L~L~~N~l-~~l~~~-~------------------------~-~~L~~L~L~~N~l~~---------~-~~l~~l~ 128 (263)
T 1xeu_A 86 KLEELSVNRNRL-KNLNGI-P------------------------S-ACLSRLFLDNNELRD---------T-DSLIHLK 128 (263)
T ss_dssp SCCEEECCSSCC-SCCTTC-C------------------------C-SSCCEEECCSSCCSB---------S-GGGTTCT
T ss_pred CCCEEECCCCcc-CCcCcc-c------------------------c-CcccEEEccCCccCC---------C-hhhcCcc
Confidence 777777766653 333221 1 1 455555555553211 1 2356677
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
+|+.|++++|.+... + .+..+++|+.|++++|.+... +.+..+++|+.|++++|.
T Consensus 129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 788888887777764 3 677888889999988877654 667888889999998887
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-15 Score=125.56 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=83.4
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.++....+| .+..+++|+.|++.+|. + ..++ .+..+++|++|++++ |.+....+..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-----~-~~~~-~l~~l~~L~~L~l~~------n~l~~~~~~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-----A-TNYN-PISGLSNLERLRIMG------KDVTSDKIPNL 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-----C-SCCG-GGTTCTTCCEEEEEC------TTCBGGGSCCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-----C-Ccch-hhhcCCCCCEEEeEC------CccCcccChhh
Confidence 345666666666666555 45566666666666664 1 1122 355666666666666 55333345556
Q ss_pred ccccccceeecCCCCCcc-CChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLKIEK-LPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|.. ..++ .+..+++|+.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCE
Confidence 666666666666666553 45556666666666666665444454 356666666666666553 2333 3445555555
Q ss_pred ccceeec
Q 044264 232 VEKFVVG 238 (439)
Q Consensus 232 L~l~~~~ 238 (439)
|++.+|.
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 5554443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=149.81 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=21.5
Q ss_pred cEEEEeeccCCccCCchhhcccCccEEeecCCCCCCc
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEH 322 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 322 (439)
+.|++++|.+..+ |..+..+++|+.|++++|.+...
T Consensus 210 ~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 210 IFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp EEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHH
T ss_pred eEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCc
Confidence 6666666665554 55555566666666666655443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-15 Score=147.87 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=121.9
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL 205 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L 205 (439)
.+|+.|++++ +. +..+|..+ .++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.. +|
T Consensus 59 ~~L~~L~Ls~------n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNR------LN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCS------SC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CCccEEEeCC------CC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 3788888888 66 44466654 367888888888888887 457888888888887 556776 554 88
Q ss_pred ceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCc
Q 044264 206 MYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNL 285 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 285 (439)
++|++++|.. ..+|. .+++|+.|++++|.... ++. .+++|+.|++++|... .++. +. ++|
T Consensus 123 ~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~---------~lp~-l~--~~L 182 (571)
T 3cvr_A 123 KHLDVDNNQL-TMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT---------FLPE-LP--ESL 182 (571)
T ss_dssp CEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS---------CCCC-CC--TTC
T ss_pred CEEECCCCcC-CCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC---------Ccch-hh--CCC
Confidence 8888888874 44665 57788888887776654 333 4567777877777321 1222 33 678
Q ss_pred cEEEEeeccCCccCCchhhcccCc-------cEEeecCCCCCCcCCC-CCCcCCcCeeeeccccCeeEe
Q 044264 286 KHLGIHQYRGNNVHPHWMMSLTDL-------RILTLSHCINCEHLPP-LGKLPSLEQLYFYSMGSVKRV 346 (439)
Q Consensus 286 ~~L~l~~~~~~~~l~~~~~~~~~L-------~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~ 346 (439)
+.|++++|.+..+ |. +.. +| +.|++++|.+.. +|. +..+++|+.|++++|+....+
T Consensus 183 ~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 183 EALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 8888888877765 55 433 56 888888876653 554 666788888888888744433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-15 Score=127.93 Aligned_cols=122 Identities=28% Similarity=0.324 Sum_probs=64.8
Q ss_pred EEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccc
Q 044264 79 SMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158 (439)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 158 (439)
+.........+|..+ .++++.|+++++. +....+..+..+++|++|++++ +.+....+..+..+++|
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGG------NKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCC------CccCccChhhcCCCCCc
Confidence 334444445555443 2456666666665 3344444455666666666666 54222222334556666
Q ss_pred ceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcc
Q 044264 159 RYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~ 214 (439)
++|++++|.++.+|.. +..+++|++|++++|. +..++. .+..+++|++|++++|.
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 6666666666555543 4556666666666665 333333 24555556666555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-16 Score=157.51 Aligned_cols=198 Identities=19% Similarity=0.042 Sum_probs=128.3
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCC-------------cccccchhhhhccccceee-ccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ-------------DLKELPQGFGKLINLMYLL-NRGTESLRY 218 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~-------------~~~~l~~~i~~l~~L~~L~-l~~~~~~~~ 218 (439)
..+++|+.|+|++|.++.+|..++++++|+.|+++++. .....|..++.+++|+.|+ ++.+. ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 45667777777777777777777777777777775543 2334455667777777776 33332 111
Q ss_pred CCc------cccc--CcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEE
Q 044264 219 LPA------GIER--LTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGI 290 (439)
Q Consensus 219 ~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 290 (439)
++. .+.. ...|+.|++++|.... ++. ++.+++|+.|++++|. ...+|..++.+++|+.|++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~---------l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR---------LRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC---------CCCCCGGGGGCTTCCEEEC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc---------ccccchhhhcCCCCCEEEC
Confidence 111 0111 1246777777776654 443 7778888888888773 2344566777888888888
Q ss_pred eeccCCccCCchhhcccCccEEeecCCCCCCcC-CC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCC
Q 044264 291 HQYRGNNVHPHWMMSLTDLRILTLSHCINCEHL-PP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFP 368 (439)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 368 (439)
++|.+..+ | .+..+++|+.|++++|.+.... |. ++.+++|+.|++++|. +..++...... ...+|
T Consensus 494 s~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l----------~~~lp 560 (567)
T 1dce_A 494 SDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERL----------AEMLP 560 (567)
T ss_dssp CSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHH----------HHHCT
T ss_pred CCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHH----------HHHCc
Confidence 88888774 6 7778888888888888776653 43 7788888888888887 44343321110 23478
Q ss_pred Ccceeec
Q 044264 369 KLKTIQF 375 (439)
Q Consensus 369 ~L~~L~l 375 (439)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-15 Score=135.78 Aligned_cols=170 Identities=18% Similarity=0.128 Sum_probs=126.4
Q ss_pred CCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh
Q 044264 95 SVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET 174 (439)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~ 174 (439)
.+..+..+.+.++. +.. ++ .+..+++|++|++++ +. +..++ .+..+++|++|++++|.++.+++
T Consensus 17 ~l~~l~~l~l~~~~-----i~~-~~-~~~~l~~L~~L~l~~------n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-----VTD-LV-SQKELSGVQNFNGDN------SN-IQSLA-GMQFFTNLKELHLSHNQISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSC-----TTS-EE-CHHHHTTCSEEECTT------SC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHHHhcCCC-----ccc-cc-chhhcCcCcEEECcC------CC-cccch-HHhhCCCCCEEECCCCccCCChh-
Confidence 34556677777776 333 33 377899999999999 76 55666 68899999999999999999988
Q ss_pred HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcc
Q 044264 175 LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLI 254 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 254 (439)
+..+++|++|++++|. +..+|.. .. ++|++|++++|.. ..++ .+..+++|+.|++++|...+. ..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCC
T ss_pred hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCC
Confidence 9999999999999998 7777763 33 9999999999974 4443 577888888888887776543 2566777777
Q ss_pred eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 255 DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
.|++++|.... + ..+..+++|+.|++++|....
T Consensus 154 ~L~L~~N~i~~---------~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 154 VLDLHGNEITN---------T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EEECTTSCCCB---------C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEECCCCcCcc---------h-HHhccCCCCCEEeCCCCcccC
Confidence 77777764222 1 445566666666666665544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=122.93 Aligned_cols=162 Identities=19% Similarity=0.259 Sum_probs=133.8
Q ss_pred cCCceeEEEEEcCCCCCcCcc-cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFPIS-FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
...+++.+.+.++....++.. +..+++|++|++.+|. +....+..|..+++|++|++++ |.+....+.
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~ 94 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----LQSLPNGVFNKLTSLTYLNLST------NQLQSLPNG 94 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCS------SCCCCCCTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----cCccChhhcCCCCCcCEEECCC------CcCCccCHh
Confidence 456899999999988877654 6789999999999987 5555666688999999999999 774433344
Q ss_pred ccccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcc
Q 044264 151 NIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
.+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++. .+..+++|++|++++|... +.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCCC
Confidence 578999999999999999988765 7899999999999998 556655 4789999999999998643 45678
Q ss_pred cccccceeeccccccccccccccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
|+.|.++.+...+.++..++.++.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 999999999888888888777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-16 Score=157.87 Aligned_cols=121 Identities=19% Similarity=0.107 Sum_probs=79.4
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
.|+.|++++|. +..+|. ++.+++|+.|++++|... .+|..++.+++|+.|++++|.. ..++ .+..++
T Consensus 442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l---------~~lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL---------ENVD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC---------CCCG-GGTTCS
T ss_pred CceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC---------CCCc-ccCCCC
Confidence 45666666665 334554 666666666666666554 4555666666666666666631 1233 567778
Q ss_pred CccEEEEeeccCCccC-CchhhcccCccEEeecCCCCCCcCCCC----CCcCCcCeeee
Q 044264 284 NLKHLGIHQYRGNNVH-PHWMMSLTDLRILTLSHCINCEHLPPL----GKLPSLEQLYF 337 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l 337 (439)
+|+.|++++|.+.... |..+..+++|+.|++++|.+....+.. ..+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888888888877764 677888889999999988776555433 23678888753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=125.85 Aligned_cols=148 Identities=25% Similarity=0.368 Sum_probs=107.3
Q ss_pred eeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-ccccc
Q 044264 76 VRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEK 154 (439)
Q Consensus 76 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~ 154 (439)
.+.+.........+|..+. ++|+.|++++|. +....+..|..+++|++|++++ |. +..+| ..+..
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~------N~-l~~i~~~~~~~ 86 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-----ITKLEPGVFDSLINLKELYLGS------NQ-LGALPVGVFDS 86 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCS------SC-CCCCCTTTTTT
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-----cCccCHHHhhCccCCcEEECCC------CC-CCCcChhhccc
Confidence 3445566666677776554 788888888887 5666677788888888888888 66 34444 44677
Q ss_pred ccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC-cccccCcccccc
Q 044264 155 LVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRV 232 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 232 (439)
+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.|
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEE
Confidence 88888888888888877654 5778888888888887 667888788888888888888764 3443 346666777777
Q ss_pred cceeecc
Q 044264 233 EKFVVGR 239 (439)
Q Consensus 233 ~l~~~~~ 239 (439)
++.+|..
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 6666544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=125.30 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+...+.....+|..+. +.++.|++.+|. +....+..|..+++|++|++++ |.+....|..+..+++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~------N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSN------NQISELAPDAFQGLRS 81 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCS------SCCCEECTTTTTTCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCC------CcCCCcCHHHhhCCcC
Confidence 34444555566666543 567777777776 4555555677777777777777 6644444666777777
Q ss_pred cceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccccee
Q 044264 158 LRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFV 236 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (439)
|++|+|++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++.+
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 77777777777777654 46677777777777773333345667777777777777764333333455566666666555
Q ss_pred ec
Q 044264 237 VG 238 (439)
Q Consensus 237 ~~ 238 (439)
|.
T Consensus 162 N~ 163 (220)
T 2v9t_B 162 NP 163 (220)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-15 Score=152.44 Aligned_cols=168 Identities=21% Similarity=0.151 Sum_probs=103.0
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
...++++.+........+..+.....|+.+.+.......+. ....+..+..++.|+.|+|++ +. +..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~------n~-l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR-MVMPKDSKYDDQLWHALDLSN------LQ-IFNISANI 243 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTT------SC-CSCCCGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc-eecChhhhccCCCCcEEECCC------CC-CCCCChhh
Confidence 35577788877777666655544455555444332210011 124567788899999999998 77 55788778
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRV 232 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (439)
..+++|++|+|++|.++.+|..++++++|++|+|++|. +..+|..++.|++|++|++++|. +..+|..++.+++|+.|
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEE
Confidence 89999999999999999999999999999999999998 66889999999999999999987 46888889999999999
Q ss_pred cceeeccccccccccccc
Q 044264 233 EKFVVGRGVARSSELENK 250 (439)
Q Consensus 233 ~l~~~~~~~~~~~~l~~l 250 (439)
++++|...+..+..+..+
T Consensus 322 ~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp ECTTSCCCSHHHHHHHHH
T ss_pred eCCCCccCCCChHHHhhc
Confidence 999988877666555443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=121.28 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhh-HhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLP-QLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
.+.+.+.....+|..+. +.++.|++++|. +....+ ..|..+++|++|++++ |.+....+..+..++
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSN------NKITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCS------SCCCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCC------CcCCEECHHHhCCCC
Confidence 44455555555555442 344566666665 333322 3355666666666666 553322333556666
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccce
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKF 235 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (439)
+|++|++++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|......|..+..+++|+.|++.
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 66666666666665544 35566666666666665222234455566666666666655433334445555555555554
Q ss_pred eec
Q 044264 236 VVG 238 (439)
Q Consensus 236 ~~~ 238 (439)
+|.
T Consensus 162 ~N~ 164 (220)
T 2v70_A 162 ANP 164 (220)
T ss_dssp SCC
T ss_pred CcC
Confidence 443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=123.39 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=24.7
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
+|++|++++|.+..+ |..+..+++|+.|++++|.+....+. +..+++|+.|++++|+
T Consensus 113 ~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 333333333333332 44444445555555555444322222 4444555555555544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-14 Score=132.25 Aligned_cols=172 Identities=17% Similarity=0.134 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhh-cCCceeEEeCCccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFD-ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
+.+.+.+.....+|..+. +.++.|++++|. +....+..+. .+++|+.|++++ |.+....+..+..+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-----l~~l~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSH------NHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-----CCEECTTSSSSCCTTCCEEECCS------SCCCEECTTTTTTC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-----CCccChhhhhhcccccCEEECCC------CcCCccChhhccCC
Confidence 355666666777777654 468889999987 5555566666 889999999998 77444444568889
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCccc----ccCcccc
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGI----ERLTSLR 230 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~ 230 (439)
++|++|+|++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|.. ..+|..+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCC
Confidence 999999999999887765 578889999999999884333466788899999999998874 5566543 5688899
Q ss_pred cccceeeccccccccccccccC--cceeeecccC
Q 044264 231 RVEKFVVGRGVARSSELENKKN--LIDLLLYFGH 262 (439)
Q Consensus 231 ~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 262 (439)
.|++++|.........+..++. |+.|++.+|.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 9998888777655566777776 4778888774
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=120.28 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=82.8
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchh-hhhcc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQG-FGKLI 203 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~ 203 (439)
+.|+.|++++ +.+....+..+..+++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|.. +..++
T Consensus 32 ~~l~~L~l~~------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQ------NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCS------SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCCCEEECCC------CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCC
Confidence 5677777777 663333334566777777777777777655 5567777777777777776 5555543 46677
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
+|++|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 7777777777654444555666677777777666655544444555555555555555
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=120.02 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=90.9
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCccCCh-hHhh
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCE 177 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~ 177 (439)
+.++++++. + ..+|..+ .+.++.|++++ +.+....+ ..+..+++|++|++++|.++.+++ .+..
T Consensus 14 ~~l~~s~n~-----l-~~iP~~~--~~~~~~L~L~~------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQK-----L-NKIPEHI--PQYTAELRLNN------NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79 (220)
T ss_dssp TEEECCSSC-----C-SSCCSCC--CTTCSEEECCS------SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEeEeCCCC-----c-ccCccCC--CCCCCEEEcCC------CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence 466666665 2 2234322 23466777777 65332222 336677777777777777776654 5777
Q ss_pred ccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCccee
Q 044264 178 LYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDL 256 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 256 (439)
+++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|+.|++.+|......+..+..+++|+.|
T Consensus 80 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 7777777777777 44443 346777777777777776544445566667777777776666655555555566666666
Q ss_pred eeccc
Q 044264 257 LLYFG 261 (439)
Q Consensus 257 ~l~~~ 261 (439)
++++|
T Consensus 159 ~L~~N 163 (220)
T 2v70_A 159 NLLAN 163 (220)
T ss_dssp ECCSC
T ss_pred EecCc
Confidence 66555
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=132.96 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=71.9
Q ss_pred eEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc-cccccceeecCCCCCccCCh-hHhh
Q 044264 100 RSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE-KLVHLRYLNLSRLKIEKLPE-TLCE 177 (439)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp~-~i~~ 177 (439)
+.+++.++. ...+|..+ .+.++.|++++ |.+....+..+. .+++|++|+|++|.++.+++ .+.+
T Consensus 21 ~~l~c~~~~------l~~iP~~~--~~~l~~L~Ls~------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQ------LPNVPQSL--PSYTALLDLSH------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSC------CSSCCSSC--CTTCSEEECCS------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCC------cCccCccC--CCCCCEEECCC------CCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 456666654 22333322 23466677776 553332333344 66677777777777666653 4666
Q ss_pred ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeeccc
Q 044264 178 LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRG 240 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (439)
+++|++|++++|. +..++. .+..+++|++|++++|......|..+..+++|+.|++++|...
T Consensus 87 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 87 VPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 6777777777766 444433 4566667777777666644333455566666666666655544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=114.60 Aligned_cols=110 Identities=26% Similarity=0.253 Sum_probs=49.1
Q ss_pred hhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCcc-CChhHhhccCCcEeecCCCCcccccc
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPETLCELYNLQLLNVESCQDLKELP 196 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~l~ 196 (439)
+|..+..+++|++|++++ |. +..+ ..+..+++|++|++++|.++. +|..+.++++|++|++++|. +..+|
T Consensus 41 i~~~~~~l~~L~~L~l~~------n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 111 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLIN------VG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDIS 111 (168)
T ss_dssp CSSCCGGGGGCCEEEEES------SC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSG
T ss_pred HHHHHHhCCCCCEEeCcC------CC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcch
Confidence 333344445555555544 33 2222 334445555555555555443 44444445555555555554 33333
Q ss_pred --hhhhhccccceeeccCccccccCCc----ccccCcccccccceee
Q 044264 197 --QGFGKLINLMYLLNRGTESLRYLPA----GIERLTSLRRVEKFVV 237 (439)
Q Consensus 197 --~~i~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~ 237 (439)
..+..+++|++|++++|.. ...|. .+..+++|+.|++..|
T Consensus 112 ~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp GGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence 3444455555555554442 22222 3444444444444443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=112.87 Aligned_cols=123 Identities=27% Similarity=0.284 Sum_probs=61.2
Q ss_pred CCeeEEEecCCCCChhhHh-hhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCcc-CChh
Q 044264 97 KRLRSLLIDDNGDDEFWLT-EVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEK-LPET 174 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~ 174 (439)
++++.|++++|. +. +.+|..+..+++|++|++++ |. +..+ ..+..+++|++|++++|.++. +|..
T Consensus 17 ~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~------n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTIN------VG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTT------SC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred ccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcC------CC-CCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 445555555554 22 23444445555555555555 43 2222 345555555555555555554 4444
Q ss_pred HhhccCCcEeecCCCCcccccc--hhhhhccccceeeccCccccccCCc----ccccCcccccccc
Q 044264 175 LCELYNLQLLNVESCQDLKELP--QGFGKLINLMYLLNRGTESLRYLPA----GIERLTSLRRVEK 234 (439)
Q Consensus 175 i~~l~~L~~L~l~~~~~~~~l~--~~i~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l 234 (439)
++.+++|++|++++|. +..+| ..++.+++|++|++++|.. ...|. .+..+++|+.|++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 5555555555555555 33332 4455555555555555543 22222 3444555555543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=113.64 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=96.3
Q ss_pred hcCCceeEEeCCccccccccccc-cccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 123 DELTCLRALDFAMFQMWSWNGFI-KEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 123 ~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
...++|+.|++++ +.+. ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..
T Consensus 21 ~~~~~L~~L~l~~------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 21 RTPAAVRELVLDN------CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp SCTTSCSEEECCS------CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CCcccCCEEECCC------CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3458899999999 7633 37788788999999999999998887 67888999999999999844447877788
Q ss_pred ccccceeeccCccccccCC--cccccCcccccccceeeccccccc---cccccccCcceeeeccc
Q 044264 202 LINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVARS---SELENKKNLIDLLLYFG 261 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 261 (439)
+++|++|++++|.. ..+| ..+..+++|+.|++++|......+ ..+..+++|+.|++..+
T Consensus 94 l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999874 4444 456677777777777665543322 24445555555555444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=112.31 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=103.8
Q ss_pred cCCceeEEeCCccccccccccc-cccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFI-KEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKL 202 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l 202 (439)
..++|+.|++++ +.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+..+
T Consensus 15 ~~~~l~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDN------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTT------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccC------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 457899999999 7744 37888889999999999999999888 678899999999999999444488888889
Q ss_pred cccceeeccCccccccCC--cccccCcccccccceeeccccccc---cccccccCcceeeec
Q 044264 203 INLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVARS---SELENKKNLIDLLLY 259 (439)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 259 (439)
++|++|++++|.. ..+| ..+..+++|++|++++|...+..+ ..+..+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999985 4433 678888899999888887665443 457777888877764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-13 Score=111.91 Aligned_cols=130 Identities=23% Similarity=0.247 Sum_probs=88.6
Q ss_pred cCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCC
Q 044264 93 FCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLP 172 (439)
Q Consensus 93 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp 172 (439)
+..+++|+.|++.+|. +. .++......++|++|++++ |. +..+ ..+..+++|++|++++|.++.+|
T Consensus 15 ~~~~~~L~~L~l~~n~-----l~-~i~~~~~~~~~L~~L~Ls~------N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-----IP-VIENLGATLDQFDAIDFSD------NE-IRKL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSC-----CC-SCCCGGGGTTCCSEEECCS------SC-CCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred cCCcCCceEEEeeCCC-----Cc-hhHHhhhcCCCCCEEECCC------CC-CCcc-cccccCCCCCEEECCCCcccccC
Confidence 4466778888888876 23 2344333344788888887 65 3334 45777888888888888888777
Q ss_pred hhH-hhccCCcEeecCCCCcccccch--hhhhccccceeeccCccccccCCcc----cccCcccccccceeec
Q 044264 173 ETL-CELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTESLRYLPAG----IERLTSLRRVEKFVVG 238 (439)
Q Consensus 173 ~~i-~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~ 238 (439)
+.+ +.+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. +..+++|+.|++..+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 544 778888888888887 566665 677788888888888774 345543 5666666666665554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-12 Score=118.64 Aligned_cols=284 Identities=12% Similarity=0.086 Sum_probs=168.4
Q ss_pred CCCeeEEEecCCCCChhhHhhhhhHhhhc-CCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh-
Q 044264 96 VKRLRSLLIDDNGDDEFWLTEVLPQLFDE-LTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE- 173 (439)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~- 173 (439)
+.+++.|.+.++- .......+.. +++|+.|+|++ +.+ ......-+.++.++.+.+..+ .+|+
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~l~~~l~~L~~LdLs~------n~i-~~~~~~~~~~~~~~~~~~~~~---~I~~~ 87 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRHLRDEFPSLKVLDISN------AEI-KMYSGKAGTYPNGKFYIYMAN---FVPAY 87 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHHHHHSCTTCCEEEEEE------EEE-CCEEESSSSSGGGCCEEECTT---EECTT
T ss_pred hCceeEEEEeccc------cHHHHHHHHHhhccCeEEecCc------cee-EEecCcccccccccccccccc---ccCHH
Confidence 5678888888753 2111222344 78899999998 552 211111112222344444443 3332
Q ss_pred hHhh--------ccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCCcccccCcccccccceeec----cc
Q 044264 174 TLCE--------LYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG----RG 240 (439)
Q Consensus 174 ~i~~--------l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~ 240 (439)
.+.+ +++|+.|++.+ . +..++. .+..|++|+.+.+..+....-.+..+..+.++..+...... ..
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc
Confidence 3455 78888888887 4 555544 57788888888888776433333456666666655543311 11
Q ss_pred cccccccccccCcc-eeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhh-cccCccEEeecCCC
Q 044264 241 VARSSELENKKNLI-DLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMM-SLTDLRILTLSHCI 318 (439)
Q Consensus 241 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~L~~L~l~~~~ 318 (439)
......+..+..|+ .+.+..... ....+...-....+++.+.+.+.-.... ...+. .+++|+.+++++|.
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~~~-------l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAMGK-------LEDEIMKAGLQPRDINFLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTTCC-------HHHHHHHTTCCGGGCSEEEEEECCCHHH-HHHHHHHCTTCCEEECTTBC
T ss_pred cccccccccccccceeEEecCCCc-------HHHHHhhcccCccccceEEEeeeecHHH-HHHHHHhcCCCeEEECCCCC
Confidence 11223355566666 344433210 1123333334566778888876543322 12222 48899999999876
Q ss_pred CCCcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcc-eeeccCCCCccccccCCCcccccCc
Q 044264 319 NCEHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLK-TIQFWDMYVLKEWDYGDTIKGEIMP 396 (439)
Q Consensus 319 ~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~p 396 (439)
.....+. +.+|++|+.|.+.++ ++.++... +.++++|+ .+.+.+ .++.+..... ..++
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a-------------F~~~~~L~~~l~l~~--~l~~I~~~aF---~~c~ 297 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV-------------FSNCGRLAGTLELPA--SVTAIEFGAF---MGCD 297 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTT-------------TTTCTTCCEEEEECT--TCCEECTTTT---TTCT
T ss_pred cceecHhhhhCCCCCCEEECCcc--cceehHHH-------------hhCChhccEEEEEcc--cceEEchhhh---hCCc
Confidence 5433333 888999999999886 66666532 66788898 999976 5666543322 4578
Q ss_pred ccceeeecccccccCCCC-CCCCCCCccEEE
Q 044264 397 RLSSLCIARCPTLRALPD-HLLQTTTLQKLE 426 (439)
Q Consensus 397 ~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~ 426 (439)
+|++|++.++ .++.|+. .+.++++|+.|.
T Consensus 298 ~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 8999998776 6777765 566788888875
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-14 Score=142.39 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=114.2
Q ss_pred CCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCC
Q 044264 87 APFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRL 166 (439)
Q Consensus 87 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 166 (439)
...+..+..++.|+.|++++|. +. .+|..+..+++|++|+|++ |. +..+|..+..+++|++|+|++|
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~-----l~-~l~~~~~~l~~L~~L~Ls~------N~-l~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQ-----IF-NISANIFKYDFLTRLYLNG------NS-LTELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --------CCCCCCEEECTTSC-----CS-CCCGGGGGCCSCSCCBCTT------SC-CSCCCGGGGGGTTCCEEECTTS
T ss_pred ecChhhhccCCCCcEEECCCCC-----CC-CCChhhcCCCCCCEEEeeC------Cc-CcccChhhhCCCCCCEEeCcCC
Confidence 3346678889999999999997 33 5666677999999999999 77 5588999999999999999999
Q ss_pred CCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcc-cccccceeecccccccc
Q 044264 167 KIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTS-LRRVEKFVVGRGVARSS 245 (439)
Q Consensus 167 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~ 245 (439)
.++.+|..++++++|++|+|++|. +..+|..++.|++|++|++++|......|..+..+.. +..+++.+|......+.
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999999999999999998 7799999999999999999999976666665544322 22356666666555444
Q ss_pred ccccccCcceeeeccc
Q 044264 246 ELENKKNLIDLLLYFG 261 (439)
Q Consensus 246 ~l~~l~~L~~L~l~~~ 261 (439)
.|+.|+++.+
T Consensus 360 ------~l~~l~l~~n 369 (727)
T 4b8c_D 360 ------ERRFIEINTD 369 (727)
T ss_dssp ------C---------
T ss_pred ------ccceeEeecc
Confidence 3445555444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=109.20 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=70.5
Q ss_pred eEEeCCccccccccccccccccccccccccceeecCCCCCccCChh--HhhccCCcEeecCCCCcccccchhhhhccccc
Q 044264 129 RALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET--LCELYNLQLLNVESCQDLKELPQGFGKLINLM 206 (439)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~ 206 (439)
+++++++ +. +..+|..+.. +|++|++++|.++.++.. ++.+++|++|++++|......|..+..+++|+
T Consensus 11 ~~l~~s~------~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTG------RG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTT------SC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCC------CC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 4556655 44 4455544332 566666666666665542 56666666666666663333355566666666
Q ss_pred eeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 207 YLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
+|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6666666643333344555666666666666555544555555555555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=109.71 Aligned_cols=129 Identities=17% Similarity=0.108 Sum_probs=103.0
Q ss_pred hhcCCceeEEeCCcccccccccccccccccccccc-ccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-h
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV-HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-F 199 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i 199 (439)
+..+.+|+.|++++ +. +..++. +..+. +|++|++++|.++.+ ..++.+++|++|++++|. +..+|.. +
T Consensus 15 ~~~~~~L~~L~l~~------n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRG------YK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTT------SC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHH
T ss_pred cCCcCCceEEEeeC------CC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchh
Confidence 56788999999999 76 445654 45444 999999999999887 578899999999999998 6677754 4
Q ss_pred hhccccceeeccCccccccCCc--ccccCcccccccceeecccccccc----ccccccCcceeeecccC
Q 044264 200 GKLINLMYLLNRGTESLRYLPA--GIERLTSLRRVEKFVVGRGVARSS----ELENKKNLIDLLLYFGH 262 (439)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 262 (439)
..+++|++|++++|.. ..+|. .+..+++|+.|++.+|.... .+. .+..+++|+.|+++.+.
T Consensus 85 ~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 8999999999999984 66665 67888999999998887653 333 37788888888887773
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-12 Score=106.65 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=71.3
Q ss_pred eEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccc-hhhhhccccce
Q 044264 129 RALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMY 207 (439)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~ 207 (439)
+++++++ +. +..+|..+ .++|++|++++|.++.+|..+..+++|++|++++|. +..++ ..+..+++|++
T Consensus 13 ~~l~~~~------~~-l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSN------KG-LKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTT------SC-CSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CEEEcCC------CC-CCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCE
Confidence 3455555 44 44555433 246666777766666666666666677777776666 43433 34666666666
Q ss_pred eeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 208 LLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
|++++|......|..+..+++|+.|++.+|......+..+..+++|+.|++++|
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 666666643333344566666666666666554433334555555555555554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-14 Score=119.67 Aligned_cols=136 Identities=23% Similarity=0.188 Sum_probs=71.0
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGK 201 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~ 201 (439)
+.....++.++++.+...+....+..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhc
Confidence 444555555555552111000012222335666666777777666666666 66666667777766665 5566666666
Q ss_pred ccccceeeccCccccccCCcccccCcccccccceeeccccccc-cccccccCcceeeeccc
Q 044264 202 LINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARS-SELENKKNLIDLLLYFG 261 (439)
Q Consensus 202 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 261 (439)
+++|++|++++|.. ..+| .+..+++|+.|++.+|....... ..+..+++|+.|++++|
T Consensus 92 ~~~L~~L~L~~N~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 ADTLEELWISYNQI-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHCSEEEEEEEEC-CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCEEECcCCcC-CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 66666666666653 3333 34555555555555554432111 23444444444444444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=107.97 Aligned_cols=127 Identities=23% Similarity=0.225 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhH-hhhcCCceeEEeCCccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQ-LFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKL 155 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 155 (439)
+.+.+.+.....+|..+.. +++.|++.+|. +....+. .+..+++|++|++++ |.+....|..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-----i~~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKR------NQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCS------SCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-----CCccCCccccccCCCCCEEECCC------CCCCCcCHhHcCCc
Confidence 4555666666677765543 77778887776 3433332 367777788888877 66444456667777
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcccc
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~ 216 (439)
++|++|++++|.++.++. .+..+++|++|++++|......|..+..+++|++|++++|+..
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 778888888877776654 3677777777777777744444666777777777777777653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-14 Score=122.09 Aligned_cols=145 Identities=19% Similarity=0.163 Sum_probs=107.6
Q ss_pred CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhh
Q 044264 98 RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCE 177 (439)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~ 177 (439)
.++...+.+... ....+|..+..+++|++|++++ |. +..+| .+..+++|++|++++|.++.+|..+..
T Consensus 24 ~l~~~~l~~~~~----~l~~l~~~~~~l~~L~~L~ls~------n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 24 EAEKVELHGMIP----PIEKMDATLSTLKACKHLALST------NN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp TCSEEECCBCCT----TCCCCHHHHHHTTTCSEEECSE------EE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred chheeEeccccC----cHhhhhHHHhcCCCCCEEECCC------CC-Ccccc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 455555555421 1233455788899999999998 66 44566 788899999999999998889988888
Q ss_pred ccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCC--cccccCcccccccceeecccccccc----------
Q 044264 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVARSS---------- 245 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~---------- 245 (439)
+++|++|++++|. +..+| .+..+++|++|++++|.. ..++ ..+..+++|+.|++.+|......+.
T Consensus 92 ~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 8999999999987 66676 588899999999998874 4333 3578889999999988876544332
Q ss_pred ccccccCcceee
Q 044264 246 ELENKKNLIDLL 257 (439)
Q Consensus 246 ~l~~l~~L~~L~ 257 (439)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 256666777665
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=102.71 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=86.0
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+.+.+.....+|..+. ++++.|++.+|. + ..+|..|..+++|+.|++++ |.+....+..+..+++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-----i-~~ip~~~~~l~~L~~L~Ls~------N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-----F-TLVPKELSNYKHLTLIDLSN------NRISTLSNQSFSNMTQ 79 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-----C-CSCCGGGGGCTTCCEEECCS------SCCCCCCTTTTTTCTT
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc-----C-chhHHHhhcccCCCEEECCC------CcCCEeCHhHccCCCC
Confidence 44555556666776543 578888888876 2 24556677888888888887 6644444456777888
Q ss_pred cceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccc
Q 044264 158 LRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTES 215 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~ 215 (439)
|++|+|++|.++.+++ .+..+++|++|++++|. +..+|. .+..+++|+.|++++|+.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888888777764 57778888888888877 555554 467777888888877764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=100.67 Aligned_cols=126 Identities=24% Similarity=0.294 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+.+.+.......+|..+. ++++.|++++|. +....+..+..+++|++|++++ +.+....+..+..++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSQ------NQIQSLPDGVFDKLT 76 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCT
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCc-----ccEeCHHHhcCcccccEEECCC------CcceEeChhHccCCC
Confidence 445556666666665443 678888888876 4555555567788888888887 663333334467788
Q ss_pred ccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchh-hhhccccceeeccCcccc
Q 044264 157 HLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQG-FGKLINLMYLLNRGTESL 216 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~~L~~L~l~~~~~~ 216 (439)
+|++|++++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|+..
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 888888888888777654 5778888888888887 5566554 467888888888887653
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-10 Score=106.05 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=55.2
Q ss_pred HhCCCCCCccEEEEeeccCC-----ccCCchhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCc
Q 044264 277 EALQPPPNLKHLGIHQYRGN-----NVHPHWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDE 349 (439)
Q Consensus 277 ~~l~~~~~L~~L~l~~~~~~-----~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~ 349 (439)
..+..+++|+.+.+.++... .+.+..+..|++|+.+++..+ ...++ .+.+|++|+.+.+..+ ++.++..
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~ 340 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFS 340 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHH
Confidence 34555666666666655443 222445556777777777642 23333 2666677777777443 4444432
Q ss_pred cccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccC-cccceeeecc
Q 044264 350 FLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIM-PRLSSLCIAR 405 (439)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~i~~ 405 (439)
.+..+ +|+.+++.+. .+..+..... ..+ ..+..|.+-.
T Consensus 341 -------------aF~~~-~L~~l~l~~n-~~~~l~~~~F---~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 341 -------------AFNNT-GIKEVKVEGT-TPPQVFEKVW---YGFPDDITVIRVPA 379 (401)
T ss_dssp -------------SSSSS-CCCEEEECCS-SCCBCCCSSC---CCSCTTCCEEEECG
T ss_pred -------------hCCCC-CCCEEEEcCC-CCcccccccc---cCCCCCccEEEeCH
Confidence 14455 6777777654 2333332221 122 3556666654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=108.24 Aligned_cols=282 Identities=11% Similarity=0.037 Sum_probs=164.4
Q ss_pred CceeEEEEEcCCCCCcCcccCC-CCCeeEEEecCCCCChhhHh--hhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCS-VKRLRSLLIDDNGDDEFWLT--EVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
.+++++.+.+.-...-...+.. +++|+.|++++|. +. ...+ ..++.++.+.+.. +. + -+.
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~-----i~~~~~~~---~~~~~~~~~~~~~------~~-I--~~~ 87 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAE-----IKMYSGKA---GTYPNGKFYIYMA------NF-V--PAY 87 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEE-----ECCEEESS---SSSGGGCCEEECT------TE-E--CTT
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcce-----eEEecCcc---ccccccccccccc------cc-c--CHH
Confidence 4567777765322100111222 7889999999986 22 1111 1223334444443 22 1 113
Q ss_pred cccc--------ccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc---ccc
Q 044264 151 NIEK--------LVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES---LRY 218 (439)
Q Consensus 151 ~~~~--------l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~---~~~ 218 (439)
.|.. +++|+.|.+.. .++.+++ ++..|++|+.|++.++....--+..+..+.++..+....... ...
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 3445 99999999998 8888875 588899999999998873333344677777777776654221 011
Q ss_pred C-CcccccCcccc-cccceeecccc-ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccC
Q 044264 219 L-PAGIERLTSLR-RVEKFVVGRGV-ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRG 295 (439)
Q Consensus 219 ~-~~~~~~l~~L~-~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 295 (439)
+ ...+..+.+|+ .+.+....... .....-....+++.+.+.+.. ...........+++|+.+++.++..
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--------~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--------DNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--------CHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee--------cHHHHHHHHHhcCCCeEEECCCCCc
Confidence 1 12244455554 22221111000 000111134566677766552 1122222223478999999999888
Q ss_pred CccCCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcC-eeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcce
Q 044264 296 NNVHPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLE-QLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKT 372 (439)
Q Consensus 296 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 372 (439)
..+.+..+..|++|+.+++.++ ...++. +.+|++|+ .+.+.+ .++.++.. .+.++++|+.
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-------------aF~~c~~L~~ 301 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-------------AFMGCDNLRY 301 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-------------TTTTCTTEEE
T ss_pred ceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-------------hhhCCccCCE
Confidence 8774566889999999999987 444543 88999999 999987 46666643 2677899999
Q ss_pred eeccCCCCccccccCCCcccccCcccceee
Q 044264 373 IQFWDMYVLKEWDYGDTIKGEIMPRLSSLC 402 (439)
Q Consensus 373 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~ 402 (439)
+++.+. .++.+..... ..+++|+.+.
T Consensus 302 l~l~~n-~i~~I~~~aF---~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGD-KITTLGDELF---GNGVPSKLIY 327 (329)
T ss_dssp EEECSS-CCCEECTTTT---CTTCCCCEEE
T ss_pred EEeCCC-ccCccchhhh---cCCcchhhhc
Confidence 998653 4555543221 3456666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=96.71 Aligned_cols=62 Identities=32% Similarity=0.473 Sum_probs=28.7
Q ss_pred cccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcc
Q 044264 152 IEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~ 214 (439)
+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc
Confidence 34455555555555554444432 3445555555555544 333332 23444455555554444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-09 Score=98.34 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=133.3
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCCcccccCcccccccc
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEK 234 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 234 (439)
+|+.+.+..+ ++.++. ++.+ .+|+.+.+.. . +..++ ..+..|.+|+.+++..+. +..++...-.+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 4555554433 333332 2333 2455555543 1 23322 245555555555555443 2333332222455555554
Q ss_pred eeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEee
Q 044264 235 FVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTL 314 (439)
Q Consensus 235 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 314 (439)
.. .........+..|++|+.+.+..+-... -..++.. .+|+.+.+.. ....+....+..|++|+.+++
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I---------~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPENVSTI---------GQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCTTCCEE---------CTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEE
T ss_pred CC-chheehhhHhhCCCCCCEEecCCCccCc---------ccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEe
Confidence 32 1222333456666666666665431000 0123333 5899999943 344443567889999999999
Q ss_pred cCCCCC----CcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCC
Q 044264 315 SHCINC----EHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGD 388 (439)
Q Consensus 315 ~~~~~~----~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 388 (439)
.++... ..++ .+.+|++|+.+.+..+ ++.++... +.++++|+.+.|.+ +++.+....
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~a-------------F~~c~~L~~l~lp~--~l~~I~~~a 341 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGL-------------LGGNRKVTQLTIPA--NVTQINFSA 341 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTT-------------TTTCCSCCEEEECT--TCCEECTTS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhh-------------hcCCCCccEEEECc--cccEEcHHh
Confidence 887553 1233 3889999999999843 66666532 66789999999965 355554332
Q ss_pred CcccccCcccceeeecccccccCCCC-CCCCCC-CccEEEEcCC
Q 044264 389 TIKGEIMPRLSSLCIARCPTLRALPD-HLLQTT-TLQKLEIWGC 430 (439)
Q Consensus 389 ~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~-~L~~L~i~~c 430 (439)
. ..+ +|+++.+.++ .+..++. .+.+++ +++.|.+-..
T Consensus 342 F---~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 342 F---NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp S---SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred C---CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 2 345 8999999998 4555543 345564 7888888643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-10 Score=93.42 Aligned_cols=82 Identities=26% Similarity=0.349 Sum_probs=39.0
Q ss_pred CceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccchh-hhhcc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQG-FGKLI 203 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~-i~~l~ 203 (439)
++|++|++++ |.+....|..+..+++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|.. +..++
T Consensus 33 ~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNN------NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCS------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeCC------CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcccc
Confidence 4455555554 442222234444555555555555555554443 2445555555555554 3344332 44555
Q ss_pred ccceeeccCcc
Q 044264 204 NLMYLLNRGTE 214 (439)
Q Consensus 204 ~L~~L~l~~~~ 214 (439)
+|++|++++|+
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 55555555554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.3e-10 Score=91.89 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc-ccccc
Q 044264 77 RHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK-NIEKL 155 (439)
Q Consensus 77 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~l 155 (439)
+.+.+.+.....+|..+. ++|+.|++++|. +.+..|..|..+++|++|+|++ |. +..+|. .+..+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~------N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-----ITKLEPGVFDHLVNLQQLYFNS------NK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCS------SC-CCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-----ccccCHHHhcCCcCCCEEECCC------CC-CCccChhHhCCc
Confidence 345555566666666553 667777777766 4555566667777777777777 55 333443 34667
Q ss_pred cccceeecCCCCCccCChh-HhhccCCcEeecCCCC
Q 044264 156 VHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQ 190 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 190 (439)
++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 7777777777777766654 6667777777777776
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.98 E-value=9.7e-10 Score=91.17 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=30.0
Q ss_pred ccccccccccceeecCCCCCccCChh-HhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcc
Q 044264 149 PKNIEKLVHLRYLNLSRLKIEKLPET-LCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 149 ~~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~ 214 (439)
|..+..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|+
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 33344444555555555554444432 2444555555555444 333333 24445555555555444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=89.57 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=70.0
Q ss_pred eeEEeCCccccccccccccccccccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccch-hhhhcccc
Q 044264 128 LRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQ-GFGKLINL 205 (439)
Q Consensus 128 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L 205 (439)
.+.+++++ +. +..+|..+ .++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|. .+..+++|
T Consensus 11 ~~~l~~s~------n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSG------KS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTT------SC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCEEEeCC------CC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCC
Confidence 45677777 66 55566554 36788888888888777 4557788888888888887 556555 35778888
Q ss_pred ceeeccCccccccCC-cccccCcccccccceeecc
Q 044264 206 MYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGR 239 (439)
Q Consensus 206 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 239 (439)
++|++++|.. ..+| ..+..+++|+.|++.+|..
T Consensus 81 ~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 81 TQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCCCC
Confidence 8888888774 3444 3466677777777766654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=95.93 Aligned_cols=284 Identities=14% Similarity=0.116 Sum_probs=148.5
Q ss_pred cccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-ccccccccccceeecCCC---
Q 044264 91 ISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLVHLRYLNLSRL--- 166 (439)
Q Consensus 91 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~--- 166 (439)
.+|.+|.+|+.+.+..+ +...-...|.+|.+|+.+++.. + +..+ ...+..+..|+.+.+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~------~--l~~I~~~aF~~c~~L~~i~~p~~l~~ 130 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPD------S--VKMIGRCTFSGCYALKSILLPLMLKS 130 (394)
T ss_dssp TTTTTCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCT------T--CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred HHhhCCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCC------C--ceEccchhhcccccchhhcccCceee
Confidence 35667777777777643 2444445577777777777754 2 2222 223445555555444321
Q ss_pred ---------C---------CccC-ChhHhhccCCcEeecCCCCcccccc-hhhhhccccceeeccCccccccCC-ccccc
Q 044264 167 ---------K---------IEKL-PETLCELYNLQLLNVESCQDLKELP-QGFGKLINLMYLLNRGTESLRYLP-AGIER 225 (439)
Q Consensus 167 ---------~---------~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~-~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~ 225 (439)
. +..+ ...+.++.+|+.+.+.++. ..++ ..+..+.+|+.+.+..+ ...++ ..+..
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~ 206 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE 206 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred ecceeeecccccccccCccccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchhhcc
Confidence 1 1111 2356778899999987653 3333 35778889999888654 22222 34667
Q ss_pred CcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhc
Q 044264 226 LTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMS 305 (439)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~ 305 (439)
+..|+.+.+..+.. ..........+|+.+.+...... --...+..+.+|+.+.+..+..... ...+..
T Consensus 207 ~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~~~---------i~~~~f~~~~~l~~~~~~~~~~~i~-~~~F~~ 274 (394)
T 4fs7_A 207 CILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSFTE---------LGKSVFYGCTDLESISIQNNKLRIG-GSLFYN 274 (394)
T ss_dssp CTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTCCE---------ECSSTTTTCSSCCEEEECCTTCEEC-SCTTTT
T ss_pred ccccceeecCCCce--EeehhhcccCCCceEEECCCcee---------cccccccccccceeEEcCCCcceee-cccccc
Confidence 77888776643321 11222334456666666433100 0012345667777777765433221 344556
Q ss_pred ccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCCCccccc
Q 044264 306 LTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWD 385 (439)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (439)
+..++.+......... ..+..+.+|+.+.+..+ ++.++.. .+..+++|+.+.|.+ .++.+.
T Consensus 275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~-------------aF~~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEE-------------AFESCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTT-------------TTTTCTTCCEECCCT--TCCEEC
T ss_pred ccccceeccCceeecc--ccccccccccccccccc--cceechh-------------hhcCCCCCCEEEeCC--cccEEh
Confidence 6666666655432111 12455666666666543 4444332 144556666666643 233332
Q ss_pred cCCCcccccCcccceeeecccccccCCCC-CCCCCCCccEEEEc
Q 044264 386 YGDTIKGEIMPRLSSLCIARCPTLRALPD-HLLQTTTLQKLEIW 428 (439)
Q Consensus 386 ~~~~~~~~~~p~L~~L~i~~c~~l~~l~~-~l~~~~~L~~L~i~ 428 (439)
... -..+.+|+++.+... ++.|.. .+.+|++|+.+++.
T Consensus 336 ~~a---F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 336 KRS---FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTT---TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred HHh---ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 211 123455666665432 444432 34556666666663
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-08 Score=92.72 Aligned_cols=304 Identities=13% Similarity=0.065 Sum_probs=192.2
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccc------cccccc-
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQM------WSWNGF- 144 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~- 144 (439)
..+++.+.+.. ....+ ..+|.+|++|+.+.+..+- .......|..+..|+.+.+...-. +..+..
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l------~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSV------KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTC------CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCc------eEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 35678777753 34445 4468889999999997653 444455688888888776653100 000110
Q ss_pred -------ccc-cccccccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCccccc-chhhhhccccceeeccCcc
Q 044264 145 -------IKE-IPKNIEKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKEL-PQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 145 -------~~~-~~~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~~L~~L~l~~~~ 214 (439)
... -...|..+.+|+.+.+..+. ..++ ..+.++.+|+.+.+..+ +..+ ...+.++..|+.+.+..+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 001 12346778899999987653 4444 46778999999999765 3333 3357788899988876543
Q ss_pred ccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeecc
Q 044264 215 SLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYR 294 (439)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 294 (439)
. .+........+|+.+.+... ........+..+..|+.+.+..+... -....+..+..++.+......
T Consensus 220 ~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~---------i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 220 Y--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR---------IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp C--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE---------ECSCTTTTCTTCCEEEECSSE
T ss_pred e--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce---------eeccccccccccceeccCcee
Confidence 2 22233344567777665422 22233445778889999888765211 112346678888888776544
Q ss_pred CCccCCchhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcce
Q 044264 295 GNNVHPHWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKT 372 (439)
Q Consensus 295 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 372 (439)
.. ...+..+.+|+.+.+..+ ...++ .+.+|.+|+.+.+..+ ++.++.. .+.++.+|+.
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------------aF~~c~~L~~ 347 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKR-------------SFRGCTSLSN 347 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------------TTTTCTTCCE
T ss_pred ec---cccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHH-------------hccCCCCCCE
Confidence 32 345668999999999764 33343 3788999999999643 6666543 2667889999
Q ss_pred eeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEE
Q 044264 373 IQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKL 425 (439)
Q Consensus 373 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L 425 (439)
+.+... ++.+.... -..+++|+++.+... ++.+...+..+++|+.+
T Consensus 348 i~lp~~--l~~I~~~a---F~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 348 INFPLS--LRKIGANA---FQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT--CCEECTTT---BTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred EEECcc--ccEehHHH---hhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 998642 55554322 145688999998753 45554456678887765
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-10 Score=104.44 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=27.6
Q ss_pred ccccceeecCCCCCccCC-----hhH-hhccCCcEeecCCCCccc----ccchhhhhccccceeeccCcc
Q 044264 155 LVHLRYLNLSRLKIEKLP-----ETL-CELYNLQLLNVESCQDLK----ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp-----~~i-~~l~~L~~L~l~~~~~~~----~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+++|++|+|++|.++... ..+ ...++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 445555666655544221 111 123455555555555211 123333445555555555554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-10 Score=103.75 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=87.6
Q ss_pred CCceeEEeCCccccccccccccc----cccccc-cccccceeecCCCCCcc--CChhHhhccCCcEeecCCCCcccccch
Q 044264 125 LTCLRALDFAMFQMWSWNGFIKE----IPKNIE-KLVHLRYLNLSRLKIEK--LPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~-~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
.+.|+.|++++ |.+... +...+. ..++|++|+|++|.++. +......+++|++|++++|.....-..
T Consensus 71 ~~~L~~L~Ls~------n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAG------VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTT------SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecC------CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 35677888887 543221 222222 23578888888887652 222234456777888887763222112
Q ss_pred hhh-----hccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCCh
Q 044264 198 GFG-----KLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKD 272 (439)
Q Consensus 198 ~i~-----~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 272 (439)
.+. ..++|++|++++|....... ..+...+..+++|++|++++|.... ...
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~--------------------~~l~~~L~~~~~L~~L~Ls~N~l~~----~g~ 200 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGV--------------------AVLMEGLAGNTSVTHLSLLHTGLGD----EGL 200 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHH--------------------HHHHHHHHTCSSCCEEECTTSSCHH----HHH
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHH--------------------HHHHHHHhcCCCcCEEeCCCCCCCc----HHH
Confidence 221 24566667666665321100 0122223445556666666553111 012
Q ss_pred HHHHHhCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCC
Q 044264 273 EEVLEALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 273 ~~~~~~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~ 320 (439)
..+...+..+++|++|++++|.+... +...+..+++|+.|++++|.+.
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 23455566666777777777766542 1223345677888888877654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.6e-09 Score=95.94 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=38.3
Q ss_pred cccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCCC
Q 044264 249 NKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCINC 320 (439)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~ 320 (439)
.+++|+.|.+.++.... ...........+++|++|+++.|.+... ++..+..+++|+.|++++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~-----~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN-----VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHH-----HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCch-----HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46677777776653111 0011112223567888888877765541 1333456788888888877544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.61 E-value=6e-08 Score=90.31 Aligned_cols=101 Identities=20% Similarity=0.122 Sum_probs=74.7
Q ss_pred EEEEcC-CCCCcCcccCCCCCeeEEEecC-CCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 79 SMVKLG-KGAPFPISFCSVKRLRSLLIDD-NGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 79 l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
+...+. ....+|. +..+++|+.|++++ |. +....+..|..+++|+.|+|++ |.+....|..|..++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-----l~~~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH-----LQHLELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTP 80 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-----CCEECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-----CCCcChhHhccccCCCEEECCC------CccceeCHHHhcCCc
Confidence 344454 5667787 78888888888885 66 5555666788888888888888 775555556678888
Q ss_pred ccceeecCCCCCccCChhHhhccCCcEeecCCCCc
Q 044264 157 HLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQD 191 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 191 (439)
+|++|+|++|.++.+|..+.....|+.|++.+|..
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence 88888888888888876554444488888888773
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-08 Score=93.31 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCCccEEEEeeccCCccCCchhh---cccCccEEeecCCCCCCc----CC-CCCCcCCcCeeeecccc
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMM---SLTDLRILTLSHCINCEH----LP-PLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~---~~~~L~~L~l~~~~~~~~----~~-~~~~l~~L~~L~l~~~~ 341 (439)
.+++|++|.+.+|.+....+..+. .+++|+.|+|+.|..... ++ .+..+++|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 478899999988776532112222 578899999988765432 22 23567888999888876
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-08 Score=89.63 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=70.1
Q ss_pred EEEecCC-CCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCccCCh-hHhh
Q 044264 101 SLLIDDN-GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCE 177 (439)
Q Consensus 101 ~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~ 177 (439)
.++..++ . ...+|. +..+++|+.|+|+++ |. +..++ ..|..+++|++|+|++|.++.+|+ .+.+
T Consensus 12 ~v~~~~~n~------l~~ip~-l~~~~~L~~L~l~~~-----n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGA------LDSLHH-LPGAENLTELYIENQ-----QH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCC------CTTTTT-SCSCSCCSEEECCSC-----SS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred EEEcCCCCC------CCccCC-CCCCCCeeEEEccCC-----CC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 4466665 4 334666 788888888888730 44 44444 567888888888888888877654 5688
Q ss_pred ccCCcEeecCCCCcccccchhhhhccccceeeccCccc
Q 044264 178 LYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 178 l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~ 215 (439)
+++|++|+|++|. +..+|..+.....|+.|++.+|..
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence 8888888888887 666665443333388888888764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=83.16 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=50.9
Q ss_pred ccCCCC-CeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-ccccccccccceeecCCCCCc
Q 044264 92 SFCSVK-RLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNIEKLVHLRYLNLSRLKIE 169 (439)
Q Consensus 92 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~ 169 (439)
+|.+++ .|+.+.+... +...-...|.+|.+|+.+.+..+.- .. +..+ ...|..+.+|+.+.+..+ ++
T Consensus 58 aF~~~~~~L~sI~iP~s------vt~Ig~~AF~~C~~L~~i~~~~n~p---~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT------VTEIGSNAFYNCTSLKRVTIQDNKP---SC-VKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp TTTTCCSCCCEEEECTT------CCEECTTTTTTCTTCCEEEEGGGCC---CC-CCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred hccCCCCcCEEEEECCC------eeEEhHHHhhCCccCceEeecCCCC---Ce-eeEechhhchhcccceeeccCCc-cc
Confidence 344453 3666666543 2344445566666676666644100 01 2222 233455556665555432 33
Q ss_pred cCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccC
Q 044264 170 KLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 170 ~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~ 212 (439)
.++ ..+..+.+|+.+.+.... ...-...+..+.+|+.+.+..
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred eehhhhhhhhccccccccccee-eeecccceecccccccccccc
Confidence 333 234555666666664322 111122344555555555543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.9e-06 Score=78.75 Aligned_cols=304 Identities=11% Similarity=0.074 Sum_probs=159.9
Q ss_pred ceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccc-cccc
Q 044264 75 NVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEI-PKNI 152 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~ 152 (439)
.++.+.+... ...+ ..+|.+|.+|+.+.+..+.. ..+...-...|..+..|+.+.+.. + +..+ ...+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p--~~l~~Ig~~aF~~c~~L~~i~~~~------~--~~~I~~~aF 133 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKP--SCVKKIGRQAFMFCSELTDIPILD------S--VTEIDSEAF 133 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCC--CCCCEECTTTTTTCTTCCBCGGGT------T--CSEECTTTT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCC--CeeeEechhhchhcccceeeccCC------c--cceehhhhh
Confidence 3666666433 3333 45788899999999876420 112334455688888888887754 2 3333 3456
Q ss_pred ccccccceeecCCCCCccCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccc
Q 044264 153 EKLVHLRYLNLSRLKIEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRR 231 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 231 (439)
..+.+|+.+.+... +..++ ..+..+..|+.+.+..+ +..+....-...+|+.+.+..... ......+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCccc-ccccchhhhccccce
Confidence 78899999998654 44443 45678889999988764 333433222345788877754321 111234555566555
Q ss_pred ccceeecccc-------------ccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCcc
Q 044264 232 VEKFVVGRGV-------------ARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV 298 (439)
Q Consensus 232 L~l~~~~~~~-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 298 (439)
.......... ...........+..+.+...- ...-...+..+.+|+.+.+...... .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v---------~~i~~~aF~~c~~L~~i~lp~~~~~-I 279 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGV---------ARIETHAFDSCAYLASVKMPDSVVS-I 279 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTE---------EEECTTTTTTCSSCCEEECCTTCCE-E
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCcc---------eEcccceeeecccccEEecccccce-e
Confidence 4432211100 000011112223333322110 0001234566777777777543322 1
Q ss_pred CCchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeecc
Q 044264 299 HPHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFW 376 (439)
Q Consensus 299 l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 376 (439)
....+..+++|+.+.+... ...++. +.+|.+|+.+.+..+ ++.++.. .+.++.+|+.+.|.
T Consensus 280 ~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-------------aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDD-------------AFAGCEQLERIAIP 342 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTT-------------TTTTCTTCCEEEEC
T ss_pred cCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHh-------------HhhCCCCCCEEEEC
Confidence 1344567778887777532 233332 677788888877643 4555432 25567778887775
Q ss_pred CCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEc
Q 044264 377 DMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIW 428 (439)
Q Consensus 377 ~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~ 428 (439)
. .++.+.... -..+++|+++.+.+.... + ..+..+.+|+.+.|.
T Consensus 343 ~--sv~~I~~~a---F~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 343 S--SVTKIPESA---FSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp T--TCCBCCGGG---GTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred c--ccCEEhHhH---hhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 3 244443221 134567777777765221 1 134456667766664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-08 Score=82.07 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCCcceeeccCCCCccccccCCCccc-ccCcccceeeecccccccCC-CCCCCCCCCccEEEEcCCcchhh
Q 044264 366 AFPKLKTIQFWDMYVLKEWDYGDTIKG-EIMPRLSSLCIARCPTLRAL-PDHLLQTTTLQKLEIWGCPNLQK 435 (439)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~p~L~~L~i~~c~~l~~l-~~~l~~~~~L~~L~i~~c~~l~~ 435 (439)
.+++|++|++++|..+++......... ...++|++|+|++|+.+++- -..+..+++|+.|+|++|+.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 455555555555555444332211100 01235666666666555431 01233456666666666655543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-08 Score=81.18 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=20.2
Q ss_pred CcceeeccCCCCccccccCCCcccccCcccceeeecccccccC
Q 044264 369 KLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRA 411 (439)
Q Consensus 369 ~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~ 411 (439)
+|++|+|++|+++++-.... ...+|+|++|++++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH---GGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHH---HhcCCCCCEEECCCCCCCCc
Confidence 45555555555554433221 12356666666666655543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-07 Score=77.69 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=45.6
Q ss_pred hhhhhHhhhcCCceeEEeCCcc-ccccccccccccccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCC
Q 044264 115 TEVLPQLFDELTCLRALDFAMF-QMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVES 188 (439)
Q Consensus 115 ~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~ 188 (439)
...+...+...+.|+.|+|++| .+ +... ...+...+...++|++|+|++|.++ .+...+...+.|++|++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i-~~~g-~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNI-PVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTC-CHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCC-CHHH-HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3444455556666666666662 11 0000 1223334445556666666666654 2334444555666666666
Q ss_pred CCcccc----cchhhhhccccceeec
Q 044264 189 CQDLKE----LPQGFGKLINLMYLLN 210 (439)
Q Consensus 189 ~~~~~~----l~~~i~~l~~L~~L~l 210 (439)
|..... +...+...++|++|++
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 652211 2333444455555555
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.4e-05 Score=69.74 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCceeEEEEEcCCCCCc-CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPF-PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
..+++.+.+.. ....+ ..+|.+|.+|+.+.+..+ +...-...|..+ .|+.+.+.. + +..+...
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~------v~~Ig~~aF~~c-~l~~i~~~~------~--l~~I~~~ 108 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST------VTSIGDGAFADT-KLQSYTGME------R--VKKFGDY 108 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT------CCEECTTTTTTC-CCCEEEECT------T--CCEECTT
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc------ceEechhhhcCC-CCceEECCc------e--eeEeccc
Confidence 45677776643 23333 346777888888888654 234444556666 455554432 1 3333333
Q ss_pred cccccccceeecCCC
Q 044264 152 IEKLVHLRYLNLSRL 166 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~ 166 (439)
.....+|+.+.+..+
T Consensus 109 aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 109 VFQGTDLDDFEFPGA 123 (379)
T ss_dssp TTTTCCCSEEECCTT
T ss_pred eeccCCcccccCCCc
Confidence 222336777776543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-06 Score=69.20 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=83.8
Q ss_pred ccCCCCCeeEEEecCC-CCChhhHhhhhhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCC
Q 044264 92 SFCSVKRLRSLLIDDN-GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRL 166 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~ 166 (439)
.+...+.|++|++++| ..... -...+...+...+.|++|+|++ |.+. ..+...+...+.|++|+|++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~------n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVG------TRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTT------SCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcC------CCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4567889999999998 63211 1123455677789999999999 5532 234455666788999999999
Q ss_pred CCcc-----CChhHhhccCCcEeec--CCCCcccc----cchhhhhccccceeeccCccc
Q 044264 167 KIEK-----LPETLCELYNLQLLNV--ESCQDLKE----LPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 167 ~~~~-----lp~~i~~l~~L~~L~l--~~~~~~~~----l~~~i~~l~~L~~L~l~~~~~ 215 (439)
.++. +...+...+.|++|++ ++|..... +...+...++|++|++++|..
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 9773 5667788889999999 77773322 344556678899999988764
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.6e-05 Score=70.04 Aligned_cols=261 Identities=11% Similarity=0.106 Sum_probs=130.9
Q ss_pred ccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCcc
Q 044264 92 SFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEK 170 (439)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~ 170 (439)
.+....+++.+.+... +..+-...|..|.+|+.+.+.. + +..+. ..|..+ .|+.+.+..+ ++.
T Consensus 41 ~~~~~~~i~~v~ip~~------vt~Ig~~aF~~C~~L~~I~lp~------~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~ 104 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG------ITSIGEANFNSCYNMTKVTVAS------T--VTSIGDGAFADT-KLQSYTGMER-VKK 104 (379)
T ss_dssp TGGGGGGCSEEEECTT------EEEECTTTTTTCTTCCEEEECT------T--CCEECTTTTTTC-CCCEEEECTT-CCE
T ss_pred ccccccCCEEEEeCCC------ccChHHHHhhCCCCCCEEEeCC------c--ceEechhhhcCC-CCceEECCce-eeE
Confidence 3455678999998764 4556667799999999999965 3 33343 345555 5666666432 555
Q ss_pred CChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccC-CcccccCcccccccceeecc---------
Q 044264 171 LPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYL-PAGIERLTSLRRVEKFVVGR--------- 239 (439)
Q Consensus 171 lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~--------- 239 (439)
+....-...+|+.+.+..+. ..+.. .+..+ +|+.+.+...- ..+ ...+..+.+++.+.+.....
T Consensus 105 I~~~aF~~~~L~~i~lp~~~--~~i~~~~F~~~-~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (379)
T 4h09_A 105 FGDYVFQGTDLDDFEFPGAT--TEIGNYIFYNS-SVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL 179 (379)
T ss_dssp ECTTTTTTCCCSEEECCTTC--CEECTTTTTTC-CCCEEEECTTC--CEECSCTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred eccceeccCCcccccCCCcc--ccccccccccc-eeeeeecccee--eccccchhcccccccccccccccceeeccccee
Confidence 54432233478888886542 22222 22222 34433332211 111 11223333333332211100
Q ss_pred --------------------------ccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 240 --------------------------GVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 240 --------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
.......+..+.+|+.+.+..+.. ......+..+.+|+.+.+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~---------~i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVT---------TLGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCC---------EECTTTTTTCSSCCEEEECTT
T ss_pred cccccceeccccccccccccccccceeEEeecccccccccceeeecccee---------EEccccccCCccceEEEcCCC
Confidence 001112233444555554433210 001123455667777777543
Q ss_pred cCCccCCchhhcccCccEEeecCCCCCCcCC--CCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcc
Q 044264 294 RGNNVHPHWMMSLTDLRILTLSHCINCEHLP--PLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLK 371 (439)
Q Consensus 294 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 371 (439)
...+....+..+.+|+.+.+... ...++ .+..|++|+.+.+.++. ++.++.. .+..+.+|+
T Consensus 251 -v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~-------------aF~~c~~L~ 313 (379)
T 4h09_A 251 -VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPR-------------VFMDCVKLS 313 (379)
T ss_dssp -CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTT-------------TTTTCTTCC
T ss_pred -ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhh-------------hhcCCCCCC
Confidence 22221344556777777777543 22233 26777788888776554 5555432 255677788
Q ss_pred eeeccCCCCccccccCCCcccccCcccceeeec
Q 044264 372 TIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIA 404 (439)
Q Consensus 372 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~ 404 (439)
.+.|.+ +++.+..... ..+.+|+++.+.
T Consensus 314 ~i~lp~--~l~~I~~~aF---~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPT--ALKTIQVYAF---KNCKALSTISYP 341 (379)
T ss_dssp EEECCT--TCCEECTTTT---TTCTTCCCCCCC
T ss_pred EEEcCc--cccEEHHHHh---hCCCCCCEEEEC
Confidence 887753 2444432211 234566666664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=71.25 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=44.5
Q ss_pred cccccceeecCCCCCccC---ChhHhhccCCcEeecCCCCcccccchhhhhcc--ccceeeccCccccccCCc-------
Q 044264 154 KLVHLRYLNLSRLKIEKL---PETLCELYNLQLLNVESCQDLKELPQGFGKLI--NLMYLLNRGTESLRYLPA------- 221 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~--~L~~L~l~~~~~~~~~~~------- 221 (439)
.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. +..+ ..+..+. +|++|++.+|+....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456666666666665533 3455566666666666665 4333 2234444 666666666665444431
Q ss_pred ccccCcccccccc
Q 044264 222 GIERLTSLRRVEK 234 (439)
Q Consensus 222 ~~~~l~~L~~L~l 234 (439)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2456666666653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=70.35 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=28.6
Q ss_pred hccCCcEeecCCCCccc--ccchhhhhccccceeeccCccccccCCcccccCc--ccccccceeeccc
Q 044264 177 ELYNLQLLNVESCQDLK--ELPQGFGKLINLMYLLNRGTESLRYLPAGIERLT--SLRRVEKFVVGRG 240 (439)
Q Consensus 177 ~l~~L~~L~l~~~~~~~--~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~ 240 (439)
++++|+.|+|++|.... .+|..+..+++|+.|+|++|.... + ..+..+. +|++|.+.+|...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCc
Confidence 45555555555555211 223344455555555555554322 1 1222222 5555555555443
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00063 Score=67.13 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=42.1
Q ss_pred CcchHHHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhccCce
Q 044264 4 NKEIDVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNEC 56 (439)
Q Consensus 4 ~~~~~~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~~~~ 56 (439)
+.+++++++ ||++|+++||+++...+ ....|+|||+++++|+.++.+++
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 667899999 99999999999987653 45678999999999999987654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0055 Score=50.95 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=50.7
Q ss_pred HhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCC
Q 044264 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVES 188 (439)
Q Consensus 114 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~ 188 (439)
+...+......-+.|+.|+|+++..++... ...+...+..-..|+.|+|++|.++ .+...+..-..|++|+|+.
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~g-a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKER-IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHH-HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHH-HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 344444555556667777776521111111 1223444555566777777777765 3445555566677777777
Q ss_pred CCcccc----cchhhhhccccceeeccC
Q 044264 189 CQDLKE----LPQGFGKLINLMYLLNRG 212 (439)
Q Consensus 189 ~~~~~~----l~~~i~~l~~L~~L~l~~ 212 (439)
|..... +...+..-+.|++|++++
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 662211 222333344566666654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.02 Score=47.58 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=75.6
Q ss_pred CCCCCeeEEEecCC-CCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc---
Q 044264 94 CSVKRLRSLLIDDN-GDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE--- 169 (439)
Q Consensus 94 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--- 169 (439)
.+-+.|+.|++.++ .... .-...+.+.+..-+.|+.|+|++|++-. .. ...+...+..-+.|++|+|++|.++
T Consensus 38 ~~n~~L~~L~L~~nn~igd-~ga~~la~aL~~N~~L~~L~L~~n~igd-~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTAISD-SE-ARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSCCBH-HH-HTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCH-HHHHHHHHHHhhCCCcCEEEccCCCCCh-HH-HHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 45678999999875 4211 1112345567777889999999933210 00 2234555666788999999999976
Q ss_pred --cCChhHhhccCCcEeecCCCCc--cc-----ccchhhhhccccceeeccCcc
Q 044264 170 --KLPETLCELYNLQLLNVESCQD--LK-----ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 170 --~lp~~i~~l~~L~~L~l~~~~~--~~-----~l~~~i~~l~~L~~L~l~~~~ 214 (439)
.+...+..-..|+.|+++++.. +. .+...+..-+.|+.|++..+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455666667899999986531 22 133345566788888886554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.051 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=23.1
Q ss_pred cccceeecCCCCCccCCh-hHhhccCCcEeecCCCC
Q 044264 156 VHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ 190 (439)
Q Consensus 156 ~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 190 (439)
.+|++|+|++|.++.+|. .+..+++|+.|+|.+|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 356777777777776664 34566677777777665
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.1 Score=40.09 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=39.3
Q ss_pred eeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccc
Q 044264 160 YLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTES 215 (439)
Q Consensus 160 ~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~ 215 (439)
+++.++..++ .+|..+. .+|++|+|++|. +..+|. .+..+++|+.|+|.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 6677777777 7775432 468888888888 666765 467788888888888864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.36 Score=52.36 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCcceecCCCCCceeeeecHHHHHHHHHhccCc
Q 044264 8 DVIGEECFDIIARRSFFQEFVKNDDDEILSCKMHDIVHDFAQFLSKNE 55 (439)
Q Consensus 8 ~~~~~~~~~~Lv~~sl~~~~~~~~~~~~~~~~~hd~~~d~~~~~~~~~ 55 (439)
++.++++|++|+++||++... +++...|+|||+++++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999998654 345567899999999999887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 439 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-04 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.8 bits (107), Expect = 4e-06
Identities = 39/241 (16%), Positives = 82/241 (34%), Gaps = 22/241 (9%)
Query: 99 LRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158
L + +N +TE+ F L L L ++ P LV L
Sbjct: 33 TALLDLQNNK-----ITEIKDGDFKNLKNLHTLILINNKISKI------SPGAFAPLVKL 81
Query: 159 RYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRY 218
L LS+ ++++LPE + + ++ +++ + ++ L +S
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141
Query: 219 LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEA 278
+ + L + + +L +L L GN K + +
Sbjct: 142 ENGAFQGMKKLSY---IRIADTNITTIPQGLPPSLTELHL---DGN-----KITKVDAAS 190
Query: 279 LQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFY 338
L+ NL LG+ + V + + LR L L++ + L ++ +Y +
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250
Query: 339 S 339
+
Sbjct: 251 N 251
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 16/198 (8%)
Query: 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLI 203
++++PK++ L+L KI ++ + L NL L + + + K P F L+
Sbjct: 22 LEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79
Query: 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHG 263
L L L+ LP + + RV + + + N+ +++L
Sbjct: 80 KLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138
Query: 264 NEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHL 323
+ +K L + N+ L L L +
Sbjct: 139 SGIENG-----------AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187
Query: 324 PP-LGKLPSLEQLYFYSM 340
L L +L +L
Sbjct: 188 AASLKGLNNLAKLGLSFN 205
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 24/207 (11%)
Query: 131 LDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQ 190
L + + N P I +L L+L+ +++ + TL L NL L++ + Q
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ 252
Query: 191 DLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENK 250
P L L L + P + LT+L +E
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN 308
Query: 251 KNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNV-HPHWMMSLTDL 309
+ L + N + + P +L L + N V + +LT++
Sbjct: 309 LTYLTL-----YFNN----------ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNI 353
Query: 310 RILTLSHCINCEHLPPLGKLPSLEQLY 336
L+ H L PL L + QL
Sbjct: 354 NWLSAGHN-QISDLTPLANLTRITQLG 379
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 135 MFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKE 194
++ N EI + L LN+S K+ +LP L L S L E
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA----SFNHLAE 318
Query: 195 LPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLR 230
+P+ L L N LR P E + LR
Sbjct: 319 VPELPQNLKQLHVEYNP----LREFPDIPESVEDLR 350
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 140 SWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELP 196
N +P+ + +L L LN+S + L + + + L P
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 37.7 bits (86), Expect = 0.001
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNL 181
F+E + A + ++ I+++ + L ++L LS IEK+ L + NL
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENL 72
Query: 182 QLLNVESCQ 190
++L++
Sbjct: 73 RILSLGRNL 81
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (84), Expect = 0.003
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 135 MFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKE 194
+ N + L++SR +I LP L NL+ L S +LK+
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKK 237
Query: 195 LP 196
LP
Sbjct: 238 LP 239
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.1 bits (80), Expect = 0.004
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 147 EIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLM 206
+ ++E+L+ + +L+LS ++ LP L L L++L + +
Sbjct: 11 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 70
Query: 207 YLLNRGTESLRYLPAGIERLTSLRRV 232
L N + + L +
Sbjct: 71 LLCNNRLQQSA-AIQPLVSCPRLVLL 95
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 439 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.89 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.87 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.86 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.83 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.82 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.75 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.75 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.72 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.65 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.64 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.51 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.37 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.36 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.34 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.33 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.26 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.25 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.17 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.15 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.1 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.09 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.09 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.79 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.77 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.94 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.94 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.72 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.58 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.35 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.02 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.89 E-value=2.7e-23 Score=189.96 Aligned_cols=249 Identities=19% Similarity=0.179 Sum_probs=161.0
Q ss_pred ceeEEEEEcCCCC---CcCcccCCCCCeeEEEecC-CCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccc
Q 044264 75 NVRHSMVKLGKGA---PFPISFCSVKRLRSLLIDD-NGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPK 150 (439)
Q Consensus 75 ~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (439)
+++.+.+.+.... .+|..+.++++|++|++++ |. +.+.+|..|.++++|++|++++ +.+.+..+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~-----l~g~iP~~i~~L~~L~~L~Ls~------N~l~~~~~~ 119 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITH------TNVSGAIPD 119 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEE------ECCEEECCG
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccc-----cccccccccccccccchhhhcc------ccccccccc
Confidence 5667777666553 4667777777777777765 33 4555666677777777777777 664555555
Q ss_pred ccccccccceeecCCCC-CccCChhHhhccCCcEeecCCCCcccccchhhhhcccc-ceeeccCccccccCCcccccCcc
Q 044264 151 NIEKLVHLRYLNLSRLK-IEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINL-MYLLNRGTESLRYLPAGIERLTS 228 (439)
Q Consensus 151 ~~~~l~~L~~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~ 228 (439)
.+..+..|+++++++|. ...+|..+++++.|+++++++|.....+|..+..+.++ +.+.+..|......|..+..+..
T Consensus 120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~ 199 (313)
T d1ogqa_ 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 56677777777777776 34566777777777777777777555677767666665 66666666655555555554443
Q ss_pred cccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccC
Q 044264 229 LRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTD 308 (439)
Q Consensus 229 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 308 (439)
+ .+++..+...+..+..+..+++|+.+++..+.. ...+..+..+++|+.|++++|.+...+|.+++.+++
T Consensus 200 ~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l---------~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~ 269 (313)
T d1ogqa_ 200 A-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL---------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp S-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEE---------CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred c-ccccccccccccccccccccccccccccccccc---------cccccccccccccccccCccCeecccCChHHhCCCC
Confidence 3 355555555555666666777777777666531 111334566677777777777766444677777777
Q ss_pred ccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCee
Q 044264 309 LRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVK 344 (439)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 344 (439)
|+.|++++|.+...+|.++.+++|+.+++++|+.+.
T Consensus 270 L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence 777777777666566666667777777777766443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.87 E-value=2e-22 Score=184.06 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=187.0
Q ss_pred CCeeEEEecCCCCChhhHhh--hhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-Ch
Q 044264 97 KRLRSLLIDDNGDDEFWLTE--VLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL-PE 173 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~ 173 (439)
.+++.|++.++. +.+ .+|..+.++++|++|+|++| +.+.+.+|+.++++++|++|+|++|.+..+ +.
T Consensus 50 ~~v~~L~L~~~~-----l~g~~~lp~~l~~L~~L~~L~Ls~~-----N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~ 119 (313)
T d1ogqa_ 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGI-----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEE-----TTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred EEEEEEECCCCC-----CCCCCCCChHHhcCccccccccccc-----cccccccccccccccccchhhhccccccccccc
Confidence 479999999986 333 46788999999999999862 344667899999999999999999998755 45
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccc-ccccceeeccccccccccccccC
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL-RRVEKFVVGRGVARSSELENKKN 252 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~l~~l~~ 252 (439)
.+..+.+|+++++++|.....+|..++++++|+++++++|.....+|..+..+.++ +.+.+..+...+..+..+..+..
T Consensus 120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~ 199 (313)
T d1ogqa_ 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 68889999999999998778889999999999999999998777888888887776 67777777766666666666644
Q ss_pred cceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCC
Q 044264 253 LIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPS 331 (439)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~ 331 (439)
+ .+++..+. ....++..+..+++|+.+++.++..... +..+..+++|+.|++++|.+...+|. ++++++
T Consensus 200 ~-~l~l~~~~--------~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~ 269 (313)
T d1ogqa_ 200 A-FVDLSRNM--------LEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp S-EEECCSSE--------EEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred c-cccccccc--------cccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCC
Confidence 4 46665542 1223355667778888888888777665 45667778888888888877766765 777888
Q ss_pred cCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 332 LEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 332 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
|++|++++|.....+|. ...+++|+.+++++++
T Consensus 270 L~~L~Ls~N~l~g~iP~---------------~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 270 LHSLNVSFNNLCGEIPQ---------------GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEEECCC---------------STTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccccCCC---------------cccCCCCCHHHhCCCc
Confidence 88888888774445543 3345566666666554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.86 E-value=4.1e-21 Score=180.43 Aligned_cols=300 Identities=19% Similarity=0.170 Sum_probs=203.4
Q ss_pred CCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccc
Q 044264 73 GQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNI 152 (439)
Q Consensus 73 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 152 (439)
..+++.+.+.+..+..++ .+..+++|++|++++|. +.. ++. +..+++|++|++++ |. +..+++ +
T Consensus 43 l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~-----l~~-l~~-l~~L~~L~~L~L~~------n~-i~~i~~-l 106 (384)
T d2omza2 43 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ-----LTD-ITP-LKNLTKLVDILMNN------NQ-IADITP-L 106 (384)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC-----CCC-CGG-GTTCTTCCEEECCS------SC-CCCCGG-G
T ss_pred hCCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCc-----CCC-Ccc-ccCCcccccccccc------cc-cccccc-c
Confidence 356888888888887764 46778899999999987 333 333 78889999999988 66 444443 7
Q ss_pred ccccccceeecCCCCCccCChhHhhccCCcEeecCCCCc-----------------------------------------
Q 044264 153 EKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQD----------------------------------------- 191 (439)
Q Consensus 153 ~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~----------------------------------------- 191 (439)
+.+++|+.|+++++.++.++... ....+..+....+..
T Consensus 107 ~~l~~L~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (384)
T d2omza2 107 ANLTNLTGLTLFNNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185 (384)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 88889999999888876554322 222233322211110
Q ss_pred ccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCC
Q 044264 192 LKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKK 271 (439)
Q Consensus 192 ~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 271 (439)
....+.....+++++.+.++++.. ..++ ....+++|+.|++.++.... ...+..+++|+.|++.++....
T Consensus 186 ~~~~~~~~~~l~~~~~l~l~~n~i-~~~~-~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~------ 255 (384)
T d2omza2 186 KVSDISVLAKLTNLESLIATNNQI-SDIT-PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN------ 255 (384)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCC-CCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC------
T ss_pred ccccccccccccccceeeccCCcc-CCCC-cccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCC------
Confidence 011223455677777777777663 3332 24556778888777766543 2356777888888887764221
Q ss_pred hHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccc
Q 044264 272 DEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFL 351 (439)
Q Consensus 272 ~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 351 (439)
+ ..+..+++|++|+++++..... ..+..++.++.+++..|... .++.+..+++++.|++++|. ++.++.
T Consensus 256 ---~-~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~-~~~~~~~~~~l~~L~ls~n~-l~~l~~--- 324 (384)
T d2omza2 256 ---L-APLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNN-ISDISP--- 324 (384)
T ss_dssp ---C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCS-CCGGGGGCTTCSEEECCSSC-CSCCGG---
T ss_pred ---C-CcccccccCCEeeccCcccCCC--Cccccccccccccccccccc-cccccchhcccCeEECCCCC-CCCCcc---
Confidence 1 2356677888888888777663 34667778888888877654 34446777888888888886 443332
Q ss_pred cccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEEcCC
Q 044264 352 GVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEIWGC 430 (439)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i~~c 430 (439)
+..+|+|++|++++| .++.++ ....+|+|++|++++| .++.++. +.++++|+.|+|+++
T Consensus 325 ------------l~~l~~L~~L~L~~n-~l~~l~-----~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 325 ------------VSSLTKLQRLFFANN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp ------------GGGCTTCCEEECCSS-CCCCCG-----GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred ------------cccCCCCCEEECCCC-CCCCCh-----hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence 566899999999998 566554 1256899999999998 6778764 788999999999875
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=1.1e-19 Score=170.40 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=202.0
Q ss_pred cCCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccc
Q 044264 72 LGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKN 151 (439)
Q Consensus 72 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 151 (439)
...+++.+.+.++....++. +.++++|+.|++++|. +... +. +..+++|+.|+++++.. ..++.
T Consensus 64 ~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-----i~~i-~~-l~~l~~L~~L~~~~~~~-------~~~~~- 127 (384)
T d2omza2 64 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-----IADI-TP-LANLTNLTGLTLFNNQI-------TDIDP- 127 (384)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-----CCCC-GG-GTTCTTCCEEECCSSCC-------CCCGG-
T ss_pred cCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccc-----cccc-cc-ccccccccccccccccc-------ccccc-
Confidence 35789999999999988874 8899999999999998 3333 32 78999999999998432 11111
Q ss_pred cccccccceeec-------------------------------------------CCCCCccCChhHhhccCCcEeecCC
Q 044264 152 IEKLVHLRYLNL-------------------------------------------SRLKIEKLPETLCELYNLQLLNVES 188 (439)
Q Consensus 152 ~~~l~~L~~L~L-------------------------------------------~~~~~~~lp~~i~~l~~L~~L~l~~ 188 (439)
......+..+.. ..+ ....+.....+++++.+++++
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~l~~ 206 (384)
T d2omza2 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATN 206 (384)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc-ccccccccccccccceeeccC
Confidence 011111111111 111 112234567789999999999
Q ss_pred CCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhc
Q 044264 189 CQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERK 268 (439)
Q Consensus 189 ~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 268 (439)
+. +..++. ...+++|+.|++++|.. ..++ .+..+++|+.+++..|...+. ..++.+++|+.|+++++....
T Consensus 207 n~-i~~~~~-~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~l~~--- 277 (384)
T d2omza2 207 NQ-ISDITP-LGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISN--- 277 (384)
T ss_dssp SC-CCCCGG-GGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC---
T ss_pred Cc-cCCCCc-ccccCCCCEEECCCCCC-CCcc-hhhcccccchhccccCccCCC--CcccccccCCEeeccCcccCC---
Confidence 87 555554 57788999999999874 4443 578889999999988876543 248889999999998874221
Q ss_pred cCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCC
Q 044264 269 RKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGD 348 (439)
Q Consensus 269 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 348 (439)
+ ..+..++.++.+.+..+.... +..+..+++++.|++++|.+. .++.+..+++|+.|++++|. ++.++.
T Consensus 278 ------~-~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~-~l~~l~~l~~L~~L~L~~n~-l~~l~~ 346 (384)
T d2omza2 278 ------I-SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFANNK-VSDVSS 346 (384)
T ss_dssp ------C-GGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCS-CCGGGGGCTTCCEEECCSSC-CCCCGG
T ss_pred ------C-Ccccccccccccccccccccc--ccccchhcccCeEECCCCCCC-CCcccccCCCCCEEECCCCC-CCCChh
Confidence 1 236678899999999998877 556789999999999999765 45557889999999999996 555442
Q ss_pred ccccccCCCCCCCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeeccc
Q 044264 349 EFLGVESDHGRASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARC 406 (439)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c 406 (439)
+..+|+|++|+++++ .++++. +...+++|+.|+|+++
T Consensus 347 ---------------l~~l~~L~~L~l~~N-~l~~l~-----~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 347 ---------------LANLTNINWLSAGHN-QISDLT-----PLANLTRITQLGLNDQ 383 (384)
T ss_dssp ---------------GGGCTTCCEEECCSS-CCCBCG-----GGTTCTTCSEEECCCE
T ss_pred ---------------HcCCCCCCEEECCCC-cCCCCh-----hhccCCCCCEeeCCCC
Confidence 566899999999887 455543 2356899999999886
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.83 E-value=1.8e-19 Score=163.60 Aligned_cols=266 Identities=17% Similarity=0.122 Sum_probs=170.1
Q ss_pred EEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccc
Q 044264 79 SMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158 (439)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 158 (439)
+...+.....+|..+. +++++|++++|. +....+..|..+++|++|++++ +.+....|..+..+++|
T Consensus 15 ~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~-----i~~l~~~~f~~l~~L~~L~l~~------n~~~~i~~~~f~~l~~L 81 (305)
T d1xkua_ 15 VQCSDLGLEKVPKDLP--PDTALLDLQNNK-----ITEIKDGDFKNLKNLHTLILIN------NKISKISPGAFAPLVKL 81 (305)
T ss_dssp EECTTSCCCSCCCSCC--TTCCEEECCSSC-----CCCBCTTTTTTCTTCCEEECCS------SCCCCBCTTTTTTCTTC
T ss_pred EEecCCCCCccCCCCC--CCCCEEECcCCc-----CCCcChhHhhcccccccccccc------ccccccchhhhhCCCcc
Confidence 3344445677777664 578899998887 4554445688888999999988 66444446678888999
Q ss_pred ceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcccc--ccCCcccccCcccccccce
Q 044264 159 RYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESL--RYLPAGIERLTSLRRVEKF 235 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~ 235 (439)
++|++++|.++.+|..+ ...++.|++.++. +..++. .+.....++.+....+... ...+..+..+++|+.+.+.
T Consensus 82 ~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~ 158 (305)
T d1xkua_ 82 ERLYLSKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158 (305)
T ss_dssp CEEECCSSCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEecccCCccCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence 99999999888888643 4578888888877 555544 4556667777777665432 2223445667777777776
Q ss_pred eeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeec
Q 044264 236 VVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLS 315 (439)
Q Consensus 236 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 315 (439)
.+.... .+. ..+++|+.|++.++... ...+..+..++.+++|.++++......+.++..+++|+.|+++
T Consensus 159 ~n~l~~-l~~--~~~~~L~~L~l~~n~~~--------~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~ 227 (305)
T d1xkua_ 159 DTNITT-IPQ--GLPPSLTELHLDGNKIT--------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227 (305)
T ss_dssp SSCCCS-CCS--SCCTTCSEEECTTSCCC--------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred cCCccc-cCc--ccCCccCEEECCCCcCC--------CCChhHhhccccccccccccccccccccccccccccceeeecc
Confidence 665432 222 22467777777766422 1223456667777777777777776656667777778888887
Q ss_pred CCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCCC
Q 044264 316 HCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDMY 379 (439)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (439)
+|.+......+..+++|+.|++++|. ++.++...... .......+.|+.|.+++++
T Consensus 228 ~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~-------~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 228 NNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP-------PGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC-------SSCCTTSCCCSEEECCSSS
T ss_pred cccccccccccccccCCCEEECCCCc-cCccChhhccC-------cchhcccCCCCEEECCCCc
Confidence 77654332236777777777777765 55554322111 0112334556666666654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=1.5e-19 Score=164.20 Aligned_cols=194 Identities=23% Similarity=0.200 Sum_probs=91.1
Q ss_pred CceeEEeCCcccccccccccccccc-ccccccccceeecCCCCCccC-ChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 126 TCLRALDFAMFQMWSWNGFIKEIPK-NIEKLVHLRYLNLSRLKIEKL-PETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
+++++|++++ |. +..+|+ .|.++++|++|++++|.+..+ |..+.++++|++|++++|. ++.+|.. ...
T Consensus 31 ~~l~~L~Ls~------N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~--~~~ 100 (305)
T d1xkua_ 31 PDTALLDLQN------NK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK--MPK 100 (305)
T ss_dssp TTCCEEECCS------SC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS--CCT
T ss_pred CCCCEEECcC------Cc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc--hhh
Confidence 4566666665 54 344443 455566666666666665554 3345556666666666655 4455442 223
Q ss_pred ccceeeccCccccccCC-cccccCcccccccceeecc--ccccccccccccCcceeeecccCCcchhccCChHHHHHhCC
Q 044264 204 NLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFVVGR--GVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQ 280 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 280 (439)
.++.|.+..+.. ..++ ..+.....+..+....+.. .......+..+++|+.+.+..+... .++ ..
T Consensus 101 ~l~~L~~~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~---------~l~--~~ 168 (305)
T d1xkua_ 101 TLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---------TIP--QG 168 (305)
T ss_dssp TCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---------SCC--SS
T ss_pred hhhhhhccccch-hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc---------ccC--cc
Confidence 555555555442 2222 1222333333333332221 1122233445555555555544211 011 11
Q ss_pred CCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 281 PPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
.+++|++|++.++......+..+..++.++.|++++|......+. +.++++|++|++++|.
T Consensus 169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~ 230 (305)
T d1xkua_ 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230 (305)
T ss_dssp CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence 244555555555555444344455555555555555544433222 4455555555555553
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=9.9e-19 Score=156.88 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=125.5
Q ss_pred EEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccc
Q 044264 80 MVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLR 159 (439)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 159 (439)
.....+...+|..+. +.++.|++++|. +....+..|..+++|++|++++ +.+....+..+..+..++
T Consensus 17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N~-----i~~i~~~~f~~l~~L~~L~ls~------n~l~~i~~~~~~~~~~~~ 83 (284)
T d1ozna_ 17 SCPQQGLQAVPVGIP--AASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHS------NVLARIDAAAFTGLALLE 83 (284)
T ss_dssp ECCSSCCSSCCTTCC--TTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCTTCC
T ss_pred EcCCCCCCccCCCCC--CCCCEEECcCCc-----CCCCCHHHhhcccccccccccc------cccccccccccccccccc
Confidence 334444566665543 456777777776 4544555677777777777777 553333344455566666
Q ss_pred eeecCCCC-CccCC-hhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccC-CcccccCccccccccee
Q 044264 160 YLNLSRLK-IEKLP-ETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYL-PAGIERLTSLRRVEKFV 236 (439)
Q Consensus 160 ~L~L~~~~-~~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 236 (439)
.+....+. ++.++ ..+.++++|++|++++|......+..+..+.+|+.+++.+|.. +.+ +..+..+++|+.|++.+
T Consensus 84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~ 162 (284)
T d1ozna_ 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHG 162 (284)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred ccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhccccc
Confidence 66654333 55553 4566777777777777763222334456667777777777664 333 34456666677777666
Q ss_pred eccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecC
Q 044264 237 VGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSH 316 (439)
Q Consensus 237 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 316 (439)
|......+..+..+++|+.+.+.++... ...+..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 163 N~l~~l~~~~f~~l~~L~~l~l~~N~l~--------~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 163 NRISSVPERAFRGLHSLDRLLLHQNRVA--------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (284)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred Ccccccchhhhccccccchhhhhhcccc--------ccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence 6655444555556666666666555311 11134445555555555555555554334455555555555555
Q ss_pred CCC
Q 044264 317 CIN 319 (439)
Q Consensus 317 ~~~ 319 (439)
|..
T Consensus 235 N~l 237 (284)
T d1ozna_ 235 NPW 237 (284)
T ss_dssp SCE
T ss_pred CCC
Confidence 543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.4e-18 Score=150.97 Aligned_cols=183 Identities=19% Similarity=0.154 Sum_probs=110.6
Q ss_pred ccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCccc
Q 044264 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGI 223 (439)
Q Consensus 145 ~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 223 (439)
...+|+.+. +++++|+|++|.++.+|. .+.++++|++|++++|. ++.+|. ++.+++|++|++++|. +...+..+
T Consensus 22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~ 96 (266)
T d1p9ag_ 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLG 96 (266)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSSC-CSSCCCCT
T ss_pred CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-cccccccccccccccc-cccccccc
Confidence 344554432 356666666666666553 45666666666666665 445543 4556666666666665 33444555
Q ss_pred ccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchh
Q 044264 224 ERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWM 303 (439)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~ 303 (439)
..+++|+.|++..+.........+..+.+++.|.+..+.... -.+..+..+++|+.+++++|.+....+..+
T Consensus 97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~--------l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~ 168 (266)
T d1p9ag_ 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------LPPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (266)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred ccccccccccccccccceeeccccccccccccccccccccce--------eccccccccccchhcccccccccccCcccc
Confidence 566666666666655554445555566666666666653111 112334556777777777777766544556
Q ss_pred hcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 304 MSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
..+++|++|+|++|.+. .+|. +..+++|+.|++++|+
T Consensus 169 ~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 67778888888877765 4543 6667778888887776
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.5e-18 Score=149.04 Aligned_cols=195 Identities=17% Similarity=0.067 Sum_probs=122.9
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVH 157 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 157 (439)
.+...+.....+|..+. ++++.|++++|. +....+..|..+++|++|++++ |. +..++. ++.+++
T Consensus 14 ~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~-----i~~l~~~~f~~l~~L~~L~L~~------N~-l~~l~~-~~~l~~ 78 (266)
T d1p9ag_ 14 EVNCDKRNLTALPPDLP--KDTTILHLSENL-----LYTFSLATLMPYTRLTQLNLDR------AE-LTKLQV-DGTLPV 78 (266)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECTTSC-----CSEEEGGGGTTCTTCCEEECTT------SC-CCEEEC-CSCCTT
T ss_pred EEEccCCCCCeeCcCcC--cCCCEEECcCCc-----CCCcCHHHhhcccccccccccc------cc-cccccc-cccccc
Confidence 34444455566666553 467778887776 4455555677777788888877 65 444543 466777
Q ss_pred cceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceee
Q 044264 158 LRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVV 237 (439)
Q Consensus 158 L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (439)
|++|++++|.++..+..+..+++|++|+++++......+..+..+.+++.|.+.+|......+..+..+++|+.+++.+|
T Consensus 79 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N 158 (266)
T d1p9ag_ 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (266)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence 77777777777777777777777777777777633333445566777777777766532222233344555555555544
Q ss_pred ccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEeecCC
Q 044264 238 GRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHC 317 (439)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 317 (439)
......+ ..+..+++|++|+|++|.+..+ |..+..+++|+.|+|++|
T Consensus 159 ~l~~~~~--------------------------------~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 159 NLTELPA--------------------------------GLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp CCSCCCT--------------------------------TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSC
T ss_pred cccccCc--------------------------------cccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCC
Confidence 4332222 3345567777777777777654 777777888888888887
Q ss_pred CCC
Q 044264 318 INC 320 (439)
Q Consensus 318 ~~~ 320 (439)
...
T Consensus 206 p~~ 208 (266)
T d1p9ag_ 206 PWL 208 (266)
T ss_dssp CBC
T ss_pred CCC
Confidence 543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.3e-17 Score=147.80 Aligned_cols=200 Identities=20% Similarity=0.152 Sum_probs=90.3
Q ss_pred ceeEEeCCccccccccccccccc-cccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCccccc-chhhhhcc
Q 044264 127 CLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKEL-PQGFGKLI 203 (439)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l-~~~i~~l~ 203 (439)
.+++|+|++ |. +..+| ..+..+++|++|+++++.+..++. .+..+..++.+....+..+..+ +..+++++
T Consensus 33 ~~~~L~Ls~------N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~ 105 (284)
T d1ozna_ 33 ASQRIFLHG------NR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (284)
T ss_dssp TCSEEECTT------SC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCEEECcC------Cc-CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence 455666665 54 23333 345555666666666655554432 2344555555555444334443 23455555
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCC
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPP 283 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (439)
+|++|++++|......+..+..+++|+.+++..+......+..+..+++|+.|+++++.... ..+..+..++
T Consensus 106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~--------l~~~~f~~l~ 177 (284)
T d1ozna_ 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--------VPERAFRGLH 177 (284)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--------ECTTTTTTCT
T ss_pred cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc--------cchhhhcccc
Confidence 56666655555322222334445555555555554443333344444444444444442110 0012333444
Q ss_pred CccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCC-CCCcCCcCeeeecccc
Q 044264 284 NLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPP-LGKLPSLEQLYFYSMG 341 (439)
Q Consensus 284 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 341 (439)
+|+.+.+.+|......|.++..+++|+.|++++|.+....+. ++.+++|++|++++|+
T Consensus 178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 444444444444443334444444444444444443332221 3444444444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=5.5e-16 Score=133.80 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=46.0
Q ss_pred CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCC
Q 044264 280 QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGR 359 (439)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 359 (439)
..+++|++|.+.++.... ...+..+++|+.|++++|.. +.++.++.+++|++|++++|. ++.++.
T Consensus 148 ~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~l-~~l~~l~~l~~L~~L~Ls~N~-lt~i~~----------- 212 (227)
T d1h6ua2 148 AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQ-ISDVSP----------- 212 (227)
T ss_dssp GGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECTTSC-CCBCGG-----------
T ss_pred cccccccccccccccccc--chhhcccccceecccCCCcc-CCChhhcCCCCCCEEECcCCc-CCCCcc-----------
Confidence 345566666666665554 23355666666666666643 344555666667777776664 444432
Q ss_pred CCCCCcCCCCcceeeccC
Q 044264 360 ASSSVVAFPKLKTIQFWD 377 (439)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~ 377 (439)
+..+++|+.|++++
T Consensus 213 ----l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 213 ----LANTSNLFIVTLTN 226 (227)
T ss_dssp ----GTTCTTCCEEEEEE
T ss_pred ----cccCCCCCEEEeeC
Confidence 44566677666653
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=2.2e-16 Score=136.33 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=58.1
Q ss_pred CCCCCccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCC
Q 044264 280 QPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGR 359 (439)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 359 (439)
...+.++.+.+..+.... ...+..+++|+.|++++|... ..+.++++++|++|++++|. ++.++.
T Consensus 126 ~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~Ls~n~-l~~l~~----------- 190 (227)
T d1h6ua2 126 AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNK-ISDISP----------- 190 (227)
T ss_dssp TTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCGG-----------
T ss_pred ccccchhhhhchhhhhch--hhhhccccccccccccccccc-cchhhcccccceecccCCCc-cCCChh-----------
Confidence 344555666665555544 334556667777777666543 23335666777777776664 444332
Q ss_pred CCCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecc
Q 044264 360 ASSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIAR 405 (439)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~ 405 (439)
+..+++|++|++++| +++++..- ..+++|+.|++++
T Consensus 191 ----l~~l~~L~~L~Ls~N-~lt~i~~l-----~~l~~L~~L~lsn 226 (227)
T d1h6ua2 191 ----LASLPNLIEVHLKNN-QISDVSPL-----ANTSNLFIVTLTN 226 (227)
T ss_dssp ----GGGCTTCCEEECTTS-CCCBCGGG-----TTCTTCCEEEEEE
T ss_pred ----hcCCCCCCEEECcCC-cCCCCccc-----ccCCCCCEEEeeC
Confidence 445677777777766 46665431 3466777776653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.65 E-value=2.2e-15 Score=138.84 Aligned_cols=136 Identities=24% Similarity=0.265 Sum_probs=87.7
Q ss_pred CceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccc
Q 044264 74 QNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIE 153 (439)
Q Consensus 74 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 153 (439)
.+++++.+.......+|.. .++|++|++++|. +. .+|.. +.+|+.|++++ +. ...++..
T Consensus 38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~-----l~-~lp~~---~~~L~~L~l~~------n~-l~~l~~l-- 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNS-----LT-ELPEL---PQSLKSLLVDN------NN-LKALSDL-- 96 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSC-----CS-SCCCC---CTTCCEEECCS------SC-CSCCCSC--
T ss_pred cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC-----Cc-ccccc---hhhhhhhhhhh------cc-cchhhhh--
Confidence 4577888888888778754 4678888888876 33 44542 45788888887 55 3334321
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+.|++|++++|.+..+|. ++.+++|++|+++++. ....+.. ...+..+.+..+... .+..+..++.++.+.
T Consensus 97 -p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~ 168 (353)
T d1jl5a_ 97 -PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIY 168 (353)
T ss_dssp -CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred -ccccccccccccccccccc-hhhhccceeecccccc-ccccccc---cccccchhhcccccc--ccccccccccceecc
Confidence 2458888888888888875 5678888888888877 4444443 344555555544321 123455667777776
Q ss_pred ceeec
Q 044264 234 KFVVG 238 (439)
Q Consensus 234 l~~~~ 238 (439)
+..+.
T Consensus 169 l~~n~ 173 (353)
T d1jl5a_ 169 ADNNS 173 (353)
T ss_dssp CCSSC
T ss_pred ccccc
Confidence 65544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.64 E-value=2.2e-15 Score=138.80 Aligned_cols=291 Identities=21% Similarity=0.247 Sum_probs=152.0
Q ss_pred EeeCCCCCccccccCCceeEEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcC-CceeEEeCCccc
Q 044264 59 VEIDGREEPFIDSLGQNVRHSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDEL-TCLRALDFAMFQ 137 (439)
Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 137 (439)
.+........++...+.++.+.+.++.+..+|..+ .+|+.|++.++. +. .++ .+ +.|++|++++
T Consensus 43 LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~-----l~-~l~----~lp~~L~~L~L~~-- 107 (353)
T d1jl5a_ 43 LELNNLGLSSLPELPPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-----LK-ALS----DLPPLLEYLGVSN-- 107 (353)
T ss_dssp EECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-----CS-CCC----SCCTTCCEEECCS--
T ss_pred EEeCCCCCCCCCCCCCCCCEEECCCCCCcccccch---hhhhhhhhhhcc-----cc-hhh----hhccccccccccc--
Confidence 34444555556666677888888777777777543 467777777776 11 222 22 3588888887
Q ss_pred cccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccc
Q 044264 138 MWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLR 217 (439)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~ 217 (439)
+. +..+|. ++.+++|++|+++++.+...+... ..+..+.+..+.. .. +..+..++.++.+.+..+.. .
T Consensus 108 ----n~-l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~-~~-~~~l~~l~~l~~L~l~~n~~-~ 175 (353)
T d1jl5a_ 108 ----NQ-LEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL-EE-LPELQNLPFLTAIYADNNSL-K 175 (353)
T ss_dssp ----SC-CSSCCC-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-SS-CCCCTTCTTCCEEECCSSCC-S
T ss_pred ----cc-cccccc-hhhhccceeecccccccccccccc---ccccchhhccccc-cc-cccccccccceecccccccc-c
Confidence 65 455654 567788888888887777666433 4455666655542 22 22356677777777776653 2
Q ss_pred cCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCc
Q 044264 218 YLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNN 297 (439)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 297 (439)
..+.... ..+.+....... .....+..++.|+.+.++.+.... ......++..+.+..+....
T Consensus 176 ~~~~~~~---~~~~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~------------~~~~~~~l~~~~~~~~~~~~ 238 (353)
T d1jl5a_ 176 KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT------------LPDLPPSLEALNVRDNYLTD 238 (353)
T ss_dssp SCCCCCT---TCCEEECCSSCC--SSCCCCTTCTTCCEEECCSSCCSS------------CCSCCTTCCEEECCSSCCSC
T ss_pred ccccccc---cccccccccccc--cccccccccccccccccccccccc------------cccccccccccccccccccc
Confidence 2222111 111111111111 122234556667777766652111 11223455555555554433
Q ss_pred cCCchhhcccCccEEeecCCCCC----------------CcCCC-CCCcCCcCeeeeccccCeeEeCCccccccCCCCCC
Q 044264 298 VHPHWMMSLTDLRILTLSHCINC----------------EHLPP-LGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRA 360 (439)
Q Consensus 298 ~l~~~~~~~~~L~~L~l~~~~~~----------------~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 360 (439)
. +.. .+.+...++..+... ..++. ...+++|++|++++|. +..++.
T Consensus 239 ~-~~~---~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~------------ 301 (353)
T d1jl5a_ 239 L-PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA------------ 301 (353)
T ss_dssp C-CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC------------
T ss_pred c-ccc---cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCcccc------------
Confidence 2 111 122222222221110 01111 2235677777777765 444432
Q ss_pred CCCCcCCCCcceeeccCCCCccccccCCCcccccCcccceeeecccccccCCCCCCCCCCCccEEEE
Q 044264 361 SSSVVAFPKLKTIQFWDMYVLKEWDYGDTIKGEIMPRLSSLCIARCPTLRALPDHLLQTTTLQKLEI 427 (439)
Q Consensus 361 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~i~~c~~l~~l~~~l~~~~~L~~L~i 427 (439)
.+++|+.|+++++ .+++++ ..+++|++|++++|+ ++++|... .+|+.|.+
T Consensus 302 -----~~~~L~~L~L~~N-~L~~l~-------~~~~~L~~L~L~~N~-L~~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 302 -----LPPRLERLIASFN-HLAEVP-------ELPQNLKQLHVEYNP-LREFPDIP---ESVEDLRM 351 (353)
T ss_dssp -----CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSSC-CSSCCCCC---TTCCEEEC
T ss_pred -----ccCCCCEEECCCC-cCCccc-------cccCCCCEEECcCCc-CCCCCccc---cccCeeEC
Confidence 2567777777665 344443 234667777777774 66776532 24555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=3.9e-15 Score=126.54 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=24.9
Q ss_pred ccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcc
Q 044264 155 LVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 155 l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~ 214 (439)
+..|++|+++++.++.++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.
T Consensus 45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~-~~~l~~L~~L~l~~n~ 101 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK 101 (210)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccCccc-cccCcccccccccccc
Confidence 344444444444444443 23444444444444443 333332 3444444444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=5.9e-15 Score=124.33 Aligned_cols=146 Identities=24% Similarity=0.265 Sum_probs=72.5
Q ss_pred cccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccccccc
Q 044264 154 KLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVE 233 (439)
Q Consensus 154 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 233 (439)
.+.++++|+++++.++.++ .+..+++|++|++++|. +..++. ++++++|++|++++|.. ..++ .++.+++|+.|+
T Consensus 38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLT 112 (199)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEE
T ss_pred HhcCCCEEECCCCCCCCcc-ccccCCCcCcCcccccc-ccCccc-ccCCccccccccccccc-cccc-cccccccccccc
Confidence 4556666666666665553 35556666666666665 444443 55666666666665542 2222 244444444444
Q ss_pred ceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeeccCCccCCchhhcccCccEEe
Q 044264 234 KFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQYRGNNVHPHWMMSLTDLRILT 313 (439)
Q Consensus 234 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 313 (439)
+..+.... ... +..+++|+.|++++|.... ...+..+++|+.|+
T Consensus 113 l~~~~~~~--~~~--------------------------------~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~ 156 (199)
T d2omxa2 113 LFNNQITD--IDP--------------------------------LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN 156 (199)
T ss_dssp CCSSCCCC--CGG--------------------------------GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEE
T ss_pred cccccccc--ccc--------------------------------cchhhhhHHhhhhhhhhcc--cccccccccccccc
Confidence 44332211 111 2334444555554444433 22344555555555
Q ss_pred ecCCCCCCcCCCCCCcCCcCeeeecccc
Q 044264 314 LSHCINCEHLPPLGKLPSLEQLYFYSMG 341 (439)
Q Consensus 314 l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (439)
+.+|... .++.++++++|+.|++++|.
T Consensus 157 l~~n~l~-~l~~l~~l~~L~~L~ls~N~ 183 (199)
T d2omxa2 157 FSSNQVT-DLKPLANLTTLERLDISSNK 183 (199)
T ss_dssp CCSSCCC-CCGGGTTCTTCCEEECCSSC
T ss_pred ccccccc-CCccccCCCCCCEEECCCCC
Confidence 5555432 23334555555555555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9e-17 Score=143.60 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=119.9
Q ss_pred cccccccceeecCCCCCc--cCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCccc
Q 044264 152 IEKLVHLRYLNLSRLKIE--KLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSL 229 (439)
Q Consensus 152 ~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 229 (439)
.....+|++|++++|.++ .++..+..+++|++|++++|......+..++.+++|++|++++|..++.. +
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~--~------- 112 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--A------- 112 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH--H-------
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc--c-------
Confidence 345568888998888754 35556778888888888888744455566777888888888876543211 0
Q ss_pred ccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhC-CCCCCccEEEEeeccC--Cc-cCCchhhc
Q 044264 230 RRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEAL-QPPPNLKHLGIHQYRG--NN-VHPHWMMS 305 (439)
Q Consensus 230 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~--~~-~l~~~~~~ 305 (439)
.......+++|++|+++++... ....+...+ ..+++|+.|+++++.. .. .+......
T Consensus 113 -------------l~~l~~~~~~L~~L~ls~c~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~ 173 (284)
T d2astb2 113 -------------LQTLLSSCSRLDELNLSWCFDF------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173 (284)
T ss_dssp -------------HHHHHHHCTTCCEEECCCCTTC------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred -------------cchhhHHHHhcccccccccccc------ccccchhhhcccccccchhhhcccccccccccccccccc
Confidence 0111234556666666654211 112222222 3357899999987532 21 11233457
Q ss_pred ccCccEEeecCCCCCCc--CCCCCCcCCcCeeeeccccCeeEeCCccccccCCCCCCCCCCcCCCCcceeeccCC
Q 044264 306 LTDLRILTLSHCINCEH--LPPLGKLPSLEQLYFYSMGSVKRVGDEFLGVESDHGRASSSVVAFPKLKTIQFWDM 378 (439)
Q Consensus 306 ~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (439)
+++|++|++++|...++ +..+..+++|++|++++|..++..... .+..+|+|+.|++++|
T Consensus 174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-------------~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-------------ELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-------------GGGGCTTCCEEECTTS
T ss_pred cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-------------HHhcCCCCCEEeeeCC
Confidence 89999999999875543 334778999999999998766432111 1556899999999987
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=4.7e-15 Score=126.07 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=91.5
Q ss_pred CCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccc
Q 044264 125 LTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLIN 204 (439)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~ 204 (439)
+..|+.|++++ +. +..++ .+..+++|++|++++|.++.+++ ++.+++|++|++++|. +..+| .+..+++
T Consensus 45 L~~L~~L~l~~------~~-i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~ 113 (210)
T d1h6ta2 45 LNSIDQIIANN------SD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKK 113 (210)
T ss_dssp HHTCCEEECTT------SC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTT
T ss_pred hcCccEEECcC------CC-CCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-ccccc-ccccccc
Confidence 44567777776 54 33343 35667777777777777776663 5667777777777776 55555 3666777
Q ss_pred cceeeccCccccccCCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCC
Q 044264 205 LMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPN 284 (439)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (439)
|+.|++.+|.. ..+ ..+..+++++.+++..+...+ ...+.. +++
T Consensus 114 L~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~--------------------------------l~~ 157 (210)
T d1h6ta2 114 LKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITD--ITVLSR--------------------------------LTK 157 (210)
T ss_dssp CCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCC--CGGGGG--------------------------------CTT
T ss_pred ccccccccccc-ccc-ccccccccccccccccccccc--cccccc--------------------------------ccc
Confidence 77777776653 222 234455555555554443321 111222 344
Q ss_pred ccEEEEeeccCCccCCchhhcccCccEEeecCCCCCCcCCCCCCcCCcCeeeec
Q 044264 285 LKHLGIHQYRGNNVHPHWMMSLTDLRILTLSHCINCEHLPPLGKLPSLEQLYFY 338 (439)
Q Consensus 285 L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 338 (439)
|+.+++++|..... ..+..+++|+.|++++|.. +.++.+..+++|+.|+++
T Consensus 158 L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 158 LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELF 208 (210)
T ss_dssp CSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEE
T ss_pred cccccccccccccc--ccccCCCCCCEEECCCCCC-CCChhhcCCCCCCEEEcc
Confidence 55555555544442 2245556666666666543 234455556666666654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=1.7e-14 Score=121.42 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=69.6
Q ss_pred cCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcc
Q 044264 124 ELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLI 203 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~ 203 (439)
.+.+++.|++++ +. +..+. .+..+++|++|++++|.++.+++ ++++++|++|++++|. ...++. +.+++
T Consensus 38 ~l~~l~~L~l~~------~~-i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l~ 106 (199)
T d2omxa2 38 DLDQVTTLQADR------LG-IKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLT 106 (199)
T ss_dssp HHTTCCEEECTT------SC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCT
T ss_pred HhcCCCEEECCC------CC-CCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccc-cccccc-ccccc
Confidence 456777777777 55 44443 36777788888888887777764 7777888888887776 555553 67778
Q ss_pred ccceeeccCccccccCCcccccCcccccccceeecc
Q 044264 204 NLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVGR 239 (439)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 239 (439)
+|+.|+++++.... . ..+..+++|+.|++++|..
T Consensus 107 ~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l 140 (199)
T d2omxa2 107 NLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTI 140 (199)
T ss_dssp TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCC
T ss_pred cccccccccccccc-c-cccchhhhhHHhhhhhhhh
Confidence 88888887766432 2 2456677777777665543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.6e-15 Score=133.94 Aligned_cols=183 Identities=19% Similarity=0.227 Sum_probs=120.1
Q ss_pred cCCceeEEeCCccccccccccc-cccccccccccccceeecCCCCCc-cCChhHhhccCCcEeecCCCCcccc--cchhh
Q 044264 124 ELTCLRALDFAMFQMWSWNGFI-KEIPKNIEKLVHLRYLNLSRLKIE-KLPETLCELYNLQLLNVESCQDLKE--LPQGF 199 (439)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~i 199 (439)
....|++|++++ +.+. ..+...+..+++|++|++++|.++ ..+..+..+++|++|++++|..++. +....
T Consensus 44 ~~~~L~~LdLs~------~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~ 117 (284)
T d2astb2 44 SPFRVQHMDLSN------SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117 (284)
T ss_dssp CCBCCCEEECTT------CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred cCCCCCEEECCC------CccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhh
Confidence 456899999998 5432 224555788999999999999865 5567788999999999999875543 33445
Q ss_pred hhccccceeeccCcccccc--CCcccccCcccccccceeeccccccccccccccCcceeeecccCCcchhccCChHHHHH
Q 044264 200 GKLINLMYLLNRGTESLRY--LPAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLE 277 (439)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 277 (439)
..+++|++|++++|..... ++..+... +++|+.|.++++.... ....+..
T Consensus 118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~-----------------------~~~L~~L~l~~~~~~i-----~~~~l~~ 169 (284)
T d2astb2 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHV-----------------------SETITQLNLSGYRKNL-----QKSDLST 169 (284)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHS-----------------------CTTCCEEECCSCGGGS-----CHHHHHH
T ss_pred HHHHhccccccccccccccccchhhhccc-----------------------ccccchhhhccccccc-----ccccccc
Confidence 6789999999998864332 11111111 2344444444321000 1233344
Q ss_pred hCCCCCCccEEEEeeccCCc-cCCchhhcccCccEEeecCCCCCCcC--CCCCCcCCcCeeeeccc
Q 044264 278 ALQPPPNLKHLGIHQYRGNN-VHPHWMMSLTDLRILTLSHCINCEHL--PPLGKLPSLEQLYFYSM 340 (439)
Q Consensus 278 ~l~~~~~L~~L~l~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~ 340 (439)
....+++|++|++++|...+ ..+..+..+++|++|++++|...++. ..++++|+|+.|++++|
T Consensus 170 l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 170 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 44557788888887765433 22455667888888888887654322 23677888888888877
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2e-14 Score=125.09 Aligned_cols=191 Identities=14% Similarity=0.114 Sum_probs=97.0
Q ss_pred ccccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcccccc-CCc
Q 044264 145 IKEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRY-LPA 221 (439)
Q Consensus 145 ~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~-~~~ 221 (439)
...+|..+. +++++|++++|.++.+|. .+.++++|++|++++|.....++. .+..+++++++.+..+..... .+.
T Consensus 20 l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~ 97 (242)
T d1xwdc1 20 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 97 (242)
T ss_dssp CSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred CCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence 345554332 456677777776666664 356667777777766654333332 355666666666554433332 334
Q ss_pred ccccCcccccccceeeccccccc-cccccccCcceeeecccCCcchhccCChHHHHHhCCC-CCCccEEEEeeccCCccC
Q 044264 222 GIERLTSLRRVEKFVVGRGVARS-SELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQP-PPNLKHLGIHQYRGNNVH 299 (439)
Q Consensus 222 ~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~l 299 (439)
.+..+++|+++++..+....... ..+..++.+..+...++.... .-...+.. ...++.|++.++.....
T Consensus 98 ~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~--------i~~~~~~~~~~~l~~L~l~~n~l~~i- 168 (242)
T d1xwdc1 98 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--------IERNSFVGLSFESVILWLNKNGIQEI- 168 (242)
T ss_dssp SEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE--------ECTTSSTTSBSSCEEEECCSSCCCEE-
T ss_pred cccccccccccccchhhhccccccccccccccccccccccccccc--------ccccccccccccceeeeccccccccc-
Confidence 45666666666666654432111 112222222222222221000 00111222 23666777777666654
Q ss_pred CchhhcccCccEEeecCCCCCCcCCC--CCCcCCcCeeeeccccCeeEeC
Q 044264 300 PHWMMSLTDLRILTLSHCINCEHLPP--LGKLPSLEQLYFYSMGSVKRVG 347 (439)
Q Consensus 300 ~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~ 347 (439)
+......++++.+....+...+.++. +.++++|+.|++++|. ++.++
T Consensus 169 ~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~ 217 (242)
T d1xwdc1 169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP 217 (242)
T ss_dssp CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCC
T ss_pred ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccC
Confidence 44444555655555444333444543 6677777777777776 44444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.4e-14 Score=121.11 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=72.6
Q ss_pred ceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCccccccCC-cccccCccccccccee
Q 044264 159 RYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESLRYLP-AGIERLTSLRRVEKFV 236 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 236 (439)
++++.++..++.+|+.+. .++++|++++|. +..+|. .+.++++|++|++++|.....++ ..+..+++++++.+..
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 577788888889987653 589999999998 777776 57899999999999988655544 3467788888887655
Q ss_pred e-ccccccccccccccCcceeeeccc
Q 044264 237 V-GRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 237 ~-~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
+ ......+..+.++++|+.+++..+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNT 113 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESC
T ss_pred cccccccccccccccccccccccchh
Confidence 3 333344445666666666666655
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=7.5e-13 Score=101.62 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=52.9
Q ss_pred eEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhcccccee
Q 044264 129 RALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYL 208 (439)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L 208 (439)
|+|++++ +. +..++ .+..+++|++|++++|.++.+|+.++.+++|+.|++++|. +..+|. ++.+++|++|
T Consensus 1 R~L~Ls~------n~-l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~L 70 (124)
T d1dcea3 1 RVLHLAH------KD-LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQEL 70 (124)
T ss_dssp SEEECTT------SC-CSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEE
T ss_pred CEEEcCC------CC-CCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCc-cccccccCeE
Confidence 4555555 44 33343 2555666666666666666666555666666666666655 444543 5566666666
Q ss_pred eccCccccccCC--cccccCcccccccceeec
Q 044264 209 LNRGTESLRYLP--AGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 209 ~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 238 (439)
++++|.. ..+| ..+..+++|+.|++.+|.
T Consensus 71 ~l~~N~i-~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 71 LLCNNRL-QQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp ECCSSCC-CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ECCCCcc-CCCCCchhhcCCCCCCEEECCCCc
Confidence 6665553 2222 234445555555554443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=8.3e-13 Score=106.57 Aligned_cols=106 Identities=25% Similarity=0.258 Sum_probs=60.2
Q ss_pred CCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCCh
Q 044264 94 CSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPE 173 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~ 173 (439)
.++..+++|++++|. +. .++..+..+++|+.|++++ |. +..++ .+..+++|++|++++|.++.+|+
T Consensus 15 ~n~~~lr~L~L~~n~-----I~-~i~~~~~~l~~L~~L~Ls~------N~-i~~l~-~~~~l~~L~~L~ls~N~i~~l~~ 80 (162)
T d1a9na_ 15 TNAVRDRELDLRGYK-----IP-VIENLGATLDQFDAIDFSD------NE-IRKLD-GFPLLRRLKTLLVNNNRICRIGE 80 (162)
T ss_dssp ECTTSCEEEECTTSC-----CC-SCCCGGGGTTCCSEEECCS------SC-CCEEC-CCCCCSSCCEEECCSSCCCEECS
T ss_pred cCcCcCcEEECCCCC-----CC-ccCccccccccCCEEECCC------CC-CCccC-CcccCcchhhhhcccccccCCCc
Confidence 345556666666665 22 2234445566666666666 54 33343 35566666666666666666654
Q ss_pred h-HhhccCCcEeecCCCCcccccch--hhhhccccceeeccCcc
Q 044264 174 T-LCELYNLQLLNVESCQDLKELPQ--GFGKLINLMYLLNRGTE 214 (439)
Q Consensus 174 ~-i~~l~~L~~L~l~~~~~~~~l~~--~i~~l~~L~~L~l~~~~ 214 (439)
. +..+++|++|++++|. +..++. .+..+++|++|++.+|+
T Consensus 81 ~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 81 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred cccccccccccceecccc-ccccccccccccccccchhhcCCCc
Confidence 3 3456666666666665 444432 35556666666666665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6.3e-13 Score=107.32 Aligned_cols=128 Identities=18% Similarity=0.083 Sum_probs=96.2
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchh-hh
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQG-FG 200 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~-i~ 200 (439)
+.++..+|.|+|++ +. +..++..+..+++|++|++++|.++.++ .++.+++|++|++++|. +..++.. +.
T Consensus 14 ~~n~~~lr~L~L~~------n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~ 84 (162)
T d1a9na_ 14 YTNAVRDRELDLRG------YK-IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQ 84 (162)
T ss_dssp EECTTSCEEEECTT------SC-CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred ccCcCcCcEEECCC------CC-CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccc
Confidence 55777899999999 77 6667766678899999999999998885 47889999999999998 6666654 56
Q ss_pred hccccceeeccCccccccCC--cccccCcccccccceeecccccc---ccccccccCcceeeec
Q 044264 201 KLINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVGRGVAR---SSELENKKNLIDLLLY 259 (439)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~ 259 (439)
.+++|++|++++|.. ..++ ..+..+++|++|++.+|...... ...+..+++|+.|+..
T Consensus 85 ~l~~L~~L~L~~N~i-~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 85 ALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp HCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred cccccccceeccccc-cccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 799999999999874 3333 34677888888888877653321 2346667777777643
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=8.5e-13 Score=101.30 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=81.9
Q ss_pred ceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccCCcccccCcccccccceeec
Q 044264 159 RYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYLPAGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (439)
|+|++++|.++.++. +..+++|++|++++|. ++.+|..++.+++|++|++++|.. ..+| .++.+++|+.|++.+|.
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCCc
Confidence 689999999998874 8999999999999998 788998899999999999999874 5565 58888999999988887
Q ss_pred ccccc-ccccccccCcceeeecccC
Q 044264 239 RGVAR-SSELENKKNLIDLLLYFGH 262 (439)
Q Consensus 239 ~~~~~-~~~l~~l~~L~~L~l~~~~ 262 (439)
..... ...+..+++|+.|++++|.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCc
Confidence 65432 3456677777777777663
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=7.3e-14 Score=133.17 Aligned_cols=113 Identities=17% Similarity=0.089 Sum_probs=79.4
Q ss_pred CCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccC-----
Q 044264 97 KRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKL----- 171 (439)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l----- 171 (439)
.+|+.|+++++.. ....+...+..++++++|+|++|++. ... ...++..+..+++|++|+|++|.++..
T Consensus 2 ~~l~~ld~~~~~i----~~~~~~~l~~~l~~l~~L~L~~~~i~-~~~-~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l 75 (460)
T d1z7xw1 2 LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLT-EAR-CKDISSALRVNPALAELNLRSNELGDVGVHCV 75 (460)
T ss_dssp EEEEEEEEESCCC----CHHHHHHHHHHHTTCSEEEEESSCCC-HHH-HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred CCCCEEEeeCCcC----ChHHHHHHHHhCCCCCEEEeCCCCCC-HHH-HHHHHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence 4689999999983 23334555777899999999994321 011 234556678899999999999987632
Q ss_pred ChhHh-hccCCcEeecCCCCcccc----cchhhhhccccceeeccCccc
Q 044264 172 PETLC-ELYNLQLLNVESCQDLKE----LPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 172 p~~i~-~l~~L~~L~l~~~~~~~~----l~~~i~~l~~L~~L~l~~~~~ 215 (439)
...+. ...+|++|++++|..... ++..+..+++|++|++++|..
T Consensus 76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence 22222 235799999999983222 445677889999999998763
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.25 E-value=4.5e-12 Score=105.62 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhh-hhhHhhhcCCceeEEeCCcccccccccccccccccccccc
Q 044264 78 HSMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTE-VLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLV 156 (439)
Q Consensus 78 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 156 (439)
.+...+.....+|..+. ++++.|++++|. +.. ..+..|..+++|+.|++++ +.+....+..+..++
T Consensus 12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~-----i~~~~~~~~f~~l~~L~~L~L~~------N~i~~~~~~~~~~~~ 78 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKR------NQLTGIEPNAFEGAS 78 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCS------SCCCCBCTTTTTTCT
T ss_pred EEEEeCCCcCccCCCCC--CCCCEEEeCCCC-----CcccccccccCCCceEeeeeccc------ccccccccccccccc
Confidence 34455556677787654 688999999987 443 3455678899999999998 775556667788899
Q ss_pred ccceeecCCCCCccCCh-hHhhccCCcEeecCCCCcccccch-hhhhccccceeeccCcccc
Q 044264 157 HLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQDLKELPQ-GFGKLINLMYLLNRGTESL 216 (439)
Q Consensus 157 ~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~-~i~~l~~L~~L~l~~~~~~ 216 (439)
+|++|++++|.++.+|+ .+.++++|++|+|++|. +..+|. .+..+++|++|++++|+..
T Consensus 79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccceeeeccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence 99999999999988865 57889999999999998 666654 5788999999999988753
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=5.3e-13 Score=111.64 Aligned_cols=110 Identities=22% Similarity=0.249 Sum_probs=65.2
Q ss_pred hhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccch
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQ 197 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~ 197 (439)
++..+..+++|+.|++++ +. +..++ .+..+++|++|++++|.++.+|.....+++|++|++++|. +..++
T Consensus 40 l~~sl~~L~~L~~L~Ls~------n~-I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~- 109 (198)
T d1m9la_ 40 MDATLSTLKACKHLALST------NN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS- 109 (198)
T ss_dssp CHHHHHHTTTCCEEECSE------EE-ESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH-
T ss_pred hhhHHhcccccceeECcc------cC-CCCcc-cccCCccccChhhccccccccccccccccccccccccccc-ccccc-
Confidence 334466666777777766 55 44443 3666667777777777666666555555667777776665 44443
Q ss_pred hhhhccccceeeccCccccccCC--cccccCcccccccceeec
Q 044264 198 GFGKLINLMYLLNRGTESLRYLP--AGIERLTSLRRVEKFVVG 238 (439)
Q Consensus 198 ~i~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 238 (439)
.+..+++|++|++++|.. ..++ ..+..+++|+.|++.+|.
T Consensus 110 ~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 110 GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccccccccccccchh-ccccccccccCCCccceeecCCCc
Confidence 366666777777766653 2222 234555666666655544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=3.7e-11 Score=99.98 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=61.6
Q ss_pred cccccccccccccccccceeecCCCCCcc-C-ChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccccccC
Q 044264 142 NGFIKEIPKNIEKLVHLRYLNLSRLKIEK-L-PETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTESLRYL 219 (439)
Q Consensus 142 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-l-p~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~~~~~ 219 (439)
++ ...+|..+. +++++|+|++|.++. + +..+.++++|+.|++++|......+..+..+++|++|++++|....-.
T Consensus 18 ~~-L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~ 94 (192)
T d1w8aa_ 18 RG-LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94 (192)
T ss_dssp SC-CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC
T ss_pred CC-cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC
Confidence 44 344554432 456666666666543 2 234556666666666666533333445556666666666666533222
Q ss_pred CcccccCcccccccceeeccccccccccccccCcceeeeccc
Q 044264 220 PAGIERLTSLRRVEKFVVGRGVARSSELENKKNLIDLLLYFG 261 (439)
Q Consensus 220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 261 (439)
|..+..+++|++|++.+|......+..+..+++|++|++++|
T Consensus 95 ~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred HHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence 334555666666666555554444444555555555555544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.15 E-value=3.4e-12 Score=106.63 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=33.3
Q ss_pred cccccccccccceeecCCCCCccCChhHhhccCCcEeecCCCCcccccchhhhhccccceeeccCcc
Q 044264 148 IPKNIEKLVHLRYLNLSRLKIEKLPETLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 148 ~~~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~ 214 (439)
++..+..+++|++|++++|.++.++ .+..+++|++|++++|. +..+|.....+++|++|++++|.
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~ 104 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE
T ss_pred hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-ccccccccccccccccccccccc
Confidence 3444555555555555555555554 35555555555555554 44444433444455555555543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.10 E-value=7.2e-12 Score=114.64 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=20.4
Q ss_pred hCCCCCCccEEEEeeccCCcc----CCchhhcccCccEEeecCCCC
Q 044264 278 ALQPPPNLKHLGIHQYRGNNV----HPHWMMSLTDLRILTLSHCIN 319 (439)
Q Consensus 278 ~l~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~ 319 (439)
.+..+++|+.|++++|.+... +...+..+++|++|++++|.+
T Consensus 210 ~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i 255 (344)
T d2ca6a1 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255 (344)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence 344455566666555543220 112334555566666665544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.09 E-value=7.8e-12 Score=114.44 Aligned_cols=246 Identities=14% Similarity=0.044 Sum_probs=154.1
Q ss_pred CcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccc-------ccccccccccccccce
Q 044264 88 PFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGF-------IKEIPKNIEKLVHLRY 160 (439)
Q Consensus 88 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~~~~l~~L~~ 160 (439)
.+...+.+...++.|++++|...... ...+...+...+.|+.|+++++.. +.. ...+...+..+++|+.
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~-~~~l~~~l~~~~~L~~l~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~L~~ 97 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEA-ARWLSENIASKKDLEIAEFSDIFT---GRVKDEIPEALRLLLQALLKCPKLHT 97 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHH-HHHHHHTTTTCTTCCEEECCSCCT---TSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHH-HHHHHHHHHhCCCCCEEECCCCcc---cccccccchHHHHHHHHHhhCCCccc
Confidence 33445566788889999887621111 123444566778899999887321 110 1112334566788999
Q ss_pred eecCCCCCcc-----CChhHhhccCCcEeecCCCCcccc----cchh---------hhhccccceeeccCcccccc----
Q 044264 161 LNLSRLKIEK-----LPETLCELYNLQLLNVESCQDLKE----LPQG---------FGKLINLMYLLNRGTESLRY---- 218 (439)
Q Consensus 161 L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~----l~~~---------i~~l~~L~~L~l~~~~~~~~---- 218 (439)
|++++|.++. +...+..+++|++|++++|..... +... ....+.|+.+.++++.....
T Consensus 98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~ 177 (344)
T d2ca6a1 98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177 (344)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence 9999888653 445566788999999988863211 1011 13456788888887754221
Q ss_pred CCcccccCcccccccceeeccccc-----cccccccccCcceeeecccCCcchhccCChHHHHHhCCCCCCccEEEEeec
Q 044264 219 LPAGIERLTSLRRVEKFVVGRGVA-----RSSELENKKNLIDLLLYFGHGNEERKRKKDEEVLEALQPPPNLKHLGIHQY 293 (439)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 293 (439)
+...+..+++|+.|++..|..... ....+..+++|+.|++++|.... .....+...+..+++|++|++++|
T Consensus 178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~----~g~~~L~~~l~~~~~L~~L~Ls~n 253 (344)
T d2ca6a1 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALKSWPNLRELGLNDC 253 (344)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccc----cccccccccccccccchhhhhhcC
Confidence 223356678899999888776542 34457788899999998874211 022445677888999999999998
Q ss_pred cCCccCCch----hh--cccCccEEeecCCCCCCc----CCC-C-CCcCCcCeeeecccc
Q 044264 294 RGNNVHPHW----MM--SLTDLRILTLSHCINCEH----LPP-L-GKLPSLEQLYFYSMG 341 (439)
Q Consensus 294 ~~~~~l~~~----~~--~~~~L~~L~l~~~~~~~~----~~~-~-~~l~~L~~L~l~~~~ 341 (439)
.+....... +. ..+.|++|++++|..... +.. + .++++|+.|++++|.
T Consensus 254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 876521111 22 246788888888865432 111 2 245678888887776
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6e-13 Score=126.69 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=62.6
Q ss_pred ceeEEEEEcCCCCCc--CcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccc----ccc
Q 044264 75 NVRHSMVKLGKGAPF--PISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI----KEI 148 (439)
Q Consensus 75 ~l~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~ 148 (439)
+++.+.+.+...... ...+..++++++|++.+|.... .-...+...+..+++|+.|+|++ |.+. ..+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~-~~~~~l~~~L~~~~~L~~LdLs~------N~i~~~~~~~l 75 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-ARCKDISSALRVNPALAELNLRS------NELGDVGVHCV 75 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH-HHHHHHHHHHHTCTTCCEEECTT------CCCHHHHHHHH
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCH-HHHHHHHHHHhcCCCCCEEECcC------CcCChHHHHHH
Confidence 456666666665321 2233456777777787776210 01123455567777788888877 4421 112
Q ss_pred ccccc-cccccceeecCCCCCcc-----CChhHhhccCCcEeecCCCC
Q 044264 149 PKNIE-KLVHLRYLNLSRLKIEK-----LPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 149 ~~~~~-~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~ 190 (439)
...+. ...+|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 22222 23467788888777653 34456667778888877765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.1e-08 Score=81.15 Aligned_cols=102 Identities=20% Similarity=0.120 Sum_probs=58.9
Q ss_pred EEEEcCCCCCcCcccCCCCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCcccccccccccccccccccccccc
Q 044264 79 SMVKLGKGAPFPISFCSVKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHL 158 (439)
Q Consensus 79 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 158 (439)
+.........+|..+..+++++.|++.++. .+....+..|..+++|+.|++++ |.+....+..|..+++|
T Consensus 13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~----~l~~i~~~~f~~l~~L~~L~Ls~------N~l~~i~~~~f~~l~~L 82 (156)
T d2ifga3 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTPRL 82 (156)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCSCC
T ss_pred EEecCCCCccCcccccCccccCeeecCCCc----cccccCchhhccccccCcceeec------cccCCcccccccccccc
Confidence 334444445556666666666777665442 13334444566666677777766 55222224446666667
Q ss_pred ceeecCCCCCccCChhHhhccCCcEeecCCCC
Q 044264 159 RYLNLSRLKIEKLPETLCELYNLQLLNVESCQ 190 (439)
Q Consensus 159 ~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 190 (439)
++|+|++|.++.+|..+.....|+.|++++|.
T Consensus 83 ~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 83 SRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeccCCCCcccChhhhccccccccccCCCc
Confidence 77777766666666554444556666666665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=9e-09 Score=81.78 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=71.4
Q ss_pred CCCeeEEEecCCCCChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccc-cccccccccceeecCCCCCccCC-h
Q 044264 96 VKRLRSLLIDDNGDDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIP-KNIEKLVHLRYLNLSRLKIEKLP-E 173 (439)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~lp-~ 173 (439)
+.....++..++. ....|..+..+++|+.|++++ +..+..++ ..|..+++|+.|++++|.++.++ .
T Consensus 7 c~~~~~l~c~~~~------~~~~p~~l~~l~~l~~L~l~~------n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 74 (156)
T d2ifga3 7 PHGSSGLRCTRDG------ALDSLHHLPGAENLTELYIEN------QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (156)
T ss_dssp CSSSSCEECCSSC------CCTTTTTSCSCSCCSEEECCS------CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred cCCCCeEEecCCC------CccCcccccCccccCeeecCC------CccccccCchhhccccccCcceeeccccCCcccc
Confidence 3344456665554 223455566777888888876 44344443 45777888888888888888774 4
Q ss_pred hHhhccCCcEeecCCCCcccccchhhhhccccceeeccCccc
Q 044264 174 TLCELYNLQLLNVESCQDLKELPQGFGKLINLMYLLNRGTES 215 (439)
Q Consensus 174 ~i~~l~~L~~L~l~~~~~~~~l~~~i~~l~~L~~L~l~~~~~ 215 (439)
.+..+++|++|++++|. +..+|..+-...+|+.|++++|+.
T Consensus 75 ~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 75 AFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp GGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cccccccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence 57778888888888887 667766555555678888877764
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=9.4e-07 Score=70.26 Aligned_cols=38 Identities=29% Similarity=0.215 Sum_probs=17.6
Q ss_pred hhccCCcEeecCCCCccccc---chhhhhccccceeeccCcc
Q 044264 176 CELYNLQLLNVESCQDLKEL---PQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~l---~~~i~~l~~L~~L~l~~~~ 214 (439)
..+++|++|++++|. ++.+ +..+..+++|+.|++++|.
T Consensus 62 ~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~ 102 (162)
T d1koha1 62 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE 102 (162)
T ss_dssp HHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred HhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCc
Confidence 345555555555554 3322 2223445555555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=3.2e-06 Score=67.01 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=33.8
Q ss_pred hhHhhhcCCceeEEeCCccccccccccc--cccccccccccccceeecCCCCCccCCh-hHhhccCCcEeecCCCC
Q 044264 118 LPQLFDELTCLRALDFAMFQMWSWNGFI--KEIPKNIEKLVHLRYLNLSRLKIEKLPE-TLCELYNLQLLNVESCQ 190 (439)
Q Consensus 118 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 190 (439)
++..+..+++|++|+|++ |.+. ..++..+..+++|++|++++|.++.+++ ......+|+.|++++|.
T Consensus 57 l~~~~~~~~~L~~L~Ls~------N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 57 LRIIEENIPELLSLNLSN------NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHHHHHHCTTCCCCCCCS------SCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred hHHHHHhCCCCCEeeCCC------ccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence 333444566666666666 4421 1122334455666666666666665543 11223345556666555
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.72 E-value=7.7e-06 Score=65.11 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=41.6
Q ss_pred hhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCCCCcccc--
Q 044264 122 FDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVESCQDLKE-- 194 (439)
Q Consensus 122 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~~-- 194 (439)
..+.+.|+.|+|++++.++... ...+...+...+.|++|+|++|.++ .+...+...+.|++|++++|.....
T Consensus 11 ~~n~~~L~~L~L~~~~~i~~~~-~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~ 89 (167)
T d1pgva_ 11 REDDTDLKEVNINNMKRVSKER-IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 89 (167)
T ss_dssp HTTCSSCCEEECTTCCSSCHHH-HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhCCCCCcEEEeCCCCCCCHHH-HHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence 3445566666665422111111 1122333444555666666666543 2233444556666666666652211
Q ss_pred --cchhhhhccccceeeccCc
Q 044264 195 --LPQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 195 --l~~~i~~l~~L~~L~l~~~ 213 (439)
+...+...++|++|++.++
T Consensus 90 ~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 90 ARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhCCcCCEEECCCC
Confidence 1222334445555555544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.58 E-value=7e-05 Score=59.31 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=74.0
Q ss_pred CCCCCeeEEEecCCC-CChhhHhhhhhHhhhcCCceeEEeCCccccccccccc----cccccccccccccceeecCCCCC
Q 044264 94 CSVKRLRSLLIDDNG-DDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFI----KEIPKNIEKLVHLRYLNLSRLKI 168 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~ 168 (439)
.+.+.|++|+++++. .. ......+...+...+.|+.|++++ +.+. ..+...+...+.|+.|++++|.+
T Consensus 12 ~n~~~L~~L~L~~~~~i~-~~~~~~l~~~L~~n~~L~~L~Ls~------n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i 84 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVS-KERIRSLIEAACNSKHIEKFSLAN------TAISDSEARGLIELIETSPSLRVLNVESNFL 84 (167)
T ss_dssp TTCSSCCEEECTTCCSSC-HHHHHHHHHHHTTCSCCCEEECTT------SCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hCCCCCcEEEeCCCCCCC-HHHHHHHHHHHhhCCccceeeccc------cccchhHHHHHhhhhhhcccccceeeehhhc
Confidence 346789999998643 11 111122445577788899999998 5422 23444556678899999999987
Q ss_pred c-----cCChhHhhccCCcEeecCCCCccc-------ccchhhhhccccceeeccCc
Q 044264 169 E-----KLPETLCELYNLQLLNVESCQDLK-------ELPQGFGKLINLMYLLNRGT 213 (439)
Q Consensus 169 ~-----~lp~~i~~l~~L~~L~l~~~~~~~-------~l~~~i~~l~~L~~L~l~~~ 213 (439)
+ .+...+...+.|++|+++++.... .+...+...++|+.|+++.+
T Consensus 85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 6 344566777889999998875211 13344556677888877654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.35 E-value=3.1e-05 Score=61.45 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=41.0
Q ss_pred HhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc-----cCChhHhhccCCcEeecCC
Q 044264 114 LTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE-----KLPETLCELYNLQLLNVES 188 (439)
Q Consensus 114 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~ 188 (439)
+...+.....+.+.|+.|+++++..++... ...+...+...++|+.|++++|.++ .+...+...+.++.+++++
T Consensus 5 i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~-~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~ 83 (166)
T d1io0a_ 5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 83 (166)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCCcEEEcCCCCCCCHHH-HHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcc
Confidence 344445545566777777776522111111 2223344455666777777777654 2334455566677777766
Q ss_pred CC
Q 044264 189 CQ 190 (439)
Q Consensus 189 ~~ 190 (439)
|.
T Consensus 84 ~~ 85 (166)
T d1io0a_ 84 NF 85 (166)
T ss_dssp SC
T ss_pred cc
Confidence 65
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.02 E-value=0.00045 Score=54.39 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=71.8
Q ss_pred CCCCCeeEEEecCCC-CChhhHhhhhhHhhhcCCceeEEeCCccccccccccccccccccccccccceeecCCCCCc---
Q 044264 94 CSVKRLRSLLIDDNG-DDEFWLTEVLPQLFDELTCLRALDFAMFQMWSWNGFIKEIPKNIEKLVHLRYLNLSRLKIE--- 169 (439)
Q Consensus 94 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~--- 169 (439)
.+.+.|+.|++.++. .. ......+...+...++|+.|++++|.+.. .....+...+...+.++.++++++.++
T Consensus 14 ~~~~~L~~L~L~~~~~i~-~~~~~~l~~al~~n~~L~~L~Ls~n~l~~--~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g 90 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIP-VPTLKACAEALKTNTYVKKFSIVGTRSND--PVAFALAEMLKVNNTLKSLNVESNFISGSG 90 (166)
T ss_dssp TTCTTCCEEECTTCTTCC-HHHHHHHHHHHTTCCSCCEEECTTSCCCH--HHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred hcCCCCcEEEcCCCCCCC-HHHHHHHHHHHhcCCccCeeeccCCcccH--HHHHHHHHHHhhcccchhhhhccccccchh
Confidence 356788888888743 11 11122244556678889999999833210 002234445666788999999988864
Q ss_pred --cCChhHhhccCCcEeecCCCCc-cc-----ccchhhhhccccceeeccCcc
Q 044264 170 --KLPETLCELYNLQLLNVESCQD-LK-----ELPQGFGKLINLMYLLNRGTE 214 (439)
Q Consensus 170 --~lp~~i~~l~~L~~L~l~~~~~-~~-----~l~~~i~~l~~L~~L~l~~~~ 214 (439)
.+...+...+.|+.++++.+.. +. .+...+...++|+.|++..+.
T Consensus 91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 3445667778888766654321 21 244456677788888876553
|