Citrus Sinensis ID: 044271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MCIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASSVNP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccccccccccEEEcEEccccccccccccccEEEEcccccEEEEccccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccEEEEcccccccccccEEEEccccccccEEEEEccccccccccccEEEEEEEEccccccccccccEEccccccEEEEccccccHHHHccccccccccccccccccccccccccccccHHHHEEEEEEEEEEEEEcccccEEcccccccccccccccccccccccccccccccccHHHHccccEEEEcccccccccccccccEEccccccccEEEcccccccccccccHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccccccccccEEccEEEccccccccccccEEEEEcccccEEEEcccccEEEEEEEEEEEEEEEEEccccccHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccHHHcccccccEEEEEEEccccccccccccccccccccEEEEEcccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccEEEEEcccccccccccEEEEEEccccccccEEEcccccccccHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MCIIQVFFFLFFLFSfihsescqvhfcadnipvrfpfqlhgkqpencsypgfnltctsqgitvlklpnsgeffvRNINYITQqiylydpedclpkrlqsfnlsgspfvatfvshnytflscpaqvIKSRFTtidclsnsttsvLATSSVSFVNSMISSCQIistltvpisrpvhydegfiidlnsdlpltwslpdcidceargqicgfksrnsqeigcfnnskpggsngglQVFRILALSIAIPALICASAIGicacctdrsrlgsmqlnstptavvpqppimtvgldesTIESFQKLVLgeskrlpgpnssacpiclseflsqetircipeckhcfhaECIDEWLrlndkcpvcrnsatpvhassvnp
Flexible Loop (DISEMBL)
MCIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSRLGSMQLnstptavvpqppIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRnsatpvhassvnp
Low Complexity Region (SEG)
MCIIQVffflfflfsfIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLsnsttsvlatssvsfvnsmissCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRilalsiaipalicasaigicaccTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASSVNP
Disordered region (IsUnstruct)
*CIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNN****GSNGGLQVFRILALSIAIPALICASAIGICACCTDRSRLG**********VV***PIMTVGLDESTIESFQKLVL************ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR*************
Disordered Region (DISOPRED)
*CIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSRLGSMQLNSTPT**************ESTIESFQKLVLGESKR**GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS***********
Disordered Region (DISEMBL)
MCIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT*********
Disordered Region (DISPRO)
MCIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSR*********************VGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCIIQVFFFLFFLFSFIHSESCQVHFCADNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASSVNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
P0CH01	372	Putative RING-H2 finger p	yes	no	0.929	0.922	0.507	1e-88
Q9SKK8	377	RING-H2 finger protein AT	no	no	0.897	0.877	0.459	3e-77
P0CH02	362	Putative RING-H2 finger p	no	no	0.888	0.906	0.444	2e-71
P0CH03	366	Putative RING-H2 finger p	no	no	0.829	0.836	0.434	2e-61
Q9C7E9	299	RING-H2 finger protein AT	no	no	0.780	0.963	0.430	2e-58
Q9FL42	159	Putative RING-H2 finger p	no	no	0.336	0.779	0.428	3e-23
Q8RX29	217	RING-H2 finger protein AT	no	no	0.211	0.359	0.463	1e-15
Q9M313	212	RING-H2 finger protein AT	no	no	0.230	0.400	0.404	6e-14
Q9SK92	381	E3 ubiquitin-protein liga	no	no	0.224	0.217	0.464	1e-13
Q9M0R5	345	Putative RING-H2 finger p	no	no	0.295	0.315	0.380	3e-13

>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/355 (50%), Positives = 231/355 (65%), Gaps = 12/355 (3%)

Query: 18  HSESCQVHFCA-DNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRN 76
           H + C    C  D++ VRFPF L  KQPE C + GFNL CT+   T LKLPNSG F VR 
Sbjct: 22  HPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPKTALKLPNSGTFLVRE 81

Query: 77  INYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIK-SRFTTIDC 135
           I+Y++QQI LYDPE+CL ++L +F++S SPF A ++  +YTFLSCP +V K SRF +I C
Sbjct: 82  IDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLV-SYTFLSCPNEVAKSSRFDSIPC 140

Query: 136 LSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEG-FIIDLN-SDLPLTWSL 193
           L NSTTS LAT+S+    SM+ SCQI+ TL VP+SR V   +  F  D+N  DL L W  
Sbjct: 141 LGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVIAKKSRFSTDVNDKDLWLKWDS 200

Query: 194 PDCIDCEARGQICGFKSRNSQEIGC--FNNSKPGGSNGGLQVFRILALSIAIPALICASA 251
           P C DCE     CGF+S  S ++ C  F NS   G N   QV +I+ LSI  P  I A+ 
Sbjct: 201 PSCSDCERDFLRCGFRSNTSLQVKCFPFENS---GYNTEPQVLKIILLSIIGPLTIFATC 257

Query: 252 IGICACCTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNS 311
           I +  C ++R     +Q N    A+ P   I+T GLDES IES++K  LGES+RLPG N 
Sbjct: 258 IAVGVCTSERF-ASLIQRNVAIAALQPNEVIVTTGLDESIIESYKKTELGESRRLPGNND 316

Query: 312 S-ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHAS 365
              CPICLSE+ S+ET+RCIPEC HCFH+ECID WL+++  CP+CRNS +P   +
Sbjct: 317 DIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCPLCRNSPSPARQA 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2

 Score =  289 bits (739), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 211/344 (61%), Gaps = 13/344 (3%)

Query: 29  DNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYD 88
           +++  RFPF L   QPE+C Y GFNL C     T LKLP S  F V+ I+Y TQ+I L D
Sbjct: 37  ESVVARFPFSLFSYQPESCGYSGFNLICKDDANTTLKLPKSEPFLVKEIDYETQRIRLND 96

Query: 89  PEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQV-IKSRFTTIDCLSNSTTSVLATS 147
           PE+CL +RL +F+ SGSPF +   S NYTFL CP +  I + F  IDCL N+T+S     
Sbjct: 97  PENCLARRLLNFDPSGSPF-SFLRSRNYTFLICPKEANITASFRAIDCLGNTTSSFFV-- 153

Query: 148 SVSFVN--SMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDCIDCEAR-GQ 204
            V F N  SM SSC I   L +P S  V Y        + D+ L W  PDC DCE R   
Sbjct: 154 -VQFENLGSMPSSCHIFKILPLPFSWFVAYTTYPDGQNSRDMWLKWDSPDCRDCERRTNS 212

Query: 205 ICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCTDR--S 262
            CGFK+  S ++ CF++  PG  N GLQV +I+ LS+  P       +G+  C ++R  S
Sbjct: 213 RCGFKNNTSHQVECFSSVNPGLHNTGLQVLKIMCLSLVGPLTALTFCVGLVMCSSERVSS 272

Query: 263 RLGSMQLNSTPTAVVPQP--PIMTVGLDESTIESFQKLVLGESKRLP-GPNSSACPICLS 319
           ++    +     +V  QP   +  +GLDESTIES++K+ LGES+RLP G N   CPICLS
Sbjct: 273 QIQQAVVARLSGSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLS 332

Query: 320 EFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH 363
           E+ ++ET+RC+PEC+HCFH ECID WL+L+  CPVCR++ +P+ 
Sbjct: 333 EYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPSPLR 376

Arabidopsis thaliana (taxid: 3702)

>sp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/342 (44%), Positives = 209/342 (61%), Gaps = 14/342 (4%)

Query: 19  SESCQVHFCAD-NIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNI 77
           S + + H C    +P+RFPF         C +P FNL CT+   TVL+LP SG FFV+ I
Sbjct: 31  SSNSRPHRCGPLEVPIRFPF---------CDHPLFNLLCTNLNNTVLQLPMSGTFFVQYI 81

Query: 78  NYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQ-VIKSRFTTIDCL 136
           +Y  QQIY+ DPE+CL KRL +FN+SGSPF   F +  YTFL+CP + V+ S + +I CL
Sbjct: 82  DYRKQQIYINDPENCLAKRLLTFNISGSPFSPRFDTL-YTFLTCPNELVLPSWYPSIPCL 140

Query: 137 SNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDC 196
           SNST+S  ATS+ +   SM+ SCQI+  + VP   P   +  F   LN  L L W+ P+C
Sbjct: 141 SNSTSSFFATSNFALAESMLPSCQIVKRIYVPADSPFA-ETRFSSYLNQSLLLEWNSPNC 199

Query: 197 IDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICA 256
             CE     CGFK++ S E+ CF   K G  +  + V  ++ LSI    ++  + I I  
Sbjct: 200 RGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSRAV-VAVLICLSIIGAVILFVTCIAIRI 258

Query: 257 CCTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPI 316
             T R R  ++   +      P+  + T GLD+STIE ++ + LGES+R PG N   CPI
Sbjct: 259 HNTPRRRHWAVPAAAATVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPI 318

Query: 317 CLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
           CLSE++S+ET+R IPEC HCFHA+CID WL+++  CP+CRNS
Sbjct: 319 CLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCRNS 360

Arabidopsis thaliana (taxid: 3702)

>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana GN=ATL21C PE=3 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/343 (43%), Positives = 199/343 (58%), Gaps = 37/343 (10%)

Query: 31  IPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPE 90
           +P+RFPF         C++  FNL CT    TVL+LP SG F VR+I+Y  Q+IY+ DP 
Sbjct: 44  VPIRFPF---------CNHARFNLHCTDLNKTVLELPMSGTFLVRDIDYRRQKIYINDP- 93

Query: 91  DCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVI-KSRFTTIDCLSNSTTSVLATSSV 149
           +CL KRL +FN+SGSPF   F    YTFLSCP +V+  S + +I CLSNST+S  ATS+ 
Sbjct: 94  NCLAKRLLTFNISGSPFSPHF-DILYTFLSCPNEVVLPSWYPSIPCLSNSTSSFFATSNY 152

Query: 150 SFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSD-LPLTWSLPDCIDCEARGQICGF 208
           S   SM+ SCQI+  L VP + P   +  F  DLN+  L L W+LPDC     R +  G 
Sbjct: 153 SLAQSMLPSCQIVKRLHVPATSPFG-ETRFSSDLNNQSLLLEWALPDC-----RAKCLGA 206

Query: 209 KSR-----NSQEIGC----FNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICACCT 259
             +     NS    C      +S+    NG L    +L L I++ A+     + +   C 
Sbjct: 207 TKKTGTIYNSNIFSCSFSFLYDSRELFINGNLSS-GVLVLVISLSAV----TVFVFPTCI 261

Query: 260 DRSRLGSMQLNSTPTAVV----PQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACP 315
                 S + +S   A      P+  +   GLD+STIE+F+K+ LGES+RL G N   CP
Sbjct: 262 AIRLYDSERFDSAIAAATVMQQPREVMARRGLDQSTIETFKKMELGESRRLSGTNGIVCP 321

Query: 316 ICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
           ICLSE+ S+ET+R IPEC HCFH ECID WL+++  CP+CRNS
Sbjct: 322 ICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLCRNS 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 183/302 (60%), Gaps = 14/302 (4%)

Query: 69  SGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKS 128
           SG F V  INY  QQI + DPE+C+ KRL +FN SGSPF   F S  YTFL+CP +V+  
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGF-SFYYTFLTCPNEVVIP 60

Query: 129 RFT--TIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPI----SRPVHYDEGF-II 181
            ++  +I CLSNST+S  ATS+++F   +  SCQI+  L VP+       +  ++GF  +
Sbjct: 61  VWSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTV 120

Query: 182 DLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSI 241
               ++ L WS P+C  CE     CGFK++ S E+  +    P  +   L+   I    I
Sbjct: 121 PWLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVK-YLADPPDETKSRLRPLIITLCII 179

Query: 242 AIPALICASAIGICACCTDR---SRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKL 298
                 C +AI I    ++R    R  +  + +  T   P+  ++T GLD+STIES++K+
Sbjct: 180 GGITATCIAAIRIYN--SERFVNQRRQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKV 237

Query: 299 VLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
            LGES+RLPG N   CPICLSE+ S+ET+RC+PEC HCFH +CIDEWL+++  CPVCRNS
Sbjct: 238 ELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297

Query: 359 AT 360
            +
Sbjct: 298 RS 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL42|ATL69_ARATH Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 2/126 (1%)

Query: 238 ALSIAIPALICASAIGICACCTDRSR-LGSMQLNSTPTAVVPQPPI-MTVGLDESTIESF 295
            ++IA+  L+  S I + +    RS+  G  +  S     +P P   + +GLD   IES+
Sbjct: 16  GIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESY 75

Query: 296 QKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
            ++VLG+S+RLP PN+  C ICL ++ ++E +RCIPEC HCFH +C+DEWLR +  CP+C
Sbjct: 76  PRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLC 135

Query: 356 RNSATP 361
           RNS  P
Sbjct: 136 RNSPAP 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 4/82 (4%)

Query: 286 GLDESTIESFQKLVLGESKRLPGPNSSAC-PICLSEFLSQETIRCIPECKHCFHAECIDE 344
           GLDE TI+S+ K++  E+K   GP +++C  ICL ++  +  +R +P+C H FH +CID 
Sbjct: 121 GLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 177

Query: 345 WLRLNDKCPVCRNSATPVHASS 366
           WLRLN  CPVCR S  P   S+
Sbjct: 178 WLRLNPTCPVCRTSPLPTPLST 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 9/94 (9%)

Query: 282 IMTVGLDESTIESFQK---------LVLGESKRLPGPNSSACPICLSEFLSQETIRCIPE 332
           ++  GLD S I S+ K         +V G+         + C ICL E++ +E +R +PE
Sbjct: 95  VVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPE 154

Query: 333 CKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366
           CKH FH  C+D WL+LN  CPVCRNS  P   S+
Sbjct: 155 CKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQST 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 286 GLDESTIESFQKLVLGESKRLP-GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDE 344
           GLD S IE+F        K L  G  +  CP+CL+EF   ET+R IP+C H FH  CID 
Sbjct: 89  GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDA 148

Query: 345 WLRLNDKCPVCRNSATPVHASSVN 368
           WLR    CP+CR +  PV   SV+
Sbjct: 149 WLRSQTTCPLCRANLVPVPGESVS 172

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana GN=ATL36 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 59/121 (48%), Gaps = 12/121 (9%)

Query: 241 IAIPALICASAIGICACCTD----RSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQ 296
           IAI  L    ++G+ +CC      R  +G+   +   +           GL++  IESF 
Sbjct: 52  IAIVVLAIFISLGMVSCCLHCIFYREEIGAAGQDVLHSRA-------RRGLEKEVIESFP 104

Query: 297 KLVLGESKRLP-GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
             +  E K L  G     C ICLSEF  QET+R +P C H FHA CID WL     CPVC
Sbjct: 105 TFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVC 164

Query: 356 R 356
           R
Sbjct: 165 R 165

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
224067976	373	predicted protein [Populus trichocarpa]	0.994	0.983	0.587	1e-122
255564721	374	RING-H2 finger protein ATL3K, putative [	0.943	0.930	0.593	1e-115
225454522	372	PREDICTED: putative RING-H2 finger prote	0.978	0.970	0.573	1e-114
356560276	378	PREDICTED: putative RING-H2 finger prote	0.994	0.970	0.531	1e-102
388511883	371	unknown [Medicago truncatula]	0.967	0.962	0.539	1e-100
358349275	371	RING finger protein [Medicago truncatula	0.967	0.962	0.539	1e-100
356571242	506	PREDICTED: putative RING-H2 finger prote	0.951	0.693	0.542	2e-99
356522514	372	PREDICTED: putative RING-H2 finger prote	0.983	0.975	0.507	8e-98
449432054	382	PREDICTED: putative RING-H2 finger prote	0.932	0.900	0.497	2e-90
449477933	382	PREDICTED: putative RING-H2 finger prote	0.932	0.900	0.497	2e-90

>gi|224067976|ref|XP_002302627.1| predicted protein [Populus trichocarpa] gi|222844353|gb|EEE81900.1| predicted protein [Populus trichocarpa]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/373 (58%), Positives = 267/373 (71%), Gaps = 6/373 (1%)

Query: 1   MCIIQVFFFLFFLFSFIHSESCQVHFCA-DNIPVRFPFQLHGKQPENCSYPGFNLTCTSQ 59
           MCI++V F +  L     +  C +  C+  ++PVRFPF++ G+QP NC YPGF+L+C +Q
Sbjct: 1   MCILEVLFLIKLLHFINAAADCSISTCSIGDVPVRFPFRIEGQQPRNCGYPGFDLSCNNQ 60

Query: 60  GITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFL 119
             TVLKLP+SG+F VR+INY+TQQI LYD ++CL KRL   NLSGSPF+  F   NYTFL
Sbjct: 61  SSTVLKLPHSGDFLVRDINYLTQQIQLYDSDNCLAKRLLQLNLSGSPFLG-FFHQNYTFL 119

Query: 120 SCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGF 179
           SCP Q++KSRFTTI+CLSNST SVLATSS++ VN M SSC +ISTL +P+S PV Y+EGF
Sbjct: 120 SCPTQLVKSRFTTINCLSNSTISVLATSSLNLVNEMSSSCDVISTLKIPVSWPVKYNEGF 179

Query: 180 IIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILAL 239
             DL+ +L LTW  PDC  CE +G +CGF    SQEIGCF +SK G S   L+VF I  L
Sbjct: 180 TSDLSENLLLTWFSPDCNKCETQGSMCGFHGNASQEIGCFYDSKKGKSASDLRVFGIFIL 239

Query: 240 SIAIPALICASAIGICACCT----DRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESF 295
            I IP L+CAS I I           +   + Q NST  AV PQP I+ +GLDESTIESF
Sbjct: 240 LIGIPVLVCASGIAISLYLMPWHPRTNEANATQRNSTIAAVSPQPTILVLGLDESTIESF 299

Query: 296 QKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC 355
            KLVLGESKRLPGPN S C ICLSE+ S+ET+R IPECKHCFHA+C+DEWLR+N  CPVC
Sbjct: 300 DKLVLGESKRLPGPNGSTCAICLSEYNSKETVRIIPECKHCFHADCVDEWLRMNSTCPVC 359

Query: 356 RNSATPVHASSVN 368
           R S +P H  S N
Sbjct: 360 RKSPSPAHVRSSN 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564721|ref|XP_002523355.1| RING-H2 finger protein ATL3K, putative [Ricinus communis] gi|223537443|gb|EEF39071.1| RING-H2 finger protein ATL3K, putative [Ricinus communis]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/357 (59%), Positives = 264/357 (73%), Gaps = 9/357 (2%)

Query: 19  SESCQVHFCA-DNIPVRFPFQLHGKQPEN-CSYPGFNLTCTSQGITVLKLPNSGEFFVRN 76
           SE C V  C+ D +PVRFPF+L G Q +  C YPGFNL+C +Q  TVLKLP SG+F VR 
Sbjct: 19  SEHCAVSKCSNDKVPVRFPFRLEGLQSQQQCGYPGFNLSCNNQRKTVLKLPYSGDFLVRG 78

Query: 77  INYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRFTTIDCL 136
           INY+TQQI LYDP++C+PKRL SFNLSGSPF+A     NYTFLSCP+Q+++SRFTTI+CL
Sbjct: 79  INYLTQQIQLYDPDNCIPKRLLSFNLSGSPFLAA-AHQNYTFLSCPSQLVESRFTTINCL 137

Query: 137 SNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLTWSLPDC 196
           SNSTTSVLAT+S S  +S+ +SC +I TL++P S PV YDEGF  +L  DL LTW  P C
Sbjct: 138 SNSTTSVLATASKSIADSLATSCGVIITLSIPFSWPVQYDEGFSNELMDDLQLTWYSPAC 197

Query: 197 IDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICASAIGICA 256
            +CE  G +CGFK+ NS+++GCF +SK G S G LQ+ R++ LS+A+P++I A  I   A
Sbjct: 198 EECEQEGGMCGFKTNNSEDVGCFYSSKTGQSTGALQILRVICLSVAVPSIILAGGIVAVA 257

Query: 257 CCTD----RSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRLP-GPNS 311
              D    R+R  + Q NS   AV P P I  VGLDESTIES++K+VLGES RLP G N 
Sbjct: 258 LLIDRVPRRNRRTTNQ-NSATVAVSPLPNIAMVGLDESTIESYEKVVLGESMRLPAGRND 316

Query: 312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASSVN 368
           S C ICL+E+ S+ET+RCIPECKHCFH ECIDEWL++N  CPVCRNS +P+H  S N
Sbjct: 317 STCAICLAEYRSKETLRCIPECKHCFHVECIDEWLKMNSSCPVCRNSPSPLHDRSQN 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454522|ref|XP_002277387.1| PREDICTED: putative RING-H2 finger protein ATL21A [Vitis vinifera] gi|297745433|emb|CBI40513.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/380 (57%), Positives = 278/380 (73%), Gaps = 19/380 (5%)

Query: 1   MCIIQVFFFLFFLFSFIHS-ESCQVHFCADN-IPVRFPFQLHGKQPENCSYPGFNLTCTS 58
           M  + +FFFLF +F  I + E+C V  C  N   + FPF L G+Q +NC YPGFNL+C S
Sbjct: 1   MAFLDIFFFLFSVFPLILAREACPVSRCGSNGSTIGFPFHLVGQQHQNCGYPGFNLSCGS 60

Query: 59  QGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTF 118
            GITVL+LP  GEFFVR INYITQ+I LYDP++CLPKRL +F+++GSPF+A +   NYTF
Sbjct: 61  PGITVLRLPYWGEFFVRGINYITQEIQLYDPDNCLPKRLLAFDITGSPFMAEYY-LNYTF 119

Query: 119 LSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEG 178
           L CP+++ + RFT IDCLSNST+SVLATSS+S V+ M SSCQI++TL VP+S PV  +E 
Sbjct: 120 LICPSELTRFRFTAIDCLSNSTSSVLATSSMSLVSKM-SSCQILTTLAVPVSWPVQNEED 178

Query: 179 FIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGG-----LQV 233
           F  DLNSDL LTW +P C DC+A+G  CGF++ +S E+GCF  S PG  NG      L+V
Sbjct: 179 FSSDLNSDLQLTWDVPSCGDCQAQGGSCGFQNSSSLEVGCF--STPGTDNGSESSGSLRV 236

Query: 234 FRILALSIAIPALICASAIGICACCTDR----SRLGSMQLNSTPTAVVPQPPIMTVGLDE 289
           FRI++LSI +PA+ICA  I    C +DR    SR+ + Q  S  +   PQ P   +GLDE
Sbjct: 237 FRIISLSITLPAIICAVGIAFFICFSDRRRDHSRVNAAQ-QSAASLEAPQEPAAMMGLDE 295

Query: 290 STIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN 349
           STIES+ K+VLGES+R+PG N S CPICLS++ ++ET+RCIP+C HCFHAECIDEWLR+N
Sbjct: 296 STIESYTKVVLGESRRVPGLNDSTCPICLSDYCTKETLRCIPDCGHCFHAECIDEWLRVN 355

Query: 350 DKCPVCRNSATPVHASSVNP 369
             CPVCRNS +PV+   VNP
Sbjct: 356 GSCPVCRNSPSPVY---VNP 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560276|ref|XP_003548419.1| PREDICTED: putative RING-H2 finger protein ATL21A-like [Glycine max]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/380 (53%), Positives = 264/380 (69%), Gaps = 13/380 (3%)

Query: 1   MCIIQVFFFLFFLFSFIHSES--CQVHFCADN-IPVRFPFQLHGKQPENCSYPGFNLTCT 57
           M I++V F  FF+F  I++ S  CQ   C +N I +RFPFQL G +   C YPGFNLTCT
Sbjct: 1   MGILEVLF-PFFVFPVIYAASNDCQFSLCGNNSILIRFPFQLEGDRNPYCGYPGFNLTCT 59

Query: 58  SQGITVLKLPNS-GEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNY 116
           +   TVLK P S G F+VR+INY+TQ+I +YDP+DCLPKRL S N+SGSPF+ TF + +Y
Sbjct: 60  NSSKTVLKFPYSRGAFYVRSINYLTQKIQVYDPDDCLPKRLLSLNISGSPFIPTF-TRDY 118

Query: 117 TFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVH-Y 175
           TFLSCP Q   S+F  IDCLSNST+ V A  ++S +N +  SC +I+ ++VP+S P   Y
Sbjct: 119 TFLSCPFQNAGSQFIPIDCLSNSTSFVSAIPTLSLINPLNESCYVITRVSVPVSGPEQQY 178

Query: 176 DEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFR 235
           ++ F  +L  DL LTW  PDC  CE+R Q+CGF   N+ ++ CF+  + G S  G QVFR
Sbjct: 179 EKNFRDELIEDLRLTWDTPDCKYCESRQQLCGFDPNNNGQLFCFSGYQTGTSRRGTQVFR 238

Query: 236 ILALSIAIPALICASAIGICACCTDR--SRLGSMQLNSTPTAVV-PQPPIMTVGLDESTI 292
           I+ L IA PA + A  +  C C  DR  +   S    S P A + P+P I T GLDESTI
Sbjct: 239 IITLCIAGPAAVFAIVMACCVCYKDRLANIRNSAITRSAPAATISPEPQITTTGLDESTI 298

Query: 293 ESFQKLVLGESKRLPGPNSSAC-PICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK 351
           ES++K+VLGES+R+PGPN++ C  ICLSE+ S+ETIR IPECKHCFHA+CIDEWLR+N  
Sbjct: 299 ESYEKVVLGESRRVPGPNNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTT 358

Query: 352 CPVCRN--SATPVHASSVNP 369
           CPVCRN  S +P+H +S++P
Sbjct: 359 CPVCRNSPSPSPIHVTSIDP 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511883|gb|AFK44003.1| unknown [Medicago truncatula]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/365 (53%), Positives = 254/365 (69%), Gaps = 8/365 (2%)

Query: 1   MCIIQVFFFLFFLFSFIHSESCQVHFCADN-IPVRFPFQLHGKQPENCSYPGFNLTCTSQ 59
           M I++V F+L F   +  ++ C    C +N   +RFPFQL G+Q   C YPGFNL+CT+ 
Sbjct: 1   MDILKVLFYLIFPVVYALND-CPFSLCGNNSFLIRFPFQL-GEQYPYCVYPGFNLSCTND 58

Query: 60  GITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFL 119
             T+LKLP S EF+VR+INY+TQQI LYDP+DCLPKRL   N S SPF+A+F S +YTFL
Sbjct: 59  SKTILKLPYSEEFYVRSINYLTQQIQLYDPDDCLPKRLLRLNFSNSPFIASF-SRDYTFL 117

Query: 120 SCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGF 179
            C +Q I S+F  IDCLSNST  V A  SVSFVNS+ S C +I  L+VPI+RP  + E  
Sbjct: 118 GCSSQNIGSQFIPIDCLSNSTYFVSAIRSVSFVNSL-SGCSVIKNLSVPIARPERFQENL 176

Query: 180 IIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILAL 239
             DL++DL LTW  PDC  CE+   +CGF+S NS ++ CF++ +PG S  GL++FRI+AL
Sbjct: 177 RDDLSADLQLTWDKPDCSYCESHQLMCGFESINSNQVVCFSDYQPGTSRQGLKIFRIIAL 236

Query: 240 SIAIPALICASAIGICACCTDR--SRLGSMQLNSTPTAVVPQPPIMTV-GLDESTIESFQ 296
            +  PALI    +  C C  DR  +   S    S P A+ PQP    + GLDESTIES++
Sbjct: 237 RVTGPALIFVILMASCVCYNDRIGNISRSAASRSAPAAISPQPEATVIAGLDESTIESYE 296

Query: 297 KLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           K+++GES+R+PGPN   C ICL+E+ S+ET+RCIPECKHCFHA+CIDEWLR+N  CPVCR
Sbjct: 297 KVIIGESRRVPGPNDGCCWICLAEYNSKETVRCIPECKHCFHADCIDEWLRMNVTCPVCR 356

Query: 357 NSATP 361
           NS  P
Sbjct: 357 NSPAP 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358349275|ref|XP_003638664.1| RING finger protein [Medicago truncatula] gi|355504599|gb|AES85802.1| RING finger protein [Medicago truncatula]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/365 (53%), Positives = 254/365 (69%), Gaps = 8/365 (2%)

Query: 1   MCIIQVFFFLFFLFSFIHSESCQVHFCADN-IPVRFPFQLHGKQPENCSYPGFNLTCTSQ 59
           M I++V F+L F   +  ++ C    C +N   +RFPFQL G+Q   C YPGFNL+CT+ 
Sbjct: 1   MDILKVLFYLIFPVVYALND-CPFSLCGNNSFLIRFPFQL-GEQYPYCVYPGFNLSCTND 58

Query: 60  GITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFL 119
             T+LKLP S EF+VR+INY+TQQI LYDP+DCLPKRL   N S SPF+A+F S +YTFL
Sbjct: 59  SKTILKLPYSEEFYVRSINYLTQQIQLYDPDDCLPKRLLRLNFSNSPFIASF-SRDYTFL 117

Query: 120 SCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGF 179
            C +Q I S+F  IDCLSNST  V A  SVSFVNS+ S C +I  L+VPI+RP  + E  
Sbjct: 118 GCSSQNIGSQFIPIDCLSNSTYFVSAIRSVSFVNSL-SGCSVIKNLSVPIARPERFQENL 176

Query: 180 IIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILAL 239
             DL++DL LTW  PDC  CE+   +CGF+S NS ++ CF++ +PG S  GL++FRI+AL
Sbjct: 177 RDDLSADLQLTWDKPDCSYCESHQLMCGFESINSNQVVCFSDYQPGTSRQGLKIFRIIAL 236

Query: 240 SIAIPALICASAIGICACCTDR--SRLGSMQLNSTPTAVVPQPPIMTV-GLDESTIESFQ 296
            +  PALI    +  C C  DR  +   S    S P A+ PQP    + GLDESTIES++
Sbjct: 237 CVTGPALIFVILMASCVCYNDRIGNISRSAASRSAPAAISPQPEATVIAGLDESTIESYE 296

Query: 297 KLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           K+++GES+R+PGPN   C ICL+E+ S+ET+RCIPECKHCFHA+CIDEWLR+N  CPVCR
Sbjct: 297 KVIIGESRRVPGPNDGCCWICLAEYNSKETVRCIPECKHCFHADCIDEWLRMNVTCPVCR 356

Query: 357 NSATP 361
           NS  P
Sbjct: 357 NSPAP 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571242|ref|XP_003553788.1| PREDICTED: putative RING-H2 finger protein ATL21A-like [Glycine max]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/361 (54%), Positives = 243/361 (67%), Gaps = 10/361 (2%)

Query: 13  LFSFIHSESCQVHFCADN-IPVRFPFQLHGKQPENC-SYPGFNLTCTSQGITVLKLPNSG 70
            FSF       V F  DN I +RFPFQ+ G Q   C  YPGF LTCT+   TV+KLP +G
Sbjct: 143 FFSFFSLSETLVQFMHDNNILIRFPFQIEGHQHPYCGGYPGFKLTCTNDSKTVIKLPYTG 202

Query: 71  EFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHNYTFLSCPAQVIKSRF 130
           +F VRNINY+ QQI +YDP++CLPKRL S NLSGSPFVA  +  NYTFL CP +   S+F
Sbjct: 203 KFIVRNINYLRQQIQVYDPDNCLPKRLLSLNLSGSPFVAASL-RNYTFLRCPTRNAGSQF 261

Query: 131 TTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPLT 190
             IDCLSNST+ V A  SV+  N +  SC +I  LT P+SRP  Y+E F  DL+ DL LT
Sbjct: 262 IPIDCLSNSTSFVSAILSVNLPNPLPESCHVIKKLTFPVSRPGPYEEIFRDDLSGDLRLT 321

Query: 191 WSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICAS 250
           W  PDC  CE++  +CGF+S NS ++ CF + +      GL+VF I+  SI  PA+I   
Sbjct: 322 WHAPDCRYCESQEALCGFESINSDQVRCFFDYQTAPPQHGLRVFGIITSSIVGPAIIFVI 381

Query: 251 AIGICACCTDR----SRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLGESKRL 306
           AI   A    R    +R+ + Q  S P+A+ PQP I T+GLD+STIES+QKLVLGES+R+
Sbjct: 382 AIACYASLKYRRGNTARIAAAQ-RSEPSAISPQPSIATMGLDDSTIESYQKLVLGESRRV 440

Query: 307 PGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366
           PGPN   C ICLSE+ +++TIRCIPEC HCFHAECIDEWLR+N  CPVCRNS  P H S+
Sbjct: 441 PGPNDGCCTICLSEYKTKDTIRCIPECAHCFHAECIDEWLRMNSTCPVCRNS--PSHPST 498

Query: 367 V 367
            
Sbjct: 499 A 499

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522514|ref|XP_003529891.1| PREDICTED: putative RING-H2 finger protein ATL21A-like [Glycine max]

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 192/378 (50%), Positives = 254/378 (67%), Gaps = 15/378 (3%)

Query: 1   MCIIQVFFFLFFLFSFIH----SESCQVHFCADN-IPVRFPFQLHGKQPENCSYPGFNLT 55
           M I++V F  FF+F  I+    S  CQ   C +N + +RFPFQL G +   C YPGFNLT
Sbjct: 1   MGILEVLF-PFFVFPVIYAVATSNDCQFSVCGNNSVLIRFPFQLDGDRNPYCGYPGFNLT 59

Query: 56  CTSQGITVLKLPNSGEFFVRNINYITQQIYLYDPEDCLPKRLQSFNLSGSPFVATFVSHN 115
           CT+   TVLKLP SG F+VR+INY+TQ+I +YDP+DCLPKRL + N+SGSPF+ TF + +
Sbjct: 60  CTNNSKTVLKLPYSGAFYVRSINYLTQKIQVYDPDDCLPKRLLTLNVSGSPFIPTF-TRD 118

Query: 116 YTFLSCPAQVIKSRFTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPV-H 174
           YTFLSCP Q   S+F  IDCLSNST  V A  +++  N +  SC +I+ ++VP+S P   
Sbjct: 119 YTFLSCPFQNAGSQFIPIDCLSNSTNFVSAVPTLNLTNPLPESCNVITRVSVPVSGPEQQ 178

Query: 175 YDEGFIIDLNSDLPLTWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVF 234
           Y+E    +L+ DL LTW  PDC  CE+  Q+CGF   N+ ++ CF   +   S  G QVF
Sbjct: 179 YEENHRDELSEDLRLTWDRPDCRYCESGQQLCGFDPDNNGQLFCFPGYQTVTSRRGAQVF 238

Query: 235 RILALSIAIPALICASAIGICACCTDRSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIES 294
           RI+   IA PA + A  +  C C  DR        ++    + P P I T GLDESTIES
Sbjct: 239 RIITFCIAGPAAVIAIVMACCVCYKDR----LTNRSALAATISPVPQIATTGLDESTIES 294

Query: 295 FQKLVLGESKRLPGPNSSA-CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCP 353
           ++K+V+GES+R+PGPN++  C ICLSE+ S+ETIR IPECKHCFHA+CIDEWLR+N  CP
Sbjct: 295 YEKMVVGESRRVPGPNNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTTCP 354

Query: 354 VCRN--SATPVHASSVNP 369
           VCRN  S +P+H +S++P
Sbjct: 355 VCRNSPSPSPLHVTSIDP 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432054|ref|XP_004133815.1| PREDICTED: putative RING-H2 finger protein ATL21A-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/360 (49%), Positives = 226/360 (62%), Gaps = 16/360 (4%)

Query: 15  SFIHSESCQVHFCA-DNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFF 73
           + I ++SC V  C  D+  +RFPF++  +QP  C YPGFNL C   G+T + L  S  F 
Sbjct: 17  TLITAQSCSVSKCINDDFAIRFPFRIPDQQPARCGYPGFNLACNKAGVTTVNLSASEYFL 76

Query: 74  VRNINYITQQIYLYDPEDCLPKRL-QSFN---LSGSPFVATFVSHNYTFLSCPAQVIKSR 129
           VR I+Y TQQI LYD +DCLP RL Q FN    S SPF+  F S N TFLSCP +   S 
Sbjct: 77  VRGIDYATQQIQLYDSDDCLPGRLLQGFNKINFSNSPFMPLF-SQNITFLSCPPRFTMSH 135

Query: 130 FTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPL 189
           F  IDCLSNSTTS+LATSS SFV SM +SC I+ TL VP+S P   ++ F  DLN DL L
Sbjct: 136 FPIIDCLSNSTTSILATSSTSFVKSMSTSCTIMKTLPVPVSNPDETNQ-FSTDLNGDLVL 194

Query: 190 TWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICA 249
           TW  P C  CE  G++CG+KS + Q I CF+       N GL+V RI+ + I +P LIC 
Sbjct: 195 TWDSPACGICETEGRLCGYKSNSGQGISCFDKYT-SEENNGLRVLRIICVVILLPTLICV 253

Query: 250 SAIGICACCTD--------RSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLG 301
             +G   C           R      +    P     + P    GL+ESTIES+QK++LG
Sbjct: 254 FGLGCFICLAKWSYSLTDGRGNQVQHRQQVNPAGSDLEAPTRLSGLNESTIESYQKVILG 313

Query: 302 ESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           ES+RLPGPN + C ICL E+L+++T+RCIPECKHCFH +CID+WLR+N  CP+CRNS  P
Sbjct: 314 ESRRLPGPNGTTCSICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPNP 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477933|ref|XP_004155166.1| PREDICTED: putative RING-H2 finger protein ATL21A-like [Cucumis sativus]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/360 (49%), Positives = 226/360 (62%), Gaps = 16/360 (4%)

Query: 15  SFIHSESCQVHFCA-DNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFF 73
           + I ++SC V  C  D+  +RFPF++  +QP  C YPGFNL C   G+T + L  S  F 
Sbjct: 17  TLITAQSCSVSKCINDDFAIRFPFRIPDQQPARCGYPGFNLACNKAGVTTVNLSASEYFL 76

Query: 74  VRNINYITQQIYLYDPEDCLPKRL-QSFN---LSGSPFVATFVSHNYTFLSCPAQVIKSR 129
           VR I+Y TQQI LYD +DCLP RL Q FN    S SPF+  F S N TFLSCP +   S 
Sbjct: 77  VRGIDYATQQIQLYDSDDCLPGRLFQGFNKINFSNSPFMPLF-SQNITFLSCPPRFTMSH 135

Query: 130 FTTIDCLSNSTTSVLATSSVSFVNSMISSCQIISTLTVPISRPVHYDEGFIIDLNSDLPL 189
           F  IDCLSNSTTS+LATSS SFV SM +SC I+ TL VP+S P   ++ F  DLN DL L
Sbjct: 136 FPIIDCLSNSTTSILATSSTSFVKSMSTSCTIMKTLPVPVSNPDETNQ-FSTDLNGDLVL 194

Query: 190 TWSLPDCIDCEARGQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRILALSIAIPALICA 249
           TW  P C  CE  G++CG+KS + Q I CF+       N GL+V RI+ + I +P LIC 
Sbjct: 195 TWDSPACGICETEGRLCGYKSNSGQGISCFDKYT-SEENNGLRVLRIICVVILLPTLICV 253

Query: 250 SAIGICACCTD--------RSRLGSMQLNSTPTAVVPQPPIMTVGLDESTIESFQKLVLG 301
             +G   C           R      +    P     + P    GL+ESTIES+QK++LG
Sbjct: 254 FGLGCFICLAKWSYSLTDGRGNQVQHRQQVNPAGSDLEAPTRLSGLNESTIESYQKVILG 313

Query: 302 ESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           ES+RLPGPN + C ICL E+L+++T+RCIPECKHCFH +CID+WLR+N  CP+CRNS  P
Sbjct: 314 ESRRLPGPNGTTCSICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPNP 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2040085	377	AT2G25410 [Arabidopsis thalian	0.913	0.893	0.418	1.9e-67
TAIR|locus:2010489	299	AT1G28040 [Arabidopsis thalian	0.230	0.284	0.623	8.7e-53
TAIR|locus:2169399	159	AT5G07040 [Arabidopsis thalian	0.273	0.635	0.475	7.6e-25
TAIR|locus:2039170	217	AT2G35910 [Arabidopsis thalian	0.211	0.359	0.475	9.5e-18
TAIR|locus:2062892	214	AT2G46160 [Arabidopsis thalian	0.227	0.392	0.422	1.4e-15
TAIR|locus:2082762	212	AT3G61550 [Arabidopsis thalian	0.230	0.400	0.404	4.1e-15
TAIR|locus:2122348	132	AT4G09100 [Arabidopsis thalian	0.205	0.575	0.428	5.3e-15
TAIR|locus:2009527	381	ATL15 "Arabidopsis toxicos en	0.224	0.217	0.464	3.7e-14
TAIR|locus:2144088	197	AT5G06490 [Arabidopsis thalian	0.216	0.406	0.388	5.8e-14
TAIR|locus:2053776	217	AT2G42350 [Arabidopsis thalian	0.227	0.387	0.404	9.9e-14

TAIR|locus:2040085 AT2G25410 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 147/351 (41%), Positives = 196/351 (55%)

Query:    22 CQVHFCA-DNIPVRFPFQLHGKQPENCSYPGFNLTCTSQGITVLKLPNSGEFFVRNINYI 80
             C    C+ +++  RFPF L   QPE+C Y GFNL C     T LKLP S  F V+ I+Y 
Sbjct:    29 CYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTTLKLPKSEPFLVKEIDYE 88

Query:    81 TQQIYLYDPEDCLPKRLQSFNLSGSPFVATFV-SHNYTFLSCPAQV-IKSRFTTIDCLXX 138
             TQ+I L DPE+CL +RL +F+ SGSPF  +F+ S NYTFL CP +  I + F  IDCL  
Sbjct:    89 TQRIRLNDPENCLARRLLNFDPSGSPF--SFLRSRNYTFLICPKEANITASFRAIDCLGN 146

Query:   139 XXXXXXXXXXXXXXXXXXXXCQIISTLTVPISRPVHYDEGFIIDLNS-DLPLTWSLPDCI 197
                                 C I   L +P S  V Y   +    NS D+ L W  PDC 
Sbjct:   147 TTSSFFVVQFENLGSMPSS-CHIFKILPLPFSWFVAYTT-YPDGQNSRDMWLKWDSPDCR 204

Query:   198 DCEAR-GQICGFKSRNSQEIGCFNNSKPGGSNGGLQVFRXXXXXXXXXXXXXXXXXXXXX 256
             DCE R    CGFK+  S ++ CF++  PG  N GLQV +                     
Sbjct:   205 DCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTGLQVLKIMCLSLVGPLTALTFCVGLVM 264

Query:   257 XXTDR--SRLGSMQLNSTPTAVVPQPP--IMTVGLDESTIESFQKLVLGESKRLP-GPNS 311
               ++R  S++    +     +V  QP   +  +GLDESTIES++K+ LGES+RLP G N 
Sbjct:   265 CSSERVSSQIQQAVVARLSGSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSND 324

Query:   312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV 362
               CPICLSE+ ++ET+RC+PEC+HCFH ECID WL+L+  CPVCR++ +P+
Sbjct:   325 VVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPSPL 375

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2010489 AT1G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
 Identities = 53/85 (62%), Positives = 69/85 (81%)

Query:   274 TAVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPEC 333
             T   P+  ++T GLD+STIES++K+ LGES+RLPG N   CPICLSE+ S+ET+RC+PEC
Sbjct:   213 TTQQPRGVVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPEC 272

Query:   334 KHCFHAECIDEWLRLNDKCPVCRNS 358
              HCFH +CIDEWL+++  CPVCRNS
Sbjct:   273 DHCFHVQCIDEWLKIHSSCPVCRNS 297

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2169399 AT5G07040 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 49/103 (47%), Positives = 69/103 (66%)

Query:   261 RSR-LGSMQLNSTPTAVVPQPPI-MTVGLDESTIESFQKLVLGESKRLPGPNSSACPICL 318
             RS+  G  +  S     +P P   + +GLD   IES+ ++VLG+S+RLP PN+  C ICL
Sbjct:    39 RSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICL 98

Query:   319 SEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
              ++ ++E +RCIPEC HCFH +C+DEWLR +  CP+CRNS  P
Sbjct:    99 CDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAP 141

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2039170 AT2G35910 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 39/82 (47%), Positives = 53/82 (64%)

Query:   286 GLDESTIESFQKLVLGESKRLPGPNS-SACPICLSEFLSQETIRCIPECKHCFHAECIDE 344
             GLDE TI+S+ K++  E+K   GP + S C ICL ++  +  +R +P+C H FH +CID 
Sbjct:   121 GLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 177

Query:   345 WLRLNDKCPVCRNSATPVHASS 366
             WLRLN  CPVCR S  P   S+
Sbjct:   178 WLRLNPTCPVCRTSPLPTPLST 199

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2062892 AT2G46160 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 38/90 (42%), Positives = 50/90 (55%)

Query:   283 MTVGLDESTIESFQKLVLGE------SKRLPGPNSSACPICLSEFLSQETIRCIPECKHC 336
             + VGLD++ I S+ K    +      S    G   + C ICL E+   E +R +PECKH 
Sbjct:   101 VVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHY 160

Query:   337 FHAECIDEWLRLNDKCPVCRNSATPVHASS 366
             FH  C+D WL+LN  CPVCRNS  P   S+
Sbjct:   161 FHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2082762 AT3G61550 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 38/94 (40%), Positives = 52/94 (55%)

Query:   282 IMTVGLDESTIESFQK---------LVLGESKRLPGPNSSACPICLSEFLSQETIRCIPE 332
             ++  GLD S I S+ K         +V G+         + C ICL E++ +E +R +PE
Sbjct:    95 VVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPE 154

Query:   333 CKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366
             CKH FH  C+D WL+LN  CPVCRNS  P   S+
Sbjct:   155 CKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQST 188

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2122348 AT4G09100 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 33/77 (42%), Positives = 45/77 (58%)

Query:   286 GLDESTIESFQKLVLGESKRL-PGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDE 344
             GLD   I+SF   V  E++ + PG     C +CL+EF   ET+R +P C H FHA+C+D 
Sbjct:    56 GLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDI 115

Query:   345 WLRLNDKCPVCRNSATP 361
             WL  +  CP+CR    P
Sbjct:   116 WLSHSSTCPICRAKVVP 132

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2009527 ATL15 "Arabidopsis toxicos en levadura 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 39/84 (46%), Positives = 48/84 (57%)

Query:   286 GLDESTIESFQKLVLGESKRLP-GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDE 344
             GLD S IE+F        K L  G  +  CP+CL+EF   ET+R IP+C H FH  CID 
Sbjct:    89 GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDA 148

Query:   345 WLRLNDKCPVCRNSATPVHASSVN 368
             WLR    CP+CR +  PV   SV+
Sbjct:   149 WLRSQTTCPLCRANLVPVPGESVS 172

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0033591 "response to L-ascorbic acid" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2144088 AT5G06490 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 5.8e-14, P = 5.8e-14
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query:   282 IMTVGLDESTIESFQKLVLGESK-----RLPGPNSSACPICLSEFLSQETIRCIPECKHC 336
             +  +GL E  I+ F KL   E++     +     +S C ICL+++   + IR +P+C H 
Sbjct:    92 VEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHL 151

Query:   337 FHAECIDEWLRLNDKCPVCRNSATP 361
             FH  C+D WLRL+  CPVCR S  P
Sbjct:   152 FHDNCVDPWLRLHPTCPVCRTSPLP 176

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2053776 AT2G42350 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 9.9e-14, P = 9.9e-14
 Identities = 36/89 (40%), Positives = 45/89 (50%)

Query:   275 AVVPQPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECK 334
             +VV QPP    GLD   I S    V+G    + G   + C +CLS    ++  R +P CK
Sbjct:    66 SVVSQPPKR--GLDSLVIASLPTFVVGIKNDVAG---TECAVCLSLLEEKDNARMLPNCK 120

Query:   335 HCFHAECIDEWLRLNDKCPVCRNSATPVH 363
             H FH  C+D WL     CPVCR  A P H
Sbjct:   121 HVFHVSCVDTWLTTQSTCPVCRTEAEPSH 149

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CH01	AT21A_ARATH	No assigned EC number	0.5070	0.9295	0.9220	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	8e-12
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-08
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	4e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	6e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	4e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	4e-05
smart00184	40	smart00184, RING, Ring finger	2e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	0.001
pfam13947	106	pfam13947, GUB_WAK_bind, Wall-associated receptor	0.003
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           CPICL EF   E +  +P C H FH EC+D+WLR ++ CP+CR
Sbjct: 3   CPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 314 CPICLSEF---------LSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C IC + F            +      EC H FH  CI  WL+  + CP+CR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCR 356
           CPICL EF        +  C H F   CID+WL+     CP+CR
Sbjct: 2   CPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWL-RLNDKCPVCRNSATP 361
           C IC+S F+  + +R +P C H FH  C+D+WL   ++KCPVCR +  P
Sbjct: 326 CAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           CPICL     ++ +   P C H F  ECI  +L+   KCP+CR
Sbjct: 5   CPICLDLL--RDPVVLTP-CGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 314  CPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSATPV 362
            C IC S     +    + RC   CK+ FH  C+ +W        CP+CR+  T V
Sbjct: 1472 CAICYSVLDMVDRSLPSKRC-ATCKNKFHTRCLYKWFASSARSNCPLCRSEITFV 1525

Length = 1525

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 314 CPICLSEFLSQET----IRCIPECKHCFHAECIDEWLRLNDKCPVCRN 357
           C IC+ +   +E        +  C H F  ECID W +  + CPVCR 
Sbjct: 177 CAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT 224

Length = 238

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVC 355
           CPICL E+L  +    +P C H F   CI +WL   N+ CP+C
Sbjct: 1   CPICLEEYL--KDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 314 CPICLSEFLS-QETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           CP C        E       C H FH  CI  WL     CP+ R
Sbjct: 34  CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|222467 pfam13947, GUB_WAK_bind, Wall-associated receptor kinase galacturonan-binding

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 30 NIPVRFPFQLHGKQPENCSY-PGFNLTCTSQGITVLKLPNSGEFFVRNINYITQQIYLYD 88
          N+ + +PF   G  P  C+  PGF LTC +       L  +G + V +I+     + + D
Sbjct: 10 NVSIPYPF---GIGP-GCARDPGFELTCNNTTSPPRLLLGNGNYEVLSISLANGTVRVLD 65

Query: 89 P 89
          P
Sbjct: 66 P 66

This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins. Length = 106

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C IC    +S   I C   C H F + CI   L     CPVCR
Sbjct: 28  CRIC-DCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCR 66

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
PF13947	106	GUB_WAK_bind: Wall-associated receptor kinase gala	99.77
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.76
PF14380	94	WAK_assoc: Wall-associated receptor kinase C-termi	99.62
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.57
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.34
PHA02929	238	N1R/p28-like protein; Provisional	99.34
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.27
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.02
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.95
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.91
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.87
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.81
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.74
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.68
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.65
PF14634	44	zf-RING_5: zinc-RING finger domain	98.65
PHA02926	242	zinc finger-like protein; Provisional	98.64
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.64
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.62
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.6
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.57
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.45
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.37
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.32
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.3
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.28
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.28
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.22
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.21
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.04
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.03
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.97
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.8
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.77
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.74
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.52
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.49
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.33
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.33
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.21
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.17
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.16
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.09
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.78
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	96.73
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.64
KOG4445	368	consensus Uncharacterized conserved protein, conta	96.64
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.59
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.55
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.47
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.46
PHA02862	156	5L protein; Provisional	96.4
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.23
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.17
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.16
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.95
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.94
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.89
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.86
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.1
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	95.03
KOG0297	391	consensus TNF receptor-associated factor [Signal t	94.92
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	94.82
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.31
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.27
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.03
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.0
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	93.94
PHA03096	284	p28-like protein; Provisional	93.75
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.62
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.14
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	92.51
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	92.14
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.04
COG5152	259	Uncharacterized conserved protein, contains RING a	92.03
KOG1002	791	consensus Nucleotide excision repair protein RAD16	91.84
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	91.63
KOG1940	276	consensus Zn-finger protein [General function pred	91.29
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	91.13
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	89.87
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	89.4
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.03
PF04641	260	Rtf2: Rtf2 RING-finger	88.92
KOG2660	331	consensus Locus-specific chromosome binding protei	88.52
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	88.39
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	88.18
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	86.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.99
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	84.71
COG5222	427	Uncharacterized conserved protein, contains RING Z	83.94
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	83.83
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	83.26
KOG3053	293	consensus Uncharacterized conserved protein [Funct	82.47
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	82.34
COG5175	480	MOT2 Transcriptional repressor [Transcription]	82.29
KOG1609	323	consensus Protein involved in mRNA turnover and st	81.78
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	81.69
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	80.07

>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding

Probab=99.77  E-value=8.6e-19  Score=138.71  Aligned_cols=97  Identities=30%  Similarity=0.688  Sum_probs=75.7

Q ss_pred             CCCCCCCCCCCCCCcccccccCCCCCCCCCC-CCCeeEecCC-CceeEeCCCcccEEEeEEeecCcEEEEeCC--CCCcc
Q 044271           19 SESCQVHFCADNIPVRFPFQLHGKQPENCSY-PGFNLTCTSQ-GITVLKLPNSGEFFVRNINYITQQIYLYDP--EDCLP   94 (369)
Q Consensus        19 ~~~C~~~~CG~~~~i~yPF~~~~~~~~~Cg~-~~f~l~C~~~-~~~~~~~~~~~~~~V~~I~~~~~~i~v~~~--~~C~~   94 (369)
                      +++|+ .+||| ++|+||||++++    |++ |+|+|+|+++ +.+.+.+. .+.|+|++|+|++++|+|.++  ..|..
T Consensus         1 ~~~C~-~~CGn-v~IpYPFgi~~~----C~~~~~F~L~C~~~~~~~~l~l~-~~~~~V~~I~~~~~~i~v~~~~~~~~~~   73 (106)
T PF13947_consen    1 KPGCP-SSCGN-VSIPYPFGIGPG----CGRDPGFELTCNNNTSPPKLLLS-SGNYEVLSISYENGTIRVSDPISSNCYS   73 (106)
T ss_pred             CCCCC-CccCC-EeecCCCccCCC----CCCCCCcEEECCCCCCCceeEec-CCcEEEEEEecCCCEEEEEeccccceec
Confidence            46897 49999 999999999765    999 9999999885 24566663 578999999999999999995  45544


Q ss_pred             ccc-----cccccCCCCceeecccccEEEEcCCC
Q 044271           95 KRL-----QSFNLSGSPFVATFVSHNYTFLSCPA  123 (369)
Q Consensus        95 ~~~-----~~~~l~~~~f~~s~~~~~~~~~~C~~  123 (369)
                      ...     .+++++. +|.++...|.++++||+.
T Consensus        74 ~~~~~~~~~~~~~~~-~~~~s~~~N~~~~~GC~t  106 (106)
T PF13947_consen   74 SSSSNSSNSNLSLNG-PFFFSSSSNKFTVVGCNT  106 (106)
T ss_pred             CCCCcccccEEeecC-CceEccCCcEEEEECCCC
Confidence            321     1233334 788888889999999974

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5.4e-19  Score=163.16  Aligned_cols=78  Identities=26%  Similarity=0.658  Sum_probs=65.4

Q ss_pred             cCCCCHHHHhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCC-CCCcCCCCcCC
Q 044271          284 TVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK-CPVCRNSATPV  362 (369)
Q Consensus       284 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~-CP~Cr~~~~~~  362 (369)
                      ...+.++.++++|...|.........  +.||||||+|++||++|+|| |+|.||..|||+||.++.+ ||+||+++...
T Consensus       204 ~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  204 RNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             hhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence            34677889999999999875533222  79999999999999999999 9999999999999988755 99999987655


Q ss_pred             CC
Q 044271          363 HA  364 (369)
Q Consensus       363 ~~  364 (369)
                      ..
T Consensus       281 ~~  282 (348)
T KOG4628|consen  281 SG  282 (348)
T ss_pred             CC
Confidence            43

>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal

Probab=99.62  E-value=1.4e-15  Score=117.23  Aligned_cols=86  Identities=28%  Similarity=0.574  Sum_probs=64.8

Q ss_pred             eccCCCCCc-eEEEEeCCcccccccccCccceeeeeccccCC-----CCchhHHHhhcCCeeEEeC--CCCChhhhcCCC
Q 044271          133 IDCLSNSTT-SVLATSSVSFVNSMISSCQIISTLTVPISRPV-----HYDEGFIIDLNSDLPLTWS--LPDCIDCEARGQ  204 (369)
Q Consensus       133 ~~C~~~~~~-~~y~~~~~~~~~~~~~~C~~~~~v~vP~~~~~-----~~~~~~~~~l~~Gf~l~w~--~~~C~~C~~sgG  204 (369)
                      |+|..+++. ..|++...   ..+...|+.+  +.|||....     ....+|.++|++||+|+|+  ..+|.+|++|||
T Consensus         1 ~~C~~~~~~~~~~~v~~~---~~~~~~C~~~--v~vPV~~~~~~~~~~~~~~~~~~L~~GF~L~w~~~~~~C~~C~~SgG   75 (94)
T PF14380_consen    1 INCSINSGNSVSYFVFRS---SDLAGSCQKS--VVVPVLGSAVDSIDGSSGNYEEVLKKGFELEWNADSGDCRECEASGG   75 (94)
T ss_pred             CccccCCCCceeEEEeCC---cccCCcCCEE--EEEEECchhhhccccchhHHHHHHhcCcEEEEeCCCCcCcChhcCCC
Confidence            467666543 34444333   4467899954  567776542     2458899999999999999  478999999999


Q ss_pred             eeecccCCCcceEeecCCCC
Q 044271          205 ICGFKSRNSQEIGCFNNSKP  224 (369)
Q Consensus       205 ~Cg~~~~~~~~~~C~~~~~~  224 (369)
                      +|||+.++ .+|.|+|++++
T Consensus        76 ~Cgy~~~~-~~f~C~C~dg~   94 (94)
T PF14380_consen   76 RCGYDSNS-EQFTCFCSDGP   94 (94)
T ss_pred             EeCCCCCC-ceEEEECCCCC
Confidence            99999765 69999999864

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.57  E-value=7.5e-16  Score=101.40  Aligned_cols=44  Identities=55%  Similarity=1.294  Sum_probs=40.8

Q ss_pred             ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271          312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR  356 (369)
Q Consensus       312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr  356 (369)
                      ++|+||+++|..++.+..++ |+|.||.+||..|++++.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            57999999999999999999 999999999999999999999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.34  E-value=7.2e-13  Score=96.79  Aligned_cols=45  Identities=40%  Similarity=0.983  Sum_probs=36.2

Q ss_pred             cccccccccccccC----------ceeeeeCCCCCccChHhHHHHHhcCCCCCCcC
Q 044271          311 SSACPICLSEFLSQ----------ETIRCIPECKHCFHAECIDEWLRLNDKCPVCR  356 (369)
Q Consensus       311 ~~~C~ICL~~~~~~----------~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr  356 (369)
                      ++.|+||++++.+.          -.+...+ |+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            56799999999322          3444455 999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.34  E-value=7.4e-13  Score=117.62  Aligned_cols=77  Identities=23%  Similarity=0.560  Sum_probs=57.8

Q ss_pred             CCCCHHHHhhccceeeccCCCCCCCCcccccccccccccCc----eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          285 VGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       285 ~g~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      .+..++.++.+|....+-........+.+|+||++++.+.+    .+.+++.|+|.||.+||..|++.+.+||+||.++.
T Consensus       148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            44566777788877654332223345789999999987654    23455569999999999999999999999999875


Q ss_pred             C
Q 044271          361 P  361 (369)
Q Consensus       361 ~  361 (369)
                      .
T Consensus       228 ~  228 (238)
T PHA02929        228 S  228 (238)
T ss_pred             E
Confidence            3

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.9e-12  Score=114.11  Aligned_cols=53  Identities=42%  Similarity=1.118  Sum_probs=48.2

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~  361 (369)
                      ...+.+|+|||++|-.+|+++.+| |+|.||..|++.|+.. +..||+||.++.|
T Consensus       320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            344689999999999999999999 9999999999999985 6679999999876

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.5e-10  Score=105.94  Aligned_cols=52  Identities=31%  Similarity=0.887  Sum_probs=43.7

Q ss_pred             CCCccccccccccc-ccC---------ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEF-LSQ---------ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~-~~~---------~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      ..++..|+||+||+ +.+         .+-+.|| |||++|-.|+..|++++.+||+||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence            45678999999994 443         1336788 9999999999999999999999999953

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.95  E-value=6.9e-10  Score=72.80  Aligned_cols=44  Identities=48%  Similarity=1.262  Sum_probs=37.4

Q ss_pred             cccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCC
Q 044271          313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSA  359 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~  359 (369)
                      .|+||++++  .+.+...+ |+|.||..|++.|++. +..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  44555566 9999999999999987 77899999864

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.91  E-value=8.7e-10  Score=70.30  Aligned_cols=39  Identities=51%  Similarity=1.218  Sum_probs=33.4

Q ss_pred             ccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCc
Q 044271          314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVC  355 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C  355 (369)
                      |+||++++.+  .+..++ |||.|+.+|+..|++.+.+||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999998877  556777 99999999999999999999998

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.87  E-value=1.5e-09  Score=73.34  Aligned_cols=47  Identities=34%  Similarity=0.909  Sum_probs=39.7

Q ss_pred             cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +..|.||+++..+   +..+| |||. |...|+..|++.+..||+||+++..
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            5789999998554   66788 9999 9999999999999999999998753

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.81  E-value=3.4e-09  Score=77.98  Aligned_cols=51  Identities=33%  Similarity=0.778  Sum_probs=39.5

Q ss_pred             Ccccccccccccc--------cCce-eeeeCCCCCccChHhHHHHHhc---CCCCCCcCCCCc
Q 044271          310 NSSACPICLSEFL--------SQET-IRCIPECKHCFHAECIDEWLRL---NDKCPVCRNSAT  360 (369)
Q Consensus       310 ~~~~C~ICL~~~~--------~~~~-~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~~~~  360 (369)
                      .+++|.||...|.        .|+. -.++.+|+|.||..||.+||..   +..||+||++..
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            3789999999987        2222 1234469999999999999975   567999999754

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.74  E-value=9.1e-09  Score=87.83  Aligned_cols=51  Identities=29%  Similarity=0.697  Sum_probs=40.3

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----------------CCCCCCcCCCCcCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----------------NDKCPVCRNSATPV  362 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----------------~~~CP~Cr~~~~~~  362 (369)
                      ..++.+|+||++.+++.   .+++ |||.|+..||..|+..                ...||+||.++...
T Consensus        15 ~~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         15 SGGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            34568999999998654   3356 9999999999999852                35799999987543

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.68  E-value=1e-08  Score=73.13  Aligned_cols=51  Identities=27%  Similarity=0.670  Sum_probs=38.8

Q ss_pred             ccccccccccc-----------cCce-eeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          312 SACPICLSEFL-----------SQET-IRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       312 ~~C~ICL~~~~-----------~~~~-~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ++|+||...+.           .+++ ......|+|.||..||.+||..+..|||+|+.-.-+
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            78888877653           3332 233345999999999999999999999999875433

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9e-09  Score=104.05  Aligned_cols=52  Identities=33%  Similarity=0.835  Sum_probs=45.8

Q ss_pred             CCcccccccccccccCce--eeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQET--IRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~--~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..+..|+||+|++..++.  .+.+| |+|+||..|+..|+++..+||+||..+..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            347899999999999866  67888 99999999999999999999999995443

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.65  E-value=2e-08  Score=65.76  Aligned_cols=44  Identities=30%  Similarity=0.810  Sum_probs=38.8

Q ss_pred             cccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271          313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN  357 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~  357 (369)
                      .|.||+++|.+.+..++++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4899999996666777787 9999999999999877888999985

>PHA02926 zinc finger-like protein; Provisional

Probab=98.64  E-value=1.6e-08  Score=87.09  Aligned_cols=52  Identities=31%  Similarity=0.788  Sum_probs=40.1

Q ss_pred             CCcccccccccccccC-----ceeeeeCCCCCccChHhHHHHHhcC------CCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQ-----ETIRCIPECKHCFHAECIDEWLRLN------DKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~-----~~~~~l~~C~H~fH~~Ci~~wl~~~------~~CP~Cr~~~~  360 (369)
                      ..+.+|+||||..-++     ..-.+|+.|+|.|+..||+.|.+.+      .+||+||....
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            3468999999986433     1234676799999999999999753      45999999754

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.2e-08  Score=89.58  Aligned_cols=52  Identities=31%  Similarity=0.769  Sum_probs=44.1

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH  363 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~  363 (369)
                      ......|.+|||...+..   .+| |||+|+..||..|...+..||+||....+..
T Consensus       236 ~~a~~kC~LCLe~~~~pS---aTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPS---ATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCCceEEEecCCCCCC---cCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            345679999999876654   377 9999999999999999999999999887653

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.62  E-value=1.9e-08  Score=64.86  Aligned_cols=39  Identities=44%  Similarity=1.150  Sum_probs=33.7

Q ss_pred             ccccccccccCceeeeeCCCCCccChHhHHHHHh--cCCCCCCc
Q 044271          314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLR--LNDKCPVC  355 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~--~~~~CP~C  355 (369)
                      |+||++.+.+..  ..++ |+|.|+..|+..|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999977765  5666 999999999999998  56779998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.60  E-value=3.3e-08  Score=62.36  Aligned_cols=38  Identities=47%  Similarity=1.241  Sum_probs=32.5

Q ss_pred             ccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCc
Q 044271          314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVC  355 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~C  355 (369)
                      |+||++.   ......++ |+|.||..|++.|++ .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899998   34566677 999999999999998 67779987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=6.7e-08  Score=80.39  Aligned_cols=52  Identities=33%  Similarity=0.802  Sum_probs=43.8

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +..-..|+|||+.+.+...+. . +|||+|++.||..-++....||+|+..|..
T Consensus       128 ~~~~~~CPiCl~~~sek~~vs-T-kCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVS-T-KCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             cccccCCCceecchhhccccc-c-ccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            455689999999988876643 3 499999999999999999999999986643

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.4e-07  Score=82.02  Aligned_cols=52  Identities=27%  Similarity=0.719  Sum_probs=41.6

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC---CCCCCcCCCCcCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN---DKCPVCRNSATPVH  363 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~Cr~~~~~~~  363 (369)
                      .....+|-||||.  ..|.|..+  |||.|+..||-+||+.+   +.||+||..+....
T Consensus        44 ~~~~FdCNICLd~--akdPVvTl--CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~   98 (230)
T KOG0823|consen   44 DGGFFDCNICLDL--AKDPVVTL--CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT   98 (230)
T ss_pred             CCCceeeeeeccc--cCCCEEee--cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence            3556899999997  45566655  99999999999999763   45899999876543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.37  E-value=2.6e-07  Score=61.71  Aligned_cols=42  Identities=31%  Similarity=0.891  Sum_probs=32.6

Q ss_pred             cccccccccccCceeeeeCCCC-----CccChHhHHHHHhc--CCCCCCcC
Q 044271          313 ACPICLSEFLSQETIRCIPECK-----HCFHAECIDEWLRL--NDKCPVCR  356 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~--~~~CP~Cr  356 (369)
                      .|.||+++..+++. .+.| |.     |.+|..|++.|+..  +.+||+|+
T Consensus         1 ~CrIC~~~~~~~~~-l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDP-LVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCe-eEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48999994444444 4678 84     99999999999955  45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>smart00504 Ubox Modified RING finger domain

Probab=98.32  E-value=6.4e-07  Score=63.44  Aligned_cols=46  Identities=24%  Similarity=0.508  Sum_probs=39.8

Q ss_pred             ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..|+||++-+++.  + .++ |||+|.+.||..|++.+.+||+|+.++..
T Consensus         2 ~~Cpi~~~~~~~P--v-~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP--V-ILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC--E-ECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4799999998874  3 356 99999999999999999999999998744

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9.7e-08  Score=67.60  Aligned_cols=51  Identities=33%  Similarity=0.763  Sum_probs=37.4

Q ss_pred             Ccccccccccccc--------cCcee-eeeCCCCCccChHhHHHHHhc---CCCCCCcCCCCc
Q 044271          310 NSSACPICLSEFL--------SQETI-RCIPECKHCFHAECIDEWLRL---NDKCPVCRNSAT  360 (369)
Q Consensus       310 ~~~~C~ICL~~~~--------~~~~~-~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~~~~  360 (369)
                      .+++|-||..+|.        .||.. .++..|.|.||..||.+|+..   +..||+||+.-.
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3569999999985        22311 233359999999999999965   455999998743

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.4e-07  Score=81.76  Aligned_cols=53  Identities=25%  Similarity=0.635  Sum_probs=43.5

Q ss_pred             CCCcccccccccccccCc-------eeeeeCCCCCccChHhHHHHH--hcCCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQE-------TIRCIPECKHCFHAECIDEWL--RLNDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~-------~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~Cr~~~~~  361 (369)
                      ..++..|+||-..+....       ..-.|. |+|+||+.||+.|.  -++.+||.||..++.
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            446789999998876655       556787 99999999999998  467899999886643

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.9e-07  Score=87.62  Aligned_cols=51  Identities=33%  Similarity=0.871  Sum_probs=40.0

Q ss_pred             cccccccccccccCce--------------eeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQET--------------IRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~--------------~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~  362 (369)
                      ..+|+||+.+...-.+              --..| |.|+||+.|+.+|+. .+..||+||.++.+.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPpl  636 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPPL  636 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCCC
Confidence            4799999998653221              12446 999999999999998 466999999998763

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=6.5e-07  Score=67.32  Aligned_cols=50  Identities=30%  Similarity=0.699  Sum_probs=39.4

Q ss_pred             Cccccccccccc-------------ccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271          310 NSSACPICLSEF-------------LSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA  359 (369)
Q Consensus       310 ~~~~C~ICL~~~-------------~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~  359 (369)
                      .-+.||||...+             ..++-......|+|.||-.||.+||+.+..||||.++-
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            458899997654             23344455557999999999999999999999998764

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.21  E-value=7.3e-07  Score=57.51  Aligned_cols=38  Identities=37%  Similarity=0.987  Sum_probs=28.6

Q ss_pred             ccccccccccCceeeeeCCCCCccChHhHHHHHhcC----CCCCCc
Q 044271          314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN----DKCPVC  355 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~----~~CP~C  355 (369)
                      |+||++-|++...   ++ |||.|...||..|.+..    ..||+|
T Consensus         1 CpiC~~~~~~Pv~---l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVS---LP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE----S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccc---cC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999887554   66 99999999999999763    469987

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.04  E-value=1.6e-06  Score=81.96  Aligned_cols=48  Identities=40%  Similarity=1.014  Sum_probs=40.8

Q ss_pred             cccccccccccccCc-eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ...|+||||.+.+.- .++... |+|.||..|+..|  ...+||+||....+
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~p  223 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQSP  223 (493)
T ss_pred             CCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcCc
Confidence            469999999998776 445555 9999999999999  89999999987664

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.03  E-value=3.8e-06  Score=80.42  Aligned_cols=49  Identities=33%  Similarity=0.670  Sum_probs=41.7

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ....|+||++.|...  + +++ |+|.|+..||..|+.....||+||..+...
T Consensus        25 ~~l~C~IC~d~~~~P--v-itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDVP--V-LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhCc--c-CCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            457999999998654  3 467 999999999999999888999999987543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.97  E-value=1.4e-06  Score=62.96  Aligned_cols=50  Identities=30%  Similarity=0.705  Sum_probs=24.1

Q ss_pred             cccccccccccccCc--eeeee--CCCCCccChHhHHHHHhc----C-------CCCCCcCCCCc
Q 044271          311 SSACPICLSEFLSQE--TIRCI--PECKHCFHAECIDEWLRL----N-------DKCPVCRNSAT  360 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~--~~~~l--~~C~H~fH~~Ci~~wl~~----~-------~~CP~Cr~~~~  360 (369)
                      +.+|.||.+...+.+  .....  +.|++.||..||..||+.    +       -.||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999999876333  22333  269999999999999963    1       13999999875

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.80  E-value=7.5e-06  Score=83.58  Aligned_cols=53  Identities=28%  Similarity=0.715  Sum_probs=40.4

Q ss_pred             CCCcccccccccccccCc---eeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQE---TIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~---~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~  360 (369)
                      -.+..+||||..-...-|   +-...+.|+|-||..|+-.|++.  +.+||+||.++.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            345689999988765222   22345569999999999999976  677999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.77  E-value=2e-05  Score=50.89  Aligned_cols=38  Identities=37%  Similarity=0.946  Sum_probs=22.1

Q ss_pred             ccccccccccCc-eeeeeCCCCCccChHhHHHHHhcC----CCCC
Q 044271          314 CPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLN----DKCP  353 (369)
Q Consensus       314 C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~----~~CP  353 (369)
                      |+||+| |.+.+ .-..|+ |||.|.++||+.|++..    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 75544 446688 99999999999999753    3476

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.1e-05  Score=75.04  Aligned_cols=46  Identities=30%  Similarity=0.871  Sum_probs=35.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc---CCCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL---NDKCPVCR  356 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr  356 (369)
                      ...|.||-+-+-....+.-+..|||+||..|+.+|+..   +..||+||
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            35899994444444455555569999999999999976   46799999

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1.5e-05  Score=70.79  Aligned_cols=51  Identities=31%  Similarity=0.770  Sum_probs=41.4

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHH-HHhcCCC-CCCcCCCCcCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDE-WLRLNDK-CPVCRNSATPVH  363 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~-wl~~~~~-CP~Cr~~~~~~~  363 (369)
                      ..+..|+||++......   .++ |||+|.-.||-. |=+++.- ||+||+-..+..
T Consensus       213 ~~d~kC~lC~e~~~~ps---~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVPS---CTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCcc---ccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            45789999999866543   366 999999999999 9877665 999999876653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=7.2e-05  Score=70.19  Aligned_cols=50  Identities=32%  Similarity=0.871  Sum_probs=39.0

Q ss_pred             CcccccccccccccC-ceeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCC
Q 044271          310 NSSACPICLSEFLSQ-ETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSA  359 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~  359 (369)
                      .+..|+|||+.|... +.....+.|+|.|..+||+.||-+  ...||+|....
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            467999999999754 444445569999999999999943  35599998753

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.49  E-value=9.1e-05  Score=68.24  Aligned_cols=52  Identities=21%  Similarity=0.577  Sum_probs=38.4

Q ss_pred             cccccccccc-cccCce-eeeeCCCCCccChHhHHHHH-hcCCCCCCcCCCCcCCC
Q 044271          311 SSACPICLSE-FLSQET-IRCIPECKHCFHAECIDEWL-RLNDKCPVCRNSATPVH  363 (369)
Q Consensus       311 ~~~C~ICL~~-~~~~~~-~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~Cr~~~~~~~  363 (369)
                      +..|+||+.+ |-..+. +-+.+ |||.|+..|++..+ .....||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            5689999997 444442 22234 99999999999955 55668999999876543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=9.3e-05  Score=71.68  Aligned_cols=47  Identities=34%  Similarity=0.748  Sum_probs=37.1

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~~~~  361 (369)
                      +..|+|||++-....  + +- |||+|+-.||-+++..     ...||+||..+..
T Consensus       186 ~~~CPICL~~~~~p~--~-t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPV--R-TN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccc--c-cc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            789999999854433  3 22 9999999999998843     5679999987765

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00013  Score=67.66  Aligned_cols=49  Identities=29%  Similarity=0.718  Sum_probs=39.8

Q ss_pred             CCcccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +...+|.|||.+-++   ..+|| |+|. .+..|.+.-.-+++.||+||+++.+
T Consensus       288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            457899999998444   55699 9986 5778999977789999999998754

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.33  E-value=0.00015  Score=52.93  Aligned_cols=49  Identities=20%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      +...|+|+.+-|.+.  |+ +| +||.|-+.+|..|+++ +.+||+++.++...
T Consensus         3 ~~f~CpIt~~lM~dP--Vi-~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDP--VI-LP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSE--EE-ET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCc--ee-CC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            457899999987774  33 67 9999999999999998 89999999987654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.21  E-value=7.7e-05  Score=75.07  Aligned_cols=51  Identities=29%  Similarity=0.544  Sum_probs=45.8

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      .....|++||..+.++......+ |+|.||..||+.|-+.-.+||+||.+..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence            44578999999999998887777 9999999999999999999999998753

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.00017  Score=67.46  Aligned_cols=45  Identities=36%  Similarity=0.789  Sum_probs=40.1

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN  357 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~  357 (369)
                      .+...|+||++.|.+.   .++| |+|.|...|+..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence            4568999999999998   6788 9999999999999886678999993

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00024  Score=66.88  Aligned_cols=52  Identities=27%  Similarity=0.818  Sum_probs=41.2

Q ss_pred             CCcccccccccccccCc----eeeeeCCCCCccChHhHHHHH--hc-----CCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWL--RL-----NDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl--~~-----~~~CP~Cr~~~~  360 (369)
                      ..+.+|.||+|...+..    .-+++|.|.|.|...||+.|-  ++     .+.||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            45789999999866554    234567899999999999998  44     477999998643

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.09  E-value=0.00026  Score=63.50  Aligned_cols=48  Identities=29%  Similarity=0.559  Sum_probs=39.9

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      -..|.||-+-+...-   .++ |||.|+.-||+..|..+..||+||.+....
T Consensus        25 ~lrC~IC~~~i~ip~---~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          25 MLRCRICDCRISIPC---ETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             HHHhhhhhheeecce---ecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            479999998876532   244 999999999999999999999999976443

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.00023  Score=65.76  Aligned_cols=58  Identities=34%  Similarity=0.689  Sum_probs=46.5

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCCCCCCCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPVHASSVNP  369 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~~  369 (369)
                      ..+..|+|||+=++...   ..++|.|-|+.+||..-++. ++.||.||+.+.+...-.++|
T Consensus        41 ~~~v~c~icl~llk~tm---ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp   99 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTM---TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDP   99 (381)
T ss_pred             hhhhccHHHHHHHHhhc---ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCc
Confidence            44789999999876644   35579999999999998854 788999999988776655554

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=96.73  E-value=0.00066  Score=62.32  Aligned_cols=48  Identities=31%  Similarity=0.704  Sum_probs=41.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      -..|.||.|=|...-   ++| |+|-|+.-||+..|..+..||+|+.+..+.
T Consensus        23 lLRC~IC~eyf~ip~---itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPM---ITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHhHHHHHhcCce---ecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence            468999999887644   366 999999999999999999999999987554

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00056  Score=56.14  Aligned_cols=32  Identities=28%  Similarity=0.714  Sum_probs=28.5

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChH
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAE  340 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~  340 (369)
                      +.+.-+|.|||||+..++++..|| |-.+||+.
T Consensus       174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~  205 (205)
T KOG0801|consen  174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ  205 (205)
T ss_pred             cccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence            445579999999999999999999 99999973

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=96.64  E-value=0.0005  Score=62.09  Aligned_cols=50  Identities=32%  Similarity=0.758  Sum_probs=42.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----------------------CCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----------------------NDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----------------------~~~CP~Cr~~~~~  361 (369)
                      .-.|.|||=-|.+++....++ |-|.||..|+..+|..                       ...||+||..|..
T Consensus       115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            468999999999999988898 9999999999988741                       3469999987643

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0005  Score=45.65  Aligned_cols=46  Identities=26%  Similarity=0.592  Sum_probs=31.4

Q ss_pred             cccccccccccccCceeeeeCCCCCcc-ChHhH-HHHHhcCCCCCCcCCCCc
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCF-HAECI-DEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~f-H~~Ci-~~wl~~~~~CP~Cr~~~~  360 (369)
                      +++|.||+|.=.  +.|..+  |||.- .-+|- +.|-..+..||+||+++.
T Consensus         7 ~dECTICye~pv--dsVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPV--DSVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcc--hHHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            489999999733  333333  99873 33454 445447889999999874

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0013  Score=59.57  Aligned_cols=50  Identities=24%  Similarity=0.452  Sum_probs=40.0

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      ....+|+||+......   ..|+ |+|.|.--||..-.+. ..+|++||.++.+.
T Consensus         5 ~~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    5 TKKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             ccCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            3457999999986655   3477 9999999999987755 55699999998654

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.55  E-value=0.00087  Score=53.93  Aligned_cols=36  Identities=22%  Similarity=0.609  Sum_probs=30.7

Q ss_pred             cccccccccccccCceeeeeCCCC------CccChHhHHHHHh
Q 044271          311 SSACPICLSEFLSQETIRCIPECK------HCFHAECIDEWLR  347 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~------H~fH~~Ci~~wl~  347 (369)
                      ..+|+||++...+.+.|..++ |+      |.||.+|+..|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence            579999999999977777777 64      9999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.47  E-value=0.0017  Score=44.67  Aligned_cols=42  Identities=33%  Similarity=0.736  Sum_probs=28.4

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--CCCCCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPV  354 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~  354 (369)
                      ....|+|.+..|++  .|+... |+|.|-++.|.+|+++  ...||+
T Consensus        10 ~~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence            35799999998764  677666 9999999999999944  456998

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.46  E-value=0.00072  Score=46.96  Aligned_cols=46  Identities=28%  Similarity=0.696  Sum_probs=22.8

Q ss_pred             ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ..|++|.+-+++.-  - +..|.|+|...||..-+.  ..||+|+.+.-..
T Consensus         8 LrCs~C~~~l~~pv--~-l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q   53 (65)
T PF14835_consen    8 LRCSICFDILKEPV--C-LGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ   53 (65)
T ss_dssp             TS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred             cCCcHHHHHhcCCc--e-eccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence            57999999866543  3 334999999999988543  4599999887443

>PHA02862 5L protein; Provisional

Probab=96.40  E-value=0.0024  Score=51.63  Aligned_cols=45  Identities=22%  Similarity=0.600  Sum_probs=34.2

Q ss_pred             cccccccccccccCceeeeeCCC-----CCccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271          311 SSACPICLSEFLSQETIRCIPEC-----KHCFHAECIDEWLRL--NDKCPVCRNSAT  360 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C-----~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~  360 (369)
                      ++.|-||+++-++.  +  -| |     ....|.+|+.+|++.  +..||+|+.+..
T Consensus         2 ~diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            46899999985433  2  34 5     367899999999964  567999998753

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0036  Score=54.33  Aligned_cols=54  Identities=28%  Similarity=0.640  Sum_probs=45.9

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCCcCCCCcCCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPVCRNSATPVHA  364 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~Cr~~~~~~~~  364 (369)
                      +....|..|--.+..+|.+|..  |=|.||-+|++.|-..        ...||-|..++.+...
T Consensus        48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            3457999999999999999966  9999999999999853        4569999999987643

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.17  E-value=0.0036  Score=41.10  Aligned_cols=45  Identities=29%  Similarity=0.685  Sum_probs=22.5

Q ss_pred             ccccccccccCceeeeeC-CCCCccChHhHHHHHh-cCCCCCCcCCCC
Q 044271          314 CPICLSEFLSQETIRCIP-ECKHCFHAECIDEWLR-LNDKCPVCRNSA  359 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~  359 (369)
                      |++|.+++...+ ....| +|++.+...|...-++ .+..||-||.+.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999993333 34455 4789999999888775 578899999864

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.16  E-value=0.0036  Score=67.13  Aligned_cols=64  Identities=28%  Similarity=0.563  Sum_probs=48.1

Q ss_pred             ccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC----------CCCCCcCCCCc
Q 044271          295 FQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN----------DKCPVCRNSAT  360 (369)
Q Consensus       295 ~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~----------~~CP~Cr~~~~  360 (369)
                      +|-+..+++.. ..+.++.|-||.-|--.....+.|. |+|+||-.|.+.-|+.+          .+||+|+.++.
T Consensus      3471 LPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3471 LPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             ccccccChhhh-hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            44444333222 2566899999999988888888897 99999999999877542          36999998763

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.95  E-value=0.0055  Score=40.40  Aligned_cols=40  Identities=38%  Similarity=1.017  Sum_probs=27.3

Q ss_pred             ccccccccccCceeeeeCCCC-----CccChHhHHHHHh--cCCCCCCc
Q 044271          314 CPICLSEFLSQETIRCIPECK-----HCFHAECIDEWLR--LNDKCPVC  355 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~--~~~~CP~C  355 (369)
                      |-||+++-.+.+.+ +.| |+     -..|..|+..|++  .+.+|++|
T Consensus         1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            67999997777633 355 62     4779999999996  45779987

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.94  E-value=0.0074  Score=49.91  Aligned_cols=49  Identities=29%  Similarity=0.712  Sum_probs=35.3

Q ss_pred             CCCcccccccccccccCceeeeeC-CCCC---ccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIRCIP-ECKH---CFHAECIDEWLRL--NDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~-~C~H---~fH~~Ci~~wl~~--~~~CP~Cr~~~~  360 (369)
                      ...+..|-||.++..  +..  .| .|..   ..|.+|++.|+..  ..+|++|+++..
T Consensus         5 s~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          5 SLMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            345789999999853  232  35 1333   6699999999965  566999998753

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.89  E-value=0.0029  Score=59.35  Aligned_cols=51  Identities=24%  Similarity=0.677  Sum_probs=40.2

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--CCCCCCcCCCCcCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRNSATPVH  363 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~Cr~~~~~~~  363 (369)
                      ..-..|-||-|.-   ..|++-| |||..+..|+..|-..  ...||.||.++-..+
T Consensus       367 sTFeLCKICaend---KdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  367 STFELCKICAEND---KDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             chHHHHHHhhccC---CCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            3457999998863   3477788 9999999999999633  578999999875543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.86  E-value=0.0028  Score=59.37  Aligned_cols=47  Identities=32%  Similarity=0.793  Sum_probs=39.9

Q ss_pred             CCcccccccccccccCc-eeeeeCCCCCccChHhHHHHHhcC--CCCCCcC
Q 044271          309 PNSSACPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLN--DKCPVCR  356 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr  356 (369)
                      +.+..|-.|-|.+..++ .+..|| |.|+||..|+...|+++  .+||-||
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr  412 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR  412 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence            44679999999987664 567788 99999999999999765  6799999

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.10  E-value=0.017  Score=59.41  Aligned_cols=51  Identities=27%  Similarity=0.730  Sum_probs=42.7

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-------CCCCCCcCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-------NDKCPVCRNS  358 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-------~~~CP~Cr~~  358 (369)
                      .....+|.||.+.++..+.+....-|=|+||-.||..|.+.       ..+||-|+..
T Consensus       188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            34457999999999999988777778899999999999964       3569999854

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=95.03  E-value=0.024  Score=38.10  Aligned_cols=35  Identities=29%  Similarity=0.801  Sum_probs=31.5

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHH
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDE  344 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~  344 (369)
                      ....|.+|-++|++++.+.+.|.|+-.+|++|.+.
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            45789999999999999999999999999999765

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=94.92  E-value=0.014  Score=56.71  Aligned_cols=53  Identities=36%  Similarity=0.704  Sum_probs=44.0

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      ..+..|+||...+.+.-..  .. |||.|...|+..|+..+..||.|+.++..+..
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             cccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchhhc
Confidence            4468999999997776543  34 99999999999999999999999998766543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=94.82  E-value=0.018  Score=38.72  Aligned_cols=45  Identities=20%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             cccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271          313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH  363 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~  363 (369)
                      .|-.|..   .+.+...+| |+|.....|.+.+  +-+-||+|-++++.+.
T Consensus         9 ~~~~~~~---~~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    9 PCVFCGF---VGTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eEEEccc---ccccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence            4444443   344456687 9999999999985  7788999999987764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=0.021  Score=53.37  Aligned_cols=46  Identities=33%  Similarity=0.669  Sum_probs=34.1

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      ....+.|.||+++.++   ...+| |||.=.  |..- .+....||+||+.+.
T Consensus       302 ~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~c-s~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLC-SKHLPQCPVCRQRIR  347 (355)
T ss_pred             cCCCCceEEecCCccc---eeeec-CCcEEE--chHH-HhhCCCCchhHHHHH
Confidence            4456899999999776   55688 999943  4443 455667999998764

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=0.0033  Score=58.93  Aligned_cols=52  Identities=25%  Similarity=0.580  Sum_probs=46.2

Q ss_pred             cccccccccccccC-ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271          311 SSACPICLSEFLSQ-ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH  363 (369)
Q Consensus       311 ~~~C~ICL~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~  363 (369)
                      ...|+||-+.|+.. +++..+. |||++|.+|+..||.....||.||+++.-..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            35899999999988 7888887 9999999999999999999999999886543

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.03  E-value=0.038  Score=35.61  Aligned_cols=41  Identities=24%  Similarity=0.686  Sum_probs=24.1

Q ss_pred             ccccccccccCceeeeeCCCCCccChHhHHHHHhcCC--CCCCc
Q 044271          314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND--KCPVC  355 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~C  355 (369)
                      |.+|-+-...|....... |+--+|..|++.+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence            667777776766655443 888999999999997765  79987

; PDB: 3NW0_A 2CT0_A.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.00  E-value=0.023  Score=44.50  Aligned_cols=33  Identities=27%  Similarity=0.695  Sum_probs=27.3

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHH
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECID  343 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~  343 (369)
                      ..+..|++|-..+.. ......| |||+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            346789999999887 4566678 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.037  Score=53.46  Aligned_cols=49  Identities=29%  Similarity=0.735  Sum_probs=40.3

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..+.+|.||+.-+...-   .+| |||.|...||+.-+.+..-||+||.++..
T Consensus        82 ~sef~c~vc~~~l~~pv---~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPV---VTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCc---ccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            45789999977765533   357 99999999999988878889999998864

>PHA03096 p28-like protein; Provisional

Probab=93.75  E-value=0.033  Score=51.42  Aligned_cols=46  Identities=28%  Similarity=0.552  Sum_probs=35.0

Q ss_pred             ccccccccccccCc----eeeeeCCCCCccChHhHHHHHhc---CCCCCCcCC
Q 044271          312 SACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRL---NDKCPVCRN  357 (369)
Q Consensus       312 ~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~Cr~  357 (369)
                      .+|.||+|......    .-..|+.|.|.|...|++.|...   ...||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            68999999977643    33578889999999999999854   344555554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.62  E-value=0.028  Score=57.56  Aligned_cols=47  Identities=23%  Similarity=0.627  Sum_probs=36.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~  361 (369)
                      -..|+.|-...++.-   +. +|+|+|+..|+..-+. ++..||.|....-+
T Consensus       643 ~LkCs~Cn~R~Kd~v---I~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAV---IT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             ceeCCCccCchhhHH---HH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            368999997765532   23 3999999999999995 57789999886544

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.14  E-value=0.09  Score=46.54  Aligned_cols=52  Identities=15%  Similarity=0.349  Sum_probs=47.2

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ....|+||.+.+.....+..|.+|||+|..+|++..+++...||+|-.++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence            4579999999999999999999999999999999999999999999777643

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=0.18  Score=45.49  Aligned_cols=51  Identities=24%  Similarity=0.559  Sum_probs=39.5

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~  361 (369)
                      ...+.+|++|-+.  .-.+....+ |+|+|+--||..=+...  -+||.|-.+..+
T Consensus       236 ~t~~~~C~~Cg~~--PtiP~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  236 GTSDTECPVCGEP--PTIPHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             ccCCceeeccCCC--CCCCeeecc-ccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            4457899999987  333445566 99999999999977654  679999887763

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=92.14  E-value=0.12  Score=47.78  Aligned_cols=48  Identities=23%  Similarity=0.560  Sum_probs=37.7

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS  358 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~  358 (369)
                      ..+...|+||+..-+..-.+. .  -|-+|+-.|+-+.+..+..||+=-.+
T Consensus       297 ~~~~~~CpvClk~r~Nptvl~-v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPTVLE-V--SGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             CCccccChhHHhccCCCceEE-e--cceEEeHHHHHHHHHhcCCCCccCCc
Confidence            456789999999866554432 2  58999999999999999999975444

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.04  E-value=0.21  Score=46.48  Aligned_cols=51  Identities=24%  Similarity=0.569  Sum_probs=37.3

Q ss_pred             CCCCcccccccccccccCceeeeeCCCCCccChHhHHHH--HhcCCCCCCcCCCCcC
Q 044271          307 PGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW--LRLNDKCPVCRNSATP  361 (369)
Q Consensus       307 ~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w--l~~~~~CP~Cr~~~~~  361 (369)
                      ..++...|-||-+...   -...+| |+|..+..|--..  |-..+.||+||.+-+.
T Consensus        57 tDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          57 TDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             cccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence            3556789999988643   345677 9999888886542  3457889999997443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=92.03  E-value=0.063  Score=45.85  Aligned_cols=45  Identities=27%  Similarity=0.594  Sum_probs=37.9

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA  359 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~  359 (369)
                      ...|.||-++|+..-.   .. |||.|+..|...=+++...|-+|-...
T Consensus       196 PF~C~iCKkdy~spvv---t~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESPVV---TE-CGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccchhh---hh-cchhHHHHHHHHHhccCCcceecchhh
Confidence            4699999999987532   33 999999999999999999999997653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=91.84  E-value=0.077  Score=51.94  Aligned_cols=54  Identities=24%  Similarity=0.495  Sum_probs=40.6

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCCCcCCCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNSATPVHAS  365 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~~~~~~~~  365 (369)
                      .....+|-+|-++-++--.   .. |.|.|++.||..++..     +-+||+|...|....++
T Consensus       533 nk~~~~C~lc~d~aed~i~---s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse  591 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDYIE---SS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE  591 (791)
T ss_pred             ccCceeecccCChhhhhHh---hh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence            3456799999998555333   44 9999999999888853     57799999887655433

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.63  E-value=0.12  Score=43.39  Aligned_cols=50  Identities=34%  Similarity=0.735  Sum_probs=33.1

Q ss_pred             ccccccccccccCc----eeeeeCCCCCccChHhHHHHHhcC-----------CCCCCcCCCCcCC
Q 044271          312 SACPICLSEFLSQE----TIRCIPECKHCFHAECIDEWLRLN-----------DKCPVCRNSATPV  362 (369)
Q Consensus       312 ~~C~ICL~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~~-----------~~CP~Cr~~~~~~  362 (369)
                      -.|.||..---+|.    ..-... ||..||.-|+..||+.-           ..||.|..++.-.
T Consensus       166 ~~cgicyayqldGTipDqtCdN~q-CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  166 GACGICYAYQLDGTIPDQTCDNIQ-CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             hcccceeeeecCCccccccccccc-cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            35666664322221    222333 99999999999999641           2499999987543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.29  E-value=0.12  Score=47.30  Aligned_cols=46  Identities=26%  Similarity=0.676  Sum_probs=38.7

Q ss_pred             ccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCC
Q 044271          312 SACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRN  357 (369)
Q Consensus       312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~  357 (369)
                      ..|+||.+.+-.........+|+|.-|..|++.....+-+||+|..
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3599999998877755433349999999999999988899999987

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.13  E-value=0.11  Score=49.39  Aligned_cols=46  Identities=28%  Similarity=0.737  Sum_probs=37.8

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPVCRN  357 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~Cr~  357 (369)
                      -..|.||.++..-......+| |+|+|.+.|+..++..        .-.||-++-
T Consensus       184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            469999999977778889999 9999999999999854        235876544

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.87  E-value=0.25  Score=46.07  Aligned_cols=52  Identities=27%  Similarity=0.625  Sum_probs=41.5

Q ss_pred             CCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          305 RLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       305 ~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      ..+..+++.|+||...   ...-...| |+|.=+..||.+-|...+.|=.|+..+.
T Consensus       416 ~lp~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  416 DLPDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCCCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence            4446678999999875   22223466 9999999999999999999999998654

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=89.40  E-value=0.11  Score=42.86  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHHHhhhhceecccccc
Q 044271          225 GGSNGGLQVFRILALSIAIPALICASAIGICACCTDRSR  263 (369)
Q Consensus       225 ~~~~~~~~~~~ii~l~i~~~~l~~~~~~~~~~~~~~R~~  263 (369)
                      +.+.+...+++.+++++++++++.++++++++|+++|+.
T Consensus        42 GlS~knknIVIGvVVGVGg~ill~il~lvf~~c~r~kkt   80 (154)
T PF04478_consen   42 GLSSKNKNIVIGVVVGVGGPILLGILALVFIFCIRRKKT   80 (154)
T ss_pred             CCCcCCccEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence            445555566666677777766666555555555444443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.03  E-value=0.18  Score=52.26  Aligned_cols=45  Identities=27%  Similarity=0.610  Sum_probs=34.5

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ...|..|--..+...  ..-. |+|.||.+|+.   .+...||-|+.++..
T Consensus       840 ~skCs~C~~~LdlP~--VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~~~  884 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPF--VHFL-CGHSYHQHCLE---DKEDKCPKCLPELRG  884 (933)
T ss_pred             eeeecccCCccccce--eeee-cccHHHHHhhc---cCcccCCccchhhhh
Confidence            478999988766543  3444 99999999999   567789999986543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=88.92  E-value=0.46  Score=43.59  Aligned_cols=53  Identities=25%  Similarity=0.546  Sum_probs=42.9

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ......|+|...+|........+..|||+|-..+|..- +....||+|-.+...
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE  162 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence            35568999999999777677777669999999999996 346679999887653

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=88.52  E-value=0.11  Score=48.13  Aligned_cols=48  Identities=29%  Similarity=0.663  Sum_probs=40.3

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      ....|.+|-.=+.+...+.   +|-|-|++.||-..|+....||.|...+-
T Consensus        14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            4578999988777776643   59999999999999999999999987653

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=88.39  E-value=0.49  Score=29.25  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHhhhhceecccccccc
Q 044271          237 LALSIAIPALICASAIGICACCTDRSRLG  265 (369)
Q Consensus       237 i~l~i~~~~l~~~~~~~~~~~~~~R~~~~  265 (369)
                      ++.++.+.+.++++.++.|.|+.+|.+++
T Consensus         8 IIv~V~vg~~iiii~~~~YaCcykk~~~~   36 (38)
T PF02439_consen    8 IIVAVVVGMAIIIICMFYYACCYKKHRRQ   36 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            33444444555555555566665555543

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=88.18  E-value=1.1  Score=35.68  Aligned_cols=22  Identities=14%  Similarity=0.086  Sum_probs=16.0

Q ss_pred             CeeecccCCCcceEeecCCCCCC
Q 044271          204 QICGFKSRNSQEIGCFNNSKPGG  226 (369)
Q Consensus       204 G~Cg~~~~~~~~~~C~~~~~~~~  226 (369)
                      |.|.|-.+. .+..|.|..+-.+
T Consensus        56 G~C~yI~dl-~~~~CrC~~GYtG   77 (139)
T PHA03099         56 GDCIHARDI-DGMYCRCSHGYTG   77 (139)
T ss_pred             CEEEeeccC-CCceeECCCCccc
Confidence            589988654 4899999775443

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.81  E-value=0.26  Score=44.95  Aligned_cols=46  Identities=26%  Similarity=0.520  Sum_probs=38.7

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      .+.|-||...|...-.   .. |+|.|...|...=+++...|++|.+..-
T Consensus       241 Pf~c~icr~~f~~pVv---t~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVV---TK-CGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccchh---hc-CCceeehhhhccccccCCcceecccccc
Confidence            4689999999887543   33 9999999999999999999999987643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.99  E-value=0.47  Score=48.65  Aligned_cols=22  Identities=45%  Similarity=1.115  Sum_probs=20.9

Q ss_pred             CCCccChHhHHHHHhcCCCCCC
Q 044271          333 CKHCFHAECIDEWLRLNDKCPV  354 (369)
Q Consensus       333 C~H~fH~~Ci~~wl~~~~~CP~  354 (369)
                      |+|+-|.+|...|++....||.
T Consensus      1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             ccccccHHHHHHHHhcCCcCCC
Confidence            9999999999999999999983

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.71  E-value=0.45  Score=30.95  Aligned_cols=29  Identities=28%  Similarity=0.818  Sum_probs=21.9

Q ss_pred             C-CCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          333 C-KHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       333 C-~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      | .|.....|+...|.....||+|..++..
T Consensus        18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            7 6999999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.94  E-value=1  Score=41.18  Aligned_cols=46  Identities=35%  Similarity=0.761  Sum_probs=33.9

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCC-CC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRN-SA  359 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~-~~  359 (369)
                      ...|+.|-.-...  .++. |.|+|-|.++||..-|. ....||.|.+ ++
T Consensus       274 ~LkCplc~~Llrn--p~kT-~cC~~~fc~eci~~al~dsDf~CpnC~rkdv  321 (427)
T COG5222         274 SLKCPLCHCLLRN--PMKT-PCCGHTFCDECIGTALLDSDFKCPNCSRKDV  321 (427)
T ss_pred             cccCcchhhhhhC--cccC-ccccchHHHHHHhhhhhhccccCCCcccccc
Confidence            3789888765443  3343 67999999999998775 5788999944 44

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.83  E-value=0.79  Score=42.81  Aligned_cols=48  Identities=27%  Similarity=0.670  Sum_probs=38.1

Q ss_pred             cccccccccccccCcee---eeeCCCCCccChHhHHHHHhc-CCCCCCcCCCC
Q 044271          311 SSACPICLSEFLSQETI---RCIPECKHCFHAECIDEWLRL-NDKCPVCRNSA  359 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~---~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~  359 (369)
                      -.+|-||-++|..++..   |.|. |||.|...|+..-+.. ...||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            35899999999877433   5565 9999999999987654 45599999984

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.26  E-value=0.57  Score=49.07  Aligned_cols=37  Identities=27%  Similarity=0.716  Sum_probs=28.7

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHH
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL  346 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl  346 (369)
                      -+.++.|.+|.-.+... .-.+-| |||.||++|+..-.
T Consensus       814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            34578999998887655 334466 99999999998766

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.47  E-value=0.55  Score=42.00  Aligned_cols=54  Identities=22%  Similarity=0.584  Sum_probs=37.9

Q ss_pred             CCCcccccccccccccCcee-eeeCCC-----CCccChHhHHHHHhcCC--------CCCCcCCCCcCC
Q 044271          308 GPNSSACPICLSEFLSQETI-RCIPEC-----KHCFHAECIDEWLRLND--------KCPVCRNSATPV  362 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~-~~l~~C-----~H~fH~~Ci~~wl~~~~--------~CP~Cr~~~~~~  362 (369)
                      .+.+..|-||++.=++...- -+-| |     .|=.|..|+..|+.++.        +||-|+++...+
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv   84 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV   84 (293)
T ss_pred             cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence            34567999999875554322 2334 5     48899999999994422        499999986544

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=82.34  E-value=1.7  Score=36.18  Aligned_cols=52  Identities=25%  Similarity=0.703  Sum_probs=33.0

Q ss_pred             cccccccccccccCcee---------eeeCCCCCcc-ChHhHHHHHhc-------------------------------C
Q 044271          311 SSACPICLSEFLSQETI---------RCIPECKHCF-HAECIDEWLRL-------------------------------N  349 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~---------~~l~~C~H~f-H~~Ci~~wl~~-------------------------------~  349 (369)
                      +..|+||||-=...--+         |--- |+..+ |..|+++.-+.                               +
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE   80 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence            56899999974333221         1111 55444 66899997641                               2


Q ss_pred             CCCCCcCCCCcCCC
Q 044271          350 DKCPVCRNSATPVH  363 (369)
Q Consensus       350 ~~CP~Cr~~~~~~~  363 (369)
                      ..||+||.++..+.
T Consensus        81 L~CPLCRG~V~GWt   94 (162)
T PF07800_consen   81 LACPLCRGEVKGWT   94 (162)
T ss_pred             ccCccccCceeceE
Confidence            35999999987663

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=82.29  E-value=0.79  Score=42.63  Aligned_cols=52  Identities=23%  Similarity=0.557  Sum_probs=36.0

Q ss_pred             CCCcccccccccccccCceee-eeCCCCCccChHhHHHHHh-cCCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIR-CIPECKHCFHAECIDEWLR-LNDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~-~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~  360 (369)
                      +++++.|+.|+|++...|+-- -.| ||-..+.-|...--+ -+.+||.||+-..
T Consensus        11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            345677999999998877532 233 776666677666332 2678999998654

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=81.78  E-value=0.72  Score=43.41  Aligned_cols=51  Identities=25%  Similarity=0.627  Sum_probs=37.8

Q ss_pred             cccccccccccccCce-eeeeCCC-----CCccChHhHHHHHh--cCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQET-IRCIPEC-----KHCFHAECIDEWLR--LNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~-~~~l~~C-----~H~fH~~Ci~~wl~--~~~~CP~Cr~~~~~~  362 (369)
                      +..|-||.++..+... .-..| |     .+..|+.|++.|+.  .+..|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            5789999998765542 23345 6     27779999999997  567799998865443

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=81.69  E-value=0.59  Score=42.92  Aligned_cols=33  Identities=36%  Similarity=0.787  Sum_probs=26.2

Q ss_pred             CceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCC
Q 044271          324 QETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSA  359 (369)
Q Consensus       324 ~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~  359 (369)
                      .--.|.+| |+|+|+.+|.+.  ...+.||+|-..+
T Consensus       101 ~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen  101 AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            33457888 999999999876  4578999997654

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.07  E-value=0.98  Score=46.10  Aligned_cols=49  Identities=31%  Similarity=0.823  Sum_probs=39.5

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      .+..++|+||++++    ..+..+ |.   |..|+..|+..+..||+|+........
T Consensus       476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence            34468999999998    455566 77   999999999999999999887655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		9e-08
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		1e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-06
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		2e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		1e-04

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           C +C+ +F S++ +R +P C H FHA+C+D+WL+ N  CP+CR  + P
Sbjct: 26  CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C +CL+E    E  R +P C H FHAEC+D WL  +  CP+CR
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360
           CP+C  ++   E++R +P C H FH  CI  WL  +D CPVCR S T
Sbjct: 18  CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C ICLS     E +R +P C H FH  C+D+WL  N KCP+CR
Sbjct: 17  CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 289 ESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL 348
           + +I++  ++++ E     G     CPIC SE++  +    +P C H FH  C+  WL+ 
Sbjct: 19  KESIDALPEILVTEDHGAVG-QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76
Query: 349 NDKCPVCR 356
           +  CPVCR
Sbjct: 77  SGTCPVCR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-19
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-19
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-18
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	5e-17
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-16
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-15
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-15
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-15
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-11
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-10
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	5e-10
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	7e-10
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	9e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	4e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	8e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	4e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	7e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	7e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	6e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	6e-04
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	6e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 284 TVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECID 343
                + +I++  ++++ E     G     CPIC SE++  +    +P C H FH  C+ 
Sbjct: 14  NPPASKESIDALPEILVTEDHGAVG-QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVS 71

Query: 344 EWLRLNDKCPVCRNSATP 361
            WL+ +  CPVCR    P
Sbjct: 72  IWLQKSGTCPVCRCMFPP 89

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
           C +CL+E    E  R +P C H FHAEC+D WL  +  CP+CR +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 303 SKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           +        + C +C+ +F S++ +R +P C H FHA+C+D+WL+ N  CP+CR  + P
Sbjct: 15  NPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 73.9 bits (182), Expect = 5e-17
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 304 KRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           +         C ICLS     E +R +P C H FH  C+D+WL  N KCP+CR     
Sbjct: 7   EGTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASSVNP 369
           CP+C  ++   E++R +P C H FH  CI  WL  +D CPVCR S T  + ++  P
Sbjct: 18  CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPP 72

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT 360
            SS CPICL +  +   +  +  C H  H  C +E L+   +CP+C   ++
Sbjct: 4   GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366
           C +CL +F  ++ +   P CKH FH +C+ +WL +   CP+C      +   S
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C  C +E   ++ +    EC H FH  C+  W++ N++CP+C+
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS 366
           C IC+           +P C H F  +CID+W   +  CP+CR   T  + SS
Sbjct: 18  CCICMDGR----ADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           +  CPICL +         +P C H F   CI  W+R N  CP+C+
Sbjct: 5   AERCPICLEDP--SNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 314 CPICLSEF---LSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           CPIC+  +   +    +    EC H F ++C+ + L+  + CP CR     
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C    +   S+E       C H FH  CI  WL+    CP+  
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 314 CPICLSEF---LSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           CPIC+  +   +    +    EC H F ++C+ + L+  + CP CR     
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 55.2 bits (132), Expect = 7e-10
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C    +   S+E       C H FH  CI  WL+    CP+  
Sbjct: 65  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 53.7 bits (129), Expect = 9e-10
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 310 NSSACPICLSEF---LSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
            + +CPIC+  +   +    +    EC H F ++C+ + L+  + CP CR     
Sbjct: 9   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATP 361
           C IC+ +       R  P C       CI  WL     +CP CR     
Sbjct: 25  CFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C +C   +    T   I EC H F   CI  +L  +  CP+C 
Sbjct: 18  CVLCG-GYFIDATT--IIECLHSFCKTCIVRYLETSKYCPICD 57

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C IC    +   TI    EC H F   CI      +++CP C 
Sbjct: 18  CSICKGYLIDATTI---TECLHTFCKSCIVRHFYYSNRCPKCN 57

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.3 bits (115), Expect = 8e-08
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
            C IC   F        + +C+H F   C  E  R   +C +C 
Sbjct: 17  RCFICRQAF----QNPVVTKCRHYFCESCALEHFRATPRCYICD 56

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 19/80 (23%)

Query: 296 QKLVLGESKRLPGPNSSACPICLSEF--------------LSQETIRCIPECKHCFHAEC 341
           ++++   ++ L       C IC+ +               L    +  + +C H FH  C
Sbjct: 10  EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC 69

Query: 342 IDEWLRLNDK-----CPVCR 356
           +       +K     CP C+
Sbjct: 70  LLAMYCNGNKDGSLQCPSCK 89

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           C IC  E+ +   I  IP+C H + + CI ++L    +CP C  + T 
Sbjct: 25  CGICF-EYFNIAMI--IPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRN 357
           C IC S  +      C   C    H  C+ ++ +     +CP C +
Sbjct: 18  CNICHSLLIQ--GQSC-ETCGIRMHLPCVAKYFQSNAEPRCPHCND 60

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 303 SKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
               P      C ICL              CKH F   C+     L  +C +CR  
Sbjct: 7   GNTAPSLTVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQE 58

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 15/59 (25%)

Query: 314 CPICLSEFLSQET---IRCIPE-CKHCFHAECIDEWLR-----------LNDKCPVCRN 357
           C IC +  L       + C    C    HA C++EW +              +CP C+ 
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 314 CPICLSEFLSQETIRCIP---ECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           CPIC+  +        +    EC H F ++C+ + L+  + CP CR     
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH 363
           C    SE +    +    EC H F ++C+ + L+  + CP CR       
Sbjct: 78  CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
           C IC   F+   T+     C H F + CI+EW++   +CP+CR  
Sbjct: 67  CIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKD 107

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK-CPVCRNSATPVHASSVN 368
               C IC       + ++  P C H     C+  W     + CP CR          V+
Sbjct: 331 TFQLCKICAEND---KDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386

Query: 369 P 369
           P
Sbjct: 387 P 387

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--NDKCPVCRN 357
           C IC S  +  +   C   C    H  C+ ++ +     +CP C +
Sbjct: 183 CNICHSLLI--QGQSC-ETCGIRMHLPCVAKYFQSNAEPRCPHCND 225

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP 361
           CPICL     + T+    EC H F A+CI   LR  N +CP CR     
Sbjct: 57  CPICLDML--KNTM-TTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           C  C +         C+  C+H F + C+ +   +   CPVC   A  
Sbjct: 25  CSRCTNIL---REPVCLGGCEHIFCSNCVSDC--IGTGCPVCYTPAWI 67

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK--CPV--CRNSATP 361
           CPI    +  +  +    +C H F  + I  +L+      CP   C    + 
Sbjct: 184 CPITCKPY--EAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK--CPVCRNSATP 361
           C IC       + +  IP C + +  ECI   L  +D+  CP C  +   
Sbjct: 16  CLICKDIM--TDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATPVHASSVN 368
           C  C        T      C+H    +C+D   R     CP CR      +A  VN
Sbjct: 55  CICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVN 106

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCR 356
           +   CP+C+      +       C +     C        N  CP CR
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDK--CPVCRNSATP 361
           C IC            IP C + +  ECI   L  +D+  CP C  +   
Sbjct: 18  CLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.69
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.63
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.56
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.54
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.53
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.52
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.51
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.43
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.41
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.39
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.38
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.37
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.37
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.35
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.33
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.28
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.27
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.26
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.24
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.24
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.19
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.13
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.11
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.07
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.04
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.03
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.01
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.01
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.0
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.99
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.99
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.97
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.96
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.96
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.95
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.9
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.82
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.81
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.8
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.8
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.77
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.77
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.77
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.72
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.72
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.71
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.69
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.67
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.66
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.63
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.54
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.51
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.5
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.49
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.44
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.43
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.35
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.32
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.31
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.3
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.14
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.12
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.01
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.99
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.82
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.78
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.76
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.66
3nw0_A	238	Non-structural maintenance of chromosomes element	97.54
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.24
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.27
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	88.36
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	85.29
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	85.12
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	84.36
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	84.12
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	84.04
1we9_A	64	PHD finger family protein; structural genomics, PH	83.85
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.51
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	82.45

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.69  E-value=6.2e-17  Score=123.26  Aligned_cols=82  Identities=27%  Similarity=0.681  Sum_probs=70.6

Q ss_pred             CCCcccCCCCHHHHhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCC
Q 044271          279 QPPIMTVGLDESTIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS  358 (369)
Q Consensus       279 ~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~  358 (369)
                      .......|++++.++.+|.+.+..... ....+..|+|||++|..++.++.+| |+|.||..||+.|++.+.+||+||.+
T Consensus         9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~   86 (91)
T 2l0b_A            9 SHMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM   86 (91)
T ss_dssp             CCSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred             CCCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence            345566799999999999998876432 2456789999999999999999999 99999999999999999999999998


Q ss_pred             CcCC
Q 044271          359 ATPV  362 (369)
Q Consensus       359 ~~~~  362 (369)
                      +.+.
T Consensus        87 ~~~~   90 (91)
T 2l0b_A           87 FPPP   90 (91)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            8653

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.1e-16  Score=117.28  Aligned_cols=69  Identities=30%  Similarity=0.866  Sum_probs=58.7

Q ss_pred             HHhhccceeeccCCCCCCCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          291 TIESFQKLVLGESKRLPGPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       291 ~~~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .++.+|.+.+....  ...++.+|+||+++|..++.++.+| |+|.||..||+.|++.+.+||+||+++.+.
T Consensus         5 ~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            34567777776533  2356789999999999999999999 999999999999999999999999998765

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.56  E-value=1.7e-15  Score=103.91  Aligned_cols=52  Identities=40%  Similarity=0.995  Sum_probs=47.7

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      +++.+|+||++++.+++.+..++.|+|.||..||++|++.+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3467999999999999998888779999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=6.4e-15  Score=106.01  Aligned_cols=56  Identities=39%  Similarity=0.887  Sum_probs=50.4

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      ...+..|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||..+.....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            445689999999999999999999 99999999999999999999999999877643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.53  E-value=7.9e-15  Score=108.19  Aligned_cols=58  Identities=38%  Similarity=0.917  Sum_probs=51.5

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS  366 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~  366 (369)
                      ...+.+|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||..+.......
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence            345689999999999999999998 9999999999999999999999999987765544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=106.25  Aligned_cols=55  Identities=29%  Similarity=0.855  Sum_probs=49.6

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      ..+..|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||+++.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            45689999999999999999999 99999999999999999999999999865543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=6.6e-15  Score=109.39  Aligned_cols=53  Identities=26%  Similarity=0.819  Sum_probs=43.6

Q ss_pred             Cccccccccccccc-----------CceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLS-----------QETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~-----------~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      +++.|+||+++|.+           ++.++.++.|+|.||.+||++||+.+.+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            45678888887754           565667767999999999999999999999999987643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.43  E-value=7.4e-14  Score=95.59  Aligned_cols=51  Identities=33%  Similarity=0.893  Sum_probs=44.1

Q ss_pred             CCcccccccccccccCc-eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQE-TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      ..+.+|+||++++.+++ .++.++ |+|.||..||+.|++.+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            34679999999997654 466677 9999999999999999999999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.41  E-value=7.8e-14  Score=108.53  Aligned_cols=51  Identities=27%  Similarity=0.643  Sum_probs=43.6

Q ss_pred             CCcccccccccccccCc---------------eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQE---------------TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      ..++.|+||+++|.+.-               .++.++ |+|.||..||+.||+.+.+||+||++..
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            35789999999998651               356677 9999999999999999999999999854

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.39  E-value=1.9e-13  Score=98.68  Aligned_cols=56  Identities=25%  Similarity=0.683  Sum_probs=47.3

Q ss_pred             CCCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          308 GPNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      ..++..|+||++++.+.    +.+..++ |||.||..||+.|++.+.+||+||.++.....
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            34578999999999764    5556777 99999999999999999999999999876543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.6e-13  Score=99.96  Aligned_cols=53  Identities=23%  Similarity=0.652  Sum_probs=44.9

Q ss_pred             CCCcccccccccccccCceeeeeCCCC-----CccChHhHHHHHhcC--CCCCCcCCCCcCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECK-----HCFHAECIDEWLRLN--DKCPVCRNSATPV  362 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~~  362 (369)
                      ...+..|+|||++|.+++.+ ++| |+     |.||.+||++||+.+  .+||+||+++...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            34568999999999988877 488 96     999999999999875  5899999988543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.37  E-value=4.3e-13  Score=106.33  Aligned_cols=52  Identities=23%  Similarity=0.518  Sum_probs=42.7

Q ss_pred             CcccccccccccccCc---------------eeeeeCCCCCccChHhHHHHH-----hcCCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQE---------------TIRCIPECKHCFHAECIDEWL-----RLNDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl-----~~~~~CP~Cr~~~~~~  362 (369)
                      .++.|+|||++|.++.               .++.++ |+|.||..||+.|+     +.+.+||+||+.+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            3579999999997654               344666 99999999999999     4578999999987544

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=3.9e-13  Score=96.43  Aligned_cols=52  Identities=27%  Similarity=0.767  Sum_probs=44.7

Q ss_pred             CCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      .+...|+||++++.+.    +.+..++ |+|.||..||+.|++.+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4568999999999864    4446677 99999999999999999999999998754

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.35  E-value=3.6e-13  Score=95.11  Aligned_cols=52  Identities=27%  Similarity=0.731  Sum_probs=45.1

Q ss_pred             CcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ++.+|+||++++.+.    +.+..++ |||.||..||..|++.+.+||+||.++...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            357999999999864    4556777 999999999999999999999999998764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.33  E-value=9.8e-14  Score=109.44  Aligned_cols=53  Identities=28%  Similarity=0.627  Sum_probs=1.6

Q ss_pred             CCcccccccccccccC-------------c--eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQ-------------E--TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~-------------~--~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ..++.|+||+++|.+.             +  .+..++ |+|.||..||++||+.+.+||+||++...+
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~  113 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ  113 (117)
T ss_dssp             CCC------------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence            3568999999999763             2  222245 999999999999999999999999986443

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=94.53  Aligned_cols=51  Identities=31%  Similarity=0.823  Sum_probs=44.7

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      ..+..|+||++.+.+    ..++ |+|.||..||..|++.+.+||+||.++.....
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            346899999999887    5677 99999999999999999999999998876543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.27  E-value=2.1e-12  Score=92.39  Aligned_cols=50  Identities=34%  Similarity=0.873  Sum_probs=43.1

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..+..|+||++++.+  .+..++ |+|.||..|+..|++.+.+||+||.++..
T Consensus         3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            346799999999865  346677 99999999999999999999999998754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=92.90  Aligned_cols=50  Identities=28%  Similarity=0.693  Sum_probs=42.8

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ...+..|+||++.+.+.   ..++ |+|.||..||..|++.+..||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            34568999999998653   4567 99999999999999999999999998753

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=9.2e-12  Score=90.09  Aligned_cols=52  Identities=21%  Similarity=0.545  Sum_probs=43.7

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH  363 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~  363 (369)
                      .....|+||++.+.+  .+..++ |+|.||..||..|++.+..||+||.++....
T Consensus        13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            446899999999876  344446 9999999999999999999999999886543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=89.07  Aligned_cols=51  Identities=22%  Similarity=0.582  Sum_probs=43.6

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~  361 (369)
                      .+..++|+||.+.+..++...   .|+|.||..||+.||+.+  .+||+||++...
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             cCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            445689999999999877654   499999999999999887  889999998653

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.1e-11  Score=91.74  Aligned_cols=53  Identities=23%  Similarity=0.670  Sum_probs=45.0

Q ss_pred             CCcccccccccccccCce-eeeeCCCCCccChHhHHHHHhcC---CCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQET-IRCIPECKHCFHAECIDEWLRLN---DKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~-~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~Cr~~~~~~  362 (369)
                      .+...|+||++.|.+.+. .+.++ |||.||..||..|++.+   ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            446799999999998775 56677 99999999999999876   7899999987543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=6e-11  Score=84.19  Aligned_cols=50  Identities=24%  Similarity=0.523  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHH-hcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL-RLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~Cr~~~~~~  362 (369)
                      .+...|+||++.+.+...   ++ |||.||..||..|+ +.+..||+||.++...
T Consensus        13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            346899999999876543   56 99999999999999 4577899999998654

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.7e-11  Score=87.95  Aligned_cols=48  Identities=25%  Similarity=0.623  Sum_probs=41.5

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      .....|+||++.+.+  .+ .++ |+|.||..||..|++....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~--p~-~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN--PV-VTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS--EE-ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC--ee-Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            345799999999866  33 477 9999999999999999999999999875

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=84.69  Aligned_cols=50  Identities=28%  Similarity=0.674  Sum_probs=41.0

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~~  361 (369)
                      ..+..|+||++.|.+.  +. ++.|+|.||..||..|++.+  ..||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~p--~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMTDA--VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCTTC--EE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHhCC--eE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            4468999999999864  33 65599999999999999865  689999997543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.08  E-value=5e-11  Score=96.70  Aligned_cols=53  Identities=26%  Similarity=0.742  Sum_probs=45.6

Q ss_pred             CCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .++..|+||++.|.+.    +.+..++ |||.||..||+.|++.+.+||+||..+...
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            3467999999999764    5557787 999999999999999999999999987654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=84.39  Aligned_cols=50  Identities=32%  Similarity=0.632  Sum_probs=41.3

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh---cCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR---LNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~Cr~~~~~~  362 (369)
                      ..+..|+||++.+.+  . ..++ |||.||..||..|++   .+..||+||.++...
T Consensus        18 ~~~~~C~IC~~~~~~--~-~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQK--P-VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSS--E-EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCC--e-EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            446799999999885  3 3357 999999999999997   466899999998654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.04  E-value=1.6e-10  Score=81.67  Aligned_cols=51  Identities=20%  Similarity=0.528  Sum_probs=41.3

Q ss_pred             ccccccccc-ccccCcee-eeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          311 SSACPICLS-EFLSQETI-RCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~-~~~~~~~~-~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      +..|+||++ .+.+.... ..++ |||.||..||+.|+.+ ...||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            578999999 77776544 3456 9999999999999765 56799999998654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.03  E-value=1.1e-10  Score=95.52  Aligned_cols=47  Identities=32%  Similarity=0.883  Sum_probs=41.0

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +..|+||++.|.+.   ..+| |||.||..||..|++.+.+||+||.++..
T Consensus        53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            45799999998753   4578 99999999999999999999999998753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.01  E-value=1.2e-10  Score=94.37  Aligned_cols=53  Identities=26%  Similarity=0.742  Sum_probs=45.1

Q ss_pred             CCcccccccccccccC----ceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQ----ETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .+...|+||++++++.    .....++ |||.||..||++|++.+.+||+||.++...
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            4467899999999863    3446676 999999999999999999999999998654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.01  E-value=1.1e-10  Score=90.07  Aligned_cols=48  Identities=27%  Similarity=0.668  Sum_probs=41.1

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~  361 (369)
                      ...|+||++.+.+  .+..++ |||.||..||..|++.+ ..||+||.++..
T Consensus        22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            5799999999875  444466 99999999999999887 699999998754

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=89.16  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=41.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ...|+||++.|.+  .+..++ |||.||..||..|++.+.+||+||..+..
T Consensus        22 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            5789999999876  344346 99999999999999999999999998764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.2e-10  Score=78.05  Aligned_cols=43  Identities=33%  Similarity=0.828  Sum_probs=35.9

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHH---hcCCCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL---RLNDKCPVC  355 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---~~~~~CP~C  355 (369)
                      .++..|+||++.+.+.   ..++ |+|.||..||..|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3467999999999875   3367 99999999999995   457889998

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.99  E-value=4.3e-10  Score=83.70  Aligned_cols=50  Identities=30%  Similarity=0.620  Sum_probs=42.3

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc------CCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL------NDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~Cr~~~~~~  362 (369)
                      ..+..|+||++.+.+..   .++ |+|.||..||..|++.      ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            34679999999987643   577 9999999999999987      67899999988654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.97  E-value=5e-10  Score=82.13  Aligned_cols=50  Identities=20%  Similarity=0.533  Sum_probs=42.3

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      .++..|+||++.|.+.  + .++ |||.||..||..|++. +.+||+||.++...
T Consensus         6 ~~~~~C~IC~~~~~~P--v-~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP--V-IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE--E-EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC--E-EcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4568999999998764  3 357 9999999999999987 78899999988654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.96  E-value=2.4e-10  Score=84.00  Aligned_cols=50  Identities=28%  Similarity=0.586  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-------CCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-------NDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-------~~~CP~Cr~~~~~~  362 (369)
                      .++..|+||++.+.+..   .++ |||.||..||..|++.       ...||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEPL---SLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSCC---CCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCee---ECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            44689999999987643   367 9999999999999987       67899999988653

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.96  E-value=4e-10  Score=88.19  Aligned_cols=50  Identities=26%  Similarity=0.645  Sum_probs=42.8

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .+..|+||++.+.+  .+..++ |||.||..||..|++.+..||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            36799999999875  455447 999999999999999999999999988653

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=9.4e-10  Score=81.84  Aligned_cols=51  Identities=31%  Similarity=0.735  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc------CCCCCCcCCCCcCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL------NDKCPVCRNSATPVH  363 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~Cr~~~~~~~  363 (369)
                      .....|+||++.+.+.   ..++ |+|.||..|+..|++.      ...||+||..+....
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            3467999999998764   3367 9999999999999987      788999999887543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=7.5e-10  Score=77.62  Aligned_cols=43  Identities=35%  Similarity=0.712  Sum_probs=36.0

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh---cCCCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR---LNDKCPVC  355 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~C  355 (369)
                      .++..|+||++.+.+.   ..++ |||.||..||..|++   .+..||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4467999999998863   3357 999999999999998   46689998

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.90  E-value=9.5e-10  Score=92.80  Aligned_cols=49  Identities=39%  Similarity=0.798  Sum_probs=41.6

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP  361 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~  361 (369)
                      ....|+||++.+.+  .+..++ |||.||..||..|++. +..||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            35699999999886  455457 9999999999999987 7889999998753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.82  E-value=1.9e-09  Score=86.47  Aligned_cols=47  Identities=23%  Similarity=0.562  Sum_probs=39.9

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~~  361 (369)
                      +..|+||++.|.+.   ..++ |||.||..||..|+..+. .||+||.++..
T Consensus        52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            56899999998853   2357 999999999999998554 89999999866

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.81  E-value=5.3e-09  Score=79.15  Aligned_cols=49  Identities=29%  Similarity=0.698  Sum_probs=40.2

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~Cr~~~~  360 (369)
                      .++..|+||++.|.+.  + .++.|||.|+..||..|+..+  ..||+||.++.
T Consensus        11 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSC--E-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCc--e-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            4568999999998854  3 355599999999999999753  68999999873

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.80  E-value=3.5e-09  Score=83.17  Aligned_cols=49  Identities=31%  Similarity=0.694  Sum_probs=40.7

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC---CCCCcCCCCcCCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND---KCPVCRNSATPVH  363 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~Cr~~~~~~~  363 (369)
                      ...|+||++.+.+...   ++ |||.||..||..|+..+.   .||+||.++....
T Consensus        21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            4689999999876432   67 999999999999998754   8999999887543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.80  E-value=1.9e-09  Score=75.75  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=41.5

Q ss_pred             CCCcccccccccccccCceee-eeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIR-CIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~-~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..++.+|.||+++..+.  +. .+| |||. |..+|+..|.+.+..||+||+++..
T Consensus         5 ~~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            5 LNAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             CGGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CCCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            45678999999986553  32 238 9999 7899999999999999999998753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.77  E-value=3.3e-09  Score=84.27  Aligned_cols=50  Identities=32%  Similarity=0.582  Sum_probs=41.8

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~~~  362 (369)
                      .+...|+||++.+.+.   ..++ |||.||..||..|++... +||+||.++...
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            4567999999998764   3367 999999999999998765 999999988653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.77  E-value=1e-08  Score=74.91  Aligned_cols=55  Identities=18%  Similarity=0.380  Sum_probs=41.9

Q ss_pred             CCCcccccccccccccCcee-eeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCCC
Q 044271          308 GPNSSACPICLSEFLSQETI-RCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPVH  363 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~-~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~~  363 (369)
                      ..++..|+||++.+...+.. .-++ |||.|+..|+..|.+ .+..||+||+++....
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            34567999999998654432 2234 999999999999874 4678999999876543

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.77  E-value=5.9e-09  Score=72.04  Aligned_cols=49  Identities=24%  Similarity=0.629  Sum_probs=38.5

Q ss_pred             CCCcccccccccccccCceeeeeCCCC--C---ccChHhHHHHHhc--CCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECK--H---CFHAECIDEWLRL--NDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~--H---~fH~~Ci~~wl~~--~~~CP~Cr~~~~  360 (369)
                      ..++..|.||+++.  ++.+ ++| |.  |   .||..|++.|+..  +.+||+||+++.
T Consensus         3 ~~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            3 DEDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34568999999983  3444 577 65  4   9999999999964  678999999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.72  E-value=4.6e-09  Score=71.73  Aligned_cols=49  Identities=20%  Similarity=0.518  Sum_probs=40.1

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHA  364 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~  364 (369)
                      .+...|+||++.|.+.   +.++ |+|.|+..|+..|   ...||+||+.+.....
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence            4567899999999864   4577 9999999999884   6789999998865443

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.72  E-value=5.8e-09  Score=86.38  Aligned_cols=48  Identities=21%  Similarity=0.495  Sum_probs=40.7

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~~~  362 (369)
                      ...|+||++.|.+..  . ++ |||.||..||..|++... .||+||.++...
T Consensus        78 ~~~C~IC~~~~~~pv--~-~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQPV--T-TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSEE--E-CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCCE--E-cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            468999999987643  3 67 999999999999998754 899999998765

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.71  E-value=4.3e-09  Score=83.31  Aligned_cols=48  Identities=33%  Similarity=0.736  Sum_probs=40.8

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      +..|+||++.+.+.  +. ++ |||.||..||..|++. +.+||+||.++...
T Consensus        23 ~~~C~IC~~~~~~p--~~-~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHILADP--VE-TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBCSSE--EE-CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHhcCc--EE-cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            57899999998753  33 67 9999999999999987 78899999987654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.69  E-value=2.4e-09  Score=84.71  Aligned_cols=48  Identities=23%  Similarity=0.661  Sum_probs=40.4

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~  360 (369)
                      .++..|+||++.+.+.   ..++ |||.||..||..|++. +..||+||..+.
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            4467999999998753   3357 9999999999999976 678999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.67  E-value=1e-08  Score=96.75  Aligned_cols=48  Identities=25%  Similarity=0.684  Sum_probs=41.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~~  362 (369)
                      ...|+||++.+.+   ...+| |||.||..|+..|+. .+.+||+||.++...
T Consensus       332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            4799999999855   45678 999999999999998 788999999987654

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.66  E-value=1.1e-08  Score=71.66  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=40.8

Q ss_pred             CCcccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..+..|.||++...+.. +..+| |||. |...|+..|.+.+..||+||+++..
T Consensus         5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            45679999999855432 12237 9998 9999999999888999999998753

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.63  E-value=7.1e-09  Score=94.94  Aligned_cols=53  Identities=25%  Similarity=0.636  Sum_probs=41.4

Q ss_pred             CCcccccccccccccCcee----eeeCCCCCccChHhHHHHHhcC-----------CCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETI----RCIPECKHCFHAECIDEWLRLN-----------DKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~----~~l~~C~H~fH~~Ci~~wl~~~-----------~~CP~Cr~~~~~  361 (369)
                      ....+|+||++.+.++..+    ...++|+|.||..|+.+||+..           ..||+||+++..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4568999999999874433    2233599999999999999753           469999998754

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.54  E-value=1.3e-08  Score=83.33  Aligned_cols=48  Identities=17%  Similarity=0.453  Sum_probs=40.2

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC-CCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~Cr~~~~  360 (369)
                      .+...|+||++.+.+.  + .++ |||.|+..||..|++... .||+||.++.
T Consensus        29 ~~~~~C~IC~~~~~~p--v-~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP--F-QAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CcCcCCCCCChhhcCc--E-ECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            4568999999998775  3 366 999999999999998664 8999999764

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.51  E-value=2.8e-08  Score=71.94  Aligned_cols=43  Identities=33%  Similarity=0.784  Sum_probs=36.7

Q ss_pred             cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +..|+||++.+.+   ...+| |||. |+..|+..|    ..||+||..+..
T Consensus        24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            5689999998755   44578 9999 999999998    889999998754

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.50  E-value=7.5e-08  Score=71.60  Aligned_cols=50  Identities=16%  Similarity=0.128  Sum_probs=42.8

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .....|+||++-|++.-   +++ |||.|.+.||..|+..+.+||+||.++...
T Consensus        12 p~~~~CpI~~~~m~dPV---~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPV---RLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCCe---ECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            45789999999988743   367 999999999999999999999999987643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.49  E-value=3.3e-08  Score=78.27  Aligned_cols=46  Identities=24%  Similarity=0.569  Sum_probs=38.5

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ...|+||++.|.+.  +...+ |||.|+..||..|+.  ..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             CCCCCCCChHhhCc--cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            57999999998754  33336 999999999999988  889999998754

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.44  E-value=1.5e-07  Score=72.19  Aligned_cols=50  Identities=18%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .....|+||++-|++.-  . ++ |||.|.+.||..|+..+.+||+||.++...
T Consensus        27 p~~~~CpI~~~~m~dPV--~-~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPV--R-LP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSSEE--E-ET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccCCe--E-CC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            45789999999987743  3 67 999999999999999999999999988654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.43  E-value=1.8e-07  Score=71.47  Aligned_cols=50  Identities=16%  Similarity=0.132  Sum_probs=42.8

Q ss_pred             CCcccccccccccccCceeeeeCCCC-CccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECK-HCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~-H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ..+..|+||++-|++.  |. ++ || |.|.+.||..|+..+.+||+||.++...
T Consensus        20 p~~~~CpI~~~~m~dP--V~-~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP--VV-LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE--EE-CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccCC--eE-CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            3468999999998774  33 66 99 9999999999999999999999988654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.35  E-value=1.6e-07  Score=71.25  Aligned_cols=48  Identities=27%  Similarity=0.729  Sum_probs=40.9

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCC--cCCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPV--CRNS  358 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~--Cr~~  358 (369)
                      ....|+||++++...+.++..+ |+|.|+.+|+..+++.        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3568999999998888777667 9999999999999963        247999  9987

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.32  E-value=1.9e-07  Score=78.96  Aligned_cols=50  Identities=32%  Similarity=0.618  Sum_probs=41.6

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~~  362 (369)
                      .+...|+||++.+.+.  + .++ |||.|+..||..|++.. .+||+||.++...
T Consensus        16 ~~~~~C~IC~~~~~~p--v-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALREA--V-QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcCc--E-ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4568999999998764  3 367 99999999999999764 4999999988653

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=4.7e-07  Score=64.18  Aligned_cols=45  Identities=27%  Similarity=0.734  Sum_probs=37.0

Q ss_pred             CCcccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      .+...|.||++...+   +..+| |+|. |...|+..    ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            446799999998654   66688 9999 99999984    5789999998754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=2e-07  Score=67.52  Aligned_cols=44  Identities=32%  Similarity=0.756  Sum_probs=35.8

Q ss_pred             cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      +..|+||++.+.+   ...+| |||. |+..|+..    ...||+||.++...
T Consensus        25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            4689999998755   34577 9999 99999964    47899999988653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1.2e-06  Score=66.28  Aligned_cols=47  Identities=21%  Similarity=0.566  Sum_probs=38.2

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC------CCCCC--cCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN------DKCPV--CRNS  358 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~------~~CP~--Cr~~  358 (369)
                      .....|+||++-|++  .|. ++.|||.|.+.||..|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~d--PV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK--PVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSS--EEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcC--CEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            446899999999875  555 43399999999999999764      58999  9865

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.12  E-value=7.2e-07  Score=65.23  Aligned_cols=43  Identities=28%  Similarity=0.719  Sum_probs=35.7

Q ss_pred             cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +..|.||++...+   ...+| |||. |...|+..|    ..||+||..+..
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            4689999998654   55688 9999 999999987    499999998653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.01  E-value=2e-06  Score=59.40  Aligned_cols=49  Identities=8%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ...|+|+++-+++  .|...+ +||.|-+.||..|++++.+||+.+.++...
T Consensus         3 ~~~CpIs~~~m~d--PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            3 HMLCAISGKVPRR--PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             -CCCTTTCSCCSS--EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             eEEecCCCCCCCC--CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            4689999999885  454325 999999999999999988999999987654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.99  E-value=3.7e-06  Score=76.56  Aligned_cols=50  Identities=20%  Similarity=0.208  Sum_probs=41.3

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP  361 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~  361 (369)
                      ......|+||++-|.+.  |. ++ |||.|.+.||..|+.. +.+||+||.++..
T Consensus       205 ~~~~~~c~i~~~~~~dP--v~-~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          205 IPDYLCGKISFELMREP--CI-TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCSTTBCTTTCSBCSSE--EE-CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCcccCCcCcCCHhcCC--eE-CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            44678999999998764  33 67 9999999999999986 4459999998854

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.82  E-value=8.1e-06  Score=68.94  Aligned_cols=51  Identities=20%  Similarity=0.161  Sum_probs=42.1

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATPV  362 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~~  362 (369)
                      ......|+||++-|.+  +|. ++ |||.|.+.||..|+..+ .+||+||.++...
T Consensus       103 ip~~f~CPI~~elm~D--PV~-~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          103 IPDYLCGKISFELMRE--PCI-TP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CCGGGBCTTTCSBCSS--EEE-CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CcHhhcccCccccCCC--CeE-CC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            4567899999999886  444 47 99999999999999764 5799999987643

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.78  E-value=5.9e-06  Score=77.37  Aligned_cols=43  Identities=33%  Similarity=0.828  Sum_probs=36.7

Q ss_pred             cccccccccccccCceeeeeCCCCCc-cChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHC-FHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      +..|+||++.+.+   ...+| |||. |+..|+..|    ..||+||..+..
T Consensus       295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            5799999998764   44578 9999 999999998    789999998754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.76  E-value=1e-05  Score=71.89  Aligned_cols=50  Identities=22%  Similarity=0.537  Sum_probs=40.6

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC--CCCCC--cCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN--DKCPV--CRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~--Cr~~~~~  361 (369)
                      .....|+||++-|++  .|+... |||.|.+.||..|++.+  ..||+  ||..+..
T Consensus       179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            345799999999855  666556 99999999999999764  56999  9997654

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.66  E-value=3.9e-05  Score=57.27  Aligned_cols=45  Identities=29%  Similarity=0.583  Sum_probs=36.1

Q ss_pred             ccccccccccCceeeeeCCCCCccChHhHHHHHh-cCCCCCCcCCCCcC
Q 044271          314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-LNDKCPVCRNSATP  361 (369)
Q Consensus       314 C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~Cr~~~~~  361 (369)
                      |.+|--.+  ....|.+| |+|+|..+|+..|.+ +.++||+|+.++.-
T Consensus         4 C~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            56665553  34678999 999999999999985 57889999998753

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.54  E-value=7.6e-05  Score=66.18  Aligned_cols=50  Identities=22%  Similarity=0.593  Sum_probs=40.6

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCC--CCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND--KCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~Cr~~~~~~  362 (369)
                      ....|+||.+-...|...   +.|+|.||..|+..|++.+.  .||.|+.+-...
T Consensus       179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            468999999998876543   34999999999999997754  899999875443

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.24  E-value=0.02  Score=39.72  Aligned_cols=51  Identities=22%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCcCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSATPVH  363 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~~~~  363 (369)
                      ..+..|.||.+   .++.+. --.|...||..|+++.|..    ...||.|+....++.
T Consensus        10 ~~~~~C~vC~~---~~~ll~-Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P   64 (66)
T 2lri_C           10 APGARCGVCGD---GTDVLR-CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP   64 (66)
T ss_dssp             CTTCCCTTTSC---CTTCEE-CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred             CCCCCcCCCCC---CCeEEE-CCCCCCceecccCCCccCcCCCCCEECccccCCCccCC
Confidence            34578999975   344443 3458999999999998855    457999988766553

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=88.36  E-value=0.21  Score=37.43  Aligned_cols=35  Identities=17%  Similarity=0.560  Sum_probs=27.5

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHH-HH
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDE-WL  346 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~-wl  346 (369)
                      +..|.||++++.......-+. |+|.|...|+.. |-
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP   38 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence            468999998865555545466 999999999998 53

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=85.29  E-value=1.1  Score=32.10  Aligned_cols=48  Identities=21%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHH------------Hhc----CCCCCCcCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW------------LRL----NDKCPVCRN  357 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w------------l~~----~~~CP~Cr~  357 (369)
                      ...++.|.||-. +..++... ..-|+-+||..|+++.            ++.    ..+||-|..
T Consensus        12 ~~~D~~C~VC~~-~t~~~l~p-CRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen   75 (89)
T 1wil_A           12 VVNDEMCDVCEV-WTAESLFP-CRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN   75 (89)
T ss_dssp             CCCSCCCTTTCC-CCSSCCSS-CSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred             CCCCcccCcccc-ccccceec-cccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence            346789999852 33333322 2237999999999996            211    356999965

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=85.12  E-value=0.58  Score=34.14  Aligned_cols=49  Identities=20%  Similarity=0.584  Sum_probs=35.3

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~  360 (369)
                      ...++.|.+|.+.   ++.+. .-.|.-.||..|+++=|..    ...||.|+....
T Consensus        22 d~n~~~C~vC~~~---g~LL~-CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~   74 (88)
T 1fp0_A           22 DDSATICRVCQKP---GDLVM-CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   74 (88)
T ss_dssp             SSSSSCCSSSCSS---SCCEE-CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCcCcCcCCC---CCEEE-CCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence            4557899999964   44333 3358899999999886643    456999986543

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=84.36  E-value=0.27  Score=37.67  Aligned_cols=48  Identities=25%  Similarity=0.641  Sum_probs=32.7

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCR  356 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr  356 (369)
                      ...++.|.||.+.=+..+.+.- ..|...||..|++..+..    ...||-|+
T Consensus         4 ~~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            4 GSSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence            3457899999887433333443 349999999999987742    34466654

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=84.12  E-value=0.45  Score=32.14  Aligned_cols=47  Identities=26%  Similarity=0.646  Sum_probs=33.7

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHh----cCCCCCCcCCC
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR----LNDKCPVCRNS  358 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~----~~~~CP~Cr~~  358 (369)
                      ...+..|.||.+.   ++.+.-- .|...||..|+++=+.    ....||.|+..
T Consensus         8 ~~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            4557899999873   4444433 4899999999998653    34569999753

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=84.04  E-value=0.38  Score=32.50  Aligned_cols=49  Identities=22%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~  360 (369)
                      ...+..|.||.+.   ++.+. --.|...||..|+.+=|..    ...||.|+....
T Consensus         6 d~~~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   58 (61)
T 1mm2_A            6 DHHMEFCRVCKDG---GELLC-CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             CSSCSSCTTTCCC---SSCBC-CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             cCCCCcCCCCCCC---CCEEE-cCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence            3456789999852   44333 3348999999999975543    456999987654

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=83.85  E-value=0.24  Score=33.75  Aligned_cols=50  Identities=28%  Similarity=0.612  Sum_probs=35.7

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHh-----cCCCCCCcCCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLR-----LNDKCPVCRNS  358 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~Cr~~  358 (369)
                      .++..|+||...+.++...+..-.|..=||..|+..-..     ....||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            456789999999875544443445899999999875332     35679999754

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.51  E-value=1  Score=28.09  Aligned_cols=13  Identities=0%  Similarity=0.079  Sum_probs=4.9

Q ss_pred             HHHHHHHhhhhce
Q 044271          244 PALICASAIGICA  256 (369)
Q Consensus       244 ~~l~~~~~~~~~~  256 (369)
                      +++++++.+.+++
T Consensus        20 v~~v~ii~~~~~~   32 (44)
T 2l2t_A           20 LFILVIVGLTFAV   32 (44)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=82.45  E-value=0.6  Score=30.11  Aligned_cols=44  Identities=27%  Similarity=0.606  Sum_probs=30.2

Q ss_pred             cccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271          313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN  357 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~  357 (369)
                      .|.||.+.-..++.+. --.|...||..|+++=+..    ...||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~-Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLIL-CDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEE-CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEE-CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            5888887644444444 3358999999999864433    445999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	5e-15
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-08
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-07
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-06
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	7e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-05
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 66.4 bits (162), Expect = 5e-15
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNS 358
           C +CL+E    E  R +P C H FHAEC+D WL  +  CP+CR +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           CPICL +         +P C H F   CI  W+R N  CP+C+
Sbjct: 8   CPICLEDP--SNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 14/57 (24%)

Query: 314 CPICLSEFLSQETIRCIPE--------------CKHCFHAECIDEWLRLNDKCPVCR 356
           C IC +  +         +              C H FH  CI  WL+    CP+  
Sbjct: 24  CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATPVHASSVNP 369
           C IC       + ++  P C H     C+  W       CP CR          V+P
Sbjct: 26  CKICAEND---KDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 78

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 1e-07
 Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNS 358
           CP+C+      +       C +     C        N  CP CR  
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 48

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 314 CPICLSEFLSQETIRCIP-ECKHCFHAECIDEWLRLN-DKCPVCR 356
           CP C +      +++ +   C H     C+D         CP C 
Sbjct: 6   CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 19/73 (26%)

Query: 303 SKRLPGPNSSACPICL--------------SEFLSQETIRCIPECKHCFHAECIDEWLR- 347
           ++ L       C IC+              S+ L    +  + +C H FH  C+      
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 348 ----LNDKCPVCR 356
                + +CP C+
Sbjct: 77  GNKDGSLQCPSCK 89

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 41.0 bits (95), Expect = 7e-06
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 314 CPICLSEF-LSQETIRCIPECKHCFHAECIDEWLRLND--KCPVCR 356
           C IC  E    +             H  C+  WL ++    C +C 
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCR 356
           C  C +E    +  + +P C H   + C++       +CP+C+
Sbjct: 9   CQQCQAEA---KCPKLLP-CLHTLCSGCLEAS---GMQCPICQ 44

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWL---RLNDKCPVCRNSATP 361
           CPICL             +C H F   C+ + L   +   +CP+C+N  T 
Sbjct: 24  CPICLELI----KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 314 CPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP 361
           C  C +         C+  C+H F + C+ +   +   CPVC   A  
Sbjct: 25  CSRCTNIL---REPVCLGGCEHIFCSNCVSDC--IGTGCPVCYTPAWI 67

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLND-KCPVCRNSATP 361
            S +C IC               CKH F   CI   L++    CP CR    P
Sbjct: 22  KSISCQICEHIL----ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 9/54 (16%)

Query: 311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL--------RLNDKCPVCR 356
           SS C +CL E+  ++      +C+  F   C+ +++             CP   
Sbjct: 5   SSGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.72
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.48
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.45
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.43
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.33
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.13
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.12
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.11
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.95
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.91
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.74
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.54
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.46
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.42
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.26
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	92.74
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	91.76
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	88.01
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	86.69
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	86.05
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	83.28
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	80.06

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.72  E-value=9.4e-19  Score=117.91  Aligned_cols=52  Identities=40%  Similarity=0.995  Sum_probs=47.8

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      +++.+|+|||++|.+++.++.++.|+|.||..||++|++.+.+||+||+++.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            3457899999999999999988779999999999999999999999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.48  E-value=7.3e-15  Score=103.41  Aligned_cols=49  Identities=35%  Similarity=0.890  Sum_probs=42.8

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATP  361 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~  361 (369)
                      ..++|+||++.+.+  .++.++ |+|.||..||..|++.+.+||+||+++..
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            46789999999865  456677 99999999999999999999999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-14  Score=96.55  Aligned_cols=48  Identities=21%  Similarity=0.454  Sum_probs=40.7

Q ss_pred             cccccccccccCceee-eeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcC
Q 044271          313 ACPICLSEFLSQETIR-CIPECKHCFHAECIDEWLRL-NDKCPVCRNSATP  361 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~-~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~  361 (369)
                      +|+|||++|..++.+. .++ |||.||.+|+++|++. +.+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            7999999998877654 455 9999999999999986 5579999998754

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.3e-14  Score=105.32  Aligned_cols=50  Identities=28%  Similarity=0.673  Sum_probs=42.1

Q ss_pred             CcccccccccccccCc---------------eeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCc
Q 044271          310 NSSACPICLSEFLSQE---------------TIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSAT  360 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~  360 (369)
                      .+++|+||++++.+..               .+..++ |+|+||..||++||+.+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            4578999999886533               356677 9999999999999999999999999753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.5e-13  Score=97.45  Aligned_cols=55  Identities=25%  Similarity=0.668  Sum_probs=44.7

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCCCCCCCCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPVHASSVNP  369 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~~  369 (369)
                      ...|+||++++.+   .+.+| |||.||..||..||+. +.+||+||.++.....-..+|
T Consensus        23 ~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i~~   78 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP   78 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSCCC
T ss_pred             CCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCceeecCC
Confidence            4679999998765   56688 9999999999999975 578999999998765544443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.9e-13  Score=93.38  Aligned_cols=52  Identities=19%  Similarity=0.523  Sum_probs=41.1

Q ss_pred             CcccccccccccccC-c-eeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLSQ-E-TIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~-~-~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      ++..|+||++++..+ + .+..++ |+|.||..||..|++. +.+||+||+++...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            468999999986543 3 334456 9999999999999965 56799999988554

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=5.3e-13  Score=103.90  Aligned_cols=52  Identities=23%  Similarity=0.496  Sum_probs=40.7

Q ss_pred             Cccccccccccccc---------------CceeeeeCCCCCccChHhHHHHHhc-----CCCCCCcCCCCcCC
Q 044271          310 NSSACPICLSEFLS---------------QETIRCIPECKHCFHAECIDEWLRL-----NDKCPVCRNSATPV  362 (369)
Q Consensus       310 ~~~~C~ICL~~~~~---------------~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~Cr~~~~~~  362 (369)
                      .++.|+||++++..               ...++.++ |+|.||..||+.||+.     +.+||+||+.+...
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            36789999999854               23455666 9999999999999974     34799999876443

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.4e-12  Score=84.37  Aligned_cols=50  Identities=20%  Similarity=0.546  Sum_probs=41.0

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCCCCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVHASS  366 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~  366 (369)
                      +..+|+||++.+.+.   +.+| |||.||..||+.|   +.+||+||+++....+.+
T Consensus         5 ~~l~C~IC~~~~~~p---~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCC---EEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCCCCC
Confidence            346999999999764   4578 9999999999875   678999999998766544

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.12  E-value=1.4e-11  Score=83.94  Aligned_cols=53  Identities=21%  Similarity=0.434  Sum_probs=39.0

Q ss_pred             CCCcccccccccccccCceee-eeCCCCCccChHhHHHHHh--cCCCCCCcCCCCc
Q 044271          308 GPNSSACPICLSEFLSQETIR-CIPECKHCFHAECIDEWLR--LNDKCPVCRNSAT  360 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~-~l~~C~H~fH~~Ci~~wl~--~~~~CP~Cr~~~~  360 (369)
                      .++...|.||++++.+..... ....|+|.||..||..|++  .+.+||+||++..
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            456789999999986543221 1112469999999999995  4678999999764

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=8e-12  Score=83.83  Aligned_cols=48  Identities=10%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             cccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCCC
Q 044271          313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPVH  363 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~~  363 (369)
                      .|+||++.+++  .+. ++.|||.|+++||.+||+++.+||+||+++....
T Consensus         2 ~C~Ic~~~~~~--Pv~-~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~d   49 (56)
T d2baya1           2 LCAISGKVPRR--PVL-SPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   49 (56)
T ss_dssp             CCTTTCSCCSS--EEE-ETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             CCccCCchHHh--cCc-cCCCCCcccHHHHHHHHhhccCCCccCCcCCHHh
Confidence            69999999864  444 4449999999999999999999999999987654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.5e-10  Score=84.20  Aligned_cols=49  Identities=33%  Similarity=0.666  Sum_probs=40.4

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPVH  363 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~~  363 (369)
                      ...|+||++.+++.   .+++ |||.|+..||..|++. +..||+||.++.+..
T Consensus        23 ~l~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CcCCccCCcchhcc---eecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            46899999998653   4577 9999999999999975 568999999876543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.6e-10  Score=85.70  Aligned_cols=49  Identities=31%  Similarity=0.718  Sum_probs=40.0

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcC---CCCCCcCCCCcCCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN---DKCPVCRNSATPVH  363 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~Cr~~~~~~~  363 (369)
                      ...|+||++.|++.  + .++ |||.||..||..|++.+   ..||+||.++....
T Consensus        21 ~l~CpIC~~~~~~p--v-~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          21 ILECPICLELIKEP--V-STK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HTSCSSSCCCCSSC--C-BCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CcCCCccCchhCCe--E-EcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            35899999998764  3 367 99999999999999764   47999999886543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-09  Score=81.74  Aligned_cols=47  Identities=23%  Similarity=0.546  Sum_probs=38.3

Q ss_pred             cccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          311 SSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       311 ~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      ...|+||++.|.+.  +...+ |||.||..||..|+.  ..||+||.++...
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             cCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            45899999999764  44445 999999999999984  4599999987654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=2.9e-08  Score=70.88  Aligned_cols=50  Identities=20%  Similarity=0.528  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcC-CCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLN-DKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~Cr~~~~~~  362 (369)
                      .++..|+||++-|.+.  | +++ |||.|.+.||..|++.+ ..||.|+.++...
T Consensus         6 P~~l~CpIc~~~m~dP--V-~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP--V-IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE--E-EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCc--e-Ecc-CCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            3568999999998774  4 467 99999999999999764 6799999988654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=4.1e-08  Score=70.40  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc-CCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL-NDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~Cr~~~~~~  362 (369)
                      .++..|+||++-|++.  | +++ |||.|.+.||..|+.+ +.+||+||.++...
T Consensus         5 P~~l~CpIc~~l~~dP--v-~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP--C-ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE--E-ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh--c-ccC-CcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            4578999999998774  4 467 9999999999999975 56799999987643

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4e-08  Score=72.79  Aligned_cols=47  Identities=26%  Similarity=0.649  Sum_probs=38.7

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc--------CCCCCCcCC
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL--------NDKCPVCRN  357 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~Cr~  357 (369)
                      ...+|+||++++...+.++.++ |+|.||.+|+..|++.        ..+||.|+-
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4579999999998888877766 9999999999999953        235998653

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.1e-07  Score=67.56  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhcCCCCCCcCCCCcCC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRLNDKCPVCRNSATPV  362 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~Cr~~~~~~  362 (369)
                      .++..|+||++-|.+.-   +++.|+|.|.+.||..||+.+..||+||.++...
T Consensus        20 P~~f~CPI~~~lm~dPV---~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHHhCCcCchhHHHHHH---hcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            34689999999987743   3663556899999999999999999999988654

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.74  E-value=0.011  Score=38.96  Aligned_cols=53  Identities=28%  Similarity=0.614  Sum_probs=39.0

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHH-----hcCCCCCCcCCCCcC
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWL-----RLNDKCPVCRNSATP  361 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl-----~~~~~CP~Cr~~~~~  361 (369)
                      .....|.||.+.+.+++....--.|+.-||..|+..=.     ..+..||.|+..-.+
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCCC
Confidence            45679999999888877655555699999999997421     135679999865444

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.033  Score=34.76  Aligned_cols=44  Identities=25%  Similarity=0.594  Sum_probs=31.7

Q ss_pred             cccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCC
Q 044271          313 ACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRN  357 (369)
Q Consensus       313 ~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~  357 (369)
                      .|.||-..-..++ +..--.|...||..|+++-+..    ...||.||.
T Consensus         2 ~C~vC~~~~~~~~-~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSC-CEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCC-EEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5888876644444 4444569999999999997744    345999985

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.01  E-value=0.12  Score=34.45  Aligned_cols=47  Identities=21%  Similarity=0.625  Sum_probs=32.5

Q ss_pred             CcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271          310 NSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT  360 (369)
Q Consensus       310 ~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~  360 (369)
                      ....|.||.+   .++.+ .--.|...||..|+.+.+..    ...||.|+....
T Consensus         6 ~c~~C~~C~~---~~~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           6 SATICRVCQK---PGDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SSSCCSSSCS---SSCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCCCC---cCEEE-ECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            3467777754   34433 34458999999999988744    455999976543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.69  E-value=0.71  Score=31.14  Aligned_cols=51  Identities=20%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             ccccccccccccCceeeeeCCCCCccChHhHH--HHH-h--cCCCCCCcCCCCcCC
Q 044271          312 SACPICLSEFLSQETIRCIPECKHCFHAECID--EWL-R--LNDKCPVCRNSATPV  362 (369)
Q Consensus       312 ~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~--~wl-~--~~~~CP~Cr~~~~~~  362 (369)
                      .++-||.+.+..++..+.--.|.--||..|+.  ..- .  .+..||.|+....+.
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp~   67 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS   67 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCCc
Confidence            45559998877665555555699999999995  222 1  246799998765443

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.05  E-value=0.098  Score=33.82  Aligned_cols=48  Identities=23%  Similarity=0.522  Sum_probs=33.7

Q ss_pred             CCcccccccccccccCceeeeeCCCCCccChHhHHHHHhc----CCCCCCcCCCCc
Q 044271          309 PNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEWLRL----NDKCPVCRNSAT  360 (369)
Q Consensus       309 ~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~Cr~~~~  360 (369)
                      ..++.|.||.+   .++.|. --.|.-.||..|++..+..    ...||.|+....
T Consensus         7 ~~~~~C~~C~~---~g~lv~-Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_           7 HHMEFCRVCKD---GGELLC-CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SSCSSCTTTCC---CSSCBC-CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCcCCCcCCCC---CCeEEE-eCCCCccCchhhcCCCcCcCCCCcEECCCCcCccc
Confidence            44578999975   344433 3348999999999876643    456999986543

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.28  E-value=0.044  Score=38.46  Aligned_cols=48  Identities=19%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             ccccccccccccc-CceeeeeCCCCCccChHhHHHHHh-----c---CCCCCCcCCC
Q 044271          311 SSACPICLSEFLS-QETIRCIPECKHCFHAECIDEWLR-----L---NDKCPVCRNS  358 (369)
Q Consensus       311 ~~~C~ICL~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~-----~---~~~CP~Cr~~  358 (369)
                      ...|.||...... ...+...-.|...||..|+.+.+.     .   ...||.|+..
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~   72 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCch
Confidence            4579999875433 334444445899999999875432     1   4569999654

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.06  E-value=0.73  Score=31.04  Aligned_cols=36  Identities=19%  Similarity=0.537  Sum_probs=26.4

Q ss_pred             CCCcccccccccccccCceeeeeCCCCCccChHhHHHH
Q 044271          308 GPNSSACPICLSEFLSQETIRCIPECKHCFHAECIDEW  345 (369)
Q Consensus       308 ~~~~~~C~ICL~~~~~~~~~~~l~~C~H~fH~~Ci~~w  345 (369)
                      ...+..|.|| +-+...+.. -..-|+-+||..|+++.
T Consensus        12 v~~D~mC~vC-~v~t~~~l~-pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESLF-PCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Cccccccee-cceeecchhhHHHHHHh
Confidence            4567899999 666555543 22247899999999997