Citrus Sinensis ID: 044279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKFLAL
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEEEEEEccHHHHHHcccHHHHHcccEEEEccccccccccccccccEEEEEccccccccEEccccccccccccccEEEEcccccccccccccccccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEcccccccccccccccccccEEEEccHHHHHccEEcccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccHHHccHHHHHHHHHEEEEcccccHHHccHHHHHHHHcEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHcccEEEEccccccEEEEEcccccccccccccEEEEEccccccccccHHHccccccEEEEcccHHHHHHcccccccccccccccccccHHHcEEEccccHcHHHccccccccccccEEEEcccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHcccccccc
Coil and Loop (DISEMBL)
MHALAVLDlsynfdlveLPEAIGKLINLChlnlsntkirelPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCfvdthafcrfqsspklqsCVKRLtvaspwfssLDFRMDHLETLEIVDCSLESIniyfgdqgrtycfrnlrhlsvkdchfmtdlkwircapnlqflyvSDCQVLSEIIgtyespgtseieeSHHFLSNLMvidlqhlpsltsiccravplpslktisvydcpglrklplnsgsaknsLNAIRGSRewwdqlewededtknVFASKFLAL
Flexible Loop (DISEMBL)
MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFqsspklqscVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGlrklplnsgsaknslnAIRGSREWWdqlewededtknvfaskflal
Low Complexity Region (SEG)
MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSRewwdqlewededTKNVFASKFLAL
Disordered region (IsUnstruct)
***LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN*******LNAIRGSREWWDQLEWEDEDTKNVF*******
Disordered Region (DISOPRED)
MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCC**********LENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYE************FLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLR*****************GSREWWDQLEWEDEDTKNVFASKFLAL
Disordered Region (DISEMBL)
MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKFLAL
Disordered Region (DISPRO)
*HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKFLAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKFLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
O64789	925	Probable disease resistan	yes	no	0.934	0.308	0.338	3e-30
O22727	967	Probable disease resistan	no	no	0.944	0.297	0.343	5e-30
O64790	762	Probable disease resistan	no	no	0.944	0.377	0.327	8e-28
Q9C8T9	898	Putative disease resistan	no	no	0.944	0.320	0.327	3e-27
Q940K0	889	Probable disease resistan	no	no	0.950	0.326	0.344	3e-26
Q9SI85	893	Probable disease resistan	no	no	0.944	0.322	0.336	6e-26
Q9LVT3	948	Probable disease resistan	no	no	0.967	0.311	0.305	2e-24
O64973	889	Disease resistance protei	no	no	0.954	0.327	0.317	4e-24
O82484	892	Putative disease resistan	no	no	0.967	0.330	0.297	1e-23
Q9SH22	884	Probable disease resistan	no	no	0.947	0.326	0.318	2e-23

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 157/334 (47%), Gaps = 49/334 (14%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N D  ELPE I  L++L +L+LS T+I +LP G+K LK L  L L   +
Sbjct: 569 MQKLVVLDLSDNRDFNELPEQISGLVSLQYLDLSFTRIEQLPVGLKELKKLTFLDLAYTA 628

Query: 61  WFST-----------ELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
              +            L  L        +VL  L+ LEN+ D++ITL             
Sbjct: 629 RLCSISGISRLLSLRVLSLLGSKVHGDASVLKELQQLENLQDLAITL------------- 675

Query: 110 SPKLQSCVKRLT-----------VASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQG 158
           S +L S  +RL            +  P+  S    M++L +L + +     I     +  
Sbjct: 676 SAELISLDQRLAKVISILGIEGFLQKPFDLSFLASMENLSSLWVKNSYFSEIKCRESETD 735

Query: 159 RTY--------CFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP 210
            +Y        CF NL  L +  CH M DL WI  APNL  L++ D + + EII   ++ 
Sbjct: 736 SSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAPNLVVLFIEDSREVGEIINKEKAT 795

Query: 211 GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA 270
             + I     FL  L  + L +LP L SI    +P P L  I V +CP LRKLPLN+ SA
Sbjct: 796 NLTSI---TPFL-KLERLILCYLPKLESIYWSPLPFPLLLNIDVEECPKLRKLPLNATSA 851

Query: 271 KNSLNAIRGSREWWDQLEWEDEDTKNVFASKFLA 304
              +   R    +  +LEWEDEDTKN F  + ++
Sbjct: 852 PK-VEEFR-ILMYPPELEWEDEDTKNRFLPEMVS 883

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 147/326 (45%), Gaps = 38/326 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS+N D  ELPE I  L++L +L+LS T+I +LP G+K LK L  L L    
Sbjct: 560 MQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNL---- 615

Query: 61  WFSTELVAL---------------HHNFCCATTVLAGLESLENIHDISITLCFVDTHAFC 105
            F+  L ++                 N     +VL  L+ LEN+ D+ IT          
Sbjct: 616 CFTERLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRIT---ESAELIS 672

Query: 106 RFQSSPKLQSCVK-RLTVASPWFSSLDFRMDHLETLEIVDCSLESINI----------YF 154
             Q   KL S ++    +  P+  S    M++L  L + +     INI          Y 
Sbjct: 673 LDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYL 732

Query: 155 GDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE 214
               +  CF NL  L +  CH M DL WI  APNL  L + D + + EII   ++   + 
Sbjct: 733 HINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTS 792

Query: 215 IEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK--N 272
           I      L  L    L  LP L SI    +P P L  I V  CP LRKLPLN+ S     
Sbjct: 793 IITPFQKLERLF---LYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVE 849

Query: 273 SLNAIRGSREWWDQLEWEDEDTKNVF 298
                    E  ++LEWEDEDTKN F
Sbjct: 850 EFEIRMDPPEQENELEWEDEDTKNRF 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  124 bits (311), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 150/324 (46%), Gaps = 36/324 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIK------YLKNLKIL 54
           M  L VLDLSYN D  +LPE I  L++L  L+LSNT I++LP G+K      +L     +
Sbjct: 445 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNLAYTV 504

Query: 55  RLDVFSWFSTELVALHHNFCCA-----TTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
           RL   S  S  L         +      +VL  L+ L+N+  ++ITL             
Sbjct: 505 RLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQKLQNLQHLAITLS-------AELSL 557

Query: 110 SPKLQSCVKRLTVAS----PWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTY---- 161
           + +L + +  L +      P+  S    M++L +L + +     I     +   +Y    
Sbjct: 558 NQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWVKNSYFSEIKCRESETASSYLRIN 617

Query: 162 ----CFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE 217
               CF NL  L +  CH + DL WI  APNL +LY+ D + + EII   ++   + I  
Sbjct: 618 PKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEIINKEKATNLTSITP 677

Query: 218 SHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK--NSLN 275
              FL  L  + L +LP L SI    +  P L  I V DCP LRKLPLN+ S        
Sbjct: 678 ---FLK-LERLILYNLPKLESIYWSPLHFPRLLIIHVLDCPKLRKLPLNATSVPLVEEFQ 733

Query: 276 AIRGSREWWDQLEWEDEDTKNVFA 299
                    ++LEWEDEDTKN F 
Sbjct: 734 IRMYPPGLGNELEWEDEDTKNRFV 757

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 158/321 (49%), Gaps = 33/321 (10%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  LAVLDLS N+ L ELP  I +L++L +LNLS+T IR LP G++ LK L  L L+  S
Sbjct: 560 MPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTS 619

Query: 61  WFSTEL-VALHHN----------FCCATTVLAGLESLENIHDISITL--CFVDTHAFCRF 107
              + + ++  HN          +      +  LE+LE++  ++ T+  C + T    +F
Sbjct: 620 QLGSMVGISCLHNLKVLKLSGSSYAWDLDTVKELEALEHLEVLTTTIDDCTLGTD---QF 676

Query: 108 QSSPKLQSCVKRLT-------VASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT 160
            SS +L SC++ L          +    SL   MD L+   I  C    I +     GR 
Sbjct: 677 LSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIKM-----GRI 731

Query: 161 YCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH 220
             F +L  +++ +C  + +L ++  APNL+ L+V     L +II   E     E      
Sbjct: 732 CSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINK-EKAHDGEKSGIVP 790

Query: 221 FLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI--- 277
           F   L  + L +L  L +I    +P P L+ I+V  CP L+KLPL+S S K+  N +   
Sbjct: 791 F-PKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIIT 849

Query: 278 RGSREWWDQLEWEDEDTKNVF 298
               EW  ++EWEDE TK  F
Sbjct: 850 HREMEWITRVEWEDEATKTRF 870

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 153/322 (47%), Gaps = 32/322 (9%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKIL------ 54
           M  L VLDLSYN D  +LPE I  L++L  L+LSNT I  +P G+K LK L  L      
Sbjct: 556 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTD 615

Query: 55  RLDVFSWFSTELVALHHNFCCA-----TTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
           RL   S  S  L         +      +VL  L+ L+N+ +++IT   V        Q 
Sbjct: 616 RLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAIT---VSAELISLDQR 672

Query: 110 SPKLQS--CVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTY------ 161
             KL S  C++   +  P+  S    M++L +L + +     I     +   +Y      
Sbjct: 673 LAKLISNLCIEGF-LQKPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPK 731

Query: 162 --CFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESH 219
             CF NL  L +  CH M DL WI  APNL  L + D + + EII   ++   + I    
Sbjct: 732 IPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITP-- 789

Query: 220 HFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLN---A 276
            FL  L  + L +LP L SI    +P P L T+ V +CP LRKLPLN+ S          
Sbjct: 790 -FL-KLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIH 847

Query: 277 IRGSREWWDQLEWEDEDTKNVF 298
           +    E  ++LEWED+DTKN F
Sbjct: 848 MYPPPEQENELEWEDDDTKNRF 869

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 157/318 (49%), Gaps = 30/318 (9%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  LAVLDLS+N  L ELPE I  L++L +LNLS+T IR L  GI+ LK +  L L+  S
Sbjct: 569 MPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTS 628

Query: 61  WF-STELVALHHNFCCATTV-------LAGLESLENIHDISITLCFVDTHAFCRFQSSPK 112
              S + ++  HN              L  ++ LE +  + I    +D  A  +F SS +
Sbjct: 629 KLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEILTTTIDPRA-KQFLSSHR 687

Query: 113 LQSCVKRLTV-ASPWFS------SLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRN 165
           L S  + L +  S  FS      SL    D L   EI+ CS+  I +     G    F +
Sbjct: 688 LMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKM-----GGICNFLS 742

Query: 166 LRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF-LSN 224
           L  +++ +C  + +L ++  AP L+ L V D + L +II   ++    E E+S       
Sbjct: 743 LVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKA---CEGEDSGIVPFPE 799

Query: 225 LMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNA----IRGS 280
           L  ++L  LP L +I  R +P   L+ I++ +CP LRKLPL+S S K   N      + S
Sbjct: 800 LKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDS 859

Query: 281 REWWDQLEWEDEDTKNVF 298
           R W   ++W DE TK  F
Sbjct: 860 R-WLKGVKWADEATKKRF 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 22/317 (6%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
           M  L VLDLS+N +L ELPE +  L+ L  LNLS T I+ LP G+K LK+L  L LD   
Sbjct: 543 MTGLVVLDLSFNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTS 602

Query: 58  -------VFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSS 110
                  + S  + +++ L H+      ++  ++ L+++ ++S+T+    +    R  S 
Sbjct: 603 NLQEVDVIASLLNLQVLRLFHSVSMDLKLMEDIQLLKSLKELSLTV--RGSSVLQRLLSI 660

Query: 111 PKLQSCVKRL-----TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFG---DQGRTYC 162
            +L S ++RL     T+      SL+      E L+I+ C++  I I +     +     
Sbjct: 661 QRLASSIRRLHLTETTIVDGGILSLNAIFSLCE-LDILGCNILEITIDWRCTIQREIIPQ 719

Query: 163 FRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL 222
           F+N+R +++  C ++ DL W+  AP L  L VS+C  + E+I   ++           F 
Sbjct: 720 FQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTSEQPF- 778

Query: 223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSRE 282
            NL  + L  LP L SI    +P P L+ + +  CP LR+LP NS S   +        +
Sbjct: 779 QNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVETIIEEQ 838

Query: 283 WWDQLEWEDEDTKNVFA 299
               +EWEDE TK  F+
Sbjct: 839 VIKIVEWEDEATKQRFS 855

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 143/324 (44%), Gaps = 33/324 (10%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N  L ELPE I +L +L + NLS T I +LP G+  LK L  L L+  S
Sbjct: 562 MPHLVVLDLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMS 621

Query: 61  -----------WFSTELVALHHNFCCATTVLAGLESLENIHDIS--ITLCFVDTHAFCRF 107
                      W    L           +++  L+ LE++  I+  I+   V     C  
Sbjct: 622 SLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQLLEHLEVITLDISSSLVAEPLLC-- 679

Query: 108 QSSPKLQSCVKRLTVASPWFSSLDF----RMDHLETLEIVDCSLESINI-------YFGD 156
             S +L  C+K +        S+       M +L  L I  C +  I I           
Sbjct: 680 --SQRLVECIKEVDFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNK 737

Query: 157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIE 216
              T CF NL  + +  CH + DL W+  APNL FL V   + + +II   ++   S   
Sbjct: 738 SPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSATI 797

Query: 217 ESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN--SGSAKNSL 274
                L  L + +L+    L  I  +A+  P LK I V  C  LRKLPL+  SG A   L
Sbjct: 798 VPFRKLETLHLFELR---GLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEEL 854

Query: 275 NAIRGSREWWDQLEWEDEDTKNVF 298
               G REW +++EWED+ T+  F
Sbjct: 855 VIYYGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 149/319 (46%), Gaps = 24/319 (7%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N  L  LPE I +L+ L +L+LS+T I  LPA ++ LK L  L L+   
Sbjct: 560 MRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMR 619

Query: 61  WFS-----TELVALH----HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSP 111
                   ++L +L      N      V++  E     H   +T+  V T    +   + 
Sbjct: 620 RLGSIAGISKLSSLRTLGLRNSNIMLDVMSVKELHLLEHLEILTIDIVSTMVLEQMIDAG 679

Query: 112 KLQSCVKRLTVASPWF-SSLDFR-----MDHLETLEIVDCSLESINI---YFGDQGRTYC 162
            L +C++ +++    +    D +     MD L +L + +C +  I I    +     + C
Sbjct: 680 TLMNCMQEVSIRCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSPC 739

Query: 163 FRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEES--HH 220
           F NL  + +  C  + DL W+  APN+ +L +   + L E+I   ++ G +E E+   H 
Sbjct: 740 FFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLHK 799

Query: 221 FL--SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS--GSAKNSLNA 276
            +    L ++ L  LP L SI   ++  P L  I V  CP LRKLPL+S  G+       
Sbjct: 800 IIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFVL 859

Query: 277 IRGSREWWDQLEWEDEDTK 295
                EW + +EW+DE TK
Sbjct: 860 QYKETEWIESVEWKDEATK 878

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  LAVLDLS+N  L ELPE I  L++L +LNL  T+I  LP GI+ LK +  L L+   
Sbjct: 567 MPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTR 626

Query: 61  WF-STELVALHHNFCCATTV-------LAGLESLENIHDISITLCFVDTHAFCRFQSSPK 112
              S   ++  HN              L  ++ LE +  + I    +D  A  +F SS +
Sbjct: 627 KLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEILTTTIDPRA-KQFLSSHR 685

Query: 113 LQSCVKRLTVASPWFSSLDFRM-------DHLETLEIVDCSLESINIYFGDQGRTYCFRN 165
           L S  + L +     SSL+  +       D L   +I  CS+  I +     G    F +
Sbjct: 686 LLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKM-----GGICNFLS 740

Query: 166 LRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF-LSN 224
           L  +++ +C  + +L ++  AP ++ L V   + L +II   ++    E EES       
Sbjct: 741 LVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKA---CEGEESGILPFPE 797

Query: 225 LMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNA--IRGS-R 281
           L  + L  LP L  I  R +P   L+ I++ +CP LRKLPL+S S K   N   IR    
Sbjct: 798 LNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDS 857

Query: 282 EWWDQLEWEDEDTKNVF 298
            W++ ++W DE TK  F
Sbjct: 858 RWFEGVKWADEATKKRF 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
255574524	881	Disease resistance protein RFL1, putativ	0.977	0.338	0.388	4e-45
255552975	1066	Disease resistance protein RPS5, putativ	0.967	0.276	0.376	2e-41
297743311	745	unnamed protein product [Vitis vinifera]	0.977	0.4	0.366	3e-41
359482617	1005	PREDICTED: disease resistance protein RP	0.977	0.296	0.366	3e-41
147852651	882	hypothetical protein VITISV_017542 [Viti	0.937	0.324	0.362	3e-39
359482619	1020	PREDICTED: disease resistance protein RP	0.977	0.292	0.352	6e-39
297743312	745	unnamed protein product [Vitis vinifera]	0.977	0.4	0.352	7e-39
147782477	1377	hypothetical protein VITISV_002420 [Viti	0.977	0.216	0.370	8e-39
147856932	761	hypothetical protein VITISV_019820 [Viti	0.977	0.391	0.349	3e-38
359482621	878	PREDICTED: disease resistance protein RP	0.977	0.339	0.355	4e-38

>gi|255574524|ref|XP_002528173.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532385|gb|EEF34180.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/322 (38%), Positives = 180/322 (55%), Gaps = 24/322 (7%)

Query: 2   HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD---- 57
            +L VLDLS+N DL +LP  +GKLINL HL+LS T I  LP  ++ LKNLK L +D    
Sbjct: 564 KSLQVLDLSHNEDLTKLPVEVGKLINLRHLDLSFTGINALPLEVRELKNLKTLLVDGTEM 623

Query: 58  -VFSWFSTELVALH------HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSS 110
            +     ++L++L        +     T+L GL+ L+ +  + I L   ++  +    +S
Sbjct: 624 LIPKVVISQLLSLQIFSKDIRHPSNEKTLLEGLDCLKRLICLGIILTKYESIEY--LLNS 681

Query: 111 PKLQSCVKRLTVAS-------PWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCF 163
            KLQSC+  LT+A           SS   RM  LE L+I  CSLE + I   D+G   CF
Sbjct: 682 TKLQSCINNLTLADCSDLHQLNISSSSMIRMRTLEMLDIRSCSLEELKILPDDKGLYGCF 741

Query: 164 RNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223
           + L  + ++ C  + +L W+  A  LQ L + DC  + EII   +    +E E      S
Sbjct: 742 KELSRVVIRKCP-IKNLTWLIYARMLQTLELDDCNSVVEIIA--DDIVETEDETCQKIFS 798

Query: 224 NLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREW 283
            L  +DL +L SL +IC +A+  PSL+ I+VY+CP LRKLP NS SA+ SL  IRG   W
Sbjct: 799 QLKRLDLSYLSSLHTICRQALSFPSLEKITVYECPRLRKLPFNSDSARTSLKEIRGKENW 858

Query: 284 WDQLEWEDEDTKNVFASKFLAL 305
           W+ L+W DE+ K +F+S+F+ L
Sbjct: 859 WNGLQW-DEEVKKIFSSRFVKL 879

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552975|ref|XP_002517530.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543162|gb|EEF44694.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 182/329 (55%), Gaps = 34/329 (10%)

Query: 3   ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF 62
            L VLDLS N  L ELPE IGKLINL +LNLS T I+E+   IK L  L+ L LD   + 
Sbjct: 564 GLKVLDLSSNHGLAELPEGIGKLINLHYLNLSWTAIKEMSTEIKKLTKLRCLVLDNTKYL 623

Query: 63  ---STELVA----------------LHHNFCCATTVLAGLESLENIHDISITLCFVDTHA 103
              + E+++                L++ F     +L  L+SL+N++D+SI L   D+  
Sbjct: 624 QLIAKEVISSLISLQRFSKLATIDFLYNEFLNEVALLDELQSLKNLNDLSINLSTSDSVE 683

Query: 104 FCRFQSSPKLQSCVKRLT-VASPWFSSLDF------RMDHLETLEIVDC-SLESINIYFG 155
             +F +SP LQ C++ LT V     +SLD       RM HLE LE+  C S+  + +   
Sbjct: 684 --KFFNSPILQGCIRELTLVECSEMTSLDISLSSMTRMKHLEKLELRFCQSISELRVRPC 741

Query: 156 -DQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE 214
             +     F +LR L +  C  + DL W+  AP L+ L + +C  ++E+I    + G  +
Sbjct: 742 LIRKANPSFSSLRFLHIGLCP-IRDLTWLIYAPKLETLELVNCDSVNEVINA--NCGNVK 798

Query: 215 IEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSL 274
           +E  H+  SNL  + L  LP+L  I  RA+  PSL+ + V +CP LRKLP +S S  N+L
Sbjct: 799 VEADHNIFSNLTKLYLVKLPNLHCIFHRALSFPSLEKMHVSECPKLRKLPFDSNS-NNTL 857

Query: 275 NAIRGSREWWDQLEWEDEDTKNVFASKFL 303
           N I+G R WWD L+W++E  K++ +SKF+
Sbjct: 858 NVIKGERSWWDGLQWDNEGLKDLLSSKFV 886

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743311|emb|CBI36178.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 176/338 (52%), Gaps = 40/338 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N +L ELP  IGKL  L +LNLS+T+IRELP  +K LKNL IL +D   
Sbjct: 382 MLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSHTRIRELPIELKNLKNLMILIMDGMK 441

Query: 61  WFS-------TELVALHHNFCCATTVLAGLE--------SLENIHDISITLCFVDTHAFC 105
                     + L++L       + + +G+E        SL +I +ISIT+C  +  +F 
Sbjct: 442 SLEIIPQDMISSLISLKLFSIYESNITSGVEETVLEELESLNDISEISITIC--NALSFN 499

Query: 106 RFQSSPKLQSCVKRL-------TVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGDQ 157
           + +SS KLQ C++ L        ++    SS   R +HL+ L I  C+ L+ + I    Q
Sbjct: 500 KLKSSHKLQRCIRHLHLHKGGDVISLDLSSSFFKRTEHLKQLYISHCNKLKEVKINVERQ 559

Query: 158 G-------------RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEII 204
           G             R   F  LR + V+ C  + DL W+  AP L+ LYV DC+++ E+I
Sbjct: 560 GIHNDLTLPNKIAAREEYFHTLRAVFVEHCSKLLDLTWLVYAPYLERLYVEDCELIEEVI 619

Query: 205 GTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264
              +     EI+E     S L  + L  LP L SI    +  PSL+ I VY+C GLR LP
Sbjct: 620 --RDDSEVCEIKEKLDIFSRLKSLKLNRLPRLKSIYQHPLLFPSLEIIKVYECKGLRSLP 677

Query: 265 LNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKF 302
            +S ++ NSL  I+G   WW+QL+W +E  K+ F   F
Sbjct: 678 FDSNTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYF 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482617|ref|XP_002280166.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 176/338 (52%), Gaps = 40/338 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N +L ELP  IGKL  L +LNLS+T+IRELP  +K LKNL IL +D   
Sbjct: 558 MLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSHTRIRELPIELKNLKNLMILIMDGMK 617

Query: 61  WFS-------TELVALHHNFCCATTVLAGLE--------SLENIHDISITLCFVDTHAFC 105
                     + L++L       + + +G+E        SL +I +ISIT+C  +  +F 
Sbjct: 618 SLEIIPQDMISSLISLKLFSIYESNITSGVEETVLEELESLNDISEISITIC--NALSFN 675

Query: 106 RFQSSPKLQSCVKRL-------TVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGDQ 157
           + +SS KLQ C++ L        ++    SS   R +HL+ L I  C+ L+ + I    Q
Sbjct: 676 KLKSSHKLQRCIRHLHLHKGGDVISLDLSSSFFKRTEHLKQLYISHCNKLKEVKINVERQ 735

Query: 158 G-------------RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEII 204
           G             R   F  LR + V+ C  + DL W+  AP L+ LYV DC+++ E+I
Sbjct: 736 GIHNDLTLPNKIAAREEYFHTLRAVFVEHCSKLLDLTWLVYAPYLERLYVEDCELIEEVI 795

Query: 205 GTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264
              +     EI+E     S L  + L  LP L SI    +  PSL+ I VY+C GLR LP
Sbjct: 796 --RDDSEVCEIKEKLDIFSRLKSLKLNRLPRLKSIYQHPLLFPSLEIIKVYECKGLRSLP 853

Query: 265 LNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKF 302
            +S ++ NSL  I+G   WW+QL+W +E  K+ F   F
Sbjct: 854 FDSNTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYF 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 171/334 (51%), Gaps = 48/334 (14%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N  + ELP  I  L++L +L+LS T+I+ELP  +K L NLK L L    
Sbjct: 557 MPNLRVLDLSDN-SITELPREISNLVSLRYLDLSFTEIKELPIELKNLGNLKCLLLSFMP 615

Query: 61  WFSTE---------LVALHHNFCCA-----TTVLAGLESLENIHDISITLCFVDTHAFCR 106
             S+          ++ +   F C        ++  LESL+ +HD+S+T+    T AF R
Sbjct: 616 QLSSVPEQLISSLLMLQVIDMFDCGICDGDEALVEELESLKYLHDLSVTI--TSTSAFKR 673

Query: 107 FQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDC-SLESINIYFGDQGRTYC--- 162
             SS KL+SC+ R                 L  L I +C SLE + I +  +G+      
Sbjct: 674 LLSSDKLRSCISR----------------RLRNLFISNCGSLEDLEIDWVGEGKKTVESN 717

Query: 163 -----------FRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPG 211
                      F +L  L+V  C  + DL W+  APNL+ L + DC  + E+IGT +S  
Sbjct: 718 YLNSKVSSHNSFHSLEALTVVSCSRLKDLTWVAFAPNLKVLTIIDCDQMQEVIGTRKSDE 777

Query: 212 TSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK 271
           ++E  E+    + L V+ L  LP L SI  +A+PL  L  I V +CP L+KLPLN+ SAK
Sbjct: 778 SAENGENLGPFAKLQVLHLVGLPQLKSIFWKALPLIYLNRIHVRNCPLLKKLPLNANSAK 837

Query: 272 NSLNAIRGSREWWDQLEWEDEDTKNVFASKFLAL 305
                I G  EWW+++EWEDE T N F   F+ +
Sbjct: 838 GHRIVISGQTEWWNEVEWEDEATHNAFLPCFVPI 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482619|ref|XP_003632794.1| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 172/338 (50%), Gaps = 40/338 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N +L ELP  IGKL  L +LNLS T+IRELP  +K LKNL IL ++   
Sbjct: 558 MLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSVTRIRELPIELKNLKNLMILIMNGMK 617

Query: 61  WFS-------TELVALHHNFCCATTVLAGLE--------SLENIHDISITLCFVDTHAFC 105
                     + L++L       + + +G+E        SL +I +ISIT+C  +  +F 
Sbjct: 618 SLEIIPQDMISSLISLKLFSIFESNITSGVEETVLEELESLNDISEISITIC--NALSFN 675

Query: 106 RFQSSPKLQSCVKRL-------TVASPWFSSLDFRMDHLETLEIVDC-SLESINIYFGDQ 157
           + +SS KLQ C++ L        ++    SS   R +HL  L I  C  L+ + I    +
Sbjct: 676 KLKSSRKLQRCIRNLFLHKWGDVISLELSSSFFKRTEHLRVLYISHCDKLKEVKINVERE 735

Query: 158 G-------------RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEII 204
           G             R   F  LR + ++ C  + DL W+  AP L+ L V DC+ + E+I
Sbjct: 736 GIHNDMTLPNKIAAREEYFHTLRKVLIEHCSKLLDLTWLVYAPYLEHLRVEDCESIEEVI 795

Query: 205 GTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264
             ++     E++E     S L  + L  LP L SI    +  PSL+ I VY+C GLR LP
Sbjct: 796 --HDDSEVGEMKEKLDIFSRLKYLKLNRLPRLKSIYQHLLLFPSLEIIKVYECKGLRSLP 853

Query: 265 LNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKF 302
            +S ++ NSL  I+G   WW+QL+W +E  K+ F   F
Sbjct: 854 FDSDTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYF 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743312|emb|CBI36179.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 172/338 (50%), Gaps = 40/338 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  L VLDLS N +L ELP  IGKL  L +LNLS T+IRELP  +K LKNL IL ++   
Sbjct: 382 MLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSVTRIRELPIELKNLKNLMILIMNGMK 441

Query: 61  WFS-------TELVALHHNFCCATTVLAGLE--------SLENIHDISITLCFVDTHAFC 105
                     + L++L       + + +G+E        SL +I +ISIT+C  +  +F 
Sbjct: 442 SLEIIPQDMISSLISLKLFSIFESNITSGVEETVLEELESLNDISEISITIC--NALSFN 499

Query: 106 RFQSSPKLQSCVKRL-------TVASPWFSSLDFRMDHLETLEIVDC-SLESINIYFGDQ 157
           + +SS KLQ C++ L        ++    SS   R +HL  L I  C  L+ + I    +
Sbjct: 500 KLKSSRKLQRCIRNLFLHKWGDVISLELSSSFFKRTEHLRVLYISHCDKLKEVKINVERE 559

Query: 158 G-------------RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEII 204
           G             R   F  LR + ++ C  + DL W+  AP L+ L V DC+ + E+I
Sbjct: 560 GIHNDMTLPNKIAAREEYFHTLRKVLIEHCSKLLDLTWLVYAPYLEHLRVEDCESIEEVI 619

Query: 205 GTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264
             ++     E++E     S L  + L  LP L SI    +  PSL+ I VY+C GLR LP
Sbjct: 620 --HDDSEVGEMKEKLDIFSRLKYLKLNRLPRLKSIYQHLLLFPSLEIIKVYECKGLRSLP 677

Query: 265 LNSGSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKF 302
            +S ++ NSL  I+G   WW+QL+W +E  K+ F   F
Sbjct: 678 FDSDTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYF 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782477|emb|CAN75117.1| hypothetical protein VITISV_002420 [Vitis vinifera]

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 173/329 (52%), Gaps = 31/329 (9%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  + VLDLSYN +LVELP  I +L +L +LNL  T I+ +P  +K L  L+ L LD   
Sbjct: 558 MPVIRVLDLSYNGNLVELPLEICRLESLEYLNLIRTNIKRMPIELKNLTKLRCLMLDYVE 617

Query: 61  WFST------------ELVALHHNFCC------ATTVLAGLESLENIHDISITLCFVDTH 102
                           ++  + H F        A  VL  +E LE +  ISI+L  V   
Sbjct: 618 GLEVIPSNVISCLLNLQMFRMMHRFFSDIMEYDAVGVLQEMECLEYLSWISISLFTVP-- 675

Query: 103 AFCRFQSSPKLQSCVKRLT-VASPWFSSLDFRMDHLETLEIVDCS----LESINIYFG-D 156
           A  ++ +S  LQ  ++ L  +A P    ++  +  L+TL ++       LE + I  G  
Sbjct: 676 AVQKYLTSLMLQKRIRELNLMACPGLKVVELPLSTLQTLTVLGFDRCDDLERVKINMGLS 735

Query: 157 QGR--TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE 214
           +G      F NL  + +  C F+ DL W+  AP+L+ L V D   + EIIG+ E  G SE
Sbjct: 736 RGHISNSNFHNLVKVFILGCRFL-DLTWLIYAPSLELLAVRDSWEMEEIIGSDEY-GDSE 793

Query: 215 IEESH-HFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNS 273
           I++ +    S L+ + L +LP+L SI  R +P PSLK I V  CP LRKLPLNS SA N+
Sbjct: 794 IDQQNLSIFSRLVTLWLDYLPNLKSIYKRPLPFPSLKEIRVLHCPNLRKLPLNSNSATNT 853

Query: 274 LNAIRGSREWWDQLEWEDEDTKNVFASKF 302
           L AI G   WW++LEWED++ K +F   F
Sbjct: 854 LKAIVGESSWWEELEWEDDNLKRIFIPYF 882

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856932|emb|CAN80756.1| hypothetical protein VITISV_019820 [Vitis vinifera]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 37/335 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  + VLDLS N++L ELP +IG+L +L +LNL++T+IRELP  +K LKNL ILRLD   
Sbjct: 402 MPLIRVLDLSANYNLSELPTSIGELNDLRYLNLTSTRIRELPIELKNLKNLMILRLDYLQ 461

Query: 61  WFST-------ELVALHHNFCCATTVLAGLESL-------ENIHDISITLCFVDTHAFCR 106
              T        L +L       T + +G+E+L        +I+DI IT+      +  +
Sbjct: 462 SLETIPQDLISNLTSLKLFSMWNTNIFSGVETLLEELESLNDINDIRITIS--SALSLNK 519

Query: 107 FQSSPKLQSCVKRL-------TVASPWFSSLDFRMDHLETLEIVDC-----SLE---SIN 151
            + S KLQ C++ L        +     SS   RM+HL  LE++ C     S+E   + N
Sbjct: 520 LKRSHKLQRCIRSLQLHKRGDVITLELSSSFLKRMEHLLELEVLHCDDVKISMEREMTQN 579

Query: 152 IYFG----DQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTY 207
              G    +  R   F +LR++++++C  + DL W+  A  L+ LYV DC+ +  ++  +
Sbjct: 580 NVTGLSNYNVAREQYFYSLRNIAIQNCSKLLDLTWVVYASCLEVLYVEDCKSIELVL--H 637

Query: 208 ESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS 267
              G  EI E     S L  + L  LP L SI    +  PSL+ I VY C  LR LP +S
Sbjct: 638 HDHGAYEIVEKLDVFSRLKCLKLNRLPRLKSIYQHPLLFPSLEIIKVYACKSLRSLPFDS 697

Query: 268 GSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKF 302
            ++ N+L  I+G   WW++L+W+DE  K+ F   F
Sbjct: 698 NTSNNNLKKIKGGTNWWNRLKWKDETIKDCFTPYF 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482621|ref|XP_002280315.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 175/335 (52%), Gaps = 37/335 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           M  + VLDLS N++L ELP +IG+L +L +LNL++T+IRELP  +K LKNL ILRLD   
Sbjct: 519 MPLIRVLDLSANYNLSELPTSIGELNDLRYLNLTSTRIRELPIELKNLKNLMILRLDHLQ 578

Query: 61  WFST-------ELVALHHNFCCATTVLAGLESL-------ENIHDISITLCFVDTHAFCR 106
              T        L +L       T + +G+E+L        NI++I IT+      +  +
Sbjct: 579 SLETIPQDLISNLTSLKLFSMWNTNIFSGVETLLEELESLNNINEIGITIS--SALSLNK 636

Query: 107 FQSSPKLQSCVKRLT------VASPWFSSLDF-RMDHLETLEIVDC-----SLES----- 149
            + S KLQ C++ L       V +   SSL   RM+HL  LE+  C     S+E      
Sbjct: 637 LKRSHKLQRCIRHLQLHKWGDVITLELSSLFLKRMEHLIDLEVDHCDDVKVSMEREMKQN 696

Query: 150 --INIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTY 207
             I +   +  R     +LR++ +K+C  + DL W+  A  L+ LYV DC+ +  ++  +
Sbjct: 697 DVIGLSNYNVAREQYIYSLRYIGIKNCSKLLDLTWVIYASCLEELYVEDCESIELVL--H 754

Query: 208 ESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS 267
              G  EI E     S L  + L  LP L SI    +  PSL+ I VYDC  LR LP +S
Sbjct: 755 HDHGAYEIVEKLDIFSRLKCLKLNRLPRLKSIYQHPLLFPSLEIIKVYDCKSLRSLPFDS 814

Query: 268 GSAKNSLNAIRGSREWWDQLEWEDEDTKNVFASKF 302
            ++ N+L  I+G   WW++L+W+DE  K+ F   F
Sbjct: 815 NTSNNNLKKIKGGTNWWNRLKWKDETIKDCFTPYF 849

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.845	0.338	0.335	3.7e-26
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.868	0.279	0.310	3.7e-24
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.872	0.297	0.336	4e-23
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.891	0.302	0.308	1.8e-22
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.888	0.306	0.318	1.4e-20
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.859	0.296	0.305	8.1e-20
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.819	0.280	0.276	1.7e-16
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.826	0.280	0.304	7.2e-14
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.809	0.279	0.3	8.3e-13
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.859	0.270	0.318	4e-12

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 98/292 (33%), Positives = 141/292 (48%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL---- 56
             M  L VLDLSYN D  +LPE I  L++L  L+LSNT I++LP G+K LK L  L L    
Sbjct:   445 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNLAYTV 504

Query:    57 ------DVFSWFSTELVALHHNFCCA-TTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
                    +    S  L+ L  +      +VL  L+ L+N+  ++ITL             
Sbjct:   505 RLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQKLQNLQHLAITLS-------AELSL 557

Query:   110 SPKLQSCVKRLTVAS----PWFSSLDFRMDHLETLEI-------VDC-SLESINIYFGDQ 157
             + +L + +  L +      P+  S    M++L +L +       + C   E+ + Y    
Sbjct:   558 NQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWVKNSYFSEIKCRESETASSYLRIN 617

Query:   158 GRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE 217
              +  CF NL  L +  CH + DL WI  APNL +LY+ D + + EII   ++   + I  
Sbjct:   618 PKIPCFTNLSRLGLSKCHSIKDLTWILFAPNLVYLYIEDSREVGEIINKEKATNLTSITP 677

Query:   218 SHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGS 269
                FL    +I L +LP L SI    +  P L  I V DCP LRKLPLN+ S
Sbjct:   678 ---FLKLERLI-LYNLPKLESIYWSPLHFPRLLIIHVLDCPKLRKLPLNATS 725

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 89/287 (31%), Positives = 144/287 (50%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
             M  L VLDLS+N +L ELPE +  L+ L  LNLS T I+ LP G+K LK+L  L LD   
Sbjct:   543 MTGLVVLDLSFNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIHLDLDYTS 602

Query:    58 -------VFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSS 110
                    + S  + +++ L H+      ++  ++ L+++ ++S+T+    +    R  S 
Sbjct:   603 NLQEVDVIASLLNLQVLRLFHSVSMDLKLMEDIQLLKSLKELSLTVR--GSSVLQRLLSI 660

Query:   111 PKLQSCVKRL-----TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC--- 162
              +L S ++RL     T+      SL+      E L+I+ C++  I I +    +      
Sbjct:   661 QRLASSIRRLHLTETTIVDGGILSLNAIFSLCE-LDILGCNILEITIDWRCTIQREIIPQ 719

Query:   163 FRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL 222
             F+N+R +++  C ++ DL W+  AP L  L VS+C  + E+I   ++           F 
Sbjct:   720 FQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTSEQPF- 778

Query:   223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGS 269
              NL  + L  LP L SI    +P P L+ + +  CP LR+LP NS S
Sbjct:   779 QNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSES 825

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 98/291 (33%), Positives = 145/291 (49%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
             M  LAVLDLS+N  L ELPE I  L++L +LNLS+T IR L  GI+ LK +  L L+  S
Sbjct:   569 MPKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTS 628

Query:    61 WF-STELVALHHNFCCATTV-------LAGLESLENIHDISITLCFVDTHAFCRFQSSPK 112
                S + ++  HN              L  ++ LE +  + I    +D  A  +F SS +
Sbjct:   629 KLESIDGISSLHNLKVLKLYGSRLPWDLNTVKELETLEHLEILTTTIDPRAK-QFLSSHR 687

Query:   113 LQSCVKRLTV-ASPWFS------SLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRN 165
             L S  + L +  S  FS      SL    D L   EI+ CS+  I +     G    F +
Sbjct:   688 LMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKM-----GGICNFLS 742

Query:   166 LRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF-LSN 224
             L  +++ +C  + +L ++  AP L+ L V D + L +II   ++    E E+S       
Sbjct:   743 LVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKA---CEGEDSGIVPFPE 799

Query:   225 LMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLN 275
             L  ++L  LP L +I  R +P   L+ I++ +CP LRKLPL+S S K   N
Sbjct:   800 LKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGEN 850

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 90/292 (30%), Positives = 151/292 (51%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
             M  LAVLDLS N+ L ELP  I +L++L +LNLS+T IR LP G++ LK L  L L+  S
Sbjct:   560 MPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTS 619

Query:    61 WFSTEL-VALHHN----------FCCATTVLAGLESLENIHDISITL--CFVDTHAFCRF 107
                + + ++  HN          +      +  LE+LE++  ++ T+  C + T    +F
Sbjct:   620 QLGSMVGISCLHNLKVLKLSGSSYAWDLDTVKELEALEHLEVLTTTIDDCTLGTD---QF 676

Query:   108 QSSPKLQSCVKRLTVASPWFSSLDF-RMDHLETLE-IVDCSLESINIYFGDQGRTYCFRN 165
              SS +L SC++ L +++    + +  R+    T++ + + ++E  +      GR   F +
Sbjct:   677 LSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIKMGRICSFSS 736

Query:   166 LRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL 225
             L  +++ +C  + +L ++  APNL+ L+V     L +II   E     E      F   L
Sbjct:   737 LIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINK-EKAHDGEKSGIVPF-PKL 794

Query:   226 MVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI 277
               + L +L  L +I    +P P L+ I+V  CP L+KLPL+S S K+  N +
Sbjct:   795 NELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGL 846

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 91/286 (31%), Positives = 142/286 (49%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
             M  LAVLDLS+N  L ELPE I  L++L +LNL  T+I  LP GI+ LK +  L L+   
Sbjct:   567 MPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTR 626

Query:    61 WFS--TELVALHHN-----FCCATTV-LAGLESLENIHDISITLCFVDTHAFCRFQSSPK 112
                  T + +LH+      F       L  ++ LE +  + I    +D  A  +F SS +
Sbjct:   627 KLESITGISSLHNLKVLKLFRSRLPWDLNTVKELETLEHLEILTTTIDPRAK-QFLSSHR 685

Query:   113 LQSCVKRLTVASPWFSSLDFRMDHLE--TLEIVDCSLESINIYFGDQGRTYCFRNLRHLS 170
             L S  + L +     SSL+  ++ L   T ++ +  ++S +I     G    F +L  ++
Sbjct:   686 LLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVN 745

Query:   171 VKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF-LSNLMVID 229
             + +C  + +L ++  AP ++ L V   + L +II   ++    E EES       L  + 
Sbjct:   746 IFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKA---CEGEESGILPFPELNFLT 802

Query:   230 LQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLN 275
             L  LP L  I  R +P   L+ I++ +CP LRKLPL+S S K   N
Sbjct:   803 LHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGEN 848

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 8.1e-20, P = 8.1e-20
 Identities = 87/285 (30%), Positives = 138/285 (48%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
             M  L VLDLS+N +L  LP+ I +L++L +L+LS + I  LP G+  LK  K++ L++ S
Sbjct:   564 MPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLSYSSIGRLPVGLLKLK--KLMHLNLES 621

Query:    61 WFSTELVA-LHHNFCCATTVLAGL---------ESLENIHDISI-TLCFVDTHAFCRFQS 109
                 E V+ + H     T  L  L         E LE + ++ + T+  + + A  +   
Sbjct:   622 MLCLESVSGIDHLSNLKTVRLLNLRMWLTISLLEELERLENLEVLTIEIISSSALEQLLC 681

Query:   110 SPKLQSCVKRLTVASPWFSSLDF----RMDHLETLEIVDCSLESINIYFGDQGRTYCFRN 165
             S +L  C+++++V      S+       +  L  + I  C +  I I       + CF N
Sbjct:   682 SHRLVRCLQKVSVKYLDEESVRILTLPSIGDLREVFIGGCGMRDIIIERNTSLTSPCFPN 741

Query:   166 LRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL 225
             L  + +  C+ + DL W+  APNL  L V + + + EII + E   T++I         L
Sbjct:   742 LSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEII-SQEKASTADIVP----FRKL 796

Query:   226 MVIDLQHLPSLTSICCRAVPLPSLKTISVYD-CPGLRKLPLNSGS 269
               + L  LP L SI    +P P L  I+V + C  L KLPL+S S
Sbjct:   797 EYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQS 841

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 77/278 (27%), Positives = 126/278 (45%)

Query:     3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF 62
             AL  LDLS+  ++  LP  +  L  L HLNL   +     AGI  L +L+ L L      
Sbjct:   586 ALRYLDLSHT-NIEGLPACLQDLKTLIHLNLECMRRLGSIAGISKLSSLRTLGLR----- 639

Query:    63 STELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV 122
                    + N       +  L  LE++  ++I +  V T    +   +  L +C++ +++
Sbjct:   640 -------NSNIMLDVMSVKELHLLEHLEILTIDI--VSTMVLEQMIDAGTLMNCMQEVSI 690

Query:   123 ASPWFSS-LDFR-----MDHLETLEIVDCSLESINIY---FGDQGRTYCFRNLRHLSVKD 173
                 +    D +     MD L +L + +C +  I I    +     + CF NL  + +  
Sbjct:   691 RCLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFFNLSQVIIHV 750

Query:   174 CHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEES--HHFL--SNLMVID 229
             C  + DL W+  APN+ +L +   + L E+I   ++ G +E E+   H  +    L ++ 
Sbjct:   751 CSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILH 810

Query:   230 LQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS 267
             L  LP L SI   ++  P L  I V  CP LRKLPL+S
Sbjct:   811 LSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDS 848

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 91/299 (30%), Positives = 129/299 (43%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
             M  L VLDLSYN D  +LPE I  L++L  L+LSNT I  +P G+K LK L  L L    
Sbjct:   556 MQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTD 615

Query:    58 -------VFSWFSTELVALHHNFCCA-TTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
                    +    S  L+ L  +      +VL  L+ L+N+ +++IT   V        Q 
Sbjct:   616 RLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQQLQNLQELAIT---VSAELISLDQR 672

Query:   110 SPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHL 169
               KL   +  L +    F    F +  L ++E +  SL   N YF +     C    R  
Sbjct:   673 LAKL---ISNLCIEG--FLQKPFDLSFLASMENLS-SLRVENSYFSE---IKC----RES 719

Query:   170 SVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE--IEESHHF------ 221
               +  +   + K I C  NL  L +  C  + ++     +P      IE+S         
Sbjct:   720 ETESSYLRINPK-IPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINK 778

Query:   222 --LSNLMVID---------LQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGS 269
                +NL  I          L +LP L SI    +P P L T+ V +CP LRKLPLN+ S
Sbjct:   779 EKATNLTSITPFLKLEWLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATS 837

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 84/280 (30%), Positives = 127/280 (45%)

Query:     3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL-DVFSW 61
             +L  LDLS  + +  LP  + +L  L HL L  T+  E  +GI YL +L+ LRL D  + 
Sbjct:   588 SLQYLDLSGTY-IERLPHGLHELRKLVHLKLERTRRLESISGISYLSSLRTLRLRDSKTT 646

Query:    62 FSTELVALHHNFCCATTVLAGLESLENIH-DISITLCFVDTHAFCRFQSSPKLQSCVKRL 120
               T L+            L  LE LE I  DIS  L       FC     P++  C++ +
Sbjct:   647 LDTGLMK----------ELQLLEHLELITTDISSGLV---GELFCY----PRVGRCIQHI 689

Query:   121 TVASPWF---SSLDF----RMDHLETLEIVDCSLESINIYFGDQGRTYC---FRNLRHLS 170
              +   W     S+       + +L  + I +C +  I I      +      F NL ++ 
Sbjct:   690 YIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVR 749

Query:   171 VKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL 230
             ++ C  + DL W+  APNL  L V  C+ L +II   +    S +E+       L  ++L
Sbjct:   750 IEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIIS--KEKAASVLEKEILPFQKLECLNL 807

Query:   231 QHLPSLTSICCRAVPLPSLKTISVYD-CPGLRKLPLNSGS 269
               L  L SI   A+P   L+ + + + CP LRKLPL+S S
Sbjct:   808 YQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKS 847

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 93/292 (31%), Positives = 133/292 (45%)

Query:     1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKIL------ 54
             M  L VLDLS+N D  ELPE I  L++L +L+LS T+I +LP G+K LK L  L      
Sbjct:   560 MQKLVVLDLSHNPDFNELPEQISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTE 619

Query:    55 RLDVFSWFSTEL----VALHH-NFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
             RL   S  S  L    ++L   N     +VL  L+ LEN+ D+ IT            Q 
Sbjct:   620 RLCSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRIT---ESAELISLDQR 676

Query:   110 SPKLQSCVKRLT--VASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLR 167
               KL S V R+   +  P+  S    M++L  L + +     INI   +      +    
Sbjct:   677 LAKLIS-VLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYL--- 732

Query:   168 HLSVK-DCHF-MTDLKWIRC--APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223
             H++ K  C   +T L  ++C    +L ++  +   V  +I  + E       E++ +  S
Sbjct:   733 HINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEIINKEKAINLTS 792

Query:   224 ------NLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGS 269
                    L  + L  LP L SI    +P P L  I V  CP LRKLPLN+ S
Sbjct:   793 IITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLNATS 844

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 4   LAVLDLSYNFDLVELPEAIGKL-INLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           L  LDL  N ++ ++P  IG L  NL  L+LS+ KI  LP+ ++ L NLK L L 
Sbjct: 118 LTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.68
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.54
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.22
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.04
KOG4341	483	consensus F-box protein containing LRR [General fu	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG4341	483	consensus F-box protein containing LRR [General fu	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.77
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
PLN03150	623	hypothetical protein; Provisional	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PLN03150	623	hypothetical protein; Provisional	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.24
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.62
smart00370	26	LRR Leucine-rich repeats, outliers.	91.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.09
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.87
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.06

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=2.3e-21  Score=173.04  Aligned_cols=229  Identities=19%  Similarity=0.239  Sum_probs=138.8

Q ss_pred             ccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      +-+|++|+| .+..+|.. +-++..|-+||+|+|++..+|+.+.++.+|++|.+++|++              ..+-...
T Consensus       128 ~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL--------------~hfQLrQ  192 (1255)
T KOG0444|consen  128 SIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL--------------NHFQLRQ  192 (1255)
T ss_pred             cEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh--------------hHHHHhc
Confidence            344555555 44555433 4455555555555555555555555555555555555543              2222334


Q ss_pred             ccCccCccceeEEEeecCcccc-cccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCCC
Q 044279           83 LESLENIHDISITLCFVDTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      +..|++|+.|.+++.+.+...+ +++..+    .+|..+++++|.+..+|   ..+++|+.|++++|.++++....    
T Consensus       193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~----  264 (1255)
T KOG0444|consen  193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE----  264 (1255)
T ss_pred             CccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH----
Confidence            4445555555555422222111 112222    23666666666666666   55666677777766666665443    


Q ss_pred             cccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                        ..-.+|++|+++.| .++.+| .+..+++|+.|.+.+|..           ...+++..+|.+.+|+.+..+++ .++
T Consensus       265 --~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL-----------~FeGiPSGIGKL~~Levf~aanN-~LE  329 (1255)
T KOG0444|consen  265 --GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL-----------TFEGIPSGIGKLIQLEVFHAANN-KLE  329 (1255)
T ss_pred             --HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc-----------cccCCccchhhhhhhHHHHhhcc-ccc
Confidence              33456667777766 666555 455667777777666543           45566678888999999988887 888


Q ss_pred             eecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279          238 SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      -+|.+.+.|++|+.|.+ +|+.+..+|.+|..++
T Consensus       330 lVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~  362 (1255)
T KOG0444|consen  330 LVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLP  362 (1255)
T ss_pred             cCchhhhhhHHHHHhcc-cccceeechhhhhhcC
Confidence            88888888899999998 5778888888887775

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=6.9e-19  Score=175.29  Aligned_cols=174  Identities=18%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      ++|++|++++|..-+.+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+              ....+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--------------~~~~p  205 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL--------------VGQIP  205 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC--------------cCcCC
Confidence            34455555555211244555555566666666555543 4555555566666666655543              22344


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecce-eccccc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLES-INIYFG  155 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~~-~~~~~~  155 (305)
                      ..+..+++|+.|++.++.........+..+    .+|++|+++.+.+. ..+   ..+++|+.|++++|.+.. ++..+ 
T Consensus       206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-  280 (968)
T PLN00113        206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-  280 (968)
T ss_pred             hHHcCcCCccEEECcCCccCCcCChhHhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-
Confidence            455555555555555421111111112222    22555555533222 222   445555555555555332 22121 


Q ss_pred             CCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEecccc
Q 044279          156 DQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       156 ~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~  199 (305)
                           ..+++|+.|++++|.....+| .+.++++|+.|++++|..
T Consensus       281 -----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        281 -----FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             -----hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence                 344555555555552222222 234455555555555443

>PLN03210 Resistant to P

Probab=99.78  E-value=2.3e-18  Score=172.87  Aligned_cols=125  Identities=22%  Similarity=0.267  Sum_probs=85.5

Q ss_pred             CCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC---
Q 044279          135 DHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP---  210 (305)
Q Consensus       135 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---  210 (305)
                      ++|+.|++++|. +..+|..+      ..+++|+.|++++|..++.+|....+++|++|++++|..+..++......   
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L  851 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSI------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDL  851 (1153)
T ss_pred             ccchheeCCCCCCccccChhh------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEe
Confidence            355666666655 44555443      56777888888877777777654467778888888877666554321111   


Q ss_pred             -----CCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          211 -----GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       211 -----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                           .-..++..+..+++|+.|++++|..++.++.....+++|+.+++++|+.+..++.
T Consensus       852 ~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        852 NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             ECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence                 1123444667788899999999988888888777888899999999988876543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=1.4e-18  Score=173.10  Aligned_cols=247  Identities=19%  Similarity=0.198  Sum_probs=149.0

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++|++|++++|...+.+|..++++++|++|++++|.+. .+|..++.+++|++|++++|.+              ....
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--------------~~~~  228 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--------------SGEI  228 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc--------------CCcC
Confidence            578999999999444578888999999999999999876 7888899999999999999875              3456


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecceeccccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLESINIYFG  155 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~~~~~~~~  155 (305)
                      +..+..+++|+.|++..|.........+..+    .+|+.|+++.+.+. ..+   ..+++|+.|++++|.+....... 
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-  303 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-  303 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-
Confidence            6777888888888887743222222223222    23777777744332 232   55667777777777644322222 


Q ss_pred             CCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCC------------CCcccccccccc
Q 044279          156 DQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESP------------GTSEIEESHHFL  222 (305)
Q Consensus       156 ~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~  222 (305)
                          +..+++|+.|++.+|......+ .+..+++|+.|++++|.....++......            -....+..+..+
T Consensus       304 ----~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~  379 (968)
T PLN00113        304 ----VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS  379 (968)
T ss_pred             ----HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence                1456667777777663322332 35566667777776655433333200000            000011133344


Q ss_pred             CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279          223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA  270 (305)
Q Consensus       223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  270 (305)
                      ++|+.|++++|.-...++.....+++|+.|++++|.....+|..+..+
T Consensus       380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  427 (968)
T PLN00113        380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL  427 (968)
T ss_pred             CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence            555555555553223344444567777888877775544555554444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=1.7e-19  Score=159.80  Aligned_cols=246  Identities=17%  Similarity=0.124  Sum_probs=144.0

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEE------------
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELV------------   67 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~------------   67 (305)
                      .++++|+|++| .++.+.. .+..+.+|..|.++.|++..+|.. |+++++|+.|++..|++..++.+            
T Consensus       173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            36778888888 7777653 377777888888888888888765 67788888888888876433111            


Q ss_pred             EeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEe
Q 044279           68 ALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIV  143 (305)
Q Consensus        68 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~  143 (305)
                      ++-+++..  -.-..+..|.++++|++..+......-..+.++..    |+.|+++.|.++.+.    ..+++|++|+++
T Consensus       252 lqrN~I~k--L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~----L~~L~lS~NaI~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  252 LQRNDISK--LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS----LEQLDLSYNAIQRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hhhcCccc--ccCcceeeecccceeecccchhhhhhcccccccch----hhhhccchhhhheeecchhhhcccceeEecc
Confidence            11111100  00112334444445555441111111112333322    666666666555544    455667777776


Q ss_pred             ceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccc
Q 044279          144 DCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF  221 (305)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (305)
                      .|.++.++...+     ..+..|+.|+|+.| +++.+.  .+..+++|++|+|+.|..--.+...         ...+.+
T Consensus       326 ~N~i~~l~~~sf-----~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDa---------a~~f~g  390 (873)
T KOG4194|consen  326 SNRITRLDEGSF-----RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA---------AVAFNG  390 (873)
T ss_pred             ccccccCChhHH-----HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc---------hhhhcc
Confidence            666666665543     55666666777666 555553  3456677777777775422111110         124567


Q ss_pred             cCccceeeccCcccCceecCCCC-CCCCCceEEeeCCCCCCCCCCCCccc
Q 044279          222 LSNLMVIDLQHLPSLTSICCRAV-PLPSLKTISVYDCPGLRKLPLNSGSA  270 (305)
Q Consensus       222 ~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~  270 (305)
                      +++|+.|.+.++ +++.++.... +++.|++|++.+++....-|..+.+.
T Consensus       391 l~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  391 LPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             chhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            888888888887 7777776543 68888888887776554445544443

>PLN03210 Resistant to P

Probab=99.73  E-value=2.8e-17  Score=165.18  Aligned_cols=47  Identities=23%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             cccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          218 SHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       218 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      .++++++|+.|+|++|..++.+|... .+++|+.|++++|..++.+|.
T Consensus       797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence            55667777777777776666666543 566677777777766655543

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.68  E-value=3e-17  Score=158.14  Aligned_cols=282  Identities=29%  Similarity=0.433  Sum_probs=189.1

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      ||.|++||+++|....++|..|+.+.|||||+++.+.++.+|.++++++.|++|++..+....              ..+
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~--------------~~~  635 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE--------------SIP  635 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc--------------ccc
Confidence            689999999999888999999999999999999999999999999999999999999876321              112


Q ss_pred             ccccCccCccceeEEEee------------------------cCcccccccccCCCccccceEEEEEcCCCc-ccc--cc
Q 044279           81 AGLESLENIHDISITLCF------------------------VDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD--FR  133 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~------------------------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~--~~  133 (305)
                      .....+.+|+.|.+...-                        ......+.+..+..+....+.+.+.+.... ...  ..
T Consensus       636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~  715 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS  715 (889)
T ss_pred             chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc
Confidence            223335555555544410                        111111222222221112222222211111 111  77


Q ss_pred             CCCccEEEEeceecceecccccCCCcccC-CCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCC
Q 044279          134 MDHLETLEIVDCSLESINIYFGDQGRTYC-FRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGT  212 (305)
Q Consensus       134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  212 (305)
                      +.+|+.|.+.+|.+.++............ ++++..+.+.+|....++.|..-.|+|+.|.+..|..++++++..+....
T Consensus       716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~  795 (889)
T KOG4658|consen  716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE  795 (889)
T ss_pred             ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh
Confidence            88999999999986555443322111122 66788888888888888877777899999999999999988875443111


Q ss_pred             ccccccccccCcccee-eccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc-Cc-CceEe-CCcccccccc
Q 044279          213 SEIEESHHFLSNLMVI-DLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK-NS-LNAIR-GSREWWDQLE  288 (305)
Q Consensus       213 ~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~-~~~i~-~~~~~~~~l~  288 (305)
                      ..  ....-+.++..+ .+.+.+.+.++.+....++.|+.+.+..||+++.+|....... .+ -.... ....|...+.
T Consensus       796 l~--~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~  873 (889)
T KOG4658|consen  796 LK--ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVY  873 (889)
T ss_pred             cc--cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEE
Confidence            00  012345566666 4666667777777777788899999999999999999876655 22 23333 3555788899


Q ss_pred             cCcccccccc
Q 044279          289 WEDEDTKNVF  298 (305)
Q Consensus       289 ~~~~~~~~~~  298 (305)
                      |.+.+++..+
T Consensus       874 ~~~~~~~~~~  883 (889)
T KOG4658|consen  874 WEDELTKLRF  883 (889)
T ss_pred             ehhhhhhhhc
Confidence            9999888766

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.68  E-value=6.2e-19  Score=157.70  Aligned_cols=245  Identities=19%  Similarity=0.226  Sum_probs=176.8

Q ss_pred             CCcccEEeCCCCCCcc--ccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec---------eEEEe
Q 044279            1 MHALAVLDLSYNFDLV--ELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST---------ELVAL   69 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~---------~~~l~   69 (305)
                      +|.||.+.++.| .++  .+|..+.++..|..||+|+|++.++|.++...+++..|++++|.+..+         +++..
T Consensus        77 Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   77 LPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             chhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            356666777776 544  567777777777777777777777777777777777777777776554         11111


Q ss_pred             eccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-c-CCCcccc---ccCCCccEEEEec
Q 044279           70 HHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-S-PWFSSLD---FRMDHLETLEIVD  144 (305)
Q Consensus        70 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~-~~~~~~~---~~~~~L~~L~l~~  144 (305)
                      ..+....+.+|+.+.++.+|+.|.+++++.....+..+.++..    |+.|.++ + ..+..+|   ..+.+|..++++.
T Consensus       156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts----L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS----LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh----hhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            1111226778889999999999999885545555666666655    8888888 3 3455666   6788899999999


Q ss_pred             eecceecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279          145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS  223 (305)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (305)
                      |+++.+|...      ..+++|++|+|++| .++.+. ..+...+|++|+++.|. +..+|.            .+-.++
T Consensus       232 N~Lp~vPecl------y~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~------------avcKL~  291 (1255)
T KOG0444|consen  232 NNLPIVPECL------YKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPD------------AVCKLT  291 (1255)
T ss_pred             cCCCcchHHH------hhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchH------------HHhhhH
Confidence            9888888776      57899999999998 777664 34566789999999954 555554            566788


Q ss_pred             ccceeeccCcc-cCceecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279          224 NLMVIDLQHLP-SLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       224 ~L~~L~l~~~~-~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      +|+.|.+.++. ..+.+|.+++.+..|+++... ++++.-+|.++....
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa-nN~LElVPEglcRC~  339 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA-NNKLELVPEGLCRCV  339 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhh-ccccccCchhhhhhH
Confidence            99998888872 235788888888889988885 558888899888766

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.67  E-value=4.7e-18  Score=144.68  Aligned_cols=239  Identities=19%  Similarity=0.197  Sum_probs=152.8

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec--eEE-----------
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST--ELV-----------   67 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~-----------   67 (305)
                      ++.+.+||++.| +++++|++++.+++|.+||+++|.++.+|..+|+| +|+.|.+.+|++.++  +.+           
T Consensus       251 L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  251 LNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             cccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            467889999999 99999999999999999999999999999999999 999999999987554  222           


Q ss_pred             ---E--eeccc---------cccccccccccCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCCCcccc-
Q 044279           68 ---A--LHHNF---------CCATTVLAGLESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFSSLD-  131 (305)
Q Consensus        68 ---l--~~~~~---------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~-  131 (305)
                         .  .|.+.         +.....++....+.+.+.|+++.  .+...+++ ++...+- .-+.+++++-|.+..+| 
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~--~qlt~VPdEVfea~~~-~~Vt~VnfskNqL~elPk  405 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD--KQLTLVPDEVFEAAKS-EIVTSVNFSKNQLCELPK  405 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc--cccccCCHHHHHHhhh-cceEEEecccchHhhhhh
Confidence               0  01111         11222334445566777777766  44333332 1111110 11334444433332222 


Q ss_pred             --------------------------ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCC
Q 044279          132 --------------------------FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRC  185 (305)
Q Consensus       132 --------------------------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~  185 (305)
                                                ..+++|.-|++++|.+.++|.++      ..+-.|+.|++++| +...+|-+..
T Consensus       406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~------~~lv~Lq~LnlS~N-rFr~lP~~~y  478 (565)
T KOG0472|consen  406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM------GSLVRLQTLNLSFN-RFRMLPECLY  478 (565)
T ss_pred             hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh------hhhhhhheeccccc-ccccchHHHh
Confidence                                      55566666666666666666554      23444666666666 3233332211


Q ss_pred             -CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCC
Q 044279          186 -APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP  264 (305)
Q Consensus       186 -~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~  264 (305)
                       ...++.+- ..+++++.+++           ..+.+|.+|..|++..+ .+..+|...+.|++|++|.++|+|.-  .|
T Consensus       479 ~lq~lEtll-as~nqi~~vd~-----------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr--~P  543 (565)
T KOG0472|consen  479 ELQTLETLL-ASNNQIGSVDP-----------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR--QP  543 (565)
T ss_pred             hHHHHHHHH-hccccccccCh-----------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCccC--CC
Confidence             12233332 33344555554           34789999999999998 89999999999999999999998743  44


Q ss_pred             CC
Q 044279          265 LN  266 (305)
Q Consensus       265 ~~  266 (305)
                      .+
T Consensus       544 r~  545 (565)
T KOG0472|consen  544 RH  545 (565)
T ss_pred             HH
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=2.2e-16  Score=140.39  Aligned_cols=235  Identities=18%  Similarity=0.135  Sum_probs=159.1

Q ss_pred             ccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            4 LAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      -+.|++++| .+.++. ..|.++++|+.+.+.+|.+..+|...+-..+|+.|++..|.+.              ....++
T Consensus        80 t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~--------------sv~se~  144 (873)
T KOG4194|consen   80 TQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS--------------SVTSEE  144 (873)
T ss_pred             eeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc--------------cccHHH
Confidence            356999999 888774 5689999999999999999999987777778999999999863              334567


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCC
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      +..++.|+.|+++.  +....++.-...  -..++++|+++.|.++++.    ..+.+|-.|.++.|.++.+|...+   
T Consensus       145 L~~l~alrslDLSr--N~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F---  217 (873)
T KOG4194|consen  145 LSALPALRSLDLSR--NLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF---  217 (873)
T ss_pred             HHhHhhhhhhhhhh--chhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh---
Confidence            88888899999988  333322221111  1145888999888887777    566788888888888888887763   


Q ss_pred             cccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCC---------CCcc----ccccccccC
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESP---------GTSE----IEESHHFLS  223 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~  223 (305)
                        ..+++|+.|+|..| ++...  ..|.++++|+.|.+..|. +..+....+.-         +...    -..++-+++
T Consensus       218 --k~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  218 --KRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             --hhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccc
Confidence              66888888888887 55443  235566666666666544 22221111110         0000    012455778


Q ss_pred             ccceeeccCcccCceecC-CCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          224 NLMVIDLQHLPSLTSICC-RAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       224 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      +|+.|+++++ .+.++.. .-..+++|++|+++.+ ++.++|.+
T Consensus       294 ~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~  335 (873)
T KOG4194|consen  294 SLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEG  335 (873)
T ss_pred             hhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCChh
Confidence            8888888887 5655432 1234688888888654 67777655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=2.6e-18  Score=146.29  Aligned_cols=228  Identities=23%  Similarity=0.285  Sum_probs=168.6

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      ++.|.+|++..| ....+|++++.+..++.++.++++++.+|..++.+.+|++++.+.+.               ....+
T Consensus        67 L~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~---------------~~el~  130 (565)
T KOG0472|consen   67 LACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE---------------LKELP  130 (565)
T ss_pred             ccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc---------------eeecC
Confidence            356778888988 88889999999999999999999999999999999999999998887               45677


Q ss_pred             ccccCccCccceeEEEeecCcccc-cccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccC
Q 044279           81 AGLESLENIHDISITLCFVDTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGD  156 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~  156 (305)
                      +.++.+-.|..++-..  +...+. +++....    ++..+.+.++.+...+   ..+..|++++...|.++.+|...  
T Consensus       131 ~~i~~~~~l~dl~~~~--N~i~slp~~~~~~~----~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l--  202 (565)
T KOG0472|consen  131 DSIGRLLDLEDLDATN--NQISSLPEDMVNLS----KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL--  202 (565)
T ss_pred             chHHHHhhhhhhhccc--cccccCchHHHHHH----HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh--
Confidence            7788887777777665  333222 2233332    2555666666666665   44677888887777688888776  


Q ss_pred             CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       157 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                          +.+.+|..|+|..| ++..+|.|.+|..|++++++. +.++.++.           +....+++|..||+.++ .+
T Consensus       203 ----g~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpa-----------e~~~~L~~l~vLDLRdN-kl  264 (565)
T KOG0472|consen  203 ----GGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPA-----------EHLKHLNSLLVLDLRDN-KL  264 (565)
T ss_pred             ----cchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHH-----------HHhcccccceeeecccc-cc
Confidence                56788888888888 777778888888888888877 44555554           23447788888888887 78


Q ss_pred             ceecCCCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279          237 TSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      +++|.+.+-+.+|++|++++ +.+..+|..++.+.
T Consensus       265 ke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlh  298 (565)
T KOG0472|consen  265 KEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLH  298 (565)
T ss_pred             ccCchHHHHhhhhhhhcccC-CccccCCcccccce
Confidence            88887777777788888854 46777777766653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.54  E-value=1.5e-16  Score=147.82  Aligned_cols=219  Identities=22%  Similarity=0.242  Sum_probs=146.4

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      .+|++++++.+ .+..+|+.++.+.+|+.+++.+|++.++|..+..+.+|+.|.+..|.               ...+++
T Consensus       241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne---------------l~yip~  304 (1081)
T KOG0618|consen  241 LNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE---------------LEYIPP  304 (1081)
T ss_pred             ccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh---------------hhhCCC
Confidence            36788888888 77888877888888888888888888888888888888888888887               567788


Q ss_pred             cccCccCccceeEEEeecCcccccccccC-C----------------------CccccceEEEEEcCCCccc--c--ccC
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSS-P----------------------KLQSCVKRLTVASPWFSSL--D--FRM  134 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~----------------------~~~~~L~~L~l~~~~~~~~--~--~~~  134 (305)
                      .+...++|++|++..  +....++...-. .                      ...+.|+.|++..|.+++-  +  ..+
T Consensus       305 ~le~~~sL~tLdL~~--N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~  382 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQS--NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF  382 (1081)
T ss_pred             cccccceeeeeeehh--ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence            888889999999888  444333321110 0                      0011244444443444322  2  556


Q ss_pred             CCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCc
Q 044279          135 DHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTS  213 (305)
Q Consensus       135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  213 (305)
                      .+|+.|+++.|++..+|....     .++..|+.|+|++| +++.+| .+..+++|++|...+|. +..+|         
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~-----~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~-l~~fP---------  446 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKL-----RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQ-LLSFP---------  446 (1081)
T ss_pred             cceeeeeecccccccCCHHHH-----hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCc-eeech---------
Confidence            666777776666666665552     56666666677766 666655 34456666666666644 33333         


Q ss_pred             cccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCCC
Q 044279          214 EIEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCPG  259 (305)
Q Consensus       214 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~  259 (305)
                          .+..+++|+.+|++.+ ++..+.-. ....|+|++|+++|+.+
T Consensus       447 ----e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  447 ----ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ----hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence                3567889999999988 66654322 22448999999998875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.52  E-value=4.2e-14  Score=134.12  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCC
Q 044279          223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGL  260 (305)
Q Consensus       223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l  260 (305)
                      .+|+.|+++++ .++.+|.....+++|+.|++++++.-
T Consensus       422 ~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        422 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCC
Confidence            46777888887 67778777777888999999887643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.47  E-value=3.9e-14  Score=134.82  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=23.1

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS   60 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~   60 (305)
                      |+.|++++| .++.+|..+.  .+|++|++++|+++.+|..+.  .+|+.|++++|.
T Consensus       201 L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        201 ITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            444444444 4444443322  244455555444444443332  244444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.44  E-value=9.1e-13  Score=125.18  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      -..|+++.+ .++.+|+.+.  .+|+.|++.+|++..+|..   .++|++|++++|.+.               .++.. 
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt---------------sLP~l-  260 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT---------------SLPVL-  260 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC---------------cccCc-
Confidence            456888888 7888887664  3788888888888888753   478888888888743               22221 


Q ss_pred             cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceec
Q 044279           84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESIN  151 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  151 (305)
                        .++|+.|++..  +....++.+      ..+|+.|+++.|.++.++..+++|+.|++++|.++.++
T Consensus       261 --p~sL~~L~Ls~--N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp  318 (788)
T PRK15387        261 --PPGLLELSIFS--NPLTHLPAL------PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP  318 (788)
T ss_pred             --ccccceeeccC--Cchhhhhhc------hhhcCEEECcCCccccccccccccceeECCCCccccCC
Confidence              23556666655  332222221      12245555554444444433345555555555544433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=1.9e-13  Score=130.27  Aligned_cols=203  Identities=22%  Similarity=0.191  Sum_probs=149.8

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++|++|++++| .++.+|..+.  .+|+.|++++|++..+|..+.  .+|++|++++|.+               ..++.
T Consensus       220 ~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L---------------~~LP~  279 (754)
T PRK15370        220 GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI---------------SCLPE  279 (754)
T ss_pred             cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc---------------Ccccc
Confidence            47999999999 8899987654  479999999999999988765  5899999999874               34444


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRT  160 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  160 (305)
                      .+.  .+|+.|++++  +....++.     .+...|+.|+++.|.++.++ ...++|+.|++++|.++.++..+      
T Consensus       280 ~l~--~sL~~L~Ls~--N~Lt~LP~-----~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l------  344 (754)
T PRK15370        280 NLP--EELRYLSVYD--NSIRTLPA-----HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL------  344 (754)
T ss_pred             ccC--CCCcEEECCC--CccccCcc-----cchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh------
Confidence            443  4799999988  44333322     12245888999877777776 44578999999999888777332      


Q ss_pred             cCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceec
Q 044279          161 YCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC  240 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  240 (305)
                        +++|+.|++++| .++.+|.- -.++|+.|++++|. +..++.            .+  ...|+.|++++| .+..+|
T Consensus       345 --~~sL~~L~Ls~N-~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~------------~l--~~sL~~LdLs~N-~L~~LP  404 (754)
T PRK15370        345 --PPELQVLDVSKN-QITVLPET-LPPTITTLDVSRNA-LTNLPE------------NL--PAALQIMQASRN-NLVRLP  404 (754)
T ss_pred             --cCcccEEECCCC-CCCcCChh-hcCCcCEEECCCCc-CCCCCH------------hH--HHHHHHHhhccC-CcccCc
Confidence              478999999999 66666531 14689999999976 445554            22  247899999998 677665


Q ss_pred             CCC----CCCCCCceEEeeCCCC
Q 044279          241 CRA----VPLPSLKTISVYDCPG  259 (305)
Q Consensus       241 ~~~----~~~~~L~~L~l~~c~~  259 (305)
                      ...    ..++++..|++.+++.
T Consensus       405 ~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        405 ESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             hhHHHHhhcCCCccEEEeeCCCc
Confidence            432    2457889999988763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=7.7e-15  Score=136.68  Aligned_cols=211  Identities=19%  Similarity=0.205  Sum_probs=153.9

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec-eEE--E-------ee
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST-ELV--A-------LH   70 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~--l-------~~   70 (305)
                      |.+|..++..+| .+..+|..+....+|++|++.+|.++.+|.....++.|++|++..|.+... +.+  +       .+
T Consensus       263 ~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln  341 (1081)
T KOG0618|consen  263 CANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN  341 (1081)
T ss_pred             cccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence            578999999999 889999999999999999999999999998888899999999999876432 000  0       00


Q ss_pred             cccccccccc-ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEece
Q 044279           71 HNFCCATTVL-AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDC  145 (305)
Q Consensus        71 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~  145 (305)
                      .........+ .+=..+..|+.|.+..|..+..-++-+....    +|+.|++++|.+..++    ..+..|++|++++|
T Consensus       342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~----hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK----HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             hhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc----ceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence            0000011111 1112234456666655323333344444433    4999999999888877    77888999999999


Q ss_pred             ecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279          146 SLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL  225 (305)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  225 (305)
                      .++.++..+      ..++.|++|...+| .+..+|.+.+++.|+.+|++.|+ +..+..          +... -.|+|
T Consensus       418 kL~~Lp~tv------a~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l----------~~~~-p~p~L  478 (1081)
T KOG0618|consen  418 KLTTLPDTV------ANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNN-LSEVTL----------PEAL-PSPNL  478 (1081)
T ss_pred             hhhhhhHHH------HhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccch-hhhhhh----------hhhC-CCccc
Confidence            999999665      67899999999998 88889989999999999999966 433322          0111 12899


Q ss_pred             ceeeccCccc
Q 044279          226 MVIDLQHLPS  235 (305)
Q Consensus       226 ~~L~l~~~~~  235 (305)
                      ++|+++++..
T Consensus       479 kyLdlSGN~~  488 (1081)
T KOG0618|consen  479 KYLDLSGNTR  488 (1081)
T ss_pred             ceeeccCCcc
Confidence            9999999965

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=2e-14  Score=109.53  Aligned_cols=79  Identities=34%  Similarity=0.475  Sum_probs=60.3

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      ++..|-++.| .++.+|+.|..+.+|+.|++++|+++.+|..++.++.|++|+++-|+               ....+..
T Consensus        34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---------------l~~lprg   97 (264)
T KOG0617|consen   34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---------------LNILPRG   97 (264)
T ss_pred             hhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---------------hhcCccc
Confidence            4556677777 77777777888888888888888888888788888888888887776               4566777


Q ss_pred             ccCccCccceeEEEe
Q 044279           83 LESLENIHDISITLC   97 (305)
Q Consensus        83 l~~l~~L~~L~l~~~   97 (305)
                      ++.++.|+.|++.++
T Consensus        98 fgs~p~levldltyn  112 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYN  112 (264)
T ss_pred             cCCCchhhhhhcccc
Confidence            788888888777773

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.27  E-value=7.9e-13  Score=115.50  Aligned_cols=15  Identities=20%  Similarity=-0.057  Sum_probs=7.0

Q ss_pred             ccccccceeeccccc
Q 044279           46 KYLKNLKILRLDVFS   60 (305)
Q Consensus        46 ~~l~~L~~L~l~~~~   60 (305)
                      +.+++|++|++++|.
T Consensus        78 ~~~~~L~~L~l~~~~   92 (319)
T cd00116          78 TKGCGLQELDLSDNA   92 (319)
T ss_pred             HhcCceeEEEccCCC
Confidence            334445555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.22  E-value=1.4e-12  Score=113.96  Aligned_cols=234  Identities=18%  Similarity=0.128  Sum_probs=123.0

Q ss_pred             CcccEEeCCCCCCcc-------ccchhhhcccccccccccCCccc-cCCcccccccc---cceeeccccceeeceEEEee
Q 044279            2 HALAVLDLSYNFDLV-------ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKN---LKILRLDVFSWFSTELVALH   70 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~-------~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~---L~~L~l~~~~~~~~~~~l~~   70 (305)
                      +.+++|+++++ .+.       .++..+.++++|++|++++|.+. ..+..+..+.+   |++|++++|.+.+       
T Consensus        51 ~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-------  122 (319)
T cd00116          51 PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-------  122 (319)
T ss_pred             CCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-------
Confidence            45788888887 444       23445677889999999988776 34444555554   9999999887531       


Q ss_pred             ccccccccccccccCc-cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcc-----cc---ccCCCccEEE
Q 044279           71 HNFCCATTVLAGLESL-ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSS-----LD---FRMDHLETLE  141 (305)
Q Consensus        71 ~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----~~---~~~~~L~~L~  141 (305)
                         .....+...+..+ ++|+.|++.+|.........+.........|++|+++.+.+..     +.   ...++|+.|+
T Consensus       123 ---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~  199 (319)
T cd00116         123 ---RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD  199 (319)
T ss_pred             ---HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence               0012223445566 7888888887433222222222221122347777777444431     11   3345777777


Q ss_pred             EeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cC-----CCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279          142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WI-----RCAPNLQFLYVSDCQVLSEIIGTYESPGTSE  214 (305)
Q Consensus       142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  214 (305)
                      +++|.+++........ ....+++|++|++++| .+++..  .+     ...+.|++|++++|.....-..        .
T Consensus       200 L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~--------~  269 (319)
T cd00116         200 LNNNGLTDEGASALAE-TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK--------D  269 (319)
T ss_pred             ccCCccChHHHHHHHH-HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH--------H
Confidence            7777654333211100 0245667777777776 444321  11     1235677777777653211000        0


Q ss_pred             ccccccccCccceeeccCcccCcee-----cCCCCCC-CCCceEEeeCC
Q 044279          215 IEESHHFLSNLMVIDLQHLPSLTSI-----CCRAVPL-PSLKTISVYDC  257 (305)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~-~~L~~L~l~~c  257 (305)
                      +......+++|++++++++ .+...     ......+ +.|++++|.+.
T Consensus       270 l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         270 LAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            0113344567777777776 33322     1111223 56666666544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.18  E-value=1.4e-12  Score=111.33  Aligned_cols=85  Identities=25%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             ccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279          160 TYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       160 ~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                      +..+++|++|+|++| .++.+  .+|.....+++|.+..|. ++.+..           ..+.++..|+.|++.++ .++
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~-----------~~f~~ls~L~tL~L~~N-~it  335 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNK-LEFVSS-----------GMFQGLSGLKTLSLYDN-QIT  335 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcch-HHHHHH-----------HhhhccccceeeeecCC-eeE
Confidence            467888999999988 77776  367788889999998854 554443           35678899999999998 777


Q ss_pred             eecCC-CCCCCCCceEEeeCCC
Q 044279          238 SICCR-AVPLPSLKTISVYDCP  258 (305)
Q Consensus       238 ~~~~~-~~~~~~L~~L~l~~c~  258 (305)
                      .+.++ .....+|.+|++-++|
T Consensus       336 ~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  336 TVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             EEecccccccceeeeeehccCc
Confidence            66443 3467778888876655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=6.3e-12  Score=104.07  Aligned_cols=194  Identities=14%  Similarity=0.142  Sum_probs=120.0

Q ss_pred             chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEE--------eeccc-cccccccccccCccCc
Q 044279           19 PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVA--------LHHNF-CCATTVLAGLESLENI   89 (305)
Q Consensus        19 p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l--------~~~~~-~~~~~~~~~l~~l~~L   89 (305)
                      |..+.-+++|+.+.++.|.-+.+-.-.-.=+.|+++.+.+..+....+++        ++..- +........+..+..|
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             ccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence            33344455555555555533333211112245566655554433322221        11111 1122233445667778


Q ss_pred             cceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccc
Q 044279           90 HDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLR  167 (305)
Q Consensus        90 ~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~  167 (305)
                      +.+++++     ..+..+.+..++.+.++.|+++.|++..+.  ..+++|..|++++|.++.+.      ||...+.|++
T Consensus       287 telDLS~-----N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~------Gwh~KLGNIK  355 (490)
T KOG1259|consen  287 TELDLSG-----NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECV------GWHLKLGNIK  355 (490)
T ss_pred             hhccccc-----cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhh------hhHhhhcCEe
Confidence            8888877     444555556666677888888877777666  77888888888888766555      3346788888


Q ss_pred             eEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCccc
Q 044279          168 HLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS  235 (305)
Q Consensus       168 ~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  235 (305)
                      +|.|+.| .+++++.++.+.+|.+|++++|+ +++...          ...+|++|-|+++.+.++|-
T Consensus       356 tL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~lde----------V~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  356 TLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDE----------VNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHH----------hcccccccHHHHHhhcCCCc
Confidence            8888888 78888878888888888888865 433322          13678888888888888753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-12  Score=97.27  Aligned_cols=135  Identities=23%  Similarity=0.297  Sum_probs=103.5

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +.+|++|++++| .+.++|..++.+++|+.|++..|++..+|.+||.++.|+.|++.+|...             ...++
T Consensus        55 l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~-------------e~~lp  120 (264)
T KOG0617|consen   55 LKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN-------------ENSLP  120 (264)
T ss_pred             hhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc-------------cccCC
Confidence            457899999999 9999999999999999999999999999999999999999999998764             45677


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT  160 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  160 (305)
                      ..+..+..|+.|++..+  ...   -+....                    ..+.+|+.|.+.+|++-+.|.++      
T Consensus       121 gnff~m~tlralyl~dn--dfe---~lp~dv--------------------g~lt~lqil~lrdndll~lpkei------  169 (264)
T KOG0617|consen  121 GNFFYMTTLRALYLGDN--DFE---ILPPDV--------------------GKLTNLQILSLRDNDLLSLPKEI------  169 (264)
T ss_pred             cchhHHHHHHHHHhcCC--Ccc---cCChhh--------------------hhhcceeEEeeccCchhhCcHHH------
Confidence            88888888888887762  211   111111                    34666777777777765566554      


Q ss_pred             cCCCccceEeeeCCCCCccCC
Q 044279          161 YCFRNLRHLSVKDCHFMTDLK  181 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~  181 (305)
                      +.+..|+.|++.+| +++.+|
T Consensus       170 g~lt~lrelhiqgn-rl~vlp  189 (264)
T KOG0617|consen  170 GDLTRLRELHIQGN-RLTVLP  189 (264)
T ss_pred             HHHHHHHHHhcccc-eeeecC
Confidence            45677777777777 555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.6e-11  Score=106.23  Aligned_cols=212  Identities=17%  Similarity=0.182  Sum_probs=144.8

Q ss_pred             ccchhhhcccccccccccCCccccCCc--ccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeE
Q 044279           17 ELPEAIGKLINLCHLNLSNTKIRELPA--GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISI   94 (305)
Q Consensus        17 ~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l   94 (305)
                      ++-..-+++.+|+.+.+.++.+...+.  ....|++++.|+++.|-+..            +..+......+++|+.|.+
T Consensus       112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n------------w~~v~~i~eqLp~Le~LNl  179 (505)
T KOG3207|consen  112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN------------WFPVLKIAEQLPSLENLNL  179 (505)
T ss_pred             HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh------------HHHHHHHHHhcccchhccc
Confidence            333335788899999999998876663  68889999999999987532            5666778899999999999


Q ss_pred             EEeecCcccccc-cccCCCccccceEEEEEcCCCc--ccc---ccCCCccEEEEecee-cceecccccCCCcccCCCccc
Q 044279           95 TLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFS--SLD---FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLR  167 (305)
Q Consensus        95 ~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~~---~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~  167 (305)
                      +.  +....+.+ ...  ...+.|+.|.++.++++  ++.   ..+|.|+.|++..|. +......      ...++.|+
T Consensus       180 s~--Nrl~~~~~s~~~--~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~------~~i~~~L~  249 (505)
T KOG3207|consen  180 SS--NRLSNFISSNTT--LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS------TKILQTLQ  249 (505)
T ss_pred             cc--ccccCCccccch--hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch------hhhhhHHh
Confidence            88  44333221 111  13345999999933343  233   789999999999985 2211111      14578899


Q ss_pred             eEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCC--C
Q 044279          168 HLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR--A  243 (305)
Q Consensus       168 ~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~  243 (305)
                      .|||++|..+..-  +..+.+|.|..|.++.|. +.++..     .+.+.-+....+++|++|++..+ .+.+|+..  .
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~-----~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l  322 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE-----PDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHL  322 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccC-cchhcC-----CCccchhhhcccccceeeecccC-ccccccccchh
Confidence            9999999444332  456789999999999865 444433     22222334568999999999998 55555432  2


Q ss_pred             CCCCCCceEEeeCC
Q 044279          244 VPLPSLKTISVYDC  257 (305)
Q Consensus       244 ~~~~~L~~L~l~~c  257 (305)
                      ...++|+.|.+.+.
T Consensus       323 ~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  323 RTLENLKHLRITLN  336 (505)
T ss_pred             hccchhhhhhcccc
Confidence            35677788877544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.04  E-value=1.6e-11  Score=105.05  Aligned_cols=84  Identities=14%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCC
Q 044279          132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYES  209 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~  209 (305)
                      ..+++|++|++++|.++.+...+     +.....++.|.|..| ++..+.  .|..+..|+.|++.+|+ +..+.+    
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~a-----Fe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~----  339 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGA-----FEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAP----  339 (498)
T ss_pred             hhcccceEeccCCCccchhhhhh-----hcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe-eEEEec----
Confidence            77899999999999988887665     377889999999999 777764  57788999999999965 555555    


Q ss_pred             CCCccccccccccCccceeeccCc
Q 044279          210 PGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                             ..+....+|.+|.+-.+
T Consensus       340 -------~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  340 -------GAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             -------ccccccceeeeeehccC
Confidence                   24456667777776553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.03  E-value=6.8e-12  Score=107.95  Aligned_cols=60  Identities=22%  Similarity=0.114  Sum_probs=33.3

Q ss_pred             CCcccEEeCCCCCCcccc--chhhhcccccccccccCC-ccc--cCCcccccccccceeeccccc
Q 044279            1 MHALAVLDLSYNFDLVEL--PEAIGKLINLCHLNLSNT-KIR--ELPAGIKYLKNLKILRLDVFS   60 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~   60 (305)
                      ||++++|++.+|..+++-  -+.-..+++|++|++..| .+.  .+..-...+++|++|+++.|.
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~  227 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP  227 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence            456666666666444421  223456666777776665 343  222223456677777777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.00  E-value=3.4e-10  Score=109.88  Aligned_cols=229  Identities=23%  Similarity=0.257  Sum_probs=146.5

Q ss_pred             CCcccEEeCCCCCC-ccccchh-hhcccccccccccCC-ccccCCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279            1 MHALAVLDLSYNFD-LVELPEA-IGKLINLCHLNLSNT-KIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT   77 (305)
Q Consensus         1 l~~L~~L~l~~~~~-~~~lp~~-~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~   77 (305)
                      +++|+.|-+.++.. +..++.. +..+++|+.||+++| .+..+|..|+.+.+||+|+++++.               ..
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~---------------I~  608 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG---------------IS  608 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC---------------cc
Confidence            35677888888732 5666644 788999999999988 678999999999999999999987               45


Q ss_pred             cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC--Ccccc----ccCCCccEEEEeceecceec
Q 044279           78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW--FSSLD----FRMDHLETLEIVDCSLESIN  151 (305)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~----~~~~~L~~L~l~~~~l~~~~  151 (305)
                      .+|..+.+++.|.+|++..+. ....+   ........+|+.|.+....  .+...    ..+.+|+.+..+.++. .+.
T Consensus       609 ~LP~~l~~Lk~L~~Lnl~~~~-~l~~~---~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~  683 (889)
T KOG4658|consen  609 HLPSGLGNLKKLIYLNLEVTG-RLESI---PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLL  683 (889)
T ss_pred             ccchHHHHHHhhheecccccc-ccccc---cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhH
Confidence            789999999999999998731 11222   2222223349999888332  11111    5666777777765543 111


Q ss_pred             ccccCCCcccCCCccc----eEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCcccccccc-ccCccc
Q 044279          152 IYFGDQGRTYCFRNLR----HLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH-FLSNLM  226 (305)
Q Consensus       152 ~~~~~~~~~~~~~~L~----~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~  226 (305)
                      ...      ....+|.    .+.+.++...+..+.+..+.+|+.|.+.+|...+........       .... .|+++.
T Consensus       684 e~l------~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-------~~~~~~f~~l~  750 (889)
T KOG4658|consen  684 EDL------LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-------LIVLLCFPNLS  750 (889)
T ss_pred             hhh------hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc-------cchhhhHHHHH
Confidence            111      1222333    334444433444566778899999999998875443321000       0111 366777


Q ss_pred             eeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCC
Q 044279          227 VIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKL  263 (305)
Q Consensus       227 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~  263 (305)
                      .+.+..|..++...+. .-.|+|+.|.+.+|+.+.++
T Consensus       751 ~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  751 KVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             HHHhhccccccccchh-hccCcccEEEEecccccccC
Confidence            7777777666655543 33577788887777666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.8e-12  Score=104.58  Aligned_cols=184  Identities=20%  Similarity=0.249  Sum_probs=116.6

Q ss_pred             cccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccc
Q 044279           26 INLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHA  103 (305)
Q Consensus        26 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  103 (305)
                      ..|+++|+++..+.  .+-.-++.|.+|+.|.+.+++.              +..+...++.-.+|+.++++.+  .+..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L--------------dD~I~~~iAkN~~L~~lnlsm~--sG~t  248 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL--------------DDPIVNTIAKNSNLVRLNLSMC--SGFT  248 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc--------------CcHHHHHHhccccceeeccccc--cccc
Confidence            35899999998775  4544478899999999999986              4466677888889999998873  1111


Q ss_pred             ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCC---cc
Q 044279          104 FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFM---TD  179 (305)
Q Consensus       104 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l---~~  179 (305)
                      --.+.                    .+..++..|..|++++|. .++. +....   ..--++|+.|+|+++.+.   .+
T Consensus       249 ~n~~~--------------------ll~~scs~L~~LNlsWc~l~~~~-Vtv~V---~hise~l~~LNlsG~rrnl~~sh  304 (419)
T KOG2120|consen  249 ENALQ--------------------LLLSSCSRLDELNLSWCFLFTEK-VTVAV---AHISETLTQLNLSGYRRNLQKSH  304 (419)
T ss_pred             hhHHH--------------------HHHHhhhhHhhcCchHhhccchh-hhHHH---hhhchhhhhhhhhhhHhhhhhhH
Confidence            10100                    001457778888888887 3333 22211   123467888888877431   12


Q ss_pred             CC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc-eecCCCCCCCCCceEEeeCC
Q 044279          180 LK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT-SICCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       180 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c  257 (305)
                      +. ....||+|.+||+++|..+..--.           ..+..|+.|++|.++.|-.+. .--......|+|.+|++.||
T Consensus       305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  305 LSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHHhCCceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            22 234678888888888877654221           245578888888888885543 11112456788888888777


Q ss_pred             CCC
Q 044279          258 PGL  260 (305)
Q Consensus       258 ~~l  260 (305)
                      -.-
T Consensus       374 vsd  376 (419)
T KOG2120|consen  374 VSD  376 (419)
T ss_pred             cCc
Confidence            433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.1e-11  Score=100.86  Aligned_cols=156  Identities=15%  Similarity=0.159  Sum_probs=107.0

Q ss_pred             CccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEecee-cceecccccCCCcccC
Q 044279           88 NIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFGDQGRTYC  162 (305)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~  162 (305)
                      .|++++++..   ......+..+.+.|.+|+.|.+....+++--    ....+|+.|+++.|+ +++......    +.+
T Consensus       186 Rlq~lDLS~s---~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll----~~s  258 (419)
T KOG2120|consen  186 RLQHLDLSNS---VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL----LSS  258 (419)
T ss_pred             hhHHhhcchh---heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH----HHh
Confidence            5777777662   2233344455555666887777755555433    667889999999998 887776655    478


Q ss_pred             CCccceEeeeCCCCCccC-C-cCCC-CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-
Q 044279          163 FRNLRHLSVKDCHFMTDL-K-WIRC-APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-  238 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~-~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  238 (305)
                      +..|..|+|++|...++. . ...+ -++|..|+++++...-         +...+..-...+|+|.+||+++|..++. 
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl---------~~sh~~tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL---------QKSHLSTLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh---------hhhHHHHHHHhCCceeeeccccccccCch
Confidence            999999999999433332 1 1222 2689999999976421         1111223456899999999999988874 


Q ss_pred             ecCCCCCCCCCceEEeeCCCC
Q 044279          239 ICCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~c~~  259 (305)
                      .-.+...|+-|++|.+++|-.
T Consensus       330 ~~~~~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  330 CFQEFFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             HHHHHHhcchheeeehhhhcC
Confidence            333345799999999999953

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.5e-10  Score=99.02  Aligned_cols=177  Identities=19%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             CCcccEEeCCCCCCcc---ccchhhhcccccccccccCCccccCCcc--cccccccceeeccccceeeceEEEeeccccc
Q 044279            1 MHALAVLDLSYNFDLV---ELPEAIGKLINLCHLNLSNTKIRELPAG--IKYLKNLKILRLDVFSWFSTELVALHHNFCC   75 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~   75 (305)
                      |++++.||++.| .+.   .+-+.+..+++|+.|+++.|++......  -..+.+|+.|.++.|.+.             
T Consensus       145 ~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-------------  210 (505)
T KOG3207|consen  145 LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS-------------  210 (505)
T ss_pred             CCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC-------------
Confidence            456666666666 333   2233356666666666666655422211  124556666666666543             


Q ss_pred             cccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEeceeccee
Q 044279           76 ATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESI  150 (305)
Q Consensus        76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~  150 (305)
                      +..+...+..+++|+.|++..  +.....  -.........|++|+|+.|.+-+++     ..++.|+.|+++.|.++++
T Consensus       211 ~k~V~~~~~~fPsl~~L~L~~--N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  211 WKDVQWILLTFPSLEVLYLEA--NEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             HHHHHHHHHhCCcHHHhhhhc--ccccce--ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence            333444556666677666666  221110  0111112223666666633333322     5566666666666654444


Q ss_pred             ccccc-CCCcccCCCccceEeeeCCCCCccCCcCC---CCCCCCEEEEec
Q 044279          151 NIYFG-DQGRTYCFRNLRHLSVKDCHFMTDLKWIR---CAPNLQFLYVSD  196 (305)
Q Consensus       151 ~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~~~~~~---~~~~L~~L~l~~  196 (305)
                      ..... .......+++|++|++..| .+.+++.+.   .+++|+.|.+..
T Consensus       287 ~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  287 AEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             cCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence            31110 0000234566666666666 444444333   334555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.90  E-value=9.1e-11  Score=101.13  Aligned_cols=237  Identities=19%  Similarity=0.180  Sum_probs=161.1

Q ss_pred             CCcccEEeCCCCCCcccc--chhhhcccccccccccCC-ccc--cCCcccccccccceeeccccceeeceEEEeeccccc
Q 044279            1 MHALAVLDLSYNFDLVEL--PEAIGKLINLCHLNLSNT-KIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCC   75 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~   75 (305)
                      |++|++|++..|..++..  -.....+++|.+|+++-| .+.  .+.....++++++.+.+.+|.-..            
T Consensus       189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~------------  256 (483)
T KOG4341|consen  189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE------------  256 (483)
T ss_pred             cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc------------
Confidence            678999999998677754  334688999999999998 554  454446677889999888875322            


Q ss_pred             cccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc-----ccCCCccEEEEecee-cc
Q 044279           76 ATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD-----FRMDHLETLEIVDCS-LE  148 (305)
Q Consensus        76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~-----~~~~~L~~L~l~~~~-l~  148 (305)
                      .+.+...-+.+.-+..+++..  .......++......+..|+.++.+ +..+++..     .+.++|+.+.+..|. ++
T Consensus       257 le~l~~~~~~~~~i~~lnl~~--c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs  334 (483)
T KOG4341|consen  257 LEALLKAAAYCLEILKLNLQH--CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS  334 (483)
T ss_pred             HHHHHHHhccChHhhccchhh--hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence            122222223333344444434  2333344445555566678999998 77777766     788999999999998 77


Q ss_pred             eecccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279          149 SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL  225 (305)
Q Consensus       149 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  225 (305)
                      +......    .++.+.|+.+++..|..+.+-   +...+++.|+.+.+++|..+.+......       ......+..|
T Consensus       335 d~~ft~l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------~~~~c~~~~l  403 (483)
T KOG4341|consen  335 DRGFTML----GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------SSSSCSLEGL  403 (483)
T ss_pred             hhhhhhh----hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-------hhcccccccc
Confidence            7765554    378899999999998655543   3345789999999999887755421110       1233467788


Q ss_pred             ceeeccCcccCceec-CCCCCCCCCceEEeeCCCCCCC
Q 044279          226 MVIDLQHLPSLTSIC-CRAVPLPSLKTISVYDCPGLRK  262 (305)
Q Consensus       226 ~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~  262 (305)
                      +.+++++|+.+++-. .....++.|+.+++.+|..+.+
T Consensus       404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            999999998876432 2234678899999888876654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=1.9e-09  Score=97.10  Aligned_cols=170  Identities=25%  Similarity=0.343  Sum_probs=105.5

Q ss_pred             cccEEeCCCCCCccccchhhhccc-ccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLI-NLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      .+..|++.++ .+.++|.....+. +|+.|+++++++..+|..++.+++|+.|+++.|++               ..++.
T Consensus       117 ~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l---------------~~l~~  180 (394)
T COG4886         117 NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL---------------SDLPK  180 (394)
T ss_pred             ceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh---------------hhhhh
Confidence            4667777777 7777777777764 77888887777777776777777888888877763               34444


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC-Ccccc--ccCCCccEEEEeceecceecccccCCC
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW-FSSLD--FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      ....++.|+.|++++  +....++...   .....|+++.++.+. +....  ..+.++..+.+.++.+...+...    
T Consensus       181 ~~~~~~~L~~L~ls~--N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~----  251 (394)
T COG4886         181 LLSNLSNLNNLDLSG--NKISDLPPEI---ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI----  251 (394)
T ss_pred             hhhhhhhhhheeccC--CccccCchhh---hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchh----
Confidence            444667777777776  3333333321   122236666666442 22222  55556666666666554432222    


Q ss_pred             cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccc
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  200 (305)
                        ..++++++|++++| .+++++.+....++++|+++++...
T Consensus       252 --~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         252 --GNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             --ccccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence              45666777777777 6666666666777777777775543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.82  E-value=2.2e-10  Score=102.39  Aligned_cols=163  Identities=23%  Similarity=0.217  Sum_probs=98.3

Q ss_pred             EEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccC
Q 044279            6 VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLES   85 (305)
Q Consensus         6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~   85 (305)
                      ..|++.| .+.++|..++.+..|..+.++.|.+..+|..+..+..|.+++++.|++               ..++..+..
T Consensus        79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql---------------S~lp~~lC~  142 (722)
T KOG0532|consen   79 FADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL---------------SHLPDGLCD  142 (722)
T ss_pred             hhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh---------------hcCChhhhc
Confidence            4677888 788888888888888888888888888888888899999999988884               344555555


Q ss_pred             ccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCCCcccC
Q 044279           86 LENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYC  162 (305)
Q Consensus        86 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  162 (305)
                      ++ |+.|-+..  +.....+.-.   .....|..|+.++|.+..++   ..+..|+.|.+..|.+.+++.+.      . 
T Consensus       143 lp-Lkvli~sN--Nkl~~lp~~i---g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El------~-  209 (722)
T KOG0532|consen  143 LP-LKVLIVSN--NKLTSLPEEI---GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL------C-  209 (722)
T ss_pred             Cc-ceeEEEec--CccccCCccc---ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH------h-
Confidence            55 55555554  2222222111   11222555555555554444   44455555555555555555443      2 


Q ss_pred             CCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccc
Q 044279          163 FRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~  198 (305)
                      .-.|.+||+++| ++..+| .|.+|.+|++|-|.+|.
T Consensus       210 ~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  210 SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             CCceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence            223555555555 555544 35555555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=6.2e-10  Score=87.56  Aligned_cols=130  Identities=19%  Similarity=0.255  Sum_probs=39.6

Q ss_pred             hcccccccccccCCccccCCcccc-cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279           23 GKLINLCHLNLSNTKIRELPAGIK-YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT  101 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  101 (305)
                      -+..++++|+++++.+..+. .++ .+.+|+.|++++|.+.                ....+..+++|+.|.++.  +..
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~----------------~l~~l~~L~~L~~L~L~~--N~I   76 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT----------------KLEGLPGLPRLKTLDLSN--NRI   76 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S------------------TT----TT--EEE--S--S--
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCc----------------cccCccChhhhhhcccCC--CCC
Confidence            44456777777777777663 455 4677777777777642                234566677777777766  332


Q ss_pred             ccccc-cccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279          102 HAFCR-FQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       102 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      ..+.. +.                       ..+++|++|++++|.+.++..-..    ...+++|+.|++.+|+-...-
T Consensus        77 ~~i~~~l~-----------------------~~lp~L~~L~L~~N~I~~l~~l~~----L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   77 SSISEGLD-----------------------KNLPNLQELYLSNNKISDLNELEP----LSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             -S-CHHHH-----------------------HH-TT--EEE-TTS---SCCCCGG----GGG-TT--EEE-TT-GGGGST
T ss_pred             CccccchH-----------------------HhCCcCCEEECcCCcCCChHHhHH----HHcCCCcceeeccCCcccchh
Confidence            22211 00                       235667777777666555442111    256777777777777433221


Q ss_pred             C----cCCCCCCCCEEEEeccc
Q 044279          181 K----WIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       181 ~----~~~~~~~L~~L~l~~~~  198 (305)
                      .    .+..+|+|+.||-....
T Consensus       130 ~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen  130 NYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             THHHHHHHH-TT-SEETTEETT
T ss_pred             hHHHHHHHHcChhheeCCEEcc
Confidence            1    23456777777665544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=7.5e-09  Score=93.27  Aligned_cols=172  Identities=24%  Similarity=0.334  Sum_probs=85.1

Q ss_pred             hhcccccccccccCCccccCCccccccc-ccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279           22 IGKLINLCHLNLSNTKIRELPAGIKYLK-NLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD  100 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  100 (305)
                      +..+..+..|++.++++..+|.....+. +|+.|+++++.+               ..++..+..+++|+.|++..    
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i---------------~~l~~~~~~l~~L~~L~l~~----  172 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI---------------ESLPSPLRNLPNLKNLDLSF----  172 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccch---------------hhhhhhhhccccccccccCC----
Confidence            3444556666666666666665555553 666666666652               23334555566666655555    


Q ss_pred             cccccccccCCCccccceEEEEEcCCCcccc--c-cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCC
Q 044279          101 THAFCRFQSSPKLQSCVKRLTVASPWFSSLD--F-RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFM  177 (305)
Q Consensus       101 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  177 (305)
                                              +.+.+++  . ..+.|+.|+++++.++.++...      .....|++|.+++|..+
T Consensus       173 ------------------------N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~L~~l~~~~N~~~  222 (394)
T COG4886         173 ------------------------NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI------ELLSALEELDLSNNSII  222 (394)
T ss_pred             ------------------------chhhhhhhhhhhhhhhhheeccCCccccCchhh------hhhhhhhhhhhcCCcce
Confidence                                    3333333  1 4455555555555555555321      12333555555555333


Q ss_pred             ccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCC
Q 044279          178 TDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       178 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  257 (305)
                      ..+..+..+.++..+.+.++.. ..++            ...+.+++++.|+++++ .++.++. .+...+++.|++++.
T Consensus       223 ~~~~~~~~~~~l~~l~l~~n~~-~~~~------------~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         223 ELLSSLSNLKNLSGLELSNNKL-EDLP------------ESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             ecchhhhhcccccccccCCcee-eecc------------chhccccccceeccccc-ccccccc-ccccCccCEEeccCc
Confidence            3333344445555554444332 1111            13344555555555555 4554444 444555555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.77  E-value=6.4e-10  Score=99.47  Aligned_cols=146  Identities=27%  Similarity=0.333  Sum_probs=115.2

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ..|.+|+++.| .+..+|..++.|+ |+.|-+++|+++.+|.+++....|..|+.+.|.               ...++.
T Consensus       121 ~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne---------------i~slps  183 (722)
T KOG0532|consen  121 EALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE---------------IQSLPS  183 (722)
T ss_pred             hHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh---------------hhhchH
Confidence            35677888888 8888888888876 888888888999999999988899999999887               567888


Q ss_pred             cccCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCC
Q 044279           82 GLESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQ  157 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~  157 (305)
                      .+..+.+|+.|.+..  +....++. +. ...    |.+|+++||.+..+|   ..+.+|++|.|.+|++++.|..+-..
T Consensus       184 ql~~l~slr~l~vrR--n~l~~lp~El~-~Lp----Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k  256 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRR--NHLEDLPEELC-SLP----LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEK  256 (722)
T ss_pred             HhhhHHHHHHHHHhh--hhhhhCCHHHh-CCc----eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence            999999999998888  44444433 33 333    888999999999888   88899999999998888888766432


Q ss_pred             CcccCCCccceEeeeCC
Q 044279          158 GRTYCFRNLRHLSVKDC  174 (305)
Q Consensus       158 ~~~~~~~~L~~L~L~~~  174 (305)
                         +...-.++|+..-|
T Consensus       257 ---GkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  257 ---GKVHIFKYLSTQAC  270 (722)
T ss_pred             ---cceeeeeeecchhc
Confidence               34455677777766

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=2.3e-09  Score=84.34  Aligned_cols=77  Identities=21%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCE
Q 044279          117 VKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQF  191 (305)
Q Consensus       117 L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~  191 (305)
                      |+.|+++.|.+..+.  ..+++|+.|++++|.+++++..+.     ..+++|+.|++++| .+.++.   .+..+|+|+.
T Consensus        44 L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~-----~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   44 LEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD-----KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             --EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH-----HH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred             CCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH-----HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence            333444433333333  445566666666666555542221     24566666666666 444432   3445566666


Q ss_pred             EEEecccc
Q 044279          192 LYVSDCQV  199 (305)
Q Consensus       192 L~l~~~~~  199 (305)
                      |++.+|+.
T Consensus       118 L~L~~NPv  125 (175)
T PF14580_consen  118 LSLEGNPV  125 (175)
T ss_dssp             EE-TT-GG
T ss_pred             eeccCCcc
Confidence            66666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=6e-09  Score=67.51  Aligned_cols=58  Identities=38%  Similarity=0.540  Sum_probs=52.7

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFS   60 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~   60 (305)
                      |+|++|++++| .+..+|. .+.++++|++|++++|++..++.. +.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            68999999999 9999985 589999999999999999988764 8999999999999986

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.58  E-value=3.8e-09  Score=87.80  Aligned_cols=129  Identities=16%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279           22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT  101 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  101 (305)
                      +.-.+.|..+|+++|.++.+-..++-.+.++.|+++.|.+.                .+..++.+.+|+.|++++  +..
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~----------------~v~nLa~L~~L~~LDLS~--N~L  341 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR----------------TVQNLAELPQLQLLDLSG--NLL  341 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee----------------eehhhhhcccceEeeccc--chh
Confidence            44556677777777777776666677777777777777643                233466677777777777  555


Q ss_pred             ccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCC
Q 044279          102 HAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH  175 (305)
Q Consensus       102 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~  175 (305)
                      ..+..|..-   ..++++|.++.|.++++.  ..+=+|..|++++|+++..+.--.    .+++|.|+++.|.+|+
T Consensus       342 s~~~Gwh~K---LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~----IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  342 AECVGWHLK---LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNH----IGNLPCLETLRLTGNP  410 (490)
T ss_pred             HhhhhhHhh---hcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcc----cccccHHHHHhhcCCC
Confidence            555554432   234777777777676666  556678888888888766653221    3678889999888884

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.52  E-value=4.1e-09  Score=89.10  Aligned_cols=236  Identities=17%  Similarity=0.189  Sum_probs=142.3

Q ss_pred             CcccEEeCCCCCCcc-----ccchhhhcccccccccccCC---ccc-cCCcc-------cccccccceeeccccceeece
Q 044279            2 HALAVLDLSYNFDLV-----ELPEAIGKLINLCHLNLSNT---KIR-ELPAG-------IKYLKNLKILRLDVFSWFSTE   65 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~---~l~-~lp~~-------~~~l~~L~~L~l~~~~~~~~~   65 (305)
                      ..+..|++++| .++     .+.+.+.+.+.|+..+++.-   +.+ .+|..       +-.++.|++|+|+.|-+-.  
T Consensus        30 ~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~--  106 (382)
T KOG1909|consen   30 DSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP--  106 (382)
T ss_pred             CceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc--
Confidence            35678888888 665     23444666677777777663   222 34432       3345688888888885411  


Q ss_pred             EEEeeccccccccccccccCccCccceeEEEeecCcccccc---------cccCCCccccceEEEEEcCCCcccc-----
Q 044279           66 LVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR---------FQSSPKLQSCVKRLTVASPWFSSLD-----  131 (305)
Q Consensus        66 ~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~~~~~-----  131 (305)
                              +....+..-+.++..|++|.+..|......-..         .........+|+.+...-|.+.+.+     
T Consensus       107 --------~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  107 --------KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             --------cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence                    112223334566778888888763221111111         1112223345888888866666554     


Q ss_pred             ---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC-----CcCCCCCCCCEEEEecccccccc
Q 044279          132 ---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-----KWIRCAPNLQFLYVSDCQVLSEI  203 (305)
Q Consensus       132 ---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~~~  203 (305)
                         +..+.|+.+.+..|.+..-+......+ +..+++|+.|||.+|.....-     ..+..+++|+.|++++|..-..-
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~ea-l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEA-LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHH-HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence               666889999999988554444221111 367899999999999432221     14567889999999998853321


Q ss_pred             cc-ccCCCCCccccccccccCccceeeccCcccCce-----ecCCCCCCCCCceEEeeCCC
Q 044279          204 IG-TYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-----ICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       204 ~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~  258 (305)
                      .. ...        ..-...|+|+.|.+.+| .++.     +.......|.|+.|++++|.
T Consensus       258 a~a~~~--------al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  258 AIAFVD--------ALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHH--------HHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            11 000        12235899999999998 5542     11123358999999999884

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.48  E-value=9.8e-09  Score=86.89  Aligned_cols=212  Identities=16%  Similarity=0.147  Sum_probs=131.0

Q ss_pred             CcccEEeCCCCC--C-ccccchh-------hhcccccccccccCCccc--cC---CcccccccccceeeccccceeeceE
Q 044279            2 HALAVLDLSYNF--D-LVELPEA-------IGKLINLCHLNLSNTKIR--EL---PAGIKYLKNLKILRLDVFSWFSTEL   66 (305)
Q Consensus         2 ~~L~~L~l~~~~--~-~~~lp~~-------~~~l~~L~~L~l~~~~l~--~l---p~~~~~l~~L~~L~l~~~~~~~~~~   66 (305)
                      ++|+..+++.-+  + ..++|+.       +-.+++|++++||.|.+.  .+   -.-++++..|++|.+.+|-+-..  
T Consensus        58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~--  135 (382)
T KOG1909|consen   58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE--  135 (382)
T ss_pred             ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh--
Confidence            456677776642  1 1245543       345568999999998664  22   23367788999999998864221  


Q ss_pred             EEeecccccccc---------ccccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----
Q 044279           67 VALHHNFCCATT---------VLAGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----  131 (305)
Q Consensus        67 ~l~~~~~~~~~~---------~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----  131 (305)
                              ....         ...-.+.-+.|+.+....  +.....  ..+...-+..+.|+.+.+..|++..-.    
T Consensus       136 --------ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r--Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al  205 (382)
T KOG1909|consen  136 --------AGGRLGRALFELAVNKKAASKPKLRVFICGR--NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL  205 (382)
T ss_pred             --------HHHHHHHHHHHHHHHhccCCCcceEEEEeec--cccccccHHHHHHHHHhccccceEEEecccccCchhHHH
Confidence                    0011         223455667788888777  433322  223333333355888888865543222    


Q ss_pred             ----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-------cCCCCCCCCEEEEeccccc
Q 044279          132 ----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-------WIRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-------~~~~~~~L~~L~l~~~~~~  200 (305)
                          ..+++|+.|++.+|-++.-+....... ...+++|+.|++++| .+++-.       .-...|+|+.|.+.+|.+.
T Consensus       206 ~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  206 AEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence                889999999999997544332211100 256788999999999 665531       1225799999999998765


Q ss_pred             cccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          201 SEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                      .+-....        .......|.|+.|+|++| .+
T Consensus       284 ~da~~~l--------a~~~~ek~dL~kLnLngN-~l  310 (382)
T KOG1909|consen  284 RDAALAL--------AACMAEKPDLEKLNLNGN-RL  310 (382)
T ss_pred             HHHHHHH--------HHHHhcchhhHHhcCCcc-cc
Confidence            4322111        124456899999999999 44

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=4.8e-07  Score=58.47  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             CccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279          136 HLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~  198 (305)
                      +|+.|++++|.++.++...+     ..+++|++|++++| .++.++  .+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f-----~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSF-----SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTT-----TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHH-----cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666665555554442     45566666666655 444442  34555666666665543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=5.8e-07  Score=53.62  Aligned_cols=40  Identities=43%  Similarity=0.621  Sum_probs=30.1

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCC
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP   42 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp   42 (305)
                      ++|++|++++| .++++|..+++|++|++|++++|+++.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            57888888888 78888777888888888888888777654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=6.9e-07  Score=74.49  Aligned_cols=184  Identities=16%  Similarity=0.125  Sum_probs=97.5

Q ss_pred             cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC
Q 044279           47 YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW  126 (305)
Q Consensus        47 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  126 (305)
                      .++.++++++.+|.+++            +..+...+.+++.|+.|.++.  +...+.  +.+..-...+|++|.+....
T Consensus        69 ~~~~v~elDL~~N~iSd------------WseI~~ile~lP~l~~LNls~--N~L~s~--I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISD------------WSEIGAILEQLPALTTLNLSC--NSLSSD--IKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             Hhhhhhhhhcccchhcc------------HHHHHHHHhcCccceEeeccC--CcCCCc--cccCcccccceEEEEEcCCC
Confidence            46678888888888765            666777778888888888877  433221  22222222347777777332


Q ss_pred             C--cccc---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC----cCCCCCCCCEEEEecc
Q 044279          127 F--SSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----WIRCAPNLQFLYVSDC  197 (305)
Q Consensus       127 ~--~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~  197 (305)
                      +  ....   ..+|.+++|.++.|+++.+..+-.-.  -.--+.+++|++..|.. ..+.    .-.-||++..+.+..|
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~--e~~s~~v~tlh~~~c~~-~~w~~~~~l~r~Fpnv~sv~v~e~  209 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI--EDWSTEVLTLHQLPCLE-QLWLNKNKLSRIFPNVNSVFVCEG  209 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccchhhhhccccccc--cccchhhhhhhcCCcHH-HHHHHHHhHHhhcccchheeeecC
Confidence            2  2222   67777888888887533332211000  01124566666666621 1111    1224677777777776


Q ss_pred             ccccccccccCCCCCccccccccccCccceeeccCcccCceecCC--CCCCCCCceEEeeCCCCCC
Q 044279          198 QVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR--AVPLPSLKTISVYDCPGLR  261 (305)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~  261 (305)
                      ..-.           .+.+.....+|.+..|++..+ ++.+|...  ...|++|..|++...|.+.
T Consensus       210 PlK~-----------~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  210 PLKT-----------ESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccc-----------hhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccc
Confidence            5321           111233444555555555554 44433221  2245556666555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.09  E-value=8.6e-07  Score=80.41  Aligned_cols=77  Identities=32%  Similarity=0.423  Sum_probs=54.5

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++|.+|++.+| .+..+...+..+.+|++|++++|.+..+ .++..+..|+.|++.+|.+.                .+.
T Consensus        95 ~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~----------------~~~  156 (414)
T KOG0531|consen   95 KSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS----------------DIS  156 (414)
T ss_pred             cceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch----------------hcc
Confidence            56777888888 7777765567788888888888888777 35677777888888888653                234


Q ss_pred             cccCccCccceeEEE
Q 044279           82 GLESLENIHDISITL   96 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~   96 (305)
                      .+..+..|+.+++.+
T Consensus       157 ~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen  157 GLESLKSLKLLDLSY  171 (414)
T ss_pred             CCccchhhhcccCCc
Confidence            444466777777766

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=2.5e-06  Score=71.28  Aligned_cols=185  Identities=16%  Similarity=0.131  Sum_probs=87.8

Q ss_pred             hcccccccccccCCccccC---CcccccccccceeeccccceeeceEEEeeccccccccccccc-cCccCccceeEEEee
Q 044279           23 GKLINLCHLNLSNTKIREL---PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL-ESLENIHDISITLCF   98 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~   98 (305)
                      ..+.+++.+|+..|.++..   ..-..+|+.|++|+++.|+.               ...+..+ ....+|+.+.+.+  
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L---------------~s~I~~lp~p~~nl~~lVLNg--  130 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL---------------SSDIKSLPLPLKNLRVLVLNG--  130 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC---------------CCccccCcccccceEEEEEcC--
Confidence            4556666777766666532   22245666777777766653               2223333 3455666665554  


Q ss_pred             cCcccccccccCCCccccceEEEEEcCCCcccc-------ccCCCccEEEEeceecc-eecccccCCCcccCCCccceEe
Q 044279           99 VDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-------FRMDHLETLEIVDCSLE-SINIYFGDQGRTYCFRNLRHLS  170 (305)
Q Consensus        99 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~  170 (305)
                       +.-......+.....+.++.|+++.|.+..+.       ..-+.+.++.+..|... .....-.    .+-+|++..+.
T Consensus       131 -T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l----~r~Fpnv~sv~  205 (418)
T KOG2982|consen  131 -TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL----SRIFPNVNSVF  205 (418)
T ss_pred             -CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH----Hhhcccchhee
Confidence             22222222232233333555555533221111       11223445555555411 1100000    14466666666


Q ss_pred             eeCCCCCccCC---cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecC
Q 044279          171 VKDCHFMTDLK---WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICC  241 (305)
Q Consensus       171 L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  241 (305)
                      +..| -+++.+   ....+|.+-.|.++.++.           +++...+.+..|++|..|.+..+|-...+..
T Consensus       206 v~e~-PlK~~s~ek~se~~p~~~~LnL~~~~i-----------dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  206 VCEG-PLKTESSEKGSEPFPSLSCLNLGANNI-----------DSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             eecC-cccchhhcccCCCCCcchhhhhccccc-----------ccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            6666 333332   233455555666666443           2222334566677777777776666555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.94  E-value=9.6e-07  Score=80.10  Aligned_cols=124  Identities=19%  Similarity=0.167  Sum_probs=58.4

Q ss_pred             ccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccc
Q 044279           25 LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF  104 (305)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  104 (305)
                      +..+..+.++.+.+...-..+..+++|..+++.++.+.               .+...+..+++|+.|+++.  +....+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~---------------~i~~~l~~~~~L~~L~ls~--N~I~~i  133 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE---------------KIENLLSSLVNLQVLDLSF--NKITKL  133 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchh---------------hcccchhhhhcchheeccc--cccccc
Confidence            34444444555444443233455555566666555432               1112255555555555555  333333


Q ss_pred             cccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCC
Q 044279          105 CRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC  174 (305)
Q Consensus       105 ~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~  174 (305)
                      ..+..+..    |+.|++..|.+..+.  ..+..|+.+++++|.+..+.....     ..+.+++.+.+.+|
T Consensus       134 ~~l~~l~~----L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  134 EGLSTLTL----LKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGN  196 (414)
T ss_pred             cchhhccc----hhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCC
Confidence            33333322    555555555554444  335555566665555444432100     23455555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.94  E-value=8.4e-08  Score=88.58  Aligned_cols=72  Identities=14%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             ceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCC--CCCCCCE
Q 044279          117 VKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIR--CAPNLQF  191 (305)
Q Consensus       117 L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~--~~~~L~~  191 (305)
                      |.+.+++||.+..+.   .-++.|+.|++++|.++...  .     ...++.|++|||++| .+..+|-+.  .|. |..
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~-----Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--N-----LRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQL  236 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--H-----HHhcccccccccccc-hhccccccchhhhh-hee
Confidence            444555555554444   44556666666666554444  1     134566666666665 555554332  222 555


Q ss_pred             EEEecc
Q 044279          192 LYVSDC  197 (305)
Q Consensus       192 L~l~~~  197 (305)
                      |.+.+|
T Consensus       237 L~lrnN  242 (1096)
T KOG1859|consen  237 LNLRNN  242 (1096)
T ss_pred             eeeccc
Confidence            666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=3.1e-06  Score=80.69  Aligned_cols=82  Identities=26%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             CCcccEEeCCCCCCc-cccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            1 MHALAVLDLSYNFDL-VELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         1 l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +|.|+.|.+++-... +++.....++++|..||+|+++++.+ .+++++++|+.|.+.+-.+.             ....
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e-------------~~~~  212 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFE-------------SYQD  212 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCC-------------chhh
Confidence            345555555553111 12223345666666666666666666 56666666666666665433             2344


Q ss_pred             cccccCccCccceeEEE
Q 044279           80 LAGLESLENIHDISITL   96 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~   96 (305)
                      ...+.++++|+.|+++.
T Consensus       213 l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  213 LIDLFNLKKLRVLDISR  229 (699)
T ss_pred             HHHHhcccCCCeeeccc
Confidence            45566666666666665

>PLN03150 hypothetical protein; Provisional

Probab=97.90  E-value=1.1e-05  Score=76.71  Aligned_cols=79  Identities=25%  Similarity=0.399  Sum_probs=63.0

Q ss_pred             ccEEeCCCCCCcc-ccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            4 LAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         4 L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++.|+|++| .+. .+|..++++++|+.|++++|++. .+|..++.+++|++|++++|.+              ...++.
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l--------------sg~iP~  484 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--------------NGSIPE  484 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC--------------CCCCch
Confidence            567888888 544 67888888888999999888886 7887888888899999888875              345677


Q ss_pred             cccCccCccceeEEEe
Q 044279           82 GLESLENIHDISITLC   97 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~   97 (305)
                      .+..+++|+.|++..|
T Consensus       485 ~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        485 SLGQLTSLRILNLNGN  500 (623)
T ss_pred             HHhcCCCCCEEECcCC
Confidence            7888888888888773

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.2e-05  Score=47.97  Aligned_cols=37  Identities=38%  Similarity=0.465  Sum_probs=31.9

Q ss_pred             cccccccccCCccccCCcccccccccceeecccccee
Q 044279           26 INLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF   62 (305)
Q Consensus        26 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~   62 (305)
                      ++|++|++++|+++.+|..+++|++|++|++++|++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4799999999999999888999999999999999864

...

>PLN03150 hypothetical protein; Provisional

Probab=97.79  E-value=4e-05  Score=73.03  Aligned_cols=110  Identities=16%  Similarity=0.153  Sum_probs=72.1

Q ss_pred             ccEEEEeceecc-eecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279          137 LETLEIVDCSLE-SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE  214 (305)
Q Consensus       137 L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  214 (305)
                      ++.|+++++.+. .++..+      ..+++|+.|+|++|.....+| .+..+++|+.|++++|.....++.         
T Consensus       420 v~~L~L~~n~L~g~ip~~i------~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~---------  484 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI------SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE---------  484 (623)
T ss_pred             EEEEECCCCCccccCCHHH------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch---------
Confidence            667777777754 333333      567888888888883333454 567788888888888765444444         


Q ss_pred             ccccccccCccceeeccCcccCceecCCCCC-CCCCceEEeeCCCCCCCCC
Q 044279          215 IEESHHFLSNLMVIDLQHLPSLTSICCRAVP-LPSLKTISVYDCPGLRKLP  264 (305)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~L~~L~l~~c~~l~~~~  264 (305)
                         .++.+++|+.|++++|.--..+|..... ..++..+++.+++.+...|
T Consensus       485 ---~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        485 ---SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ---HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence               6778888888888888433455544332 3456677787776655443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=7.9e-05  Score=59.01  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             ceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc---CCcCCCCCCCCE
Q 044279          117 VKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD---LKWIRCAPNLQF  191 (305)
Q Consensus       117 L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~~  191 (305)
                      ...++++.|.+-..+  ..++.|..|.+..|+++++.....     ..+++|+.|.|.+| .+..   +..+..||.|++
T Consensus        44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~-----~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD-----TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cceecccccchhhcccCCCccccceEEecCCcceeeccchh-----hhccccceEEecCc-chhhhhhcchhccCCccce
Confidence            344444434333333  556667777776666666665553     45666777777766 3333   334556677777


Q ss_pred             EEEecccc
Q 044279          192 LYVSDCQV  199 (305)
Q Consensus       192 L~l~~~~~  199 (305)
                      |.+-+|+.
T Consensus       118 Ltll~Npv  125 (233)
T KOG1644|consen  118 LTLLGNPV  125 (233)
T ss_pred             eeecCCch
Confidence            76666553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00025  Score=63.06  Aligned_cols=120  Identities=20%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             cccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-
Q 044279           45 IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-  123 (305)
Q Consensus        45 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-  123 (305)
                      +..+.++++|++++|.+               ..++ .+  -.+|+.|.+..| .....+++     .+..+|++|.++ 
T Consensus        48 ~~~~~~l~~L~Is~c~L---------------~sLP-~L--P~sLtsL~Lsnc-~nLtsLP~-----~LP~nLe~L~Ls~  103 (426)
T PRK15386         48 IEEARASGRLYIKDCDI---------------ESLP-VL--PNELTEITIENC-NNLTTLPG-----SIPEGLEKLTVCH  103 (426)
T ss_pred             HHHhcCCCEEEeCCCCC---------------cccC-CC--CCCCcEEEccCC-CCcccCCc-----hhhhhhhheEccC
Confidence            44567777777777652               2333 11  124666666553 11111111     122346667766 


Q ss_pred             cCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCC-CCCCEEEEeccccc
Q 044279          124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCA-PNLQFLYVSDCQVL  200 (305)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~  200 (305)
                      |..+..+   ++.|+.|++..+....++         .-+++|+.|.+.++........-..+ ++|++|++++|..+
T Consensus       104 Cs~L~sL---P~sLe~L~L~~n~~~~L~---------~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        104 CPEISGL---PESVRSLEIKGSATDSIK---------NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ccccccc---ccccceEEeCCCCCcccc---------cCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            5444433   234666666544333222         23355666666433211111100112 46777777776643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00012  Score=65.05  Aligned_cols=127  Identities=17%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             ccceEEEEEcCCCccccccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEE
Q 044279          115 SCVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLY  193 (305)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~  193 (305)
                      .++++|+++.+.+..+|.-+++|++|.+++|. ++.++..        -+++|++|++.+|..+..+|     ++|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~--------LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGS--------IPEGLEKLTVCHCPEISGLP-----ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCch--------hhhhhhheEccCcccccccc-----cccceEE
Confidence            45889999944777777445579999999887 7666632        24689999999886655443     4577777


Q ss_pred             Eeccc--cccccccccCCCC--Ccccc--cccc-cc-CccceeeccCcccCceecCCCCCCCCCceEEeeCC
Q 044279          194 VSDCQ--VLSEIIGTYESPG--TSEIE--ESHH-FL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       194 l~~~~--~~~~~~~~~~~~~--~~~~~--~~~~-~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  257 (305)
                      +.++.  .+..+|.......  .....  .... .+ ++|++|.+.+|..+. ++...  -.+|+.|.++.+
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence            76532  2333333211100  00000  0000 11 467777777774332 22211  146777777554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.57  E-value=1.8e-06  Score=80.07  Aligned_cols=56  Identities=36%  Similarity=0.435  Sum_probs=36.8

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~   61 (305)
                      |...+.++| .+..+..++.-+++|+.|++++|++..+- .+..++.|++|++++|++
T Consensus       166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh
Confidence            444556666 55566666666777777777777776663 566777777777777763

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.45  E-value=6.8e-06  Score=75.81  Aligned_cols=136  Identities=19%  Similarity=0.158  Sum_probs=64.9

Q ss_pred             cccccccccccCC-cccc--CCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279           24 KLINLCHLNLSNT-KIRE--LPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD  100 (305)
Q Consensus        24 ~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  100 (305)
                      .++.|+.+.+..+ .+..  +-.....+++|++|+++++.....         ............+++|+.+++.++  .
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~~~~~~~~L~~l~l~~~--~  254 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT---------LSPLLLLLLLSICRKLKSLDLSGC--G  254 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc---------cchhHhhhhhhhcCCcCccchhhh--h
Confidence            3566666666665 3433  323345666777777765311000         000111123344566666666662  2


Q ss_pred             cccccccccCCCccccceEEEEE-cCCCcccc-----ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeC
Q 044279          101 THAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD-----FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKD  173 (305)
Q Consensus       101 ~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~  173 (305)
                      ......+......+++|+.|.+. |..+++..     ..++.|++|++++|. +++......    ..++++++.|.+..
T Consensus       255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~----~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL----LKNCPNLRELKLLS  330 (482)
T ss_pred             ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH----HHhCcchhhhhhhh
Confidence            22222222223334557777755 54444433     566677777777776 433222111    13455555554443


Q ss_pred             C
Q 044279          174 C  174 (305)
Q Consensus       174 ~  174 (305)
                      +
T Consensus       331 ~  331 (482)
T KOG1947|consen  331 L  331 (482)
T ss_pred             c
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.41  E-value=6e-05  Score=72.09  Aligned_cols=19  Identities=16%  Similarity=0.394  Sum_probs=9.3

Q ss_pred             ccCCCccEEEEeceeccee
Q 044279          132 FRMDHLETLEIVDCSLESI  150 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~  150 (305)
                      .++++|..||+++++++.+
T Consensus       170 ~sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL  188 (699)
T ss_pred             hccCccceeecCCCCccCc
Confidence            4455555555555544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.12  E-value=2.3e-05  Score=72.36  Aligned_cols=172  Identities=20%  Similarity=0.170  Sum_probs=100.2

Q ss_pred             cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEe-ecCcccccccccCCCccccceEEEEE-c
Q 044279           47 YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLC-FVDTHAFCRFQSSPKLQSCVKRLTVA-S  124 (305)
Q Consensus        47 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~L~~L~l~-~  124 (305)
                      .+++|+.+.+.++....            ..........++.|+.|++..+ ................+++|++++++ +
T Consensus       186 ~~~~L~~l~l~~~~~~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  253 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKIT------------DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC  253 (482)
T ss_pred             hCchhhHhhhcccccCC------------hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence            46788888888875321            2224566778888998888751 11111111122244455678899999 6


Q ss_pred             CCCcccc-----ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEe
Q 044279          125 PWFSSLD-----FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVS  195 (305)
Q Consensus       125 ~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~  195 (305)
                      ..+++..     ..+++|+.|.+..|. +++.+....    ...+++|++|++++|..+++.   .....+++|+.|.+.
T Consensus       254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            6566655     458899999988887 666665443    367888999999999777553   123356766666554


Q ss_pred             ccc---cccccccccCCC-C-CccccccccccCccceeeccCcc
Q 044279          196 DCQ---VLSEIIGTYESP-G-TSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       196 ~~~---~~~~~~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      .+.   .++......-.. . +.........+++++.+.+.+|.
T Consensus       330 ~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  330 SLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            443   233322100000 0 11122244566666666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.09  E-value=0.00013  Score=60.48  Aligned_cols=184  Identities=15%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             cccEEeCCCCCCccc-----cchhhhcccccccccccCCcc---c-cCC-------cccccccccceeeccccceeeceE
Q 044279            3 ALAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKI---R-ELP-------AGIKYLKNLKILRLDVFSWFSTEL   66 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l---~-~lp-------~~~~~l~~L~~L~l~~~~~~~~~~   66 (305)
                      .+..+++||| .++.     +...|.+-.+|+..+++....   + .+|       +.+-+|+.|++++++.|-+-.   
T Consensus        31 ~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~---  106 (388)
T COG5238          31 ELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS---  106 (388)
T ss_pred             ceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc---
Confidence            4567788888 6542     233344445666655544311   1 222       223456677777777664311   


Q ss_pred             EEeeccccccccccccccCccCccceeEEEeecCcccccc------cccC-----CCccccceEEEEEcCCCcccc----
Q 044279           67 VALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR------FQSS-----PKLQSCVKRLTVASPWFSSLD----  131 (305)
Q Consensus        67 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------l~~~-----~~~~~~L~~L~l~~~~~~~~~----  131 (305)
                             +..+.+...+..-+.|.+|.+..  +....+..      +..+     ..-.+.|+++...-|.+...+    
T Consensus       107 -------~~~e~L~d~is~~t~l~HL~l~N--nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~  177 (388)
T COG5238         107 -------EFPEELGDLISSSTDLVHLKLNN--NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS  177 (388)
T ss_pred             -------ccchHHHHHHhcCCCceeEEeec--CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence                   11222333455666666666665  32221110      1110     011123555555544444333    


Q ss_pred             ----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-----cCCCCCCCCEEEEecccc
Q 044279          132 ----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-----WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~  199 (305)
                          ..-..|.++.+..|.++.-++..+..-....+++|+.|||.+|.....-+     .+...+.|+.|.+.+|-.
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence                22356777777776655443332111002345677777777773221111     233445677777777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.79  E-value=0.00029  Score=58.47  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=131.6

Q ss_pred             cchhhhcccccccccccCCccc-----cCCcccccccccceeeccccceeec-eEEEeeccccccccccccccCccCccc
Q 044279           18 LPEAIGKLINLCHLNLSNTKIR-----ELPAGIKYLKNLKILRLDVFSWFST-ELVALHHNFCCATTVLAGLESLENIHD   91 (305)
Q Consensus        18 lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~l~~L~~   91 (305)
                      .-..+..+..+..+++|+|.+.     .+-..|.+-.+|+..+++.--...+ +.+     ......+.+.+..|++|+.
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~-----~~~L~~Ll~aLlkcp~l~~   96 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDEL-----YSNLVMLLKALLKCPRLQK   96 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHH-----HHHHHHHHHHHhcCCccee
Confidence            3344666888999999999875     2334455666777777765321000 000     0012234456778999999


Q ss_pred             eeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----------------ccCCCccEEEEeceecceecccc
Q 044279           92 ISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----------------FRMDHLETLEIVDCSLESINIYF  154 (305)
Q Consensus        92 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~L~~L~l~~~~l~~~~~~~  154 (305)
                      .+++.+-......+.+.....-...|.+|.++.|++..+.                 ..-|.|+++....|+++.-+...
T Consensus        97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238          97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence            9998742222223333333233345999999966655433                 66788999999888866555332


Q ss_pred             cCCCcccCCCccceEeeeCCCCCcc--CC-----cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccce
Q 044279          155 GDQGRTYCFRNLRHLSVKDCHFMTD--LK-----WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMV  227 (305)
Q Consensus       155 ~~~~~~~~~~~L~~L~L~~~~~l~~--~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  227 (305)
                       ++..+....+|+.+.+..| .+..  +.     .+..+++|+.|++.+|.....-.        .........++.|+.
T Consensus       177 -~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS--------~~La~al~~W~~lrE  246 (388)
T COG5238         177 -SAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS--------RYLADALCEWNLLRE  246 (388)
T ss_pred             -HHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH--------HHHHHHhcccchhhh
Confidence             1111234478999999988 4332  11     13357889999999976432110        011124567788899


Q ss_pred             eeccCcccCcee-------cCCCCCCCCCceEEeeCC
Q 044279          228 IDLQHLPSLTSI-------CCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       228 L~l~~~~~l~~~-------~~~~~~~~~L~~L~l~~c  257 (305)
                      |.+.+| -+..-       .+....+|+|..|...++
T Consensus       247 L~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         247 LRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             ccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence            999888 33311       111224677777776555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.77  E-value=0.0024  Score=50.86  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             ccCCCccEEEEeceecceecc---cccCCCcccCCCccceEeeeCC
Q 044279          132 FRMDHLETLEIVDCSLESINI---YFGDQGRTYCFRNLRHLSVKDC  174 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~~~~~~L~~L~L~~~  174 (305)
                      ..++.|+.|.+-+|+++.-.-   ..     ...+|+|+.||+.+-
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yv-----l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYV-----LYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEE-----EEecCcceEeehhhh
Confidence            567888999988888655442   22     367899999998865

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0001  Score=61.21  Aligned_cols=79  Identities=24%  Similarity=0.138  Sum_probs=61.9

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      +.+.|+..|| .++++. ...+|+.|+.|.|+-|+++.+ ..+.+|++|++|+|..|.+.+             ......
T Consensus        20 ~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~s-------------ldEL~Y   83 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIES-------------LDELEY   83 (388)
T ss_pred             HhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccccc-------------HHHHHH
Confidence            4567888888 777663 367889999999999999988 468999999999999998763             334456


Q ss_pred             ccCccCccceeEEEe
Q 044279           83 LESLENIHDISITLC   97 (305)
Q Consensus        83 l~~l~~L~~L~l~~~   97 (305)
                      +.++++|+.|.+..|
T Consensus        84 LknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhcCchhhhHhhccC
Confidence            677888888887763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.54  E-value=0.00041  Score=51.73  Aligned_cols=83  Identities=20%  Similarity=0.303  Sum_probs=62.1

Q ss_pred             ccEEeCCCCCCccccchh---hhcccccccccccCCccccCCcccc-cccccceeeccccceeeceEEEeeccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEA---IGKLINLCHLNLSNTKIRELPAGIK-YLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~---~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +..++++.| .+..+++.   +.+..+|...++++|.++.+|+.+. ..+...+|++.+|.               ...+
T Consensus        29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne---------------isdv   92 (177)
T KOG4579|consen   29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE---------------ISDV   92 (177)
T ss_pred             hhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh---------------hhhc
Confidence            456788888 66655544   4555677778899999998888765 44588999999988               4567


Q ss_pred             cccccCccCccceeEEEeecCcccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAF  104 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~  104 (305)
                      |.++..|+.|+.+.++.  +.....
T Consensus        93 PeE~Aam~aLr~lNl~~--N~l~~~  115 (177)
T KOG4579|consen   93 PEELAAMPALRSLNLRF--NPLNAE  115 (177)
T ss_pred             hHHHhhhHHhhhccccc--Cccccc
Confidence            88899999999999888  544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=7.1e-05  Score=62.18  Aligned_cols=74  Identities=19%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             ceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCE
Q 044279          117 VKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQF  191 (305)
Q Consensus       117 L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~  191 (305)
                      ++.|+.+.++++++.  ..++.|+.|.|+.|.++++..       +..|.+|+.|.|..| .+.++.   .+.++|+|+.
T Consensus        21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             hhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-------HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence            444444444455555  555666666666555444331       134555666666555 444432   3345555555


Q ss_pred             EEEeccc
Q 044279          192 LYVSDCQ  198 (305)
Q Consensus       192 L~l~~~~  198 (305)
                      |-|..|.
T Consensus        93 LWL~ENP   99 (388)
T KOG2123|consen   93 LWLDENP   99 (388)
T ss_pred             HhhccCC
Confidence            5555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.34  E-value=0.00055  Score=51.05  Aligned_cols=36  Identities=11%  Similarity=0.157  Sum_probs=15.8

Q ss_pred             ceEEEEEcCCCcccc---ccCCCccEEEEeceecceecc
Q 044279          117 VKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINI  152 (305)
Q Consensus       117 L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~  152 (305)
                      |++|+++.|.+...+   .++.++..|+...+...+++.
T Consensus       102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             hhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            555555544444333   224444444444443444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.24  E-value=0.002  Score=31.97  Aligned_cols=21  Identities=38%  Similarity=0.597  Sum_probs=12.4

Q ss_pred             cccEEeCCCCCCccccchhhhc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGK   24 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~   24 (305)
                      +|++|++++| .++.+|+.+++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4566666666 65666655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.08  E-value=0.0016  Score=32.31  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=16.2

Q ss_pred             ccccccccCCccccCCccccc
Q 044279           27 NLCHLNLSNTKIRELPAGIKY   47 (305)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~~~~   47 (305)
                      +|++|++++|+++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888888888877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.70  E-value=0.0061  Score=50.39  Aligned_cols=107  Identities=25%  Similarity=0.283  Sum_probs=69.8

Q ss_pred             ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCC--CCCccCCc-CCCCCCCCEEEEeccccc--cccccc
Q 044279          132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC--HFMTDLKW-IRCAPNLQFLYVSDCQVL--SEIIGT  206 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~l~~~~~-~~~~~~L~~L~l~~~~~~--~~~~~~  206 (305)
                      ..+..|+.+++.++.+++...       +-.+++|++|.++.|  +....+.. +..+|+|+++.+++|.+-  .++.  
T Consensus        40 d~~~~le~ls~~n~gltt~~~-------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--  110 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTN-------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--  110 (260)
T ss_pred             ccccchhhhhhhccceeeccc-------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--
Confidence            456677778877776544432       136789999999998  33344442 346799999999997742  2222  


Q ss_pred             cCCCCCccccccccccCccceeeccCcccCceecCC----CCCCCCCceEEeeCCCC
Q 044279          207 YESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR----AVPLPSLKTISVYDCPG  259 (305)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~L~~L~l~~c~~  259 (305)
                                 ....+.+|..|++.+|+... +...    ..-+++|+.|+-.++..
T Consensus       111 -----------pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  111 -----------PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             -----------hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence                       35677889999999995433 2111    12478888887755543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.002  Score=51.28  Aligned_cols=86  Identities=24%  Similarity=0.336  Sum_probs=57.1

Q ss_pred             CccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCC-CCCCCCEEEEeccccccccccccCCCCC
Q 044279          136 HLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIR-CAPNLQFLYVSDCQVLSEIIGTYESPGT  212 (305)
Q Consensus       136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~  212 (305)
                      .++.++=+++.+...+.+-+     ..++.++.|.+.+|..+.++.  -++ -.++|+.|+|++|..|++...       
T Consensus       102 ~IeaVDAsds~I~~eGle~L-----~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------  169 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHL-----RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------  169 (221)
T ss_pred             eEEEEecCCchHHHHHHHHH-----hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------
Confidence            35566655555555554432     667778888888887777752  222 357888888888888765443       


Q ss_pred             ccccccccccCccceeeccCcccCc
Q 044279          213 SEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       213 ~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                          ..+..+++|+.|.|.+.+.+.
T Consensus       170 ----~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  170 ----ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             ----HHHHHhhhhHHHHhcCchhhh
Confidence                346678888888888876554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.95  E-value=0.013  Score=48.51  Aligned_cols=82  Identities=28%  Similarity=0.335  Sum_probs=53.8

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCC--ccc-cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNT--KIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +|+.|++.+. .++.+ ..+-.+++|++|.++.|  ++. .++.-...+++|+++.+++|++.             ....
T Consensus        44 ~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-------------~lst  108 (260)
T KOG2739|consen   44 ELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-------------DLST  108 (260)
T ss_pred             chhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-------------cccc
Confidence            4566666666 44333 12346678888888888  333 55545566688888888888764             2445


Q ss_pred             cccccCccCccceeEEEeec
Q 044279           80 LAGLESLENIHDISITLCFV   99 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~   99 (305)
                      ...+..+.+|..|++..|..
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcchhhhhcccCCc
Confidence            56677788888888877543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.71  E-value=0.018  Score=26.47  Aligned_cols=17  Identities=53%  Similarity=0.683  Sum_probs=7.6

Q ss_pred             CcccEEeCCCCCCccccc
Q 044279            2 HALAVLDLSYNFDLVELP   19 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp   19 (305)
                      ++|+.|++++| .++++|
T Consensus         1 ~~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCC-CCCCCc
Confidence            35666666666 455443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.10  E-value=0.0045  Score=49.25  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccc
Q 044279          132 FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~  200 (305)
                      ..++.++.|.+.+|. +.+...+..    ....++|+.|+|++|+.+++-  .++..+++|+.|.+.+-..+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            567778888888887 665554443    145788999999999988885  46778899999988885554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.90  E-value=0.86  Score=33.52  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=41.5

Q ss_pred             cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCC
Q 044279          133 RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESP  210 (305)
Q Consensus       133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  210 (305)
                      .+.+|+.+.+.. .++.++...     +..+.+|+.+.+...  +..++  .+..+++|+.+.+.+  .+..+..     
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~-----F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~-----   74 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENA-----FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGD-----   74 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTT-----TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-T-----
T ss_pred             CCCCCCEEEECC-CeeEeChhh-----ccccccccccccccc--ccccceeeeecccccccccccc--ccccccc-----
Confidence            345666666653 355555444     255666777777653  33332  355666677777744  2222222     


Q ss_pred             CCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEe
Q 044279          211 GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISV  254 (305)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  254 (305)
                            ..+..+++|+.+.+..  .+..++.....-.+|+.+.+
T Consensus        75 ------~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~  110 (129)
T PF13306_consen   75 ------NAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI  110 (129)
T ss_dssp             ------TTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred             ------ccccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence                  1344566777776644  24444443332225665555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.62  E-value=0.17  Score=25.88  Aligned_cols=20  Identities=45%  Similarity=0.599  Sum_probs=11.8

Q ss_pred             CCcccEEeCCCCCCccccchh
Q 044279            1 MHALAVLDLSYNFDLVELPEA   21 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~   21 (305)
                      +++|++|++++| .+..+|..
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHH
Confidence            355666666666 66666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.62  E-value=0.17  Score=25.88  Aligned_cols=20  Identities=45%  Similarity=0.599  Sum_probs=11.8

Q ss_pred             CCcccEEeCCCCCCccccchh
Q 044279            1 MHALAVLDLSYNFDLVELPEA   21 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~   21 (305)
                      +++|++|++++| .+..+|..
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHH
Confidence            355666666666 66666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.99  E-value=0.027  Score=46.10  Aligned_cols=77  Identities=23%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      ..+||++.| .+..+-..++.+..|..||++.+.+..+|.+++....++++.+..|.               ....|...
T Consensus        44 ~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~---------------~~~~p~s~  107 (326)
T KOG0473|consen   44 VTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN---------------HSQQPKSQ  107 (326)
T ss_pred             eeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc---------------hhhCCccc
Confidence            456777777 55555555667777777788777777777777777777777777776               45566667


Q ss_pred             cCccCccceeEEE
Q 044279           84 ESLENIHDISITL   96 (305)
Q Consensus        84 ~~l~~L~~L~l~~   96 (305)
                      ...++++.++.-.
T Consensus       108 ~k~~~~k~~e~k~  120 (326)
T KOG0473|consen  108 KKEPHPKKNEQKK  120 (326)
T ss_pred             cccCCcchhhhcc
Confidence            7777777666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.88  E-value=2.9  Score=30.65  Aligned_cols=89  Identities=18%  Similarity=0.223  Sum_probs=50.7

Q ss_pred             ccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279          160 TYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       160 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                      +..+.+|+.+.+..  .++.+.  .+..+++|+.+.+.+.  +..+..           ..+..+++|+.+.+..  .+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~-----------~~F~~~~~l~~i~~~~--~~~   70 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGD-----------NAFSNCKSLESITFPN--NLK   70 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-T-----------TTTTT-TT-EEEEETS--TT-
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccce-----------eeeecccccccccccc--ccc
Confidence            36778899999875  344543  5778889999999873  555544           2566787899999965  555


Q ss_pred             eecCCCC-CCCCCceEEeeCCCCCCCCCCCC
Q 044279          238 SICCRAV-PLPSLKTISVYDCPGLRKLPLNS  267 (305)
Q Consensus       238 ~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~  267 (305)
                      .++.... .+++|+.+.+..  .++.++...
T Consensus        71 ~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~   99 (129)
T PF13306_consen   71 SIGDNAFSNCTNLKNIDIPS--NITEIGSSS   99 (129)
T ss_dssp             EE-TTTTTT-TTECEEEETT--T-BEEHTTT
T ss_pred             ccccccccccccccccccCc--cccEEchhh
Confidence            6655444 488999999843  355554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.09  E-value=0.062  Score=44.03  Aligned_cols=58  Identities=19%  Similarity=0.121  Sum_probs=53.1

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~   61 (305)
                      .|.+||++.| .+.-+|..++....++.++++.|..+..|..++..++++++++.++.+
T Consensus        66 ~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   66 RLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence            4667899988 888999999999999999999999999999999999999999999874

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.87  E-value=0.52  Score=24.13  Aligned_cols=16  Identities=44%  Similarity=0.756  Sum_probs=7.2

Q ss_pred             CccceEeeeCCCCCcc
Q 044279          164 RNLRHLSVKDCHFMTD  179 (305)
Q Consensus       164 ~~L~~L~L~~~~~l~~  179 (305)
                      ++|++|+|++|..+++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            3444444444444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.06  E-value=1  Score=22.43  Aligned_cols=15  Identities=40%  Similarity=0.477  Sum_probs=8.5

Q ss_pred             CCcccEEeCCCCCCcc
Q 044279            1 MHALAVLDLSYNFDLV   16 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~   16 (305)
                      +++|++|++++| .++
T Consensus         1 ~~~L~~L~l~~n-~i~   15 (24)
T PF13516_consen    1 NPNLETLDLSNN-QIT   15 (24)
T ss_dssp             -TT-SEEE-TSS-BEH
T ss_pred             CCCCCEEEccCC-cCC
Confidence            467778888777 454

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 47/276 (17%), Positives = 85/276 (30%), Gaps = 57/276 (20%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
                 L+L     L + P+   +L +L H+ +    + ELP  ++    L+ L L    
Sbjct: 80  QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA--- 135

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRL 120
                L AL  +       L  L  L +I                     P+        
Sbjct: 136 --RNPLRALPASIAS----LNRLREL-SIRACP------------ELTELPE-------- 168

Query: 121 TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180
            +AS   S     + +L++L +    + S+     +       +NL+ L +++       
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN------LQNLKSLKIRNSPLSALG 222

Query: 181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT--- 237
             I   P L+ L +  C  L         P            + L  + L+   +L    
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNY------P--PIFGG----RAPLKRLILKDCSNLLTLP 270

Query: 238 -SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKN 272
             I      L  L+ + +  C  L +LP        
Sbjct: 271 LDIHR----LTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 58/262 (22%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  L  + +     L+ELP+ + +   L  L L+   +R LPA I  L  L+ L +    
Sbjct: 103 LSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161

Query: 61  WFSTELVALHHNFCCAT--TVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
               EL  L              GL +L+   +    I                  L + 
Sbjct: 162 ----ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----------------SLPAS 201

Query: 117 VKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHF 176
           +  L               +L++L+I +  L ++               L  L ++ C  
Sbjct: 202 IANLQ--------------NLKSLKIRNSPLSALGPAIHH------LPKLEELDLRGCTA 241

Query: 177 MTDL-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS 235
           + +          L+ L + DC  L  +      P   +I      L+ L  +DL+   +
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTL------P--LDIHR----LTQLEKLDLRGCVN 289

Query: 236 LTSICCRAVPLPSLKTISVYDC 257
           L+ +      LP+   I V   
Sbjct: 290 LSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 40/267 (14%), Positives = 77/267 (28%), Gaps = 62/267 (23%)

Query: 3   ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF 62
               L    +  L    + + +     + + +               N    +++  +  
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRN------RWHSAWRQANSNNPQIETRT-- 64

Query: 63  STELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV 122
              L A       AT    G  +L  +  + +                 +      RL+ 
Sbjct: 65  GRALKATADLLEDAT--QPGRVAL-ELRSVPLP----------------QFPDQAFRLS- 104

Query: 123 ASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW 182
                        HL+ + I    L  +            F  L  L++           
Sbjct: 105 -------------HLQHMTIDAAGLMELPDTMQ------QFAGLETLTLARNPLRALPAS 145

Query: 183 IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH-----LPSLT 237
           I     L+ L +  C  L+E+    E   +++    H  L NL  + L+      LP+  
Sbjct: 146 IASLNRLRELSIRACPELTELP---EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-- 200

Query: 238 SICCRAVPLPSLKTISVYDCPGLRKLP 264
           SI      L +LK++ + + P L  L 
Sbjct: 201 SIAN----LQNLKSLKIRNSP-LSALG 222

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP 42
           L  LDL    +L  LP  I +L   C + +      +L 
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 57/293 (19%), Positives = 93/293 (31%), Gaps = 55/293 (18%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
           L  L++S N  L  LP     L+ L   +   T +  LP+G+  L  +   +L       
Sbjct: 83  LRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL-WIFGNQLTSLPVLP 140

Query: 64  TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123
             L  L  +     ++ A    L  +                +  S P L S ++ L+V+
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKL-----------WAYNNQLTSLPMLPSGLQELSVS 189

Query: 124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWI 183
               +SL      L  L   +  L S+               L+ L V        L  +
Sbjct: 190 DNQLASLPTLPSELYKLWAYNNRLTSLPALPS---------GLKELIVSGNR----LTSL 236

Query: 184 RCAP-NLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID-----LQHLPSLT 237
              P  L+ L VS  + L+ +      P            S L+ +      L  LP   
Sbjct: 237 PVLPSELKELMVSGNR-LTSL------PML---------PSGLLSLSVYRNQLTRLPE-- 278

Query: 238 SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWE 290
           S+      L S  T+++   P L +  L +     S     G    +D     
Sbjct: 279 SLIH----LSSETTVNLEGNP-LSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 37/287 (12%), Positives = 82/287 (28%), Gaps = 68/287 (23%)

Query: 1   MHALAVLDLSYNFDLVELPE--AIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDV 58
              + +  + YN +L E P   ++ K++ L  L+  + K+R L A       L  L+LD 
Sbjct: 547 GPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLD- 603

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVK 118
                 ++  +  +FC      A  + +E +   S            + +  P + +   
Sbjct: 604 ----YNQIEEIPEDFC------AFTDQVEGL-GFS----------HNKLKYIPNIFNA-- 640

Query: 119 RLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMT 178
                          +  + +++     + S           Y   N   +++       
Sbjct: 641 -------------KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 179 -DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH----- 232
              +       +  + +S+   ++ I      P     +        L  IDL+      
Sbjct: 688 FPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKN----TYLLTTIDLRFNKLTS 742

Query: 233 LPSLTSICCRAVPLPSLKTI------------SVYDCPGLRKLPLNS 267
           L            LP L  +               +   L+   +  
Sbjct: 743 LSDDFRAT----TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 31/268 (11%), Positives = 68/268 (25%), Gaps = 54/268 (20%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLS-NTKIRELPAGIKYLKNLKILRLDVFSWF 62
               +  Y         +   L +L  + L     + +LP  +  L  L+ L +      
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA----- 523

Query: 63  STELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV 122
               ++        T +    ++   I    +         +   +  P           
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYM--------GYNNLEEFP----------- 564

Query: 123 ASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMT-DLK 181
           AS     +      L  L+ V   +  +   FG          L  L +           
Sbjct: 565 ASASLQKMV----KLGLLDCVHNKVRHLEA-FGT------NVKLTDLKLDYNQIEEIPED 613

Query: 182 WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH-----LPSL 236
           +      ++ L  S  + L  I      P     +     +  +  +D  +         
Sbjct: 614 FCAFTDQVEGLGFSHNK-LKYI------PNIFNAKS----VYVMGSVDFSYNKIGSEGRN 662

Query: 237 TSICCRAVPLPSLKTISVYDCPGLRKLP 264
            S         +  T+++     ++K P
Sbjct: 663 ISCSMDDYKGINASTVTLSYNE-IQKFP 689

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 39/303 (12%), Positives = 89/303 (29%), Gaps = 46/303 (15%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI--------KYLKNLKILR 55
           +  L L+       +P+AIG+L  L  L+                        +    +R
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 56  LDVFSWFSTELVALHH--NFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKL 113
           +     F      L+       A      ++ ++    IS+    +          S  +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 114 QSCVK--RLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSV 171
           Q   K   +  A+  F+  +  +D  +         E+  + + +       ++L  + +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN------LKDLTDVEL 498

Query: 172 KDCHFMTDL-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL 230
            +C  MT L  ++   P LQ L ++  +              + + +       + +  +
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNR-GISAAQLKADW--TRLADDEDTGPKIQIFYM 555

Query: 231 QH-----LPSLTSICCRAVPLPSLKTISVYD-----------CPGLRKLPLNSGSAKNSL 274
            +      P+  S+      +  L  +                  L  L L+     N +
Sbjct: 556 GYNNLEEFPASASLQ----KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY----NQI 607

Query: 275 NAI 277
             I
Sbjct: 608 EEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 7   LDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL 56
            D   N  L + P  I    +L  L + +  IR++   +     L IL +
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 31/250 (12%), Positives = 64/250 (25%), Gaps = 74/250 (29%)

Query: 1   MHALAVLDLSYNFDLVELPEAIG------KLINLCHLNLSNTKIRELPAGI-KYLKNLKI 53
           ++ +  +D SYN  +      I       K IN   + LS  +I++ P  +      +  
Sbjct: 643 VYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 54  LRLDVFSWFSTELVALHHN-FCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPK 112
           + L      +  + ++  N              L  I D+           F +  S   
Sbjct: 702 IILS-----NNLMTSIPENSLKPKDGNYKNTYLLTTI-DLR----------FNKLTSLS- 744

Query: 113 LQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVK 172
                          ++L     +L  +++      S               N   L   
Sbjct: 745 ----------DDFRATTL----PYLSNMDVSYNCFSSF---------PTQPLNSSQLKAF 781

Query: 173 DCHFMTDLKW----------IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL 222
                 D +           I   P+L  L +     + ++                   
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKV--------------DEKLT 826

Query: 223 SNLMVIDLQH 232
             L ++D+  
Sbjct: 827 PQLYILDIAD 836

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 41/263 (15%), Positives = 84/263 (31%), Gaps = 50/263 (19%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDVFSWF 62
           +  L +   +   +L      L  +  + + N+K+  +P    ++LK+L+ L L      
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS----- 342

Query: 63  STELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV 122
              +V  +            L++L  +    +              +   L S    L +
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTL-VLSQNHLRSMQKTGEI---LLTLKNLTS----LDI 394

Query: 123 ASPWFSSLDFRMDHLETLEIVDCS---LESINIYFGDQGRTYCFRNLRHLSVKDCHFMT- 178
           +   F  +       E +  ++ S   +  +         T   + L  L V + +  + 
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK--------TCIPQTLEVLDVSNNNLDSF 446

Query: 179 --DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL 236
              L      P LQ LY+S  + L  +                     L+V+ +     L
Sbjct: 447 SLFL------PRLQELYISRNK-LKTL-------------PDASLFPVLLVMKISRN-QL 485

Query: 237 TSICCRAV-PLPSLKTISVYDCP 258
            S+       L SL+ I ++  P
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 46/323 (14%), Positives = 98/323 (30%), Gaps = 52/323 (16%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLD- 57
              L VL L  +  +  +  +A   L +L HL+LS+  +  L +     L +LK L L  
Sbjct: 49  CANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 58  ----------VFSWFST-ELVALHHNF---CCATTVLAGLESLENIHDISITLCFVDTHA 103
                     +F   +  + + + +            AGL SL  +   +++L    + +
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 104 FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCF 163
               +    L   +         F+     +  +  LE+ D +L                
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFAD---ILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 164 ---RNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH 220
                 R   + D  F   LK +R    L  +   DC +                     
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 221 F-----------------------LSNLMVIDLQH--LPSLTSICCRAVPLPSLKTISVY 255
                                   L  +  I +++  +  +     +   L SL+ + + 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ--HLKSLEFLDLS 342

Query: 256 DCPGLRKLPLNSGSAKNSLNAIR 278
           +   + +  L + + K +  +++
Sbjct: 343 ENL-MVEEYLKNSACKGAWPSLQ 364

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 39/288 (13%), Positives = 89/288 (30%), Gaps = 44/288 (15%)

Query: 4   LAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL----- 56
           +  LDLS+N  +  +    +    NL  L L +++I  +       L +L+ L L     
Sbjct: 28  MKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 57  -----DVFSWFS--TELVALHHNF---CCATTVLAGLESLENI---HDISITLCFVDTHA 103
                  F   S    L  L  N       T++   L +L+ +   +  + +        
Sbjct: 87  SSLSSSWFGPLSSLKYLN-LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-- 143

Query: 104 FCRFQSSPKLQSCVKRLTVASPWFSSL---DFR-MDHLETLEIVDCSLESINIYFGDQGR 159
              F     L      L + +    +      + +  +  L +       +   F D   
Sbjct: 144 ---FAGLTSLN----ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD--- 193

Query: 160 TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESH 219
                ++R+L ++D +    L   + +P       S  + L+           +E+ +  
Sbjct: 194 --ILSSVRYLELRDTN----LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 220 HFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS 267
            ++  L  ++                   +  +   +   +R+L +  
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 38/204 (18%)

Query: 1   MHALAVLDLSYNF---DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILR-L 56
           + +L  LDLS N    + ++     G   +L  L LS   +R +    + L  LK L  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 57  DVFSWFSTELVALHHN-FCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKL 113
           D           +  N F          E +   N+    I +        C  Q+    
Sbjct: 393 D-----------ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK-----TCIPQT---- 432

Query: 114 QSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKD 173
              ++ L V++    S    +  L+ L I    L+++            F  L  + +  
Sbjct: 433 ---LEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-------FPVLLVMKISR 482

Query: 174 CHFMT-DLKWIRCAPNLQFLYVSD 196
               +          +LQ +++  
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHT 506

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 17/163 (10%), Positives = 41/163 (25%), Gaps = 14/163 (8%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
              L  LDLS N  L  +         +  ++L N K+  +   +++ +NL+   L    
Sbjct: 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248

Query: 58  ---------VFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQ 108
                           + VA                     H  +     +      R  
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 109 SSPKLQSCVKRLTVASPW-FSSLDFRMDHLETLEIVDCSLESI 150
           +  + +  +     +                 ++ +     ++
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 40/298 (13%), Positives = 89/298 (29%), Gaps = 47/298 (15%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  L  LDL+ N  + EL        ++  L+ +N  I  +       +  K + L    
Sbjct: 79  LSTLRTLDLNNN-YVQELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLA--- 128

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDIS---ITLCFVDTHAFCRFQSSPKLQSCV 117
             + ++  L                ++ + D+    I    V+        SS  L+   
Sbjct: 129 --NNKITMLRDL------DEGCRSRVQYL-DLKLNEID--TVNFAEL--AASSDTLEH-- 173

Query: 118 KRLTVASPWFSSLDFR--MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH 175
             L +   +   +  +     L+TL++    L  +   F           +  +S+++  
Sbjct: 174 --LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS------AAGVTWISLRNNK 225

Query: 176 FMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS 235
            +   K +R + NL+   +         +  + S        +   +  L   + +    
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 236 LT-----SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLE 288
            T     + CC  +P P    +          L        +    +   RE   +  
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG----SETERLECERENQARQR 339

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 62/290 (21%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
              L +L+LS N  L E  + +  L  L  L+L+N  ++EL        +++ L      
Sbjct: 57  FTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA--- 107

Query: 61  WFSTELVALHHNFCCATTVLAGLESLE----NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
             +  +  +        +   G +++      I  +                   ++Q  
Sbjct: 108 --NNNISRVS------CSRGQGKKNIYLANNKITMLRDLD----------EGCRSRVQY- 148

Query: 117 VKRLTVASPWFSSLDFR-----MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSV 171
              L +      +++F       D LE L +    +  +            F  L+ L +
Sbjct: 149 ---LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-------GQVVFAKLKTLDL 198

Query: 172 KDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQ 231
                       + A  + ++ + + ++               IE++  F  NL   DL+
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKL-------------VLIEKALRFSQNLEHFDLR 245

Query: 232 HLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSR 281
                     R       + +       ++KL   +              
Sbjct: 246 GNG-FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 64/269 (23%)

Query: 1   MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVF 59
              +  LDLS N  L ++    +     L  LNLS+  + E    ++ L  L+ L L+  
Sbjct: 33  AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN-- 88

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSPK 112
                      +N       L    S+E       NI  +S +            Q    
Sbjct: 89  -----------NN---YVQELLVGPSIETLHAANNNISRVSCSR----------GQGKKN 124

Query: 113 LQSCVKRLTVASPW-FSSLDFRMDHLETLEIVDCSLESINI--YFGDQGRTYCFRNLRHL 169
           +     ++T+               ++ L++    ++++N                L HL
Sbjct: 125 IYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAAS------SDTLEHL 174

Query: 170 SVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID 229
           +++    + D+K       L+ L +S  ++             + +       + +  I 
Sbjct: 175 NLQYNF-IYDVKGQVVFAKLKTLDLSSNKL-------------AFMGPEFQSAAGVTWIS 220

Query: 230 LQHLPSLTSICCRAVPLPSLKTISVYDCP 258
           L++   L  I        +L+   +    
Sbjct: 221 LRNN-KLVLIEKALRFSQNLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4  LAVLDLSYNFDLVELPEAIGK-LINLCHLNLSNTKIRELPAG-IKYLKNLKILRL 56
            +  ++ +  L +   ++ +   N+  L+LS   + ++ A  +     L++L L
Sbjct: 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINL----CHLNLSNTKIRELPAGIKYLKNLKILRL 56
             +L  LD+S N  L  LP    +  +             +I  +P  I  L     + L
Sbjct: 179 PESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

Query: 57  D 57
           +
Sbjct: 238 E 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 45/293 (15%), Positives = 84/293 (28%), Gaps = 85/293 (29%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
            + L L+   +L  LP+ +     +  L ++   +  LP     L+ L            
Sbjct: 61  FSELQLNRL-NLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLD----------- 106

Query: 64  TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123
                   N                                 R  + P+L + +K L V 
Sbjct: 107 -----ACDN---------------------------------RLSTLPELPASLKHLDVD 128

Query: 124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWI 183
           +   + L      LE +   +  L  +              +L  LSV++       +  
Sbjct: 129 NNQLTMLPELPALLEYINADNNQLTMLPELPT---------SLEVLSVRNNQLTFLPELP 179

Query: 184 RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID-----LQHLPSLTS 238
               +L+ L VS    L  +         +    +HH     +        + H+P   +
Sbjct: 180 ---ESLEALDVSTNL-LESL--------PAVPVRNHHSEETEIFFRCRENRITHIPE--N 225

Query: 239 ICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWED 291
           I      L    TI + D P L      S S + +     G R ++   + + 
Sbjct: 226 ILS----LDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 10/83 (12%), Positives = 17/83 (20%), Gaps = 3/83 (3%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
                   N  +  +PE I  L   C + L +  +       + L               
Sbjct: 209 EIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRI--RESLSQQTAQPDYHGPRIY 265

Query: 64  TELVALHHNFCCATTVLAGLESL 86
             +     N        A     
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWF 288

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 50/293 (17%), Positives = 104/293 (35%), Gaps = 57/293 (19%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
           + +L  L        V   + +  L  L  L++S+ K+ ++   +  L NL+ L      
Sbjct: 155 LTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ 210

Query: 58  --VFSWFS--TELVALH--HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSP 111
               +     T L  L    N       +  L SL N+ D+ +           +  +  
Sbjct: 211 ISDITPLGILTNLDELSLNGN---QLKDIGTLASLTNLTDLDLA--------NNQISNLA 259

Query: 112 KLQSCVK--RLTVASPWFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLR 167
            L    K   L + +   S++     +  L  LE+ +  LE I     +       +NL 
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-SPISN------LKNLT 312

Query: 168 HLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMV 227
           +L++   +  +D+  +     LQ L+  + +V             S++    + L+N+  
Sbjct: 313 YLTLYFNNI-SDISPVSSLTKLQRLFFYNNKV-------------SDVSSLAN-LTNINW 357

Query: 228 IDLQH--LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIR 278
           +   H  +  LT +      L  +  + + D       P+N  +  +  N ++
Sbjct: 358 LSAGHNQISDLTPLA----NLTRITQLGLNDQA-WTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 52/267 (19%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD-----V 58
           L  + ++ N   +     +  L NL  L L N +I ++   +K L NL  L L       
Sbjct: 92  LVDILMNNN--QIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD 148

Query: 59  FSWFS--TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSC 116
            S  S  T L  L  +F    T L  L +L  +  + I+          +      L   
Sbjct: 149 ISALSGLTSLQQL--SFGNQVTDLKPLANLTTLERLDIS--------SNKVSDISVLAKL 198

Query: 117 V--KRLTVASPWFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVK 172
              + L   +   S +     + +L+ L +    L+ I              NL  L + 
Sbjct: 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-------LTNLTDLDLA 251

Query: 173 DCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
           +    ++L  +     L  L +   Q +S I         S +      L+ L  ++L  
Sbjct: 252 NNQI-SNLAPLSGLTKLTELKLGANQ-ISNI---------SPLAG----LTALTNLELNE 296

Query: 233 --LPSLTSICCRAVPLPSLKTISVYDC 257
             L  ++ I      L +L  +++Y  
Sbjct: 297 NQLEDISPISN----LKNLTYLTLYFN 319

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
              L  LDLS N  L  +         +  ++L N K+  +   +++ +NL+   L 
Sbjct: 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYN-FDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
              +  LDL  N  D V   E       L HLNL    I ++   +     LK L L 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLS 199

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 59/280 (21%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVF 59
              +  LDLS N  L ++    +     L  LNLS+  + E    ++ L  L+ L L+  
Sbjct: 33  AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN-- 88

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLE----NIHDISITLCFVDTHAFCRFQSSPKLQS 115
                      +N+     V   +E+L     NI  +S +            Q    +  
Sbjct: 89  -----------NNYVQELLVGPSIETLHAANNNISRVSCSR----------GQGKKNIYL 127

Query: 116 CVKRLTVASPW-FSSLDFRMDHLETLEIVDCSLESINI--YFGDQGRTYCFRNLRHLSVK 172
              ++T+               ++ L++    ++++N                L HL+++
Sbjct: 128 ANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAAS------SDTLEHLNLQ 177

Query: 173 DCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
                 D+K       L+ L +S  ++             + +       + +  I L++
Sbjct: 178 YNFI-YDVKGQVVFAKLKTLDLSSNKL-------------AFMGPEFQSAAGVTWISLRN 223

Query: 233 LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKN 272
              L  I        +L+   +          L    +KN
Sbjct: 224 N-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKN 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 37/260 (14%), Positives = 81/260 (31%), Gaps = 43/260 (16%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  L  LDL+ N  + EL        ++  L+ +N  I  +       +  K + L    
Sbjct: 79  LSTLRTLDLNNN-YVQELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLA--- 128

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDIS---ITLCFVDTHAFCRFQSSPKLQSCV 117
             + ++  L                ++ + D+    I    V+        SS  L+   
Sbjct: 129 --NNKITMLRDL------DEGCRSRVQYL-DLKLNEID--TVNFAEL--AASSDTLEH-- 173

Query: 118 KRLTVASPWFSSL--DFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH 175
             L +   +   +        L+TL++    L  +   F           +  +S+++  
Sbjct: 174 --LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS------AAGVTWISLRNNK 225

Query: 176 FMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS 235
            +   K +R + NL+   +         +  + S        +   +  L   + +    
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 236 LT-----SICCRAVPLPSLK 250
            T     + CC  +P P   
Sbjct: 286 PTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 38/277 (13%), Positives = 84/277 (30%), Gaps = 62/277 (22%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
              L +L+LS N  L E  + +  L  L  L+L+N  ++EL        +++ L      
Sbjct: 57  FTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA--- 107

Query: 61  WFSTELVALHHNFCCATTVLAGLESLE----NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
             +  +  +        +   G +++      I  +                   ++Q  
Sbjct: 108 --NNNISRVS------CSRGQGKKNIYLANNKITMLRDLD----------EGCRSRVQY- 148

Query: 117 VKRLTVASPWFSSLDF-----RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSV 171
              L +      +++F       D LE L +    +  +            F  L+ L +
Sbjct: 149 ---LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-------VFAKLKTLDL 198

Query: 172 KDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQ 231
                       + A  + ++ + + ++               IE++  F  NL   DL+
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKL-------------VLIEKALRFSQNLEHFDLR 245

Query: 232 HLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSG 268
                     R       + +       ++KL   + 
Sbjct: 246 GNG-FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNE 280

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 47/262 (17%), Positives = 83/262 (31%), Gaps = 49/262 (18%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL------ 56
           +  LDLS+ F           L +L  LNL+  KI ++       L NL++L L      
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 57  ----DVFSWFST-ELVALHHN-----FCCATTVLAGLESLE----NIHDISITLCFVDTH 102
                 F        + L  N            L  L++L+     +  I       D  
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 103 -AFCRFQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGD 156
            +  +  + PK+      + ++     +LD      R+ HL+ L +      S +     
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 157 QGRTYCFRNLRHLSVKDCHF----MTDLKW--IRCAPNLQFLYVSDCQVLSEIIGTYESP 210
                   +L  L + +        T+L W       +LQ LY++    L+ +       
Sbjct: 448 SENP----SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSL------- 495

Query: 211 GTSEIEESHHFLSNLMVIDLQH 232
                      L+ L  + L  
Sbjct: 496 ----PPGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 43/271 (15%), Positives = 81/271 (29%), Gaps = 54/271 (19%)

Query: 1   MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
           +  L +L+L   +  + +  EA   L NL  L+L ++KI  L     + L +L  LRL  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY- 105

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSP 111
                  L     +          L++L         I  + +            F    
Sbjct: 106 ----FCGL----SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS---------FGKLN 148

Query: 112 KLQSCVKRLTVASPWFSSLD------FRMDHLETLEIVDCSLESI-NIYFGDQGRTYCFR 164
            L+S    +  +S     +        +   L    +   SL S  ++ +G     +   
Sbjct: 149 SLKS----IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 165 NLRHLSVKDCHFM-------------TDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPG 211
            L  L V    +              +    +  A ++         +      T+    
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 212 TSEIEE---SHHFLSNLMVIDLQHLPSLTSI 239
            S +     SH F+ +L     + L  L  +
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 21/208 (10%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGIK----YLKNLKILR 55
           +  +A +DL  N  +  + +     L  L  L+L +  +  +         +L   K++ 
Sbjct: 337 LPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

Query: 56  LDVFSWFSTELVALHHNF--CCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKL 113
           L   +  +  +    +          L  +  L+ I  ++    F           +P L
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQ-ILILNQN-RFSSCSGDQTPSENPSL 453

Query: 114 Q----SCVKRLTVASPWFSSLDFR-MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRH 168
           +                     F  + HL+ L +    L S+       G       LR 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-----PPGVFSHLTALRG 508

Query: 169 LSVKDCHFMTDLKWIRCAPNLQFLYVSD 196
           LS+      T L       NL+ L +S 
Sbjct: 509 LSLNSNRL-TVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 39/249 (15%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLS-NTKIRELPAGI-KYLKNLKILRLD 57
           ++    L LS+N+ +  +   +   L  L  L L        +     + L NL+IL L 
Sbjct: 23  LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 58  VFSWFSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQS 115
                S+++  LH +         GL  L    ++   ++   +    F   ++      
Sbjct: 82  -----SSKIYFLHPD------AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA------ 124

Query: 116 CVKRLTVASPWFSSLDFR-----MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLS 170
            + RL ++     SL        ++ L++++     +  +      +      + L   S
Sbjct: 125 -LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC---EHELEPLQGKTLSFFS 180

Query: 171 VKDCHFMT--DLKWIRCA-----PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS 223
           +      +   + W +C        L+ L VS      +I G + +  +     S     
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 224 NLMVIDLQH 232
           ++M      
Sbjct: 241 HIMGAGFGF 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 31/201 (15%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDV--FSW 61
              L+L+    L  LPE      +L  L  S   + ELP   + LK+L +   ++   S 
Sbjct: 73  AHELELNNL-GLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 62  FSTELVALHHNFCCATTV--LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKR 119
               L  L  +      +  L     L+ I D+               +  P L   ++ 
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKII-DVD----------NNSLKKLPDLPPSLEF 177

Query: 120 LTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFM 177
           +   +     L     +  L  +   + SL+ +              +L  +   +    
Sbjct: 178 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL---------SLESIVAGNNIL- 227

Query: 178 TDLKWIRCAPNLQFLYVSDCQ 198
            +L  ++  P L  +Y  +  
Sbjct: 228 EELPELQNLPFLTTIYADNNL 248

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 42/275 (15%), Positives = 73/275 (26%), Gaps = 55/275 (20%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
           L  +    N  L ELPE +  L  L  +   N  ++ LP     L+ L +      +   
Sbjct: 217 LESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY-LTDLP 273

Query: 64  TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123
               +L             L+  EN                  F    +L   +  L  +
Sbjct: 274 ELPQSLTF-----------LDVSEN-----------------IFSGLSELPPNLYYLNAS 305

Query: 124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWI 183
           S    SL      LE L + +  L  +               L  L     H     +  
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLIELPALPP---------RLERLIASFNHLAEVPELP 356

Query: 184 RCAPNLQFLYVSDCQ--VLSEIIGTYESPGTS-EIEESHHFLSNLMVIDLQH-------- 232
               NL+ L+V         +I  + E    +  + E      NL  + ++         
Sbjct: 357 ---QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413

Query: 233 -LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN 266
              S+  +   +  +      +      L      
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 35/205 (17%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--V 58
              L ++D+  N  L +LP+      +L  +   N ++ ELP  ++ L  L  +  D   
Sbjct: 152 SSFLKIIDVDNNS-LKKLPDLPP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNS 206

Query: 59  FSWFSTELVAL-----HHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKL 113
                   ++L      +N       L  L++L  +  I               ++ P L
Sbjct: 207 LKKLPDLPLSLESIVAGNN---ILEELPELQNLPFLTTIYAD--------NNLLKTLPDL 255

Query: 114 QSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKD 173
              ++ L V   + + L      L  L++ +     +         +    NL +L+   
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL---------SELPPNLYYLNASS 306

Query: 174 CHFMTDLKWIRCAPNLQFLYVSDCQ 198
                 L      P+L+ L VS+ +
Sbjct: 307 NEI-RSL--CDLPPSLEELNVSNNK 328

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 40/273 (14%), Positives = 79/273 (28%), Gaps = 48/273 (17%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
           +  ++L  ++              L  L+L+ T + ELP+G+  L  LK L L      +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-----A 310

Query: 64  TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQS------CV 117
            +   L          L  L    N   + +             ++   L+        +
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC--------LENLENLRELDLSHDDI 362

Query: 118 KRLTVASPWFSSLDFRMDHLETLEIVDCSLESI-NIYFGDQGRTYCFRNLRHLSVKDCHF 176
           +     +    +L     HL++L +      S+    F +         L  L +     
Sbjct: 363 ETSDCCNLQLRNL----SHLQSLNLSYNEPLSLKTEAFKE------CPQLELLDLAFTRL 412

Query: 177 --MTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH-- 232
                    +    L+ L +S   +                E+    L  L  ++LQ   
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLL------------DISSEQLFDGLPALQHLNLQGNH 460

Query: 233 LPSLTSICCRA-VPLPSLKTISVYDCPGLRKLP 264
            P        +   L  L+ + +  C  L  + 
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID 492

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 34/276 (12%), Positives = 75/276 (27%), Gaps = 39/276 (14%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL--- 56
           +  L  LDL+         +       L  L L+   +  +        K LK L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 57  -------DVFSWFST-ELVALHHNF--CCATTVLAGLESLE--NIHDISITLCFVDTHAF 104
                         T E + L  N             E L+  +  + +I   ++     
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH--YLSKEDM 173

Query: 105 CRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFR 164
              Q +  L      L +     + ++         + ++       +      +    +
Sbjct: 174 SSLQQATNL-----SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 165 NLRHLSVKDC---HFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF 221
           +L   + +D         +    C  +++ + +                  +    + H 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF------------FNISSNTFHC 276

Query: 222 LSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC 257
            S L  +DL     L+ +    V L +LK + +   
Sbjct: 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 21/133 (15%)

Query: 1   MHALAVLDLSYNF--DLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL- 56
           +  L  LDLS++           +  L +L  LNLS  +   L     K    L++L L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 57  -------DVFSWFS--TELVALH--HNF--CCATTVLAGLESLE--NIHDISITLCFVDT 101
                  D  S F     L  L+  H+     +  +  GL +L+  N+          + 
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP--KGNI 466

Query: 102 HAFCRFQSSPKLQ 114
                 Q+  +L+
Sbjct: 467 QKTNSLQTLGRLE 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 49/299 (16%), Positives = 98/299 (32%), Gaps = 47/299 (15%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVF 59
              L  LD+ +N      PE   KL  L  LNL + ++ +L      +  NL  L L   
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM-- 105

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSPK 112
              S  +  + +N           ++L         +    +                  
Sbjct: 106 ---SNSIQKIKNN------PFVKQKNLITLDLSHNGLSSTKLGT----------QVQLEN 146

Query: 113 LQSCVKRLTVASPWFSSL---DFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHL 169
           LQ     L +++    +L   +  +    +L+ ++  L S  I     G  +    L  L
Sbjct: 147 LQE----LLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQIKEFSPGCFHAIGRLFGL 200

Query: 170 SVKDCHFMTDLKWIRCA----PNLQFLYVSDCQVLSEIIGTYESPGTSEIEE---SHHFL 222
            + +      L    C      +++ L +S+ Q+ +    T+     + +     S++ L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL--NSGSAKNSLNAIRG 279
           + +       LP L         +  L + S++    +R L L  +      SL ++  
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 37/244 (15%), Positives = 87/244 (35%), Gaps = 42/244 (17%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKI-RELPAG-IKYLKNLKILRLDV 58
              L +L+L+ N       +A   L +L  L+L   +I +EL     + L+N+  + L  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS- 438

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
                 + + L  N        A + SL+   +  +++         F        L   
Sbjct: 439 ----YNKYLQLTRN------SFALVPSLQRLMLRRVALKNVDSSPSPFQPL---RNLTI- 484

Query: 117 VKRLTVASPWFSSLDFR----MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVK 172
              L +++   ++++      ++ LE L++   +L  +  +    G  Y  + L HL + 
Sbjct: 485 ---LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 173 DCHF--MTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI 228
           +       ++  +  +    L+ + +     L+ +                +   +L  +
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTL-----------PASVFNNQVSLKSL 589

Query: 229 DLQH 232
           +LQ 
Sbjct: 590 NLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 47/264 (17%), Positives = 90/264 (34%), Gaps = 35/264 (13%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA---GIKYLKNLKILRLD 57
              L  LDLS+N           +L NL  L LSN KI+ L +    I    +LK L L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 58  VFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQ--- 114
                S ++                +  L  +   ++ L    T   C   ++  ++   
Sbjct: 180 -----SNQIKEFSPG------CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 115 -SCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIY-FGDQGRTYCFRNLRHLSVK 172
            S  +  T ++  F  L  +  +L  L++   +L  +    F           L +  ++
Sbjct: 229 LSNSQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGNDSFAW------LPQLEYFFLE 280

Query: 173 DCHFMT-DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQ 231
             +        +    N+++L +        I            + S  +L  L  ++++
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA---SLPKIDDFSFQWLKCLEHLNME 337

Query: 232 H--LPSLTSICCRAVPLPSLKTIS 253
              +P + S       L +LK +S
Sbjct: 338 DNDIPGIKSNMFT--GLINLKYLS 359

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           M  L +L+  YN  L     A G  I L  LNL+  +I E+PA    + + ++ L   
Sbjct: 329 MKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 1   MHALAVLDLSYN-FDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
              + ++ + YN      +  ++ K+  L  L     ++            L  L L 
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA 361

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 7   LDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
            D   N  L E PE I    +L  L + +  IR++   I    N+ +L + 
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIK 595

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAI--GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL 56
            + L  +DL +N  L +L +      L  L  ++LS     + P        LK   +
Sbjct: 487 TYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKI-------RELPAGIKYLKNLKI 53
           +  L  +DLSYN    + P        L    + N +        RE P GI    +L  
Sbjct: 512 LPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 54  LRL 56
           L++
Sbjct: 571 LQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 34/255 (13%), Positives = 77/255 (30%), Gaps = 49/255 (19%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-----ELPAGIKYLKNLKILRLDV 58
           +  L L        +P+AIG+L  L  L L +   +       P GI    + +  +   
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVK 118
             +  T +                 E   ++    I             +S  K      
Sbjct: 143 MHYQKTFVDYD------------PREDFSDLIKDCINSDPQ-------QKSIKKSSRITL 183

Query: 119 RLTVASPWFSSLD------FRMDHLETLEIVDCSLESINI--YFGDQGRTYC-------- 162
           + T      +++        R+  L    + +    + NI   + ++   Y         
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 163 ----FRNLRHLSVKDCHFMTDL-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE 217
                ++L  + V +C  +T L  +++  P +Q + V+  +     I   +     +   
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR----GISGEQLKDDWQALA 299

Query: 218 SHHFLSNLMVIDLQH 232
                  + +I + +
Sbjct: 300 DAPVGEKIQIIYIGY 314

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 33/280 (11%), Positives = 75/280 (26%), Gaps = 80/280 (28%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKI--------------------RELPA 43
              +    N ++  + +A+ +L  L    + N+                      +    
Sbjct: 185 DTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 44  GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHA 103
               LK+L  + +       T+L           T L  L  ++ I +++          
Sbjct: 244 KWDNLKDLTDVEVYNCP-NLTKL----------PTFLKALPEMQLI-NVA---------- 281

Query: 104 FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI--YFGDQGRTY 161
             R  S  +L+   + L  A           + ++ + I   +L++  +           
Sbjct: 282 CNRGISGEQLKDDWQALADAP--------VGEKIQIIYIGYNNLKTFPVETSLQK----- 328

Query: 162 CFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF 221
             + L  L          L        L  L ++  Q ++EI                 F
Sbjct: 329 -MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEI-----------PANFCGF 375

Query: 222 LSNLMVIDLQH-----LPSLTSICCRAVPLPSLKTISVYD 256
              +  +   H     +P++         +  +  I    
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAK----SVSVMSAIDFSY 411

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 33/239 (13%), Positives = 67/239 (28%), Gaps = 56/239 (23%)

Query: 4   LAVLDLSYN-------FDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILR 55
           ++ +D SYN        +   L     K IN+  +NLSN +I + P  +      L  + 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 56  LDVFSWFSTELVALHHN-FCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQ 114
           L         L  +  N              L +I D+           F +        
Sbjct: 464 LM-----GNMLTEIPKNSLKDENENFKNTYLLTSI-DLR----------FNKLTKLS--- 504

Query: 115 SCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174
                        ++L     +L  +++   S         +      F        +  
Sbjct: 505 --------DDFRATTLP----YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 175 HFMTDL-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
             + +  + I   P+L  L +     + ++                    N+ V+D++ 
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSND-IRKVNEK--------------ITPNISVLDIKD 596

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVF 59
           ++ LA L LS+N  +  +   ++    +L  L+L+N K+ ++P G+   K ++++ L   
Sbjct: 215 LNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH-- 271

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLENIH 90
              +  + A+  N  C         S   + 
Sbjct: 272 ---NNNISAIGSNDFCPPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 40/262 (15%), Positives = 84/262 (32%), Gaps = 70/262 (26%)

Query: 1   MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVF 59
           +  L  L L  N  + ++ P A   L+ L  L LS  +++ELP  +   K L+ LR+   
Sbjct: 75  LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH-- 129

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQSCV 117
                E+  +  +      V  GL  +    +    +    ++  A   FQ   KL    
Sbjct: 130 ---ENEITKVRKS------VFNGLNQMIVVELGTNPLKSSGIENGA---FQGMKKLS--- 174

Query: 118 KRLTVASPWFSSLDFRM-DHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHF 176
             + +A    +++   +   L  L +    +  ++            + L          
Sbjct: 175 -YIRIADTNITTIPQGLPPSLTELHLDGNKITKVD--------AASLKGL---------- 215

Query: 177 MTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF--LSNLMVIDLQHLP 234
                      NL  L +S    +S +       G+             +L  + L +  
Sbjct: 216 ----------NNLAKLGLSFNS-ISAV-----DNGS--------LANTPHLRELHLNNN- 250

Query: 235 SLTSICCRAVPLPSLKTISVYD 256
            L  +         ++ + +++
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHN 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 48/262 (18%), Positives = 88/262 (33%), Gaps = 63/262 (24%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
               +L      V       +L ++  +  +N+ I+ +  GI+YL N+  L         
Sbjct: 23  TIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKL--------- 70

Query: 64  TELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
                L+ N       L  L++L         I D+S              +   KL+S 
Sbjct: 71  ----FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS------------SLKDLKKLKS- 113

Query: 117 VKRLTVASPWFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174
              L++     S ++    +  LE+L + +  +  I +             L  LS++D 
Sbjct: 114 ---LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR-------LTKLDTLSLEDN 163

Query: 175 HFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234
             ++D+  +     LQ LY+S   +             S++      L NL V++L    
Sbjct: 164 Q-ISDIVPLAGLTKLQNLYLSKNHI-------------SDLRALAG-LKNLDVLELFSQE 208

Query: 235 SLTSICCRAVPLPSLKTISVYD 256
            L         L    T+   D
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 53/204 (25%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  +  L L+ N  L ++ + +  L NL  L L   KI++L   +K LK LK L L+   
Sbjct: 64  LPNVTKLFLNGN-KLTDI-KPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE--- 117

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRL 120
                     HN     + + GL  L  +  + +               + K+       
Sbjct: 118 ----------HNGI---SDINGLVHLPQLESLYL--------------GNNKITD----- 145

Query: 121 TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180
                  + L  R+  L+TL + D  +  I    G          L++L +   H  +DL
Sbjct: 146 ------ITVLS-RLTKLDTLSLEDNQISDIVPLAG-------LTKLQNLYLSKNHI-SDL 190

Query: 181 KWIRCAPNLQFLYVSDCQVLSEII 204
           + +    NL  L +   + L++ I
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
           +  L  L L  N   +     + +L  L  L+L + +I ++   +  L  L+ L L    
Sbjct: 130 LPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNH 186

Query: 58  ------VFSWFSTELVALHHNFCC--ATTVLAGLESLENIHDISITLCFVDTHAFCRFQS 109
                 +    + +++ L    C        + L     + +   +L   +  +      
Sbjct: 187 ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 246

Query: 110 SPKL 113
            P +
Sbjct: 247 KPNV 250

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 46/295 (15%), Positives = 98/295 (33%), Gaps = 66/295 (22%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
              + +L+L+    + E+   A      +  L +    IR LP  + + +  L +L L+ 
Sbjct: 68  FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE- 125

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQ-- 114
                 +L +L         +      L   ++ + ++    ++      FQ++  LQ  
Sbjct: 126 ----RNDLSSLPRG------IFHNTPKLTTLSMSNNNLE--RIEDDT---FQATTSLQNL 170

Query: 115 ---------------SCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGR 159
                            +    V+    S+L   +  +E L+    S+  +        R
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI-AVEELDASHNSINVV--------R 221

Query: 160 TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESH 219
                 L  L ++  +  TD  W+   P L  + +S  + L +I               H
Sbjct: 222 GPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNE-LEKI-------------MYH 266

Query: 220 HF--LSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKN 272
            F  +  L  + + +   L ++     P+P+LK + +     L  +  N      
Sbjct: 267 PFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           M  L  L +S N  LV L      +  L  L+LS+  +  +         L+ L LD
Sbjct: 271 MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 56/240 (23%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
           ++   ++    +  + +LP   +     +  LNL++ +I E+      Y   ++ L +  
Sbjct: 44  LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG- 101

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
                  +  L  +      V   +  L    +    ++   +       F ++PKL   
Sbjct: 102 ----FNAIRYLPPH------VFQNVPLLTVLVLERNDLS--SLPRGI---FHNTPKLT-- 144

Query: 117 VKRLTVASPWFSSLD---FR-MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVK 172
              L++++     ++   F+    L+ L++    L  +++            +L H +V 
Sbjct: 145 --TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--------IPSLFHANVS 194

Query: 173 DCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
                  L  +     ++ L  S    ++ +                     L ++ LQH
Sbjct: 195 YNL----LSTLAIPIAVEELDASHNS-INVV--------------RGPVNVELTILKLQH 235

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           +  L VLDLS+N  L+ +     +   L +L L +  I  L         LK L L 
Sbjct: 294 IPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLS 347

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 24/218 (11%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
              L  L L+ N  +  + E +   L +L HL+LS   +  L +   K L +L  L L  
Sbjct: 75  CVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 59  --------FSWFS--TELVALHHNFCCATT-----VLAGLESLENIHDISITLCFVDTHA 103
                    S FS  T+L  L        T       AGL  LE +   +  L   +  +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 104 FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESIN---IYFGDQGRT 160
               Q+   L   +K+  +    F         +E LE+ D  L++ +   +  G+    
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVD---VTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 161 YCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ 198
                 R++ + D      +K +     L  L  S  Q
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 47/310 (15%), Positives = 91/310 (29%), Gaps = 83/310 (26%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
              + +L+L+    + E+   A      +  L +    IR LP  + + +  L +L L+ 
Sbjct: 74  FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE- 131

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSP 111
                 +L +L         +      L        N+  I              FQ++ 
Sbjct: 132 ----RNDLSSLPRG------IFHNTPKLTTLSMSNNNLERIEDDT----------FQATT 171

Query: 112 KLQ-----------------SCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYF 154
            LQ                   +    V+    S+L      +E L+    S+  +    
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSINVV---- 226

Query: 155 GDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGT-- 212
               R      L  L ++  +  TD  W+   P L  + +S  + L +I           
Sbjct: 227 ----RGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNE-LEKI-----MYHPFV 275

Query: 213 ---------------SEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC 257
                            +      +  L V+DL H   L  +         L+ + +   
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334

Query: 258 PGLRKLPLNS 267
             +  L L++
Sbjct: 335 S-IVTLKLST 343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 31/245 (12%), Positives = 79/245 (32%), Gaps = 66/245 (26%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
           ++   ++    +  + +LP   +     +  LNL++ +I E+      Y   ++ L +  
Sbjct: 50  LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG- 107

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSP 111
                  +  L  +      V   +  L        ++  +   +          F ++P
Sbjct: 108 ----FNAIRYLPPH------VFQNVPLLTVLVLERNDLSSLPRGI----------FHNTP 147

Query: 112 KLQSCVKRLTVASPWFSSLD---FR-MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLR 167
           KL      L++++     ++   F+    L+ L++    L  +++            +L 
Sbjct: 148 KLT----TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--------IPSLF 195

Query: 168 HLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMV 227
           H +V        L  +     ++ L  S    ++ +                     L +
Sbjct: 196 HANVSYNL----LSTLAIPIAVEELDASHNS-INVV--------------RGPVNVELTI 236

Query: 228 IDLQH 232
           + LQH
Sbjct: 237 LKLQH 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 43/248 (17%)

Query: 1   MHALAVLDLSYNF--DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDV 58
           + +L+ LDLS N          +     +L HL+LS      + A    L+ L+ L    
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD--- 405

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQ---- 114
                       H+     T  +   SLE +  + I+           F     L     
Sbjct: 406 ----------FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 115 -SCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKD 173
                +    S  F++      +L  L++  C LE I       G       L+ L++  
Sbjct: 456 AGNSFKDNTLSNVFANT----TNLTFLDLSKCQLEQI-----SWGVFDTLHRLQLLNMSH 506

Query: 174 CHFMT-DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
            + +  D        +L  L  S  ++             +      HF  +L   +L +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRI------------ETSKGILQHFPKSLAFFNLTN 554

Query: 233 LPSLTSIC 240
              +  IC
Sbjct: 555 NS-VACIC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 37/240 (15%)

Query: 7   LDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL------DVFS 60
             L+Y  D  +       L N+  ++L+   I+ L    K+    + L +         +
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQFPT 324

Query: 61  WFSTELVALH--HNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQS- 115
                L +L    N    +     L SL   ++   +++  F    ++     +  L+  
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS--FSGCCSY-SDLGTNSLRHL 381

Query: 116 --CVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKD 173
                   + S  F  L    + L+ L+    +L+ +     +         L +L +  
Sbjct: 382 DLSFNGAIIMSANFMGL----EELQHLDFQHSTLKRVT----EFSAFLSLEKLLYLDISY 433

Query: 174 CHFMTDLKWI-RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
            +   D   I     +L  L ++                   +       +NL  +DL  
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-----------LSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRL 56
           +H L+ L L+ N      P +   L +L +L    TK+  L +  I  L  LK L +
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 45/317 (14%), Positives = 91/317 (28%), Gaps = 71/317 (22%)

Query: 4   LAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRL----- 56
              +DLS+N  L  L   +      L  L+LS  +I  +       L +L  L L     
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 57  -----DVFSWFS--TELVALHHNF--CCATTVLAGLESLE--NIHDISITLCFVDTHAFC 105
                  FS  +    LV           +  +  L +L+  N+    I        A+ 
Sbjct: 93  QSFSPGSFSGLTSLENLV-AVETKLASLESFPIGQLITLKKLNVAHNFIH--SCKLPAY- 148

Query: 106 RFQSSPKLQSCVKRL--------TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQ 157
            F +   L      +        T+       L        +L++    ++ I       
Sbjct: 149 -FSNLTNLV----HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD----- 198

Query: 158 GRTYCFR--NLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEI 215
                F+   L  L+++     +++             ++   V   I+G ++     EI
Sbjct: 199 ---QAFQGIKLHELTLRGNFNSSNI------MKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 216 EESHHF--LSNLMV--IDLQHLPSLTSICCRAVPLPSLKTISVYD-----------CPGL 260
            E      L ++ +    L +    +    +   L ++  +S+                 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 261 RKLPLNSGSAKNSLNAI 277
           + L +        L   
Sbjct: 310 QSLSIIR----CQLKQF 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 54/294 (18%), Positives = 102/294 (34%), Gaps = 60/294 (20%)

Query: 4   LAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDVFSW 61
             +LDL  N  +  L +       +L  L L+   +  +  G    L NL+ L L     
Sbjct: 34  TRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR---- 88

Query: 62  FSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQSCVKR 119
            S  L  +         V  GL +L   +I +  I    +  +    FQ    L+S    
Sbjct: 89  -SNRLKLIPLG------VFTGLSNLTKLDISENKIV--ILLDYM---FQDLYNLKS---- 132

Query: 120 LTVASPWFSSLD---FR-MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHL------ 169
           L V       +    F  ++ LE L +  C+L SI         T    +L  L      
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--------TEALSHLHGLIVLRLR 184

Query: 170 -----SVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEI-IGTYESPGTSEIEESHHFLS 223
                +++D  F       +    L+ L +S    L  +          + +  +H  L+
Sbjct: 185 HLNINAIRDYSF-------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 224 NLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI 277
            +  + ++HL  L  +     P+ +++   +++   L+++ L        L  +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG----GQLAVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 12/105 (11%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVF 59
           ++ L VL++S+   L  +       +NL  L++++  +  +P   +++L  L+ L L   
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-- 256

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF 104
                 +  +  +      +L  L  L+ I  +   L  V+ +AF
Sbjct: 257 ---YNPISTIEGS------MLHELLRLQEIQLVGGQLAVVEPYAF 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 45/276 (16%), Positives = 89/276 (32%), Gaps = 67/276 (24%)

Query: 6   VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDVFSWFST 64
            +        V +PE I        L+L   +I+ L         +L+ L L+       
Sbjct: 15  AVLCHRK-RFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-----EN 66

Query: 65  ELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQSSPKLQSCVKRL-- 120
            + A+             L +L    +    + L  +       F     L     +L  
Sbjct: 67  IVSAVEPG------AFNNLFNLRTLGLRSNRLKL--IPLGV---FTGLSNLT----KLDI 111

Query: 121 ------TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFR---NLRHLSV 171
                  +    F  L     +L++LE+ D  L  I+           F    +L  L++
Sbjct: 112 SENKIVILLDYMFQDL----YNLKSLEVGDNDLVYIS--------HRAFSGLNSLEQLTL 159

Query: 172 KDCHFMT-DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF--LSNLMVI 228
           + C+  +   + +     L  L +     ++ I               + F  L  L V+
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLN-INAI-------------RDYSFKRLYRLKVL 205

Query: 229 DLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP 264
           ++ H P L ++    +   +L ++S+  C  L  +P
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVP 240

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 38/272 (13%), Positives = 85/272 (31%), Gaps = 54/272 (19%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
           +  L  L L+ +   +     +  L  +  LNL         + +  +  L  L +    
Sbjct: 109 LTNLRELYLNED--NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166

Query: 58  -----VFSWFS--TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSS 110
                  +  +    L  L++N       ++ L SL ++H  +            +    
Sbjct: 167 VKDVTPIANLTDLYSLS-LNYN---QIEDISPLASLTSLHYFTA--------YVNQITDI 214

Query: 111 PKLQSCV--KRLTVASPWFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNL 166
             + +      L + +   + L     +  L  LEI    +  IN    D         L
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKD------LTKL 267

Query: 167 RHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLM 226
           + L+V      +D+  +     L  L++++ Q+ +E +                 L+NL 
Sbjct: 268 KMLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG------------LTNLT 314

Query: 227 VIDLQH--LPSLTSICCRAVPLPSLKTISVYD 256
            + L    +  +  +      L  + +    +
Sbjct: 315 TLFLSQNHITDIRPLA----SLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 37/264 (14%), Positives = 89/264 (33%), Gaps = 57/264 (21%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
                L      V       +L ++  L ++  K+  +  GI+YL NL+ L         
Sbjct: 24  GIRAVLQKA--SVTDVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLN-------- 72

Query: 64  TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123
                L+ N     T ++ L +L  + ++ I                        ++T  
Sbjct: 73  -----LNGNQ---ITDISPLSNLVKLTNLYIGTN---------------------KITDI 103

Query: 124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWI 183
           S    +L     +L  L + + ++  I     +         +  L++   H ++DL  +
Sbjct: 104 SA-LQNL----TNLRELYLNEDNISDI-SPLAN------LTKMYSLNLGANHNLSDLSPL 151

Query: 184 RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA 243
                L +L V++ + + ++           +  +++ + ++    L  L SL       
Sbjct: 152 SNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYV 208

Query: 244 VPLPSLKTISVYDCPGLRKLPLNS 267
             +  +  ++  +   L  L + +
Sbjct: 209 NQITDITPVA--NMTRLNSLKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 39/314 (12%), Positives = 101/314 (32%), Gaps = 83/314 (26%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD--- 57
           + ++  L ++    +  +   I  L NL +LNL+  +I ++   +  L  L  L +    
Sbjct: 43  LESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99

Query: 58  --VFSWFS------------------------TELVALHHNFCCATTVLAGLESLENIHD 91
               S                           T++ +L+       + L+ L ++  ++ 
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 92  ISITLCFVDTHAFCRFQSSPKLQSCVK---------RLTVASPWFSSLDFRMDHLETLEI 142
           +++           + +    + +            ++   SP  +SL      L     
Sbjct: 160 LTV--------TESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASL----TSLHYFTA 206

Query: 143 VDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSE 202
               +  I     +         L  L + +    TDL  +     L +L +   Q +S+
Sbjct: 207 YVNQITDI-TPVAN------MTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQ-ISD 257

Query: 203 IIGTYESPGTSEIEESHHFLSNLMVIDLQH--LPSLTSICCRAVPLPSLKTISVYDCPGL 260
           I         + +++    L+ L ++++    +  ++ +      L  L ++ + +   L
Sbjct: 258 I---------NAVKD----LTKLKMLNVGSNQISDISVLN----NLSQLNSLFLNNNQ-L 299

Query: 261 RKLPLNSGSAKNSL 274
               +       +L
Sbjct: 300 GNEDMEVIGGLTNL 313

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 50/267 (18%), Positives = 93/267 (34%), Gaps = 54/267 (20%)

Query: 4   LAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDVFSW 61
              L+L  N  +  +       L +L  L L    IR++  G    L +L  L L     
Sbjct: 77  TRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF---- 131

Query: 62  FSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQ----SCV 117
               L  +             L  L  +   +  +  + ++A   F   P L       +
Sbjct: 132 -DNWLTVIPSG------AFEYLSKLRELWLRNNPIESIPSYA---FNRVPSLMRLDLGEL 181

Query: 118 KRLTVASP-WFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHF 176
           K+L   S   F  L     +L+ L +  C+++ +               L  L +   HF
Sbjct: 182 KKLEYISEGAFEGL----FNLKYLNLGMCNIKDMP-NLTP------LVGLEELEMSGNHF 230

Query: 177 MTDLKW--IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF--LSNLMVIDLQH 232
             +++        +L+ L+V + Q +S I                 F  L++L+ ++L H
Sbjct: 231 -PEIRPGSFHGLSSLKKLWVMNSQ-VSLI-----ERNA--------FDGLASLVELNLAH 275

Query: 233 LPSLTSICCRAV-PLPSLKTISVYDCP 258
             +L+S+      PL  L  + ++  P
Sbjct: 276 N-NLSSLPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVF 59
           +  L  L+L    ++ ++P  +  L+ L  L +S     E+  G    L +LK L +   
Sbjct: 195 LFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM-- 250

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLENIH 90
              ++++  +  N         GL SL  ++
Sbjct: 251 ---NSQVSLIERN------AFDGLASLVELN 272

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 49/304 (16%), Positives = 91/304 (29%), Gaps = 58/304 (19%)

Query: 3   ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL------ 56
            L  LD   +  + ++   I KL  L  L  ++  I  L   +    NL  L        
Sbjct: 43  TLTSLDCHNS-SITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT 98

Query: 57  DVFSWFSTELVALHHNFCCATTV----LAGLESLE----NIHDISITLCFVDTHAFCRFQ 108
           ++     T+L  L+ +    T +       L  L      + +I ++     T   C   
Sbjct: 99  NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158

Query: 109 ---SSPKLQSCVK--RLTVASPWFSSLDF-RMDHLETLEIVDCSLESINIYFGDQGRTYC 162
              +   +    +   L  +    + LD  +   L  L     ++  +++          
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDL--------NQ 210

Query: 163 FRNLRHLSVKDCHF-------MTDLKWIRCA------------PNLQFLYVSDCQVLSEI 203
              L  L              +T L +  C+              L  L+      L EI
Sbjct: 211 NIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-LLEI 269

Query: 204 IGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKL 263
                +  T  I         +  +D+ H   L  + C+A     +  + +   P L  L
Sbjct: 270 DL---THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA---GITELDLSQNPKLVYL 323

Query: 264 PLNS 267
            LN+
Sbjct: 324 YLNN 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 69/280 (24%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
              L  LD   N  + +L   +     L  L+ S  KI EL   +   K L  L  D   
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCD--- 199

Query: 61  WFSTELVALHHNFCCATTVLAGLESLE----NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
             +  +  L  +          L  L+     + +I +T                +L   
Sbjct: 200 --TNNITKL--DLNQ----NIQLTFLDCSSNKLTEIDVTPL-------------TQLTY- 237

Query: 117 VKRLTVASPWFSSLDF-RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH 175
                 +    + LD   +  L TL  +   L  I++             L +   + C 
Sbjct: 238 ---FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH--------NTQLIYFQAEGCR 286

Query: 176 FMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH------FLSN--LMV 227
            + +L  +     L  L      +             +E++ S +      +L+N  L  
Sbjct: 287 KIKELD-VTHNTQLYLLDCQAAGI-------------TELDLSQNPKLVYLYLNNTELTE 332

Query: 228 IDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS 267
           +D+ H   L S+ C    +    ++     P L       
Sbjct: 333 LDVSHNTKLKSLSCVNAHIQDFSSVG--KIPALNNNFEAE 370

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 42/278 (15%), Positives = 78/278 (28%), Gaps = 74/278 (26%)

Query: 6   VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTE 65
            +  ++     +   +  +L  L  L+  N+ I ++  GI+ L  L  L        S  
Sbjct: 23  EVAAAFEMQATD-TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICT-----SNN 75

Query: 66  LVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSPKLQSCVK 118
           +  L          L+   +L         + ++ +T                KL     
Sbjct: 76  ITTLD---------LSQNTNLTYLACDSNKLTNLDVTPL-------------TKLTY--- 110

Query: 119 RLTVASPWFSSLDFR-MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFM 177
            L   +   + LD      L  L     +L  I++             L  L       +
Sbjct: 111 -LNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDV--------SHNTQLTELDCHLNKKI 161

Query: 178 TDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH------FLSN--LMVID 229
           T L  +     L  L  S  ++             +E++ S +            +  +D
Sbjct: 162 TKLD-VTPQTQLTTLDCSFNKI-------------TELDVSQNKLLNRLNCDTNNITKLD 207

Query: 230 LQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNS 267
           L     LT + C +     L  I V     L     + 
Sbjct: 208 LNQNIQLTFLDCSSN---KLTEIDVTPLTQLTYFDCSV 242

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 6e-06
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 6   VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           VL L++  DL  L   + +L+ + HL+LS+ ++R LP  +  L+ L++L+  
Sbjct: 445 VLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS 494

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVF 59
              L  L L +N  +  +   ++  L  L  L+L N K+  +PAG+  LK L+++ L   
Sbjct: 216 YSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH-- 272

Query: 60  SWFSTELVALHHNFCCATTVLAGLESLENIH--DISITLCFVDTHAF 104
              +  +  +  N  C             I   +  +    V    F
Sbjct: 273 ---TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 28/205 (13%)

Query: 1   MHALAVLDLSYN-FDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDV 58
           +  L  L LS N         ++     +L +L+LS   +  + +    L+ L+ L    
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ- 109

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLE--NIHDISITLCFVDTHAFCRFQS--SPKLQ 114
                + L  +        +V   L +L   +I              F    S    K+ 
Sbjct: 110 ----HSNLKQMS-----EFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMA 158

Query: 115 SCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174
               +       F+ L     +L  L++  C LE +              +L+ L++   
Sbjct: 159 GNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQL-----SPTAFNSLSSLQVLNMSHN 209

Query: 175 HFMT-DLKWIRCAPNLQFLYVSDCQ 198
           +F + D    +C  +LQ L  S   
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNH 234

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 36/248 (14%), Positives = 68/248 (27%), Gaps = 22/248 (8%)

Query: 25  LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE 84
           + NL   N        +      L+ LK +          +L  L          L  L+
Sbjct: 88  MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK-LD 146

Query: 85  SLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVD 144
                    +          CR   +  ++           W   L      LE L    
Sbjct: 147 KCSGFTTDGLLSIV----THCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYM 201

Query: 145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEII 204
                I+    +     C R+L  + V D   +  + + + A NL+            + 
Sbjct: 202 TEFAKISPKDLETIARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP 260

Query: 205 GTYESP--------------GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVP-LPSL 249
             Y +               G +E+     F + +  +DL +    T   C  +   P+L
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

Query: 250 KTISVYDC 257
           + +   + 
Sbjct: 321 EVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 49/289 (16%), Positives = 88/289 (30%), Gaps = 48/289 (16%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL------- 56
                L+ +  + E    +     LC L LS     E+P    +   ++ L L       
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 57  DVFSWFSTELVALHHNFCCATTVLAGLESL----ENIHDISITLCFVDTHAFCRF----- 107
           +       +   L            GLE L    + +  + I     +            
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 108 -------QSSPKLQS---CVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGD 156
                  Q   +L+     V  +T  S    S+   + +L    +V     E I     D
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNES--LESIGTYLKNLCDFRLVLLDREERITDLPLD 425

Query: 157 QGRTY---CFRNLRHLSVK-DCHFMTD--LKWI-RCAPNLQFLYVSDCQVLSEIIGTYES 209
            G        + LR  +       +TD  L +I + +PN++++ +       E       
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE------- 478

Query: 210 PGTSEIEESHHFLSNLMVIDLQHLP-SLTSICCRAVPLPSLKTISVYDC 257
            G  E         NL  ++++    S  +I      LPSL+ + V   
Sbjct: 479 -GLMEFSRG---CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 56/273 (20%), Positives = 86/273 (31%), Gaps = 66/273 (24%)

Query: 4   LAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDVFSW 61
             +L+L  N  +  +   +   L +L  L LS   IR +  G    L NL  L L     
Sbjct: 66  TRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF---- 120

Query: 62  FSTELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSPKLQ 114
               L  + +           L  L+        I  I              F   P L+
Sbjct: 121 -DNRLTTIPNG------AFVYLSKLKELWLRNNPIESIPSYA----------FNRIPSLR 163

Query: 115 ----SCVKRLTVASP-WFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHL 169
                 +KRL+  S   F  L     +L  L +  C+L  I               L  L
Sbjct: 164 RLDLGELKRLSYISEGAFEGL----SNLRYLNLAMCNLREIP-NLTP------LIKLDEL 212

Query: 170 SVKDCHFMT-DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF--LSNLM 226
            +   H         +   +LQ L++   Q +  I                 F  L +L+
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVI-----ERNA--------FDNLQSLV 258

Query: 227 VIDLQHLPSLTSICCRAV-PLPSLKTISVYDCP 258
            I+L H  +LT +      PL  L+ I ++  P
Sbjct: 259 EINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           +  L  L+L  N  L  +P  A   L  L  L L N  I  +P+     + +L+ L L 
Sbjct: 111 LANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           +  L  LDLS N  L  +       L  L  L+L    ++EL  G+ + L  L+ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLDV 58
           + AL  L L  N  L  LP+     L NL HL L   +I  +P    + L +L  L L  
Sbjct: 128 LAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH- 185

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLENIH 90
                  +  +H +          L  L  ++
Sbjct: 186 ----QNRVAHVHPH------AFRDLGRLMTLY 207

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 42/279 (15%), Positives = 90/279 (32%), Gaps = 35/279 (12%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL-- 56
              L VLDLS   ++  +   A   L +L  L L+   I+ L  G    L +L+ L    
Sbjct: 51  FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 57  --------DVFSWFST-ELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRF 107
                          T + + + HN   +  +     +L N+  + ++   + +      
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 108 QSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFR 164
           +   ++      L ++    + +    F+   L  L + +                 C +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL-------NVMKTCIQ 222

Query: 165 NLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIG-----TYESPGTSEIEESH 219
            L  L V        L   R   NL+    S  + L  +        Y      +I +  
Sbjct: 223 GLAGLEVHR----LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 220 HFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP 258
           + L+N+    L  + ++  +   +      + + + +C 
Sbjct: 279 NCLTNVSSFSLVSV-TIERVKDFS-YNFGWQHLELVNCK 315

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYNF--DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRL 56
           + +L  LDLS N         ++     +L +L+LS   +  + +    L+ L+ L  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           +  +  +DLSYN  + ++   +  L  L  LN+    + +   GI+    L  L   
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 46/178 (25%)

Query: 22  IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA 81
             ++ +L ++ L+N  + +L  GI+Y  N+K L ++     +              T   
Sbjct: 40  EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTIN-----NIHA-----------TNYN 82

Query: 82  GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLE 141
            +  L N+  + I    V +           L                LD     +    
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL--------------LD-----ISHSA 123

Query: 142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQV 199
             D  L  IN              +  + +     +TD+  ++  P L+ L +    V
Sbjct: 124 HDDSILTKIN----------TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLS-NTKIRELPAGIKYLKNLKILRLD 57
           + +L +LD+S++     +   I  L  +  ++LS N  I ++   +K L  LK L + 
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 1  MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
          M++L  + L+   ++ +L   I    N+  L ++N         I  L NL+ LR+ 
Sbjct: 43 MNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIM 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 55/372 (14%), Positives = 99/372 (26%), Gaps = 113/372 (30%)

Query: 6   VLDLSYNFDLVEL-------PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDV 58
           VL ++Y F L+         P  + ++       L N         +  L+    LR  +
Sbjct: 86  VLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLEN----------IHDISITLCFVDT------H 102
                 + V +        T +A L+   +          I  +++  C           
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 103 AFCRFQSSPKLQSCVK-------RLTVASPWFSSLDFRMDHLETLEIVD--CSLESINIY 153
               +Q  P   S          R+         L     +   L ++    + ++ N  
Sbjct: 204 KLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-A 261

Query: 154 FGDQGRTYCFRNL---RHLSVKD-------CHFMTD---------------LKWIRCAPN 188
           F       C + L   R   V D        H   D               LK++ C P 
Sbjct: 262 FNLS----C-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP- 315

Query: 189 LQFLYVSDCQ----VLSEIIGTYESPGTSEIEESHHF----LSNLMVIDLQHL-PSLT-- 237
            Q L           LS II      G +  +   H     L+ ++   L  L P+    
Sbjct: 316 -QDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 238 -----SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLEWEDE 292
                S+   +  +P+   +S+                            W+D ++ +  
Sbjct: 374 MFDRLSVFPPSAHIPT-ILLSLI---------------------------WFDVIKSDVM 405

Query: 293 DTKNVFASKFLA 304
              N      L 
Sbjct: 406 VVVNKLHKYSLV 417

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 40/291 (13%), Positives = 74/291 (25%), Gaps = 80/291 (27%)

Query: 3   ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD----- 57
             ++L    +    +LP  +    N   L++    IR+  A     K++   +L      
Sbjct: 303 VKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 58  ------------------VFS-------------WF--STELVALHHNFCCATTVLA--G 82
                             VF              WF      V +  N     +++    
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 83  LESLENIHDISITLCF-----VDTHAFCRFQSSPKLQSCVKRLTVASP---WFSSLDFRM 134
            ES  +I  I + L          H       +         L        ++S      
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIG 478

Query: 135 DHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFL-- 192
            HL+ +E  +       ++           + R L  K  H      W      L  L  
Sbjct: 479 HHLKNIEHPERMTLFRMVFL----------DFRFLEQKIRH--DSTAWNASGSILNTLQQ 526

Query: 193 ------YVSD-CQVLSEIIGTYE----SPGTSEIEESHHFLSNLMVIDLQH 232
                 Y+ D       ++            + I   +   ++L+ I L  
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY---TDLLRIALMA 574

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 47/289 (16%), Positives = 94/289 (32%), Gaps = 36/289 (12%)

Query: 4   LAVLDLSYN-FDLVELPEAIGKLINLCHLNLSNTKIRELP-AGIKYLK-----------N 50
           L  LDLS+N FD++ + +  G L  L  L LS  K R+L    + +L            +
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 51  LKILRLDVFSWFSTEL--VALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQ 108
           +K    +     +T +  +  H N   +  V   + +L ++   +I L   +      F 
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 109 SSPKLQSCVKRLTVASPWFSSLDFRMD-------HLETLEIVDCSLESINIYFGDQGRTY 161
           S       +  +T+     +               +E L I + ++              
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 162 CFRNLRHLSVKDCHFMTDLKWI-RCAPNLQFLYVSDCQVLSEIIGTYESPG--------- 211
             ++L    VK+  F+   + +      +    +S        +    SP          
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 212 ---TSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDC 257
              T  + +    L  L  + LQ    L +    A+   ++ ++   D 
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDV 410

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL 56
           + VLDL  N  ++ +P+ +  L  L  LN+++ +++ +P G+   L +L+ + L
Sbjct: 452 VKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           +  L  LDLS+N  L  LP     L  L  L++S  ++  LP G  + L  L+ L L 
Sbjct: 76  LPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 3   ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
            L  L+L    +L +L    G L  L  L+LS+ +++ LP   + L  L +L + 
Sbjct: 56  RLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 3   ALAVLDLSYNFDLVELPEAI-GKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD--- 57
            L  L L  N +L  LP  +      L  L+L+N  + ELPAG+   L+NL  L L    
Sbjct: 125 ELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 58  -------VFSWFSTELVALHHN 72
                   F         LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 48/262 (18%), Positives = 89/262 (33%), Gaps = 63/262 (24%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
               +L      V       +L ++  +  +N+ I+ +  GI+YL N+  L L+      
Sbjct: 26  TIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN------ 76

Query: 64  TELVALHHNFCCATTVLAGLESLE-------NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
                   N       LA L++L         + D+S              +   KL+S 
Sbjct: 77  -------GNKLTDIKPLANLKNLGWLFLDENKVKDLS------------SLKDLKKLKS- 116

Query: 117 VKRLTVASPWFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174
              L++     S ++    +  LE+L + +  +  I +             L  LS++D 
Sbjct: 117 ---LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR-------LTKLDTLSLEDN 166

Query: 175 HFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234
             ++D+  +     LQ LY+S   +             S++      L NL V++L    
Sbjct: 167 Q-ISDIVPLAGLTKLQNLYLSKNHI-------------SDLRALAG-LKNLDVLELFSQE 211

Query: 235 SLTSICCRAVPLPSLKTISVYD 256
            L         L    T+   D
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 53/204 (25%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  +  L L+ N  L ++ + +  L NL  L L   K+++L   +K LK LK L L+   
Sbjct: 67  LPNVTKLFLNGN-KLTDI-KPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE--- 120

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRL 120
                     HN     + + GL  L  +  + +               + K+       
Sbjct: 121 ----------HN---GISDINGLVHLPQLESLYL--------------GNNKITD----- 148

Query: 121 TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180
                  + L  R+  L+TL + D  +  I    G          L++L +   H  +DL
Sbjct: 149 ------ITVLS-RLTKLDTLSLEDNQISDIVPLAG-------LTKLQNLYLSKNHI-SDL 193

Query: 181 KWIRCAPNLQFLYVSDCQVLSEII 204
           + +    NL  L +   + L++ I
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPI 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1   MHALAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
           +  L  L L +N  L  E+P  +    NL  ++LSN ++  E+P  I  L+NL IL+L
Sbjct: 465 VKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
              L  LD+S N     +P  +G    L HL++S  K+  +    I     LK+L +
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 1   MHALAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLD 57
           +  L  L L  N  L  E+P+ +  +  L  L L    +  E+P+G+    NL  + L 
Sbjct: 441 LSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           +  L VL L  N  +  +   +  L NL +L++ N ++ +L   +  L  L  L+ D
Sbjct: 128 LSNLQVLYLDLN-QITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKAD 181

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           + ++  LDL+    + ++   +  L NL  L L   +I  +   +  L NL+ L + 
Sbjct: 106 LQSIKTLDLTST-QITDV-TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIG 159

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 43/205 (20%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           ++ L  L+L  N  + +L   +  L  +  L LS   ++ +   I  L+++K   LD+ S
Sbjct: 62  LNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK--TLDLTS 116

Query: 61  WFSTELVALHHNFCCATTVLAGLESLE----NIHDISITLCFVDTHAFCRFQSSPKLQSC 116
              T++  L          L+ L+ L      I +IS                   LQ  
Sbjct: 117 TQITDVTPLAG--------LSNLQVLYLDLNQITNISP------------LAGLTNLQY- 155

Query: 117 VKRLTVASPWFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC 174
              L++ +   S L     +  L TL+  D  +  I+             NL  + +K+ 
Sbjct: 156 ---LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS-------LPNLIEVHLKNN 205

Query: 175 HFMTDLKWIRCAPNLQFLYVSDCQV 199
             ++D+  +    NL  + +++  +
Sbjct: 206 Q-ISDVSPLANTSNLFIVTLTNQTI 229

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 60/237 (25%)

Query: 1   MHALAVLDLSYNF--DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDV 58
           + +L  LDLS N         ++     +L +L+LS   +  + +    L+ L+ L    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ- 404

Query: 59  FSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVK 118
            S                 +V   L +L  + DIS              + +        
Sbjct: 405 HSNLKQMS---------EFSVFLSLRNLIYL-DIS----------HTHTRVAF------- 437

Query: 119 RLTVASPWFSSLDFRMDHLETLEIVDCSLESINIY--FGDQGRTYCFRNLRHLSVKDCHF 176
                +  F+ L      LE L++   S +   +   F +       RNL  L +  C  
Sbjct: 438 -----NGIFNGLS----SLEVLKMAGNSFQENFLPDIFTE------LRNLTFLDLSQCQL 482

Query: 177 MT-DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH 232
                       +LQ L +S                 S     +  L++L V+D   
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNF------------FSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRL 56
           +  L+ L L+ N        A   L +L  L    T +  L    I +LK LK L +
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           + VLDL  N  +  +P+ + KL  L  LN+++ +++ +P GI   L +L+ + L 
Sbjct: 423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 6  VLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRL 56
          +L++S N  + EL    I  L  L  L +S+ +I+ L   + K+ + L+ L L
Sbjct: 25 ILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1  MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
          +  +   +   + ++  L   +    NL  L+LS+ +I +L   +K L  L+ L ++
Sbjct: 40 LSGVQNFNGDNS-NIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVN 93

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 35/201 (17%), Positives = 75/201 (37%), Gaps = 38/201 (18%)

Query: 7   LDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTEL 66
            +L      V    +  +L  + + N  N+ I+ L  G+++  NLK L L          
Sbjct: 24  QNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS--------- 71

Query: 67  VALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCV-KRLTVASP 125
               HN     + L+ L+ L  + ++S+           R ++   + S    RL + + 
Sbjct: 72  ----HN---QISDLSPLKDLTKLEELSV--------NRNRLKNLNGIPSACLSRLFLDNN 116

Query: 126 WFSSLDF--RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWI 183
                D    + +LE L I +  L+SI +             L  L +     +T+   +
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGF-------LSKLEVLDLHGNE-ITNTGGL 168

Query: 184 RCAPNLQFLYVSDCQVLSEII 204
                + ++ ++  + ++E +
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPV 189

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 1   MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           +  L  L +      + +       L +L  L L   +  +L  G    L NL++L L 
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 4   LAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRL 56
           L  L +    +LV  +P AI KL  L +L +++T +   +P  +  +K L  L  
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 1   MHALAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLD 57
           +  L  L +++  ++   +P+ + ++  L  L+ S   +   LP  I  L NL  +  D
Sbjct: 100 LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAI-GKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
           +  L  LDLS N  L  L E +   L  L  L L N  I  +     + +  L+ L L 
Sbjct: 87  VPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 3   ALAVLDLSYNFDLVELPEAI-GKLINLCHLNLSNTKIRELPAGI-KYLKNLKILRLD 57
            L +L L+ N  L  LP  I  +L NL  L +++ K++ LP G+   L NL  LRLD
Sbjct: 62  KLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1   MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG--IKYLKNLKILRL 56
           +  +  +++    +L  +  +A+ +L  L  L + NT ++  P    +       IL +
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.36
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.09
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.97
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.78
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.74
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.74
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.01
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.35
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.08

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.3e-24  Score=187.92  Aligned_cols=236  Identities=19%  Similarity=0.232  Sum_probs=172.6

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      +++++|++++| .++.+|..++++++|++|++++|.+..+|..++.+++|++|++++|.+               ..++.
T Consensus        81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l---------------~~lp~  144 (328)
T 4fcg_A           81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL---------------RALPA  144 (328)
T ss_dssp             TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC---------------CCCCG
T ss_pred             cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc---------------ccCcH
Confidence            56888899988 788888888888999999999888888888888899999999988874               35677


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCccc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTY  161 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  161 (305)
                      .+..+++|+.|++++|.........          +....+.     .....+++|+.|++++|.++.++..+      .
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~----------~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~lp~~l------~  203 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEP----------LASTDAS-----GEHQGLVNLQSLRLEWTGIRSLPASI------A  203 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSC----------SEEEC-C-----CCEEESTTCCEEEEEEECCCCCCGGG------G
T ss_pred             HHhcCcCCCEEECCCCCCccccChh----------Hhhccch-----hhhccCCCCCEEECcCCCcCcchHhh------c
Confidence            7888888888888884221111111          1110000     00034788888888888877776554      6


Q ss_pred             CCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceec
Q 044279          162 CFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC  240 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  240 (305)
                      .+++|++|++++| .++.++ .+..+++|++|++++|.....++.            .++.+++|+.|++++|...+.++
T Consensus       204 ~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          204 NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP------------IFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC------------CTTCCCCCCEEECTTCTTCCBCC
T ss_pred             CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH------------HhcCCCCCCEEECCCCCchhhcc
Confidence            7888899999888 555554 566788899999988887666554            67788889999999887777888


Q ss_pred             CCCCCCCCCceEEeeCCCCCCCCCCCCccccCcCceEeCCcccccccc
Q 044279          241 CRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIRGSREWWDQLE  288 (305)
Q Consensus       241 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i~~~~~~~~~l~  288 (305)
                      .....+++|+.|++++|+.++.+|..+..+++ ...+.........++
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~-L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-NCIILVPPHLQAQLD  317 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT-TCEEECCGGGSCC--
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHhhccC-ceEEeCCHHHHHHHh
Confidence            77778888999999888888888888887753 344444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=3.5e-22  Score=174.11  Aligned_cols=193  Identities=19%  Similarity=0.238  Sum_probs=150.1

Q ss_pred             ccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccc
Q 044279           25 LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF  104 (305)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  104 (305)
                      ..+++.|+++++++..+|..++.+++|++|++++|.+               ..++..+..+++|+.|++++  +....+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l---------------~~lp~~~~~l~~L~~L~Ls~--n~l~~l  142 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL---------------MELPDTMQQFAGLETLTLAR--NPLRAL  142 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC---------------CCCCSCGGGGTTCSEEEEES--CCCCCC
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc---------------cchhHHHhccCCCCEEECCC--CccccC
Confidence            4789999999999999999999999999999999984               36677888899999999888  332222


Q ss_pred             cccccCCCccccceEEEEEcCCCccccccCCCccEEEEecee-cceecccccC---CCcccCCCccceEeeeCCCCCccC
Q 044279          105 CRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCS-LESINIYFGD---QGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       105 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      +..         +              ..+++|+.|++++|. +..++..+..   .+.+..+++|++|++++| .++.+
T Consensus       143 p~~---------l--------------~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l  198 (328)
T 4fcg_A          143 PAS---------I--------------ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL  198 (328)
T ss_dssp             CGG---------G--------------GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC
T ss_pred             cHH---------H--------------hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc
Confidence            110         0              346677777777766 5555543310   000245899999999999 66676


Q ss_pred             C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279          181 K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       181 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  259 (305)
                      | .+..+++|++|++++|.. ..++.            .++.+++|++|++++|...+.++.....+++|+.|++++|..
T Consensus       199 p~~l~~l~~L~~L~L~~N~l-~~l~~------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          199 PASIANLQNLKSLKIRNSPL-SALGP------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             CGGGGGCTTCCEEEEESSCC-CCCCG------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             hHhhcCCCCCCEEEccCCCC-CcCch------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence            5 577899999999999764 34444            678899999999999977888888888999999999999999


Q ss_pred             CCCCCCCCcccc
Q 044279          260 LRKLPLNSGSAK  271 (305)
Q Consensus       260 l~~~~~~~~~~~  271 (305)
                      .+.+|..+..++
T Consensus       266 ~~~~p~~~~~l~  277 (328)
T 4fcg_A          266 LLTLPLDIHRLT  277 (328)
T ss_dssp             CCBCCTTGGGCT
T ss_pred             hhhcchhhhcCC
Confidence            999998887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.5e-22  Score=175.33  Aligned_cols=224  Identities=15%  Similarity=0.152  Sum_probs=159.7

Q ss_pred             CcccEEeCCCCCCcc---ccchhhhcccccccccccC-Cccc-cCCcccccccccceeeccccceeeceEEEeecccccc
Q 044279            2 HALAVLDLSYNFDLV---ELPEAIGKLINLCHLNLSN-TKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCA   76 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~-~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~   76 (305)
                      .+++.|+++++ .+.   .+|..++++++|++|++++ +++. .+|..++.+++|++|++++|.+              .
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------------~  114 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV--------------S  114 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC--------------E
T ss_pred             ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee--------------C
Confidence            46888999999 665   5788899999999999985 7666 7888899999999999999875              2


Q ss_pred             ccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCC-CccEEEEeceeccee-
Q 044279           77 TTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMD-HLETLEIVDCSLESI-  150 (305)
Q Consensus        77 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~-~L~~L~l~~~~l~~~-  150 (305)
                      ...+..+..+++|+.|+++.+.........+...    ++|++|+++.+.++ .++   ..++ .|+.|++++|.++.. 
T Consensus       115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l----~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~  190 (313)
T 1ogq_A          115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC----TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred             CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC----CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence            3566778888999999888743222222233333    34888888866665 444   4555 889999998886643 


Q ss_pred             cccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279          151 NIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI  228 (305)
Q Consensus       151 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  228 (305)
                      +..+      ..++ |+.|++++| .++.. + .+..+++|+.|++++|..... ++            .+..+++|++|
T Consensus       191 ~~~~------~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~------------~~~~l~~L~~L  249 (313)
T 1ogq_A          191 PPTF------ANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG------------KVGLSKNLNGL  249 (313)
T ss_dssp             CGGG------GGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCB-GG------------GCCCCTTCCEE
T ss_pred             ChHH------hCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeee-cC------------cccccCCCCEE
Confidence            3333      4454 889999888 55433 2 567788899999988764322 22            24567888888


Q ss_pred             eccCcccCc-eecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          229 DLQHLPSLT-SICCRAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       229 ~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      ++++| .++ .++.....+++|+.|++++|..-..+|..
T Consensus       250 ~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          250 DLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             ECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            88888 454 56666667888888888887544466654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=4e-21  Score=171.27  Aligned_cols=80  Identities=18%  Similarity=0.262  Sum_probs=54.3

Q ss_pred             CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +++|++|++++| .+..++. .+..+++|++|++++|++..+|.. ++.+++|++|++++|.+.               .
T Consensus        68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------~  131 (390)
T 3o6n_A           68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS---------------S  131 (390)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------C
T ss_pred             cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC---------------c
Confidence            467888888888 6676654 577788888888888877766543 677788888888877642               3


Q ss_pred             cccc-ccCccCccceeEEE
Q 044279           79 VLAG-LESLENIHDISITL   96 (305)
Q Consensus        79 ~~~~-l~~l~~L~~L~l~~   96 (305)
                      ++.. +..+++|+.|++++
T Consensus       132 l~~~~~~~l~~L~~L~L~~  150 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSN  150 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCS
T ss_pred             CCHHHhcCCCCCcEEECCC
Confidence            3333 35566666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=172.17  Aligned_cols=225  Identities=22%  Similarity=0.243  Sum_probs=116.0

Q ss_pred             CcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      ++|++|++++| .++.+ |..+.++++|++|++++|++..+|.. +..+++|++|++++|.+.              ...
T Consensus        56 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~  120 (477)
T 2id5_A           56 PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--------------ILL  120 (477)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC--------------EEC
T ss_pred             CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc--------------cCC
Confidence            44555555555 44443 33455555555555555555555443 445555555555555431              222


Q ss_pred             cccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceeccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIY  153 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~  153 (305)
                      +..+..+++|+.|++..  +....+  ..+...    .+|+.|+++.+.++.++    ..+++|+.|++++|.+..++..
T Consensus       121 ~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  194 (477)
T 2id5_A          121 DYMFQDLYNLKSLEVGD--NDLVYISHRAFSGL----NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY  194 (477)
T ss_dssp             TTTTTTCTTCCEEEECC--TTCCEECTTSSTTC----TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred             hhHccccccCCEEECCC--CccceeChhhccCC----CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence            34455666666666655  222111  112222    23666666655555444    4566666666666665555433


Q ss_pred             ccCCCcccCCCccceEeeeCCCCC-----------------------ccCC--cCCCCCCCCEEEEeccccccccccccC
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCHFM-----------------------TDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYE  208 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~~l-----------------------~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~  208 (305)
                      ..     ..+++|+.|++++|..+                       +.++  .+..+++|++|++++|. +..++.   
T Consensus       195 ~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---  265 (477)
T 2id5_A          195 SF-----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG---  265 (477)
T ss_dssp             CS-----CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT---
T ss_pred             hc-----ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh---
Confidence            21     34455555555544333                       3332  23344555555555543 222222   


Q ss_pred             CCCCccccccccccCccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          209 SPGTSEIEESHHFLSNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                              ..+..+++|+.|+++++ .++.+ +.....+++|+.|++++| .++.++..
T Consensus       266 --------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  314 (477)
T 2id5_A          266 --------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES  314 (477)
T ss_dssp             --------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred             --------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHh
Confidence                    24556777777777777 55554 334456788888888766 55655543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.5e-20  Score=176.60  Aligned_cols=60  Identities=20%  Similarity=0.265  Sum_probs=38.4

Q ss_pred             CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccce
Q 044279            1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSW   61 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~   61 (305)
                      +++|++|++++| .+..++. .++.+++|++|++++|.+..+|.. ++.+++|++|++++|.+
T Consensus        74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  135 (597)
T 3oja_B           74 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL  135 (597)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence            356677777776 5565543 566667777777777666655543 56667777777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=1.8e-20  Score=163.34  Aligned_cols=217  Identities=18%  Similarity=0.189  Sum_probs=124.9

Q ss_pred             cccEEeCCCCCCccccch-hhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      ++++|++++| .++.++. .++++++|++|++++|++..+ |..++.+++|++|++++|.+               ..++
T Consensus        53 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------~~l~  116 (330)
T 1xku_A           53 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL---------------KELP  116 (330)
T ss_dssp             TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC---------------SBCC
T ss_pred             CCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC---------------CccC
Confidence            4566666666 5555543 456666666666666666544 44566666666666666653               1222


Q ss_pred             ccccCccCccceeEEEeecCccccc--ccccCCCccccceEEEEEcCCCccc--c----ccCCCccEEEEeceecceecc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFC--RFQSSPKLQSCVKRLTVASPWFSSL--D----FRMDHLETLEIVDCSLESINI  152 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~L~~L~l~~~~l~~~~~  152 (305)
                      ..+.  ++|+.|+++.  +......  .+...    ++|+.|+++.+.+...  .    ..+++|+.|++++|.++.++.
T Consensus       117 ~~~~--~~L~~L~l~~--n~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~  188 (330)
T 1xku_A          117 EKMP--KTLQELRVHE--NEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  188 (330)
T ss_dssp             SSCC--TTCCEEECCS--SCCCBBCHHHHTTC----TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             hhhc--ccccEEECCC--CcccccCHhHhcCC----ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence            2222  4566666555  2221111  12222    2366666664444321  1    456667777776666665553


Q ss_pred             cccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279          153 YFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL  230 (305)
Q Consensus       153 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  230 (305)
                      .        ..++|++|++++| .++.+  ..+..+++|++|++++|.. ..+++           ..+..+++|+.|++
T Consensus       189 ~--------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-----------~~~~~l~~L~~L~L  247 (330)
T 1xku_A          189 G--------LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSI-SAVDN-----------GSLANTPHLRELHL  247 (330)
T ss_dssp             S--------CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCC-CEECT-----------TTGGGSTTCCEEEC
T ss_pred             c--------ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-ceeCh-----------hhccCCCCCCEEEC
Confidence            2        2366777777777 45444  2466677777777777553 33322           24567788888888


Q ss_pred             cCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          231 QHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       231 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      ++| .++.++.....+++|++|++++| .++.++..
T Consensus       248 ~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~  281 (330)
T 1xku_A          248 NNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  281 (330)
T ss_dssp             CSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             CCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence            888 67777776777888888888766 45555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=2.1e-20  Score=176.82  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=146.8

Q ss_pred             CcccEEeCCCCCCccccch--hhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeecccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE--AIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      ++|++|++++| .++.+|.  .++++++|++|++++|++. .+| .++.+++|++|++++|.+.               .
T Consensus       305 ~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~---------------~  367 (636)
T 4eco_A          305 EKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT---------------E  367 (636)
T ss_dssp             GTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE---------------E
T ss_pred             CCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc---------------c
Confidence            68899999999 7778888  7889999999999998888 888 8888889999999888743               4


Q ss_pred             ccccccCccC-ccceeEEEeecCcccccccccCCC------------------------------ccccceEEEEEcCCC
Q 044279           79 VLAGLESLEN-IHDISITLCFVDTHAFCRFQSSPK------------------------------LQSCVKRLTVASPWF  127 (305)
Q Consensus        79 ~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~------------------------------~~~~L~~L~l~~~~~  127 (305)
                      ++..+..+++ |+.|++++  +....++.......                              ...+|+.|+++.+.+
T Consensus       368 lp~~l~~l~~~L~~L~Ls~--N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l  445 (636)
T 4eco_A          368 IPANFCGFTEQVENLSFAH--NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI  445 (636)
T ss_dssp             CCTTSEEECTTCCEEECCS--SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred             ccHhhhhhcccCcEEEccC--CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence            4445555555 66665555  22222221111000                              112366666665555


Q ss_pred             cccc----ccCCCccEEEEeceecceecccccCCCc--ccCCCccceEeeeCCCCCccCC-cCC--CCCCCCEEEEeccc
Q 044279          128 SSLD----FRMDHLETLEIVDCSLESINIYFGDQGR--TYCFRNLRHLSVKDCHFMTDLK-WIR--CAPNLQFLYVSDCQ  198 (305)
Q Consensus       128 ~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~l~~~~-~~~--~~~~L~~L~l~~~~  198 (305)
                      +.++    ..+++|+.|++++|.++.++........  ...+++|++|++++| .++.++ .+.  .+++|++|++++|.
T Consensus       446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~  524 (636)
T 4eco_A          446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS  524 (636)
T ss_dssp             CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC
T ss_pred             CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC
Confidence            5554    3456677777777666655544320000  011226777777777 555554 333  67777777777765


Q ss_pred             cccccccccCCCCCccccccccccCccceeeccC------cccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCc
Q 044279          199 VLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH------LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSG  268 (305)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  268 (305)
                      .. .++.            .+..+++|+.|++++      +...+.++.....+++|+.|++++|. ++.+|..+.
T Consensus       525 l~-~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~  586 (636)
T 4eco_A          525 FS-KFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT  586 (636)
T ss_dssp             CS-SCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred             CC-CcCh------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh
Confidence            33 2333            666788888888854      32344566666678888888887774 477777644

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=1.1e-20  Score=163.85  Aligned_cols=212  Identities=18%  Similarity=0.110  Sum_probs=161.3

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      ++|++|++++| .++.++ ..+.++++|++|++++|++..++. +..+++|++|++++|.+..                 
T Consensus        34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-----------------   94 (317)
T 3o53_A           34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-----------------   94 (317)
T ss_dssp             GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-----------------
T ss_pred             CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-----------------
Confidence            57889999998 777765 568889999999999998876654 8888999999999887532                 


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGD  156 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~  156 (305)
                        +...++|+.|++++  +.......   .  ..++|+.|+++.+.++.++    ..+++|+.|++++|.++.++.... 
T Consensus        95 --l~~~~~L~~L~l~~--n~l~~~~~---~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-  164 (317)
T 3o53_A           95 --LLVGPSIETLHAAN--NNISRVSC---S--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-  164 (317)
T ss_dssp             --EEECTTCCEEECCS--SCCSEEEE---C--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-
T ss_pred             --ccCCCCcCEEECCC--CccCCcCc---c--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-
Confidence              22337888888877  33322221   1  1244999999977776654    567899999999998777654432 


Q ss_pred             CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       157 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                         ...+++|++|++++| .++.++....+++|++|++++|. +..+++            .+..+++|+.|++++| .+
T Consensus       165 ---~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~L~~N-~l  226 (317)
T 3o53_A          165 ---AASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGP------------EFQSAAGVTWISLRNN-KL  226 (317)
T ss_dssp             ---GGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECG------------GGGGGTTCSEEECTTS-CC
T ss_pred             ---hhccCcCCEEECCCC-cCcccccccccccCCEEECCCCc-CCcchh------------hhcccCcccEEECcCC-cc
Confidence               246789999999998 77777666678999999999965 445554            4678899999999998 88


Q ss_pred             ceecCCCCCCCCCceEEeeCCCCC
Q 044279          237 TSICCRAVPLPSLKTISVYDCPGL  260 (305)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~c~~l  260 (305)
                      +.++.....+++|+.|++++++..
T Consensus       227 ~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          227 VLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cchhhHhhcCCCCCEEEccCCCcc
Confidence            888887778899999999888654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=6.4e-20  Score=166.60  Aligned_cols=113  Identities=17%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             CCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCC
Q 044279          135 DHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGT  212 (305)
Q Consensus       135 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  212 (305)
                      ++|+.|++++|.+++.....     +..+++|++|++++| .++.++  .+..+++|++|++++|.. ..+++       
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-------  340 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSV-----FSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDS-------  340 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTT-----TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECG-------
T ss_pred             cCceEEEecCccccccchhh-----cccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CCcCh-------
Confidence            34555555555544443332     256677777787777 555442  566777888888887653 33332       


Q ss_pred             ccccccccccCccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCCC
Q 044279          213 SEIEESHHFLSNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLNS  267 (305)
Q Consensus       213 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~  267 (305)
                          ..+..+++|++|++++| .++.+ +.....+++|++|++++| .++.+|...
T Consensus       341 ----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  390 (455)
T 3v47_A          341 ----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI  390 (455)
T ss_dssp             ----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             ----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhH
Confidence                35678899999999998 66666 555668899999999876 667776643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=3.5e-20  Score=162.53  Aligned_cols=221  Identities=16%  Similarity=0.235  Sum_probs=113.3

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEE----------Eee
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELV----------ALH   70 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~----------l~~   70 (305)
                      +++|++|++++| .++.++. +.++++|++|++++|.+..+| .++.+++|++|++++|.+.....+          +.+
T Consensus        65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA  141 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred             cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCC
Confidence            568888899888 7777776 788888888888888888775 578888888888888875321000          000


Q ss_pred             ccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecc
Q 044279           71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLE  148 (305)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~  148 (305)
                      +.   ....+..+..+++|+.|++..  +.......+...    ++|++|+++.+.+..++  ..+++|+.+++++|.++
T Consensus       142 n~---~~~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          142 NH---NLSDLSPLSNMTGLNYLTVTE--SKVKDVTPIANL----TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             CT---TCCCCGGGTTCTTCCEEECCS--SCCCCCGGGGGC----TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CC---CcccccchhhCCCCcEEEecC--CCcCCchhhccC----CCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence            00   111112233334444444433  111111111111    22444444433333333  33444444444444433


Q ss_pred             eecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279          149 SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI  228 (305)
Q Consensus       149 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  228 (305)
                      +.+.       ...+++|++|++++| .++.++.+..+++|++|++++|.. ..++             .+..+++|++|
T Consensus       213 ~~~~-------~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~-------------~~~~l~~L~~L  270 (347)
T 4fmz_A          213 DITP-------VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQI-SDIN-------------AVKDLTKLKML  270 (347)
T ss_dssp             CCGG-------GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGTTCTTCCEE
T ss_pred             CCch-------hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCcc-CCCh-------------hHhcCCCcCEE
Confidence            3322       134555666666655 444444455556666666665432 2211             23445555555


Q ss_pred             eccCcccCceecCCCCCCCCCceEEeeCC
Q 044279          229 DLQHLPSLTSICCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       229 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  257 (305)
                      ++++| .++.++. ...+++|+.|++++|
T Consensus       271 ~l~~n-~l~~~~~-~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          271 NVGSN-QISDISV-LNNLSQLNSLFLNNN  297 (347)
T ss_dssp             ECCSS-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred             EccCC-ccCCChh-hcCCCCCCEEECcCC
Confidence            55555 4444432 334555555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=5.1e-20  Score=178.34  Aligned_cols=232  Identities=16%  Similarity=0.124  Sum_probs=126.3

Q ss_pred             cccEEeCCCCCCccccch--hhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPE--AIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +|++|++++| .+..+|.  .++++++|++|++++|++..+| .++.+++|++|++++|.+               ..++
T Consensus       549 ~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l---------------~~lp  611 (876)
T 4ecn_A          549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQI---------------EEIP  611 (876)
T ss_dssp             TCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCC---------------SCCC
T ss_pred             CccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcc---------------ccch
Confidence            4445555554 4444444  4455555555555555444444 444455555555555442               2555


Q ss_pred             ccccCccC-ccceeEEEeecCcccccccccCCC----------------------------ccccceEEEEEcCCCcccc
Q 044279           81 AGLESLEN-IHDISITLCFVDTHAFCRFQSSPK----------------------------LQSCVKRLTVASPWFSSLD  131 (305)
Q Consensus        81 ~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~----------------------------~~~~L~~L~l~~~~~~~~~  131 (305)
                      ..+..+++ |+.|+++.  +....++.......                            ...+|+.|+++.|.+..++
T Consensus       612 ~~l~~l~~~L~~L~Ls~--N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp  689 (876)
T 4ecn_A          612 EDFCAFTDQVEGLGFSH--NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP  689 (876)
T ss_dssp             TTSCEECTTCCEEECCS--SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred             HHHhhccccCCEEECcC--CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence            66777776 77777776  33222222111110                            0013555666555555444


Q ss_pred             ----ccCCCccEEEEeceecceecccccCCCc--ccCCCccceEeeeCCCCCccCC-cCC--CCCCCCEEEEeccccccc
Q 044279          132 ----FRMDHLETLEIVDCSLESINIYFGDQGR--TYCFRNLRHLSVKDCHFMTDLK-WIR--CAPNLQFLYVSDCQVLSE  202 (305)
Q Consensus       132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~l~~~~-~~~--~~~~L~~L~l~~~~~~~~  202 (305)
                          ..+++|+.|++++|.++.++........  ..++++|+.|+|++| .++.+| .+.  .+++|+.|++++|.. ..
T Consensus       690 ~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~  767 (876)
T 4ecn_A          690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCF-SS  767 (876)
T ss_dssp             HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCC-SS
T ss_pred             HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCC-Cc
Confidence                3456666677666666655544321000  012236777777776 555554 333  567777777777553 22


Q ss_pred             cccccCCCCCccccccccccCccceeeccC------cccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCc
Q 044279          203 IIGTYESPGTSEIEESHHFLSNLMVIDLQH------LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSG  268 (305)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  268 (305)
                      ++            ..+..+++|+.|+|++      |.....++.....+++|+.|++++|.. +.+|..+.
T Consensus       768 lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          768 FP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             CC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             cc------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            33            3566788888888876      322345666666788888888877744 77777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=1.6e-20  Score=161.85  Aligned_cols=218  Identities=20%  Similarity=0.210  Sum_probs=129.0

Q ss_pred             CcccEEeCCCCCCccccchh-hhcccccccccccCCccccC---CcccccccccceeeccccceeeceEEEeeccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIREL---PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT   77 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~   77 (305)
                      ++|++|++++| .++.+|.. +.++++|++|++++|++..+   |..+..+++|++|++++|.+               .
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i---------------~   91 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---------------I   91 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE---------------E
T ss_pred             CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc---------------c
Confidence            35777777777 66677654 56777777777777766543   44556677777777777763               2


Q ss_pred             cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecce--ec
Q 044279           78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLES--IN  151 (305)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~--~~  151 (305)
                      .++..+..+++|+.|++++  +........... ...++|+.|+++.+.+....    ..+++|+.|++++|.+++  .+
T Consensus        92 ~l~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQH--SNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EEEEEEETCTTCCEEECTT--SEEESSTTTTTT-TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             cChhhcCCCCCCCEEECCC--Ccccccccchhh-hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            3445566777777777766  222222110111 11233777777754444332    456677777777777543  33


Q ss_pred             ccccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279          152 IYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID  229 (305)
Q Consensus       152 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  229 (305)
                      ..+      ..+++|++|++++| .++.+  ..+..+++|++|++++|.. ..++.           ..+..+++|+.|+
T Consensus       169 ~~~------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~  229 (306)
T 2z66_A          169 DIF------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDT-----------FPYKCLNSLQVLD  229 (306)
T ss_dssp             SCC------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-SBCCS-----------GGGTTCTTCCEEE
T ss_pred             hHH------hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCcc-CccCh-----------hhccCcccCCEeE
Confidence            222      56677777777777 55544  2455677777777777553 33222           2345677777777


Q ss_pred             ccCcccCce-ecCCCCCCC-CCceEEeeCCC
Q 044279          230 LQHLPSLTS-ICCRAVPLP-SLKTISVYDCP  258 (305)
Q Consensus       230 l~~~~~l~~-~~~~~~~~~-~L~~L~l~~c~  258 (305)
                      +++| .++. .+.....++ +|+.|++++++
T Consensus       230 L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          230 YSLN-HIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence            7777 4443 333344553 67777776664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=3.5e-20  Score=174.10  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=66.7

Q ss_pred             CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +++|++|++++| .++.+|+ .++++++|++|++++|.+..+|.. ++.+++|++|++++|.+.              ..
T Consensus        98 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~~  162 (597)
T 3oja_B           98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------RI  162 (597)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------BC
T ss_pred             CCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC--------------CC
Confidence            578999999999 7887765 479999999999999999988877 589999999999999752              23


Q ss_pred             ccccccCccCccceeEEEe
Q 044279           79 VLAGLESLENIHDISITLC   97 (305)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~~   97 (305)
                      .+..+..+++|+.|+++++
T Consensus       163 ~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          163 EDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CTTTTTTCTTCCEEECTTS
T ss_pred             ChhhhhcCCcCcEEECcCC
Confidence            3456777888888888773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=3.4e-20  Score=162.57  Aligned_cols=217  Identities=16%  Similarity=0.201  Sum_probs=165.3

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|++++| .+..++. +..+++|++|++++|.....+..+..+++|++|++++|.+.               .. 
T Consensus       109 l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~---------------~~-  170 (347)
T 4fmz_A          109 LTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK---------------DV-  170 (347)
T ss_dssp             CTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC---------------CC-
T ss_pred             CCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC---------------Cc-
Confidence            578999999999 8888877 89999999999999954433445899999999999999743               22 


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      ..+..+++|+.|++++  +....+..+...    ++|+.++++.+.+...+  ..+++|+.|++++|.+++.+. +    
T Consensus       171 ~~~~~l~~L~~L~l~~--n~l~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~----  239 (347)
T 4fmz_A          171 TPIANLTDLYSLSLNY--NQIEDISPLASL----TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-L----  239 (347)
T ss_dssp             GGGGGCTTCSEEECTT--SCCCCCGGGGGC----TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G----
T ss_pred             hhhccCCCCCEEEccC--CcccccccccCC----CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-h----
Confidence            2278889999999988  444444333333    34889999866666655  778899999999998777664 2    


Q ss_pred             cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS  238 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  238 (305)
                        ..+++|++|++++| .++.++.+..+++|++|++++|.. ..++             .+..+++|+.|++++| .++.
T Consensus       240 --~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~-------------~~~~l~~L~~L~L~~n-~l~~  301 (347)
T 4fmz_A          240 --ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDIS-------------VLNNLSQLNSLFLNNN-QLGN  301 (347)
T ss_dssp             --TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCCG-------------GGGGCTTCSEEECCSS-CCCG
T ss_pred             --hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCCh-------------hhcCCCCCCEEECcCC-cCCC
Confidence              57899999999998 777777788899999999999753 3332             4567899999999998 4543


Q ss_pred             e-cCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          239 I-CCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       239 ~-~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      . +.....+++|+.|++++|+ +..++.
T Consensus       302 ~~~~~l~~l~~L~~L~L~~n~-l~~~~~  328 (347)
T 4fmz_A          302 EDMEVIGGLTNLTTLFLSQNH-ITDIRP  328 (347)
T ss_dssp             GGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred             cChhHhhccccCCEEEccCCc-cccccC
Confidence            3 3334578999999998885 454433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=167.04  Aligned_cols=214  Identities=21%  Similarity=0.274  Sum_probs=160.8

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++|++++| .+..++ ..+.++++|++|++++|++..++. .+..+++|++|++++|.+               ..+
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l---------------~~~  127 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL---------------TTI  127 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC---------------SSC
T ss_pred             CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC---------------Cee
Confidence            46889999999 777775 568899999999999998887664 488899999999999874               233


Q ss_pred             c-ccccCccCccceeEEEeecCcccccc--cccCCCccccceEEEEE-cCCCcccc----ccCCCccEEEEeceecceec
Q 044279           80 L-AGLESLENIHDISITLCFVDTHAFCR--FQSSPKLQSCVKRLTVA-SPWFSSLD----FRMDHLETLEIVDCSLESIN  151 (305)
Q Consensus        80 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~~~~~L~~L~l~-~~~~~~~~----~~~~~L~~L~l~~~~l~~~~  151 (305)
                      + ..+..+++|+.|++++  +....+..  +..    .++|+.|+++ ++.+..++    ..+++|+.|++++|.++.++
T Consensus       128 ~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~----l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          128 PNGAFVYLSKLKELWLRN--NPIESIPSYAFNR----IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             CTTTSCSCSSCCEEECCS--CCCCEECTTTTTT----CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CHhHhhccccCceeeCCC--CcccccCHHHhhh----CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            3 4578888999999888  33332221  222    2348889988 67666655    66888999999998887776


Q ss_pred             ccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279          152 IYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID  229 (305)
Q Consensus       152 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  229 (305)
                      .       ...+++|+.|+|++| .++.++  .+..+++|++|++++|. +..+.+           ..+..+++|+.|+
T Consensus       202 ~-------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~  261 (440)
T 3zyj_A          202 N-------LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER-----------NAFDNLQSLVEIN  261 (440)
T ss_dssp             C-------CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECT-----------TSSTTCTTCCEEE
T ss_pred             c-------cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEECh-----------hhhcCCCCCCEEE
Confidence            3       257888999999998 666652  57788899999999865 444433           3567889999999


Q ss_pred             ccCcccCceecCCC-CCCCCCceEEeeCCC
Q 044279          230 LQHLPSLTSICCRA-VPLPSLKTISVYDCP  258 (305)
Q Consensus       230 l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~  258 (305)
                      |++| .++.++... ..+++|+.|++++++
T Consensus       262 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          262 LAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            9998 777776543 468899999998876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=4.9e-20  Score=160.55  Aligned_cols=216  Identities=18%  Similarity=0.220  Sum_probs=169.0

Q ss_pred             CCcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++|++|++++| .++.+ |..++++++|++|++++|++..+|..+.  ++|++|++++|.+.              ...
T Consensus        75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~--------------~~~  137 (330)
T 1xku_A           75 LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT--------------KVR  137 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC--------------BBC
T ss_pred             CCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc--------------ccC
Confidence            578999999999 78877 6789999999999999999999988765  79999999999852              233


Q ss_pred             cccccCccCccceeEEEeecCccc----ccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHA----FCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYF  154 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~  154 (305)
                      +..+..+++|+.|+++.  +....    ...+...    ++|+.|+++.+.++.++ ...++|+.|++++|.++.++...
T Consensus       138 ~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l----~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~  211 (330)
T 1xku_A          138 KSVFNGLNQMIVVELGT--NPLKSSGIENGAFQGM----KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS  211 (330)
T ss_dssp             HHHHTTCTTCCEEECCS--SCCCGGGBCTTGGGGC----TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG
T ss_pred             HhHhcCCccccEEECCC--CcCCccCcChhhccCC----CCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHH
Confidence            45678899999999988  33321    1222222    34999999977777777 44589999999999988776544


Q ss_pred             cCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279          155 GDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH  232 (305)
Q Consensus       155 ~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (305)
                      .     ..+++|++|++++| .++.++  .+..+++|++|++++|. +..++.            .+..+++|++|++++
T Consensus       212 ~-----~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          212 L-----KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPG------------GLADHKYIQVVYLHN  272 (330)
T ss_dssp             G-----TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCT------------TTTTCSSCCEEECCS
T ss_pred             h-----cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCCh------------hhccCCCcCEEECCC
Confidence            2     67899999999999 666653  57788999999999976 445554            677899999999999


Q ss_pred             cccCceecCCCC-------CCCCCceEEeeCCCC
Q 044279          233 LPSLTSICCRAV-------PLPSLKTISVYDCPG  259 (305)
Q Consensus       233 ~~~l~~~~~~~~-------~~~~L~~L~l~~c~~  259 (305)
                      | .++.++....       ..+.|+.|++++++.
T Consensus       273 N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          273 N-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             S-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             C-cCCccChhhcCCcccccccccccceEeecCcc
Confidence            8 6776654332       247889999988864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=4.1e-20  Score=167.97  Aligned_cols=217  Identities=18%  Similarity=0.204  Sum_probs=154.4

Q ss_pred             CcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++|++++| .++.+ |..+.++++|++|++++|++..++ ..+..+++|++|++++|.+.              ...
T Consensus        75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~  139 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT--------------VIP  139 (452)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--------------BCC
T ss_pred             CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC--------------ccC
Confidence            46888889888 77766 456888888999999888888665 45888888999999888742              222


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc----ccCCCccEEEEeceecceecccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD----FRMDHLETLEIVDCSLESINIYF  154 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~  154 (305)
                      ...+..+++|+.|++++  +....+..  ......++|+.|+++ ++.++.++    ..+++|+.|++++|.+++++.  
T Consensus       140 ~~~~~~l~~L~~L~L~~--N~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--  213 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRN--NPIESIPS--YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--  213 (452)
T ss_dssp             TTTSSSCTTCCEEECCS--CCCCEECT--TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--
T ss_pred             hhhhcccCCCCEEECCC--CCcceeCH--hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--
Confidence            34477788888888887  33332221  011122348888888 67766665    567888888888888776652  


Q ss_pred             cCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279          155 GDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH  232 (305)
Q Consensus       155 ~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (305)
                           ...+++|+.|++++| .++.+ + .+..+++|++|++++|.. ..+.+           ..+..+++|+.|+|++
T Consensus       214 -----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~~~~~l~~L~~L~L~~  275 (452)
T 3zyi_A          214 -----LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER-----------NAFDGLASLVELNLAH  275 (452)
T ss_dssp             -----CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECCS
T ss_pred             -----ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcC-ceECH-----------HHhcCCCCCCEEECCC
Confidence                 256788888888888 55554 2 567788888888888653 33333           2567788899999988


Q ss_pred             cccCceecCCC-CCCCCCceEEeeCCC
Q 044279          233 LPSLTSICCRA-VPLPSLKTISVYDCP  258 (305)
Q Consensus       233 ~~~l~~~~~~~-~~~~~L~~L~l~~c~  258 (305)
                      | .++.++... ..+++|+.|++++++
T Consensus       276 N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          276 N-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             S-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             C-cCCccChHHhccccCCCEEEccCCC
Confidence            8 777766543 468888888888775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=8e-20  Score=167.07  Aligned_cols=240  Identities=18%  Similarity=0.189  Sum_probs=175.2

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++|++++| .++.++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.+               ..+
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---------------~~~   95 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL---------------KLI   95 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------------CSC
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC---------------Ccc
Confidence            47899999999 888775 5699999999999999999866 66799999999999999984               233


Q ss_pred             c-ccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecc
Q 044279           80 L-AGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINI  152 (305)
Q Consensus        80 ~-~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~  152 (305)
                      + ..+..+++|+.|++++  +.....  ..+..    ..+|++|+++.+.+..+.    ..+++|+.|++++|.++.++.
T Consensus        96 ~~~~~~~l~~L~~L~Ls~--n~i~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISE--NKIVILLDYMFQD----LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CTTSSTTCTTCCEEECTT--SCCCEECTTTTTT----CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcccccCCCCCCEEECCC--CccccCChhHccc----cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            3 4578899999999988  333222  22222    245999999977666554    678899999999999888776


Q ss_pred             cccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCC-----------CCcccc-cc
Q 044279          153 YFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESP-----------GTSEIE-ES  218 (305)
Q Consensus       153 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~-~~  218 (305)
                      ...     ..+++|+.|++++| .++.++  .+..+++|++|++++|..+..++......           .-..++ ..
T Consensus       170 ~~l-----~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  243 (477)
T 2id5_A          170 EAL-----SHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA  243 (477)
T ss_dssp             HHH-----TTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred             hHh-----cccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence            543     67899999999999 666553  57788999999999988766655422110           001111 23


Q ss_pred             ccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279          219 HHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCPGLRKLPLNSGSA  270 (305)
Q Consensus       219 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~  270 (305)
                      +..+++|+.|+++++ .++.++.. ...+++|+.|+++++..-...|..+...
T Consensus       244 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          244 VRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             HTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             hcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence            567888888888888 56666543 4578889999998774333334444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.83  E-value=4.5e-20  Score=167.65  Aligned_cols=130  Identities=20%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             cceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCC
Q 044279          116 CVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNL  189 (305)
Q Consensus       116 ~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L  189 (305)
                      +|+.|+++.+.+....    ..+++|+.|++++|.+++++....     ..+++|++|++++| .++.++  .+..+++|
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLTHLLKLNLSQN-FLGSIDSRMFENLDKL  349 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSS-CCCEECGGGGTTCTTC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh-----cCcccCCEEECCCC-ccCCcChhHhcCcccC
Confidence            3555555544444332    678899999999999888765442     67899999999999 666653  57789999


Q ss_pred             CEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCCCCCCC
Q 044279          190 QFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPGLRKLP  264 (305)
Q Consensus       190 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~  264 (305)
                      ++|++++|.. ..+.+           ..+..+++|++|++++| .++.++... ..+++|+.|++++++.-...|
T Consensus       350 ~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          350 EVLDLSYNHI-RALGD-----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSSCC-CEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCcc-cccCh-----------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999764 44433           36778999999999998 788777654 579999999999987655555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=1.4e-19  Score=165.04  Aligned_cols=225  Identities=20%  Similarity=0.262  Sum_probs=123.0

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|++++| .++.+|. ++++++|++|++++|.+..++. ++.+++|++|++++|.+..               .+
T Consensus        67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~---------------~~  128 (466)
T 1o6v_A           67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD---------------ID  128 (466)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---------------CG
T ss_pred             hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC---------------Ch
Confidence            467788888887 6777766 7778888888888887777665 7778888888888776432               12


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCC-----------------ccccceEEEEEcCCCcccc--ccCCCccEEE
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPK-----------------LQSCVKRLTVASPWFSSLD--FRMDHLETLE  141 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-----------------~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~  141 (305)
                       .+..+++|+.|+++++.  ...+..+....+                 ..++|+.|+++.+.+..++  ..+++|+.|+
T Consensus       129 -~~~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  205 (466)
T 1o6v_A          129 -PLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI  205 (466)
T ss_dssp             -GGTTCTTCSEEEEEEEE--ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             -HHcCCCCCCEEECCCCc--cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEE
Confidence             26666667777766632  222222111111                 1123555555544444433  4455566666


Q ss_pred             EeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-------CC--
Q 044279          142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-------GT--  212 (305)
Q Consensus       142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~--  212 (305)
                      +++|.+++.+. +      ..+++|+.|++++| .++.++.+..+++|+.|++++|... .+++.....       ..  
T Consensus       206 l~~n~l~~~~~-~------~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          206 ATNNQISDITP-L------GILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ  276 (466)
T ss_dssp             CCSSCCCCCGG-G------GGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC
T ss_pred             ecCCccccccc-c------cccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc
Confidence            65555443332 1      33455555555555 4444444445555555555554321 111100000       00  


Q ss_pred             -ccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279          213 -SEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       213 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  258 (305)
                       .+.+ .+..+++|+.|++++| .++.++. ...+++|+.|++++|.
T Consensus       277 l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          277 ISNIS-PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCCCG-GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC
T ss_pred             cCccc-cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc
Confidence             0001 1456677777777776 5555544 4567778888887773

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=1.9e-20  Score=162.05  Aligned_cols=228  Identities=17%  Similarity=0.160  Sum_probs=173.1

Q ss_pred             CCcccEEeCCC-CCCccccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeecccccccc
Q 044279            1 MHALAVLDLSY-NFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         1 l~~L~~L~l~~-~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +++|++|++++ |...+.+|..++++++|++|++++|++. .+|..++.+++|++|++++|.+              ...
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l--------------~~~  140 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL--------------SGT  140 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE--------------ESC
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc--------------CCc
Confidence            57899999995 6233478888999999999999999987 8888899999999999999985              335


Q ss_pred             ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecceecccc
Q 044279           79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLESINIYF  154 (305)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~~~~~~~  154 (305)
                      .+..+..+++|+.|+++++.........+....   ++|+.|+++.+.+. ..+   ..++ |+.|++++|.++......
T Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~  216 (313)
T 1ogq_A          141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC---TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred             CChHHhcCCCCCeEECcCCcccCcCCHHHhhhh---hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence            677889999999999988322212223333332   24999999966555 233   4444 999999999977655444


Q ss_pred             cCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          155 GDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       155 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      .     ..+++|+.|++++|.....++.+..+++|++|++++|.....++.            .+..+++|++|++++| 
T Consensus       217 ~-----~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N-  278 (313)
T 1ogq_A          217 F-----GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLNVSFN-  278 (313)
T ss_dssp             C-----CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG------------GGGGCTTCCEEECCSS-
T ss_pred             H-----hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh------------HHhcCcCCCEEECcCC-
Confidence            2     678999999999994433456677889999999999875444444            6788999999999999 


Q ss_pred             cCc-eecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          235 SLT-SICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       235 ~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      .++ .+|.. ..+++|+.+++++++.+...|.
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred             cccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence            554 56654 7889999999999887765543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=4.3e-20  Score=174.62  Aligned_cols=247  Identities=11%  Similarity=0.127  Sum_probs=152.5

Q ss_pred             CCcccEEeCCCCCCcc--ccchhhhcc------cccccccccCCccccCCc--ccccccccceeeccccceeeceEEEee
Q 044279            1 MHALAVLDLSYNFDLV--ELPEAIGKL------INLCHLNLSNTKIRELPA--GIKYLKNLKILRLDVFSWFSTELVALH   70 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~--~lp~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~l~~   70 (305)
                      +++|++|++++|..++  .+|..++++      ++|++|++++|++..+|.  .++.+++|++|++++|.+.        
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~--------  343 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE--------  343 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE--------
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc--------
Confidence            5789999999994266  589888887      999999999999999998  8999999999999999853        


Q ss_pred             ccccccccccccccCccCccceeEEEeecCcccccccccCCCcccc-ceEEEEEcCCCcccc-----ccCCCccEEEEec
Q 044279           71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSC-VKRLTVASPWFSSLD-----FRMDHLETLEIVD  144 (305)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~  144 (305)
                            ..++ .+..+++|+.|++++  +....   +.....-..+ |+.|+++.+.++.++     ..+++|+.|++++
T Consensus       344 ------g~ip-~~~~l~~L~~L~L~~--N~l~~---lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          344 ------GKLP-AFGSEIKLASLNLAY--NQITE---IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             ------EECC-CCEEEEEESEEECCS--SEEEE---CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred             ------cchh-hhCCCCCCCEEECCC--Ccccc---ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence                  2445 888999999999988  33332   2222222344 888888866666655     2234677888877


Q ss_pred             eecceecccccC-CC-cccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEEeccccccccccccCC-----------
Q 044279          145 CSLESINIYFGD-QG-RTYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYVSDCQVLSEIIGTYES-----------  209 (305)
Q Consensus       145 ~~l~~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------  209 (305)
                      |.++........ .. ..-.+++|++|++++| .++.++.  +..+++|++|++++|... .++.....           
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence            775443222110 00 0014456777777776 5555442  334666677776665432 43331110           


Q ss_pred             C--------CCcccccccc--ccCccceeeccCcccCceecCCCCCCCCCceEEeeC------CCCCCCCCCCCccc
Q 044279          210 P--------GTSEIEESHH--FLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYD------CPGLRKLPLNSGSA  270 (305)
Q Consensus       210 ~--------~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~~~~~~~~~  270 (305)
                      .        .-..++..+.  .+++|+.|++++| .++.++.....+++|+.|++++      +.....+|..+...
T Consensus       490 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l  565 (636)
T 4eco_A          490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC  565 (636)
T ss_dssp             CCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred             ccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence            0        0001222333  5666666666666 4444555555666666666633      33344555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=164.72  Aligned_cols=232  Identities=18%  Similarity=0.164  Sum_probs=147.7

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      ++|++|++++| .++.+|. .+.++++|++|++++|++..++ ..++.+++|++|++++|.+               ..+
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------~~~  115 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL---------------SNL  115 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------------SSC
T ss_pred             ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC---------------CcC
Confidence            46888888888 7777765 5888888888888888887664 4488888888888888874               233


Q ss_pred             ccc-ccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc----ccCCCccEEEEeceecceeccc
Q 044279           80 LAG-LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD----FRMDHLETLEIVDCSLESINIY  153 (305)
Q Consensus        80 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~  153 (305)
                      +.. +..+++|+.|++++  +....++... .....++|++|+++ ++.++.++    ..+++|+.|++++|.++.....
T Consensus       116 ~~~~~~~l~~L~~L~L~~--n~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLG--NPYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             CHHHHTTCTTCSEEECTT--CCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CHhHhCCCccCCEEECCC--CCCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            333 67778888888877  3332222200 11122348888888 43455543    5667788888888776666433


Q ss_pred             ccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCC-----------------CC--
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESP-----------------GT--  212 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------~~--  212 (305)
                      .     +..+++|++|++++| .++.++  .+..+++|++|++++|... ..+......                 .+  
T Consensus       193 ~-----l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          193 S-----LKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLD-TFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             T-----TTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCT-TCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             H-----HhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccc-cccccccccccccchhhccccccccccCcc
Confidence            3     256777888888877 455543  2334677888888776532 222100000                 00  


Q ss_pred             -ccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCCC
Q 044279          213 -SEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPGL  260 (305)
Q Consensus       213 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l  260 (305)
                       ..++..+..+++|+.|++++| .++.++... ..+++|+.|++++++..
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence             012224567788888888887 677777664 57888888888877543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=5.3e-20  Score=168.61  Aligned_cols=212  Identities=18%  Similarity=0.102  Sum_probs=167.2

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      ++|++|++++| .++.++ ..++.+++|++|++++|.+...++ ++.+++|++|++++|.+..                 
T Consensus        34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-----------------   94 (487)
T 3oja_A           34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-----------------   94 (487)
T ss_dssp             GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-----------------
T ss_pred             CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-----------------
Confidence            58999999999 777775 579999999999999999886654 8999999999999997532                 


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGD  156 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~  156 (305)
                        +...++|+.|++++  +....+..-     ..++|+.|+++.|.++...    ..+++|+.|++++|.++..+.... 
T Consensus        95 --l~~~~~L~~L~L~~--N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-  164 (487)
T 3oja_A           95 --LLVGPSIETLHAAN--NNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-  164 (487)
T ss_dssp             --EEECTTCCEEECCS--SCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-
T ss_pred             --CCCCCCcCEEECcC--CcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-
Confidence              22337899999988  333322211     1245999999977776654    668999999999999777554332 


Q ss_pred             CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          157 QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       157 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                         ...+++|+.|+|++| .++.++....+++|+.|++++|. +..+++            .+..+++|+.|++++| .+
T Consensus       165 ---~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~l~~L~~L~Ls~N-~l  226 (487)
T 3oja_A          165 ---AASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGP------------EFQSAAGVTWISLRNN-KL  226 (487)
T ss_dssp             ---GGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECG------------GGGGGTTCSEEECTTS-CC
T ss_pred             ---hhhCCcccEEecCCC-ccccccccccCCCCCEEECCCCC-CCCCCH------------hHcCCCCccEEEecCC-cC
Confidence               146899999999999 77777767779999999999976 555555            5778999999999998 78


Q ss_pred             ceecCCCCCCCCCceEEeeCCCCC
Q 044279          237 TSICCRAVPLPSLKTISVYDCPGL  260 (305)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~c~~l  260 (305)
                      +.++.....+++|+.|++++|+..
T Consensus       227 ~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          227 VLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cccchhhccCCCCCEEEcCCCCCc
Confidence            888888788999999999988654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=1.8e-19  Score=157.14  Aligned_cols=224  Identities=18%  Similarity=0.157  Sum_probs=120.5

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      +++.++++++ .++.+|..+.  ++|++|++++|.+..++. .++.+++|++|++++|.+.              ...+.
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~~   96 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--------------KIHEK   96 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECGG
T ss_pred             cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC--------------ccCHh
Confidence            4566666666 5555555432  456666666666554433 4566666666666666531              22244


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCC
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQ  157 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~  157 (305)
                      .+..+++|+.|++++  +....++.-     ...+|++|+++.+.+..++    ..+++|+.|++++|.++..+......
T Consensus        97 ~~~~l~~L~~L~L~~--n~l~~l~~~-----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  169 (332)
T 2ft3_A           97 AFSPLRKLQKLYISK--NHLVEIPPN-----LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF  169 (332)
T ss_dssp             GSTTCTTCCEEECCS--SCCCSCCSS-----CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred             HhhCcCCCCEEECCC--CcCCccCcc-----ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence            555566666666655  222221110     0133555555544444333    34555555555555543211110000


Q ss_pred             Cc-----------------ccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcccccc
Q 044279          158 GR-----------------TYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEES  218 (305)
Q Consensus       158 ~~-----------------~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  218 (305)
                      +.                 ....++|++|++++| .++.++  .+..+++|++|++++|.. ..+++           ..
T Consensus       170 ~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~-----------~~  236 (332)
T 2ft3_A          170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQI-RMIEN-----------GS  236 (332)
T ss_dssp             CSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCT-----------TG
T ss_pred             cCCccCEEECcCCCCCccCccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-CcCCh-----------hH
Confidence            00                 011245666666666 444442  455667777777777543 32222           24


Q ss_pred             ccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          219 HHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      +..+++|+.|++++| .++.++.....+++|+.|+++++ .++.++.
T Consensus       237 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~  281 (332)
T 2ft3_A          237 LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGV  281 (332)
T ss_dssp             GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred             hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccCh
Confidence            667888888888887 67777776777888888888776 4555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=6.9e-20  Score=159.78  Aligned_cols=231  Identities=18%  Similarity=0.178  Sum_probs=156.2

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccC-Ccccccccccceeeccccceeec--------eEE-Eee
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFST--------ELV-ALH   70 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~--------~~~-l~~   70 (305)
                      ++|++|++++| .++.++ ..++++++|++|++++|++..+ |..++.+++|++|++++|.+..+        ..+ +.+
T Consensus        54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~  132 (332)
T 2ft3_A           54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD  132 (332)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCS
T ss_pred             CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCC
Confidence            46788888888 677664 4578888888888888877755 55677888888888888765332        000 111


Q ss_pred             cccccccccc-ccccCccCccceeEEEeecCccccccccc-CCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceec
Q 044279           71 HNFCCATTVL-AGLESLENIHDISITLCFVDTHAFCRFQS-SPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSL  147 (305)
Q Consensus        71 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l  147 (305)
                      +.+   ..++ ..+..+++|+.|++.+  +.......... ....  +|+.|+++.+.++.++ .-.++|+.|++++|.+
T Consensus       133 n~i---~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          133 NRI---RKVPKGVFSGLRNMNCIEMGG--NPLENSGFEPGAFDGL--KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI  205 (332)
T ss_dssp             SCC---CCCCSGGGSSCSSCCEEECCS--CCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred             Ccc---CccCHhHhCCCccCCEEECCC--CccccCCCCcccccCC--ccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence            111   1222 3356677777777766  32221101011 1111  4777777766666666 3346889999998887


Q ss_pred             ceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279          148 ESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL  225 (305)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  225 (305)
                      +.++...     +..+++|++|++++| .++.++  .+..+++|++|++++|. +..++.            .+..+++|
T Consensus       206 ~~~~~~~-----l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L  266 (332)
T 2ft3_A          206 QAIELED-----LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPA------------GLPDLKLL  266 (332)
T ss_dssp             CCCCTTS-----STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT------------TGGGCTTC
T ss_pred             CccCHHH-----hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecCh------------hhhcCccC
Confidence            7776444     267899999999999 666664  47789999999999975 445554            67889999


Q ss_pred             ceeeccCcccCceecCCCC-------CCCCCceEEeeCCCCC
Q 044279          226 MVIDLQHLPSLTSICCRAV-------PLPSLKTISVYDCPGL  260 (305)
Q Consensus       226 ~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~c~~l  260 (305)
                      +.|+++++ .++.++....       ..++|+.|++++++..
T Consensus       267 ~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          267 QVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence            99999998 6777654322       2577999999988743

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=1.4e-19  Score=161.37  Aligned_cols=226  Identities=15%  Similarity=0.171  Sum_probs=159.3

Q ss_pred             CCcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccc
Q 044279            1 MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +++|++|++++| .++.++ ..++++++|++|++++|++..+|.. ++.+++|++|++++|.+.              ..
T Consensus        92 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--------------~~  156 (390)
T 3o6n_A           92 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--------------RI  156 (390)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------BC
T ss_pred             CCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC--------------cc
Confidence            578999999999 788775 4589999999999999999999887 589999999999999852              23


Q ss_pred             ccccccCccCccceeEEEeecCcccccccccCC------------CccccceEEEEEcCCCcccc-ccCCCccEEEEece
Q 044279           79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSP------------KLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDC  145 (305)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~------------~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~  145 (305)
                      .+..+..+++|+.|+++++.........+..+.            .....|+.|+++.+.+..++ ...++|+.|++++|
T Consensus       157 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  236 (390)
T 3o6n_A          157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN  236 (390)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS
T ss_pred             ChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC
Confidence            345578888888888887332222111111110            01123666666655555555 44567888888888


Q ss_pred             ecceecccccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279          146 SLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS  223 (305)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (305)
                      .+++.+  .     ...+++|++|++++| .++..  ..+..+++|++|++++|. +..++.            ....++
T Consensus       237 ~l~~~~--~-----l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~  295 (390)
T 3o6n_A          237 NLTDTA--W-----LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIP  295 (390)
T ss_dssp             CCCCCG--G-----GGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCT
T ss_pred             CCcccH--H-----HcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCC
Confidence            766543  1     267888889999888 55554  356778888888888865 444443            445678


Q ss_pred             ccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCC
Q 044279          224 NLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLP  264 (305)
Q Consensus       224 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~  264 (305)
                      +|+.|++++| .++.++.....+++|+.|++++|+ +..++
T Consensus       296 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~  334 (390)
T 3o6n_A          296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK  334 (390)
T ss_dssp             TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred             CCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC
Confidence            8888888888 677776656677888888887774 55554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=1.6e-19  Score=169.74  Aligned_cols=236  Identities=18%  Similarity=0.170  Sum_probs=118.6

Q ss_pred             cccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcccccccccceeeccccceeec--eEE----------Ee
Q 044279            3 ALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST--ELV----------AL   69 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~----------l~   69 (305)
                      +|++|++++| .+..++.. ++++++|++|++++|++..+|..++.+++|++|++++|.+...  ..+          +.
T Consensus       255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            4566666666 55555433 6666666666666666666666666666666666666654221  000          00


Q ss_pred             eccccccccc-cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEec
Q 044279           70 HHNFCCATTV-LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVD  144 (305)
Q Consensus        70 ~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~  144 (305)
                      ++.+  ...+ ...+..+++|+.|++++  +...............++|++|+++.+.+....    ..+++|+.|++++
T Consensus       334 ~n~~--~~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          334 GNTK--RLELGTGCLENLENLRELDLSH--DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             SCSS--CCBCCSSTTTTCTTCCEEECCS--SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             CCCc--ccccchhhhhccCcCCEEECCC--CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            0000  1111 12245555555555555  222221100111111233666666644444332    4456666666666


Q ss_pred             eecceecccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCcccccccccc
Q 044279          145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL  222 (305)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (305)
                      |.++.......    +..+++|+.|++++| .++.. + .+..+++|++|++++|.......+         ....+..+
T Consensus       410 n~l~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~~~l  475 (606)
T 3t6q_A          410 TRLKVKDAQSP----FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSLQTL  475 (606)
T ss_dssp             CCEECCTTCCT----TTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGGGGC
T ss_pred             CcCCCcccchh----hhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhhccC
Confidence            66443322110    245666777777766 44332 2 355667777777777654321111         01235566


Q ss_pred             CccceeeccCcccCcee-cCCCCCCCCCceEEeeCCC
Q 044279          223 SNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       223 ~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~  258 (305)
                      ++|+.|++++| .++.+ +.....+++|+.|++++|.
T Consensus       476 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          476 GRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCccEEECCCC-ccCccChhhhccccCCCEEECCCCc
Confidence            66666666666 44444 3334456666666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=4.2e-19  Score=161.30  Aligned_cols=223  Identities=21%  Similarity=0.175  Sum_probs=173.7

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      .+.++.++. .++.+|..+.  .++++|++++|++..+ |..++++++|++|++++|.+.              ...+..
T Consensus        56 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~  118 (452)
T 3zyi_A           56 FSKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------QIEVGA  118 (452)
T ss_dssp             SCEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTT
T ss_pred             CcEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------CcChhh
Confidence            356777777 7788887554  6899999999999866 456999999999999999853              334467


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEecee-cceecccccCC
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFGDQ  157 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~~~  157 (305)
                      +..+++|+.|++++  +....+..  ......++|++|+++.|.++.++    ..+++|+.|++++|+ ++.++...+  
T Consensus       119 ~~~l~~L~~L~L~~--n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--  192 (452)
T 3zyi_A          119 FNGLASLNTLELFD--NWLTVIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--  192 (452)
T ss_dssp             TTTCTTCCEEECCS--SCCSBCCT--TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--
T ss_pred             ccCcccCCEEECCC--CcCCccCh--hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--
Confidence            88999999999998  43332221  01112345999999977777766    678999999999977 888876543  


Q ss_pred             CcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279          158 GRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                         ..+++|++|++++| .++.++.+..+++|++|++++|.. ..+.+           ..+..+++|+.|+++++ .++
T Consensus       193 ---~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~n-~l~  255 (452)
T 3zyi_A          193 ---EGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHF-PEIRP-----------GSFHGLSSLKKLWVMNS-QVS  255 (452)
T ss_dssp             ---TTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCC-SEECG-----------GGGTTCTTCCEEECTTS-CCC
T ss_pred             ---cCCCCCCEEECCCC-cccccccccccccccEEECcCCcC-cccCc-----------ccccCccCCCEEEeCCC-cCc
Confidence               78999999999999 888888888999999999999764 44433           36788999999999999 677


Q ss_pred             eec-CCCCCCCCCceEEeeCCCCCCCCCCCC
Q 044279          238 SIC-CRAVPLPSLKTISVYDCPGLRKLPLNS  267 (305)
Q Consensus       238 ~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~  267 (305)
                      .++ .....+++|+.|++++| .++.+|...
T Consensus       256 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  285 (452)
T 3zyi_A          256 LIERNAFDGLASLVELNLAHN-NLSSLPHDL  285 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCSS-CCSCCCTTS
T ss_pred             eECHHHhcCCCCCCEEECCCC-cCCccChHH
Confidence            664 34567999999999887 677776553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=4.4e-19  Score=161.24  Aligned_cols=207  Identities=17%  Similarity=0.176  Sum_probs=150.2

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|++++| .++.+| .++.+++|++|++++|++..+|  ++.+++|++|++++|.+.               .. 
T Consensus        41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~---------------~~-  100 (457)
T 3bz5_A           41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT---------------NL-  100 (457)
T ss_dssp             HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS---------------CC-
T ss_pred             cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc---------------ee-
Confidence            468999999999 888887 6899999999999999999885  889999999999999853               22 


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEecee-cceecccccCCC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCS-LESINIYFGDQG  158 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~-l~~~~~~~~~~~  158 (305)
                       .+..+++|+.|++++  +....++ +.    ..++|+.|+++.+.++.++ ..+++|+.|++++|. +..++       
T Consensus       101 -~~~~l~~L~~L~L~~--N~l~~l~-~~----~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~-------  165 (457)
T 3bz5_A          101 -DVTPLTKLTYLNCDT--NKLTKLD-VS----QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD-------  165 (457)
T ss_dssp             -CCTTCTTCCEEECCS--SCCSCCC-CT----TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC-------
T ss_pred             -ecCCCCcCCEEECCC--CcCCeec-CC----CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccc-------
Confidence             277888899998888  4333332 22    2234888888866676666 677888888888885 55553       


Q ss_pred             cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS  238 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  238 (305)
                       +..+++|+.|++++| .++.++ +..+++|+.|++++|... .+              .++.+++|+.|++++| .++.
T Consensus       166 -~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~l~-~~--------------~l~~l~~L~~L~Ls~N-~l~~  226 (457)
T 3bz5_A          166 -VTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNNIT-KL--------------DLNQNIQLTFLDCSSN-KLTE  226 (457)
T ss_dssp             -CTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSCCS-CC--------------CCTTCTTCSEEECCSS-CCSC
T ss_pred             -cccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCcCC-ee--------------ccccCCCCCEEECcCC-cccc
Confidence             256788888888887 666666 667788888888876532 21              2456677777777777 5666


Q ss_pred             ecCCCCCCCCCceEEeeCCCCCCCCC
Q 044279          239 ICCRAVPLPSLKTISVYDCPGLRKLP  264 (305)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~c~~l~~~~  264 (305)
                      ++  ...+++|+.|+++++ .++.+|
T Consensus       227 ip--~~~l~~L~~L~l~~N-~l~~~~  249 (457)
T 3bz5_A          227 ID--VTPLTQLTYFDCSVN-PLTELD  249 (457)
T ss_dssp             CC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred             cC--ccccCCCCEEEeeCC-cCCCcC
Confidence            55  456677777777665 444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=5.6e-19  Score=159.95  Aligned_cols=221  Identities=23%  Similarity=0.209  Sum_probs=174.0

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      .+.++.++. .++.+|..+.  .+++.|++++|++..++ ..+.++++|++|++++|.+.              ...+..
T Consensus        45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~i~~~~  107 (440)
T 3zyj_A           45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--------------TIEIGA  107 (440)
T ss_dssp             SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--------------EECGGG
T ss_pred             CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--------------ccChhh
Confidence            456777777 7888887654  68999999999998776 45899999999999999853              234467


Q ss_pred             ccCccCccceeEEEeecCccccc--ccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEecee-cceeccccc
Q 044279           83 LESLENIHDISITLCFVDTHAFC--RFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFG  155 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~  155 (305)
                      +..+++|+.|++++  +....+.  .+...    ++|+.|+++.|.++.++    ..+++|+.|++++|+ +..++... 
T Consensus       108 ~~~l~~L~~L~L~~--n~l~~~~~~~~~~l----~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-  180 (440)
T 3zyj_A          108 FNGLANLNTLELFD--NRLTTIPNGAFVYL----SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-  180 (440)
T ss_dssp             GTTCSSCCEEECCS--SCCSSCCTTTSCSC----SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-
T ss_pred             ccCCccCCEEECCC--CcCCeeCHhHhhcc----ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch-
Confidence            88999999999988  4333222  12222    45999999977777766    678999999999977 77777654 


Q ss_pred             CCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCccc
Q 044279          156 DQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS  235 (305)
Q Consensus       156 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  235 (305)
                          +..+++|++|++++| .++.++.+..+++|++|++++|. +..+.+           ..+..+++|+.|+++++ .
T Consensus       181 ----~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~  242 (440)
T 3zyj_A          181 ----FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRP-----------GSFQGLMHLQKLWMIQS-Q  242 (440)
T ss_dssp             ----TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECTTC-C
T ss_pred             ----hhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccCh-----------hhhccCccCCEEECCCC-c
Confidence                378999999999999 88888888899999999999975 444443           36788999999999999 7


Q ss_pred             CceecC-CCCCCCCCceEEeeCCCCCCCCCCCC
Q 044279          236 LTSICC-RAVPLPSLKTISVYDCPGLRKLPLNS  267 (305)
Q Consensus       236 l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~  267 (305)
                      ++.++. ....+++|+.|++++| .++.+|...
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  274 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL  274 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred             eeEEChhhhcCCCCCCEEECCCC-CCCccChhH
Confidence            777654 3457899999999887 677776543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.3e-19  Score=175.00  Aligned_cols=91  Identities=16%  Similarity=0.077  Sum_probs=45.1

Q ss_pred             CccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCC
Q 044279          164 RNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR  242 (305)
Q Consensus       164 ~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  242 (305)
                      ++|+.|++++|.....+| .++.++.|+.|++++|.....+|.            .++.+++|+.|++++|.--..+|..
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCCCCCCEEECCCCcccCcCChH
Confidence            445555555552211222 344455555555555443333333            5556666666666666322345554


Q ss_pred             CCCCCCCceEEeeCCCCCCCCCCC
Q 044279          243 AVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       243 ~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      ...+++|++|++++|+.-..+|..
T Consensus       700 l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          700 MSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGGCCCCSEEECCSSEEEEECCSS
T ss_pred             HhCCCCCCEEECcCCcccccCCCc
Confidence            555666666666665444455544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=1.6e-19  Score=154.11  Aligned_cols=215  Identities=18%  Similarity=0.197  Sum_probs=160.1

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      +.++.+++ .++.+|..+  .++|++|++++|++..++. .+..+++|++|++++|.+.              ...+..+
T Consensus        14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------~~~~~~~   76 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------RIDAAAF   76 (285)
T ss_dssp             CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTT
T ss_pred             eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--------------eeCHhhc
Confidence            56788887 788888643  4689999999998887764 4888999999999988752              2335678


Q ss_pred             cCccCccceeEEEeecC-cccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccC
Q 044279           84 ESLENIHDISITLCFVD-THAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGD  156 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~-~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~  156 (305)
                      ..+++|+.|++++  +. ...+  ..+...    ++|++|+++.+.+..++    ..+++|+.|++++|.++.++.... 
T Consensus        77 ~~l~~L~~L~l~~--n~~l~~~~~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  149 (285)
T 1ozn_A           77 TGLALLEQLDLSD--NAQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-  149 (285)
T ss_dssp             TTCTTCCEEECCS--CTTCCCCCTTTTTTC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred             CCccCCCEEeCCC--CCCccccCHHHhcCC----cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh-
Confidence            8889999999888  32 2221  222222    34888988866666553    668899999999999887776542 


Q ss_pred             CCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          157 QGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       157 ~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                          ..+++|++|++++| .++.++  .+..+++|++|++++|.. ..+.+           ..+..+++|+.|+++++ 
T Consensus       150 ----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~l~~n-  211 (285)
T 1ozn_A          150 ----RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV-AHVHP-----------HAFRDLGRLMTLYLFAN-  211 (285)
T ss_dssp             ----TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECT-----------TTTTTCTTCCEEECCSS-
T ss_pred             ----ccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcc-cccCH-----------hHccCcccccEeeCCCC-
Confidence                67899999999998 677665  377889999999999764 33322           26778899999999998 


Q ss_pred             cCceecCC-CCCCCCCceEEeeCCCCCC
Q 044279          235 SLTSICCR-AVPLPSLKTISVYDCPGLR  261 (305)
Q Consensus       235 ~l~~~~~~-~~~~~~L~~L~l~~c~~l~  261 (305)
                      .++.++.. ...+++|+.|++++++...
T Consensus       212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          212 NLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCCcCCHHHcccCcccCEEeccCCCccC
Confidence            67666533 4578999999998886543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.4e-19  Score=174.65  Aligned_cols=233  Identities=15%  Similarity=0.181  Sum_probs=177.2

Q ss_pred             CcccEEeCCCCCCcc-ccchhhhcccccccccccCCccc-cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      ++|++|++++| .+. .+|..++++++|++|++++|++. .+|..++.+++|++|++++|.+              ....
T Consensus       394 ~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l--------------~~~~  458 (768)
T 3rgz_A          394 NTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML--------------EGEI  458 (768)
T ss_dssp             CCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC--------------CSCC
T ss_pred             CCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc--------------cCcC
Confidence            57999999999 555 77888999999999999999887 7788899999999999999985              3466


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCCccEEEEeceecc-eecccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDHLETLEIVDCSLE-SINIYF  154 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~L~~L~l~~~~l~-~~~~~~  154 (305)
                      +..+..+++|+.|+++.|.........+...    ++|+.|+++.|.+. .++   ..+++|+.|++++|.++ .++..+
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNC----TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGC----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcC----CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence            7778888899999988843322223333333    34888888855554 344   67888999999988865 444333


Q ss_pred             cCCCcccCCCccceEeeeCCCCCccCC-----------------------------------------------------
Q 044279          155 GDQGRTYCFRNLRHLSVKDCHFMTDLK-----------------------------------------------------  181 (305)
Q Consensus       155 ~~~~~~~~~~~L~~L~L~~~~~l~~~~-----------------------------------------------------  181 (305)
                            ..+++|+.|++++|.....+|                                                     
T Consensus       535 ------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          535 ------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             ------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence                  678889999988884321221                                                     


Q ss_pred             ------------------cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC
Q 044279          182 ------------------WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA  243 (305)
Q Consensus       182 ------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  243 (305)
                                        .+..+++|+.|++++|.....+|.            .++.+++|+.|++++|.--..+|...
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~------------~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK------------EIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG------------GGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCH------------HHhccccCCEEeCcCCccCCCCChHH
Confidence                              233467899999999876555555            78999999999999994445788888


Q ss_pred             CCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279          244 VPLPSLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       244 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      +.+++|+.|++++|..-..+|..+..++
T Consensus       677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             GGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCC
Confidence            8999999999999976668888877664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=2.4e-19  Score=162.93  Aligned_cols=163  Identities=15%  Similarity=0.139  Sum_probs=100.2

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|++++| .++.+|  ++.+++|++|++++|++..+|  ++.+++|++|++++|.+..               + 
T Consensus        63 l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~---------------l-  121 (457)
T 3bz5_A           63 LTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK---------------L-  121 (457)
T ss_dssp             CTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC---------------C-
T ss_pred             cCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe---------------e-
Confidence            467888888888 777775  677888888888888877764  7778888888888876532               1 


Q ss_pred             ccccCccCccceeEEEeecCcccccccccC------------------CCccccceEEEEEcCCCcccc-ccCCCccEEE
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSS------------------PKLQSCVKRLTVASPWFSSLD-FRMDHLETLE  141 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~------------------~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~  141 (305)
                       .+..+++|+.|+++.+  ....++ +...                  ....++|+.|+++.+.++.++ ..+++|+.|+
T Consensus       122 -~~~~l~~L~~L~l~~N--~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~  197 (457)
T 3bz5_A          122 -DVSQNPLLTYLNCARN--TLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN  197 (457)
T ss_dssp             -CCTTCTTCCEEECTTS--CCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEE
T ss_pred             -cCCCCCcCCEEECCCC--ccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEE
Confidence             1444445555544442  111110 0000                  111133666666655555555 5556666666


Q ss_pred             EeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccc
Q 044279          142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~  198 (305)
                      +++|.++.++        +..+++|+.|++++| .++.++ +..+++|+.|++++|.
T Consensus       198 l~~N~l~~~~--------l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          198 CDTNNITKLD--------LNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CCSSCCSCCC--------CTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred             CcCCcCCeec--------cccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence            6666655543        255677777777777 666665 6667777777777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=2.8e-19  Score=154.13  Aligned_cols=227  Identities=17%  Similarity=0.175  Sum_probs=170.7

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      +.++.+++ .++.+|..+.  ++|++|++++|++..+|.. ++.+++|++|++++|.+..            ....+..+
T Consensus        10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF------------KGCCSQSD   74 (306)
T ss_dssp             TEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE------------EEEEEHHH
T ss_pred             CEEEcCCC-CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc------------ccCccccc
Confidence            46788888 8888987543  6899999999999999876 6899999999999998642            22334566


Q ss_pred             cCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEeceecceecccccCC
Q 044279           84 ESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGDQ  157 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~  157 (305)
                      ..+++|+.|++++  +....+.. +...    ++|++|+++.+.+..++     ..+++|+.|++++|.++......   
T Consensus        75 ~~~~~L~~L~Ls~--n~i~~l~~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---  145 (306)
T 2z66_A           75 FGTTSLKYLDLSF--NGVITMSSNFLGL----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---  145 (306)
T ss_dssp             HSCSCCCEEECCS--CSEEEEEEEEETC----TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT---
T ss_pred             ccccccCEEECCC--CccccChhhcCCC----CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh---
Confidence            6789999999988  44333332 3333    34999999865554432     67889999999999877666544   


Q ss_pred             CcccCCCccceEeeeCCCCCcc--C-CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          158 GRTYCFRNLRHLSVKDCHFMTD--L-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~l~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                        +..+++|++|++++| .++.  . ..+..+++|++|++++|. +..+++           ..+..+++|+.|++++| 
T Consensus       146 --~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-  209 (306)
T 2z66_A          146 --FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----------TAFNSLSSLQVLNMSHN-  209 (306)
T ss_dssp             --TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECTTS-
T ss_pred             --cccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCH-----------HHhcCCCCCCEEECCCC-
Confidence              267899999999999 5543  3 367789999999999976 444433           36778999999999999 


Q ss_pred             cCceecC-CCCCCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279          235 SLTSICC-RAVPLPSLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       235 ~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      .++.++. ....+++|+.|++++|......|..+...+
T Consensus       210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            6766654 345789999999998865555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=8.6e-19  Score=159.86  Aligned_cols=242  Identities=19%  Similarity=0.229  Sum_probs=139.9

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEE-----Eeeccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELV-----ALHHNFCC   75 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~~~~~~   75 (305)
                      +++|++|++++| .+..++. ++++++|++|++++|++..++. ++.+++|++|++++|.+.....+     +....+..
T Consensus        89 l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A           89 LTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN  165 (466)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             cccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence            578999999999 8887776 8999999999999999888865 88999999999999876432100     00000000


Q ss_pred             cccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceeccc
Q 044279           76 ATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIY  153 (305)
Q Consensus        76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~  153 (305)
                      .......+..+++|+.|++++  +....+..+...    ++|++|+++.+.+....  ..+++|+.|++++|.+++++. 
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~l~~l----~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-  238 (466)
T 1o6v_A          166 QVTDLKPLANLTTLERLDISS--NKVSDISVLAKL----TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-  238 (466)
T ss_dssp             SCCCCGGGTTCTTCCEEECCS--SCCCCCGGGGGC----TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             cccCchhhccCCCCCEEECcC--CcCCCChhhccC----CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-
Confidence            001112355666677777666  333333222222    23666666644444333  445556666666555444321 


Q ss_pred             ccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-------CCc--cccccccccCc
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-------GTS--EIEESHHFLSN  224 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~  224 (305)
                            ...+++|++|++++| .++.++.+..+++|++|++++|.. ..+++....+       ...  .....+..+++
T Consensus       239 ------l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  310 (466)
T 1o6v_A          239 ------LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKN  310 (466)
T ss_dssp             ------GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred             ------hhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCcccCchhhcCCCC
Confidence                  134455555555554 333333344444455555544332 1111110000       000  00012578999


Q ss_pred             cceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCC
Q 044279          225 LMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKL  263 (305)
Q Consensus       225 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~  263 (305)
                      |+.|++++| .++.++. ...+++|+.|++++| .+..+
T Consensus       311 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~  346 (466)
T 1o6v_A          311 LTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDV  346 (466)
T ss_dssp             CSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred             CCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCc
Confidence            999999999 6666654 568999999999988 55554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=2.3e-19  Score=168.77  Aligned_cols=248  Identities=15%  Similarity=0.122  Sum_probs=139.2

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeec---------eEE-Eeec
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST---------ELV-ALHH   71 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~---------~~~-l~~~   71 (305)
                      ++|+.|+++++ .+..+| .+..+++|++|++++|.+..+| .+ .+++|++|++++|.....         +.+ +.++
T Consensus       285 ~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          285 ANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN  360 (606)
T ss_dssp             TTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred             CCCCEEEecCc-cchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence            56777777777 666666 5677777777777777777776 44 666677776666632110         000 1111


Q ss_pred             cccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEecee
Q 044279           72 NFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCS  146 (305)
Q Consensus        72 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~  146 (305)
                      .+......+..+..+++|+.|+++.  +....+.   ......++|+.|+++.+.+....     ..+++|+.|++++|.
T Consensus       361 ~l~~~~~~~~~~~~~~~L~~L~L~~--n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  435 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGTNSLRHLDLSF--NGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN  435 (606)
T ss_dssp             CEEEEEECCHHHHCCSCCCEEECCS--CSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred             ccCCCcchhhhhccCCcccEeECCC--Cccccch---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence            1111111234445555566555555  2222211   11111233666666643333221     455666666666666


Q ss_pred             cceecccccCCCcccCCCccceEeeeCCCCCcc--CC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279          147 LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD--LK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS  223 (305)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (305)
                      +.......     +..+++|++|++++| .+++  ++ .+..+++|++|++++|... .+++           ..+..++
T Consensus       436 l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-----------~~~~~l~  497 (606)
T 3vq2_A          436 TKIDFDGI-----FLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLE-QISW-----------GVFDTLH  497 (606)
T ss_dssp             CEECCTTT-----TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCC-EECT-----------TTTTTCT
T ss_pred             CCccchhh-----hcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCC-ccCh-----------hhhcccc
Confidence            54433322     245667777777776 3333  22 4556677777777776432 2222           2567788


Q ss_pred             ccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCCCccccCcCceEe
Q 044279          224 NLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAIR  278 (305)
Q Consensus       224 ~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i~  278 (305)
                      +|++|++++| .++.+ +.....+++|+.|++++| .++.+|..+..+++++..++
T Consensus       498 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          498 RLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             TCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred             cCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence            8888888888 55544 555667888888888777 46777777666554344433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=4.4e-18  Score=157.17  Aligned_cols=131  Identities=18%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC----cCCCCCCCCEEEEecccccccccccc
Q 044279          132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----WIRCAPNLQFLYVSDCQVLSEIIGTY  207 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~  207 (305)
                      ..+++|+.|++++|.+++.....     +..+++|++|++++| .++.++    .+..+++|++|++++|.....++...
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFEN-----CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-----CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             hhCCcccEEEeECCccChhhhhh-----hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence            45667777777777755532222     256677777777777 555422    35567777777777765433244311


Q ss_pred             CC--C-------CCcccc-cccccc-CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC-Cccc
Q 044279          208 ES--P-------GTSEIE-ESHHFL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN-SGSA  270 (305)
Q Consensus       208 ~~--~-------~~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~  270 (305)
                      ..  .       ....+. .....+ ++|+.|++++| .++.++.....+++|+.|++++| .++.+|.. +...
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l  467 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL  467 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC
Confidence            10  0       000000 011122 68888888888 77788876778999999999887 67788876 4443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=2.1e-18  Score=162.24  Aligned_cols=58  Identities=24%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             cccEEeCCCCCCcccc-chhhhcccccccccccCCccccC-Ccccccccccceeeccccce
Q 044279            3 ALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~   61 (305)
                      ++++|++++| .++.+ |..++++++|++|++++|++..+ |..++++++|++|++++|.+
T Consensus        34 ~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            4556666666 55554 33456666666666666655533 34455566666666665553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=6.7e-19  Score=150.19  Aligned_cols=197  Identities=18%  Similarity=0.160  Sum_probs=154.3

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccC-CcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      ++|++|++++| .++.++. .+.++++|++|++++|.+..+ |..++.+++|++|++++|...             ....
T Consensus        32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l-------------~~~~   97 (285)
T 1ozn_A           32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL-------------RSVD   97 (285)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-------------CCCC
T ss_pred             CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc-------------cccC
Confidence            57999999999 8888874 589999999999999999866 667999999999999999621             2334


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceeccccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFG  155 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~  155 (305)
                      +..+..+++|+.|++.++.........+..    .++|++|+++.+.++.++    ..+++|+.|++++|.++.++....
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRG----LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTT----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhC----CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence            667889999999999883222111111222    245999999977776665    568899999999999888886543


Q ss_pred             CCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          156 DQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       156 ~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                           ..+++|++|++++| .++.+  ..+..+++|++|++++|.. ..+++           ..+..+++|+.|+++++
T Consensus       174 -----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          174 -----RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNL-SALPT-----------EALAPLRALQYLRLNDN  235 (285)
T ss_dssp             -----TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-SCCCH-----------HHHTTCTTCCEEECCSS
T ss_pred             -----cCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcC-CcCCH-----------HHcccCcccCEEeccCC
Confidence                 67899999999999 56654  3677899999999999764 44443           25678999999999998


Q ss_pred             c
Q 044279          234 P  234 (305)
Q Consensus       234 ~  234 (305)
                      +
T Consensus       236 ~  236 (285)
T 1ozn_A          236 P  236 (285)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=5.3e-18  Score=158.15  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=79.7

Q ss_pred             cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC----cCCCCCCCCEEEEeccccccccccccC
Q 044279          133 RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----WIRCAPNLQFLYVSDCQVLSEIIGTYE  208 (305)
Q Consensus       133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~  208 (305)
                      .+++|+.|++++|.+++.....     ...+++|+.|++++| .++.++    .+..+++|++|++++|.....++....
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQG-----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTT-----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             CCCCceEEECCCCccccchhhh-----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence            4556677777766655432222     256777777777777 555543    356677777777777654332333111


Q ss_pred             CC---------CCcccc-cccccc-CccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC-Cccc
Q 044279          209 SP---------GTSEIE-ESHHFL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN-SGSA  270 (305)
Q Consensus       209 ~~---------~~~~~~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~  270 (305)
                      ..         ....+. ..+..+ ++|+.|++++| .++.++.....+++|+.|++++| .++.+|.. +...
T Consensus       425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l  496 (562)
T 3a79_B          425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL  496 (562)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred             cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence            00         000010 112233 68999999998 78888887778999999999876 67788877 4444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=6.3e-19  Score=165.75  Aligned_cols=203  Identities=17%  Similarity=0.107  Sum_probs=143.3

Q ss_pred             hcccccccccccCCccccC---CcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeec
Q 044279           23 GKLINLCHLNLSNTKIREL---PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFV   99 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   99 (305)
                      ..+++|++|++++|.+..+   |..++.+++|++|++++|.+               ...+..+..+++|+.|+++++..
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---------------~~~~~~~~~l~~L~~L~l~~n~l  411 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---------------IIMSANFMGLEELQHLDFQHSTL  411 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE---------------EEECCCCTTCTTCCEEECTTSEE
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc---------------ccchhhccCCCCCCeeECCCCcc
Confidence            4455555555555555433   44555666666666666653               33557888999999999988322


Q ss_pred             Ccccc-cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecce--ecccccCCCcccCCCccceEeee
Q 044279          100 DTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLES--INIYFGDQGRTYCFRNLRHLSVK  172 (305)
Q Consensus       100 ~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~~~L~~L~L~  172 (305)
                      ..... ..+..    .++|+.|+++.+.+....    ..+++|+.|++++|.+++  ++..+      ..+++|+.|+++
T Consensus       412 ~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~l~~L~~L~Ls  481 (606)
T 3vq2_A          412 KRVTEFSAFLS----LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF------ANTTNLTFLDLS  481 (606)
T ss_dssp             ESTTTTTTTTT----CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------TTCTTCCEEECT
T ss_pred             CCccChhhhhc----cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh------ccCCCCCEEECC
Confidence            11111 12222    244999999966555433    678999999999999765  34333      678999999999


Q ss_pred             CCCCCccC-C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCC-CC
Q 044279          173 DCHFMTDL-K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLP-SL  249 (305)
Q Consensus       173 ~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L  249 (305)
                      +| .++.. + .+..+++|++|++++|......+.            .+..+++|+.|++++| .++.++.....++ +|
T Consensus       482 ~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L  547 (606)
T 3vq2_A          482 KC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS------------HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSL  547 (606)
T ss_dssp             TS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGG------------GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTC
T ss_pred             CC-cCCccChhhhcccccCCEEECCCCcCCCcCHH------------HccCCCcCCEEECCCC-cCcccCHhHhhhcccC
Confidence            99 66554 3 578899999999999865433333            6788999999999999 7889988777787 59


Q ss_pred             ceEEeeCCCCCCCCC
Q 044279          250 KTISVYDCPGLRKLP  264 (305)
Q Consensus       250 ~~L~l~~c~~l~~~~  264 (305)
                      +.|++++++.....+
T Consensus       548 ~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          548 AFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEECCSCCCCCSST
T ss_pred             cEEEccCCCcccCCc
Confidence            999999987655443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=5.5e-18  Score=156.52  Aligned_cols=91  Identities=15%  Similarity=0.101  Sum_probs=49.4

Q ss_pred             CCCccceEeeeCCCCCcc--CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-
Q 044279          162 CFRNLRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-  238 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  238 (305)
                      .+++|++|++++| .+++  ...+..+++|++|++++|.... ++         ..+..++.+++|++|++++| .++. 
T Consensus       322 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~---------~~~~~~~~l~~L~~L~Ls~N-~l~~~  389 (520)
T 2z7x_B          322 KISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKE-LS---------KIAEMTTQMKSLQQLDISQN-SVSYD  389 (520)
T ss_dssp             SCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCB-HH---------HHHHHHTTCTTCCEEECCSS-CCBCC
T ss_pred             hCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCc-cc---------cchHHHhhCCCCCEEECCCC-cCCcc
Confidence            3455555555555 3333  1234455556666655544321 11         01124567778888888877 4544 


Q ss_pred             ecCC-CCCCCCCceEEeeCCCCCCCCC
Q 044279          239 ICCR-AVPLPSLKTISVYDCPGLRKLP  264 (305)
Q Consensus       239 ~~~~-~~~~~~L~~L~l~~c~~l~~~~  264 (305)
                      ++.. ...+++|+.|++++|..-..+|
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred             cccchhccCccCCEEECcCCCCCcchh
Confidence            5543 3456788888887775434433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=5.4e-19  Score=171.16  Aligned_cols=242  Identities=16%  Similarity=0.166  Sum_probs=133.8

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCc-cc--cCCccccccc-------ccceeeccccceeeceEEEee
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTK-IR--ELPAGIKYLK-------NLKILRLDVFSWFSTELVALH   70 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~~~~~~~~l~~   70 (305)
                      +++|++|++++|...+.+|..++++++|++|++++|+ +.  .+|..++.++       +|++|++++|.+         
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L---------  560 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL---------  560 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC---------
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC---------
Confidence            4567777777774455667667777777777777775 65  3666666555       777777777663         


Q ss_pred             ccccccccccc--cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCC-ccEEEEec
Q 044279           71 HNFCCATTVLA--GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDH-LETLEIVD  144 (305)
Q Consensus        71 ~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~-L~~L~l~~  144 (305)
                            ..++.  .+..+++|+.|+++.  +....++.+..    .++|+.|+++.|.+..++   ..+++ |+.|++++
T Consensus       561 ------~~ip~~~~l~~L~~L~~L~Ls~--N~l~~lp~~~~----L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          561 ------EEFPASASLQKMVKLGLLDCVH--NKVRHLEAFGT----NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             ------CBCCCHHHHTTCTTCCEEECTT--SCCCBCCCCCT----TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             ------CccCChhhhhcCCCCCEEECCC--CCcccchhhcC----CCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence                  23444  455556666665555  22222221111    122555555544343333   33444 55555555


Q ss_pred             eecceecccccCC-----------------------Cc--ccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEEecc
Q 044279          145 CSLESINIYFGDQ-----------------------GR--TYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYVSDC  197 (305)
Q Consensus       145 ~~l~~~~~~~~~~-----------------------~~--~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~  197 (305)
                      |.++.+|..+...                       ..  ....++|+.|++++| .++.++.  +..+++|+.|++++|
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC
Confidence            5544443222100                       00  012235666666666 4444431  225667777777775


Q ss_pred             ccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCC--CCCCCceEEeeCCCCCCCCCCCCcccc
Q 044279          198 QVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV--PLPSLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      . +..++.....    .......++++|+.|+|++| .++.++....  .+++|+.|++++| .+..+|..+..++
T Consensus       708 ~-L~~ip~~~~~----~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~  776 (876)
T 4ecn_A          708 L-MTSIPENSLK----PKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSS  776 (876)
T ss_dssp             C-CSCCCTTSSS----CTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCT
T ss_pred             c-CCccChHHhc----cccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCC
Confidence            4 3344431110    00001234558999999998 7778877665  7899999999877 5666887777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=2.4e-18  Score=159.88  Aligned_cols=81  Identities=26%  Similarity=0.284  Sum_probs=45.1

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      ++|++|++++| .++.++ ..++++++|++|++++|++..+|.. ++.+++|++|++++|.+.             ....
T Consensus        50 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~  115 (549)
T 2z81_A           50 ANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-------------TLGV  115 (549)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS-------------SSCS
T ss_pred             CcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc-------------ccch
Confidence            45555555555 444443 3455566666666666655555443 556666666666665532             1123


Q ss_pred             cccccCccCccceeEEE
Q 044279           80 LAGLESLENIHDISITL   96 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~   96 (305)
                      +..+..+++|+.|++++
T Consensus       116 ~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A          116 TSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             SCSCTTCTTCCEEEEEE
T ss_pred             hhhhhccCCccEEECCC
Confidence            44566666677766666

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=1.5e-18  Score=161.26  Aligned_cols=82  Identities=28%  Similarity=0.368  Sum_probs=63.0

Q ss_pred             CCcccEEeCCCCCCccccchh-hhcccccccccccCCcccc--CCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRE--LPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT   77 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~   77 (305)
                      +++|++|++++| .+..++.. ++++++|++|++++|.+..  .|..++.+++|++|++++|....             .
T Consensus        73 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-------------~  138 (549)
T 2z81_A           73 LGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-------------E  138 (549)
T ss_dssp             CTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------E
T ss_pred             cccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-------------c
Confidence            578999999999 88877755 9999999999999999884  46679999999999999987321             1


Q ss_pred             cccccccCccCccceeEEE
Q 044279           78 TVLAGLESLENIHDISITL   96 (305)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~   96 (305)
                      .....+..+++|+.|++++
T Consensus       139 ~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          139 IRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             ECTTTTTTCCEEEEEEEEE
T ss_pred             cCHhhhhcccccCeeeccC
Confidence            1123455566666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=7.5e-19  Score=151.67  Aligned_cols=189  Identities=19%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279           23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH  102 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  102 (305)
                      ..+.+|++|++++|.+..+| .+..+++|++|++++|.+.               ..+. +..+++|+.|++++  +...
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~---------------~~~~-~~~l~~L~~L~L~~--n~l~   98 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT---------------DLAP-LKNLTKITELELSG--NPLK   98 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------CCGG-GTTCCSCCEEECCS--CCCS
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC---------------CChh-HccCCCCCEEEccC--CcCC
Confidence            34445555555555544443 3444555555555554421               1112 44445555555544  2222


Q ss_pred             cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279          103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      .++.+...    ++|+.|+++.+.++.++  ..+++|+.|++++|.++.++. +      ..+++|+.|++++| .++++
T Consensus        99 ~~~~~~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l------~~l~~L~~L~l~~n-~l~~~  166 (308)
T 1h6u_A           99 NVSAIAGL----QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-L------AGLTNLQYLSIGNA-QVSDL  166 (308)
T ss_dssp             CCGGGTTC----TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-G------GGCTTCCEEECCSS-CCCCC
T ss_pred             CchhhcCC----CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-c------cCCCCccEEEccCC-cCCCC
Confidence            22222222    12555555544444433  556677777777776655543 1      45677777777777 66666


Q ss_pred             CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279          181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  258 (305)
                      +.+..+++|+.|++++|.. ..+++             +..+++|++|++++| .++.++. ...+++|+.|++++++
T Consensus       167 ~~l~~l~~L~~L~l~~n~l-~~~~~-------------l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          167 TPLANLSKLTTLKADDNKI-SDISP-------------LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GGGTTCTTCCEEECCSSCC-CCCGG-------------GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred             hhhcCCCCCCEEECCCCcc-CcChh-------------hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe
Confidence            5566677777777777543 22221             456677777777776 5555553 4567777777776663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=1.6e-18  Score=144.13  Aligned_cols=107  Identities=19%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             cCCCcc---EEEEece-ecceecccccCCCcccCCCccc-eEeeeCCCCCccCCc-CCCCCCCCEEEEeccccccccccc
Q 044279          133 RMDHLE---TLEIVDC-SLESINIYFGDQGRTYCFRNLR-HLSVKDCHFMTDLKW-IRCAPNLQFLYVSDCQVLSEIIGT  206 (305)
Q Consensus       133 ~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~  206 (305)
                      .+++|+   .|++++| .++.++...+     ..+++|+ .|++++| .++.++. ....++|++|++++|..++.+++ 
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-  197 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-  197 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-
T ss_pred             cccccccccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-
Confidence            344444   8888888 6777775542     5678888 8888887 5566542 22236788888888755555554 


Q ss_pred             cCCCCCcccccccccc-CccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279          207 YESPGTSEIEESHHFL-SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       207 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  259 (305)
                                ..+..+ ++|+.|+++++ .++.++..  .+++|+.|+++++..
T Consensus       198 ----------~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          198 ----------DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             ----------TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred             ----------HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence                      245667 88888888887 67777654  678888888877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.5e-18  Score=152.60  Aligned_cols=226  Identities=15%  Similarity=0.156  Sum_probs=168.8

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +...+.+.+++ .++++|..+.  ++|++|++++|++..+|. .+..+++|++|++++|.+.              ...+
T Consensus        31 ~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~   93 (353)
T 2z80_A           31 DRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--------------TIEE   93 (353)
T ss_dssp             CTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--------------EECT
T ss_pred             CCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--------------ccCH
Confidence            44556788888 8889998654  589999999999998877 5899999999999999852              2334


Q ss_pred             ccccCccCccceeEEEeecCcccccc--cccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEecee-cceecc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCR--FQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCS-LESINI  152 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~  152 (305)
                      ..+..+++|+.|++++  +....+..  +...    ++|++|+++.+.+..++     ..+++|+.|++++|. ++.++.
T Consensus        94 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l----~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~  167 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSY--NYLSNLSSSWFKPL----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR  167 (353)
T ss_dssp             TTTTTCTTCCEEECCS--SCCSSCCHHHHTTC----TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             hhcCCCCCCCEEECCC--CcCCcCCHhHhCCC----ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence            5688999999999998  43333222  2233    34999999966666554     578999999999996 777765


Q ss_pred             cccCCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279          153 YFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL  230 (305)
Q Consensus       153 ~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  230 (305)
                      ..     +..+++|++|++++| .++..  ..+..+++|++|++++|. +..++.           .....+++|+.|++
T Consensus       168 ~~-----~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~~~~L~~L~L  229 (353)
T 2z80_A          168 KD-----FAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE-----------IFVDVTSSVECLEL  229 (353)
T ss_dssp             TT-----TTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSC-STTHHH-----------HHHHHTTTEEEEEE
T ss_pred             HH-----ccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCc-cccchh-----------hhhhhcccccEEEC
Confidence            44     267899999999999 55554  367789999999999976 444443           13446889999999


Q ss_pred             cCcccCceec--------------------------------CCCCCCCCCceEEeeCCCCCCCCCCCC-ccc
Q 044279          231 QHLPSLTSIC--------------------------------CRAVPLPSLKTISVYDCPGLRKLPLNS-GSA  270 (305)
Q Consensus       231 ~~~~~l~~~~--------------------------------~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~  270 (305)
                      +++ .++.++                                .....+++|+.|++++| .++.+|.++ ...
T Consensus       230 ~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l  300 (353)
T 2z80_A          230 RDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL  300 (353)
T ss_dssp             ESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             CCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC
Confidence            887 444322                                12246789999999887 677888775 444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.6e-18  Score=150.29  Aligned_cols=219  Identities=14%  Similarity=0.159  Sum_probs=169.6

Q ss_pred             ccEEeCCCCCCccccch-hhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++..+++.+ .+...+. .+..+++|++|++++|++..++ ..++.+++|++|++++|.+..               .+.
T Consensus        12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~   75 (317)
T 3o53_A           12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---------------TLD   75 (317)
T ss_dssp             EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE---------------EEE
T ss_pred             eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc---------------chh
Confidence            455666666 5554443 3567789999999999999776 469999999999999998532               222


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRT  160 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  160 (305)
                       +..+++|+.|++++  +...   .+...    ++|+.|+++.+.+..++ ..+++|+.|++++|.++.++...     +
T Consensus        76 -~~~l~~L~~L~Ls~--n~l~---~l~~~----~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~-----~  140 (317)
T 3o53_A           76 -LESLSTLRTLDLNN--NYVQ---ELLVG----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-----E  140 (317)
T ss_dssp             -ETTCTTCCEEECCS--SEEE---EEEEC----TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBC-----T
T ss_pred             -hhhcCCCCEEECcC--Cccc---cccCC----CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchh-----h
Confidence             88899999999988  3332   22222    45999999977787777 66889999999999988776544     2


Q ss_pred             cCCCccceEeeeCCCCCccCC--cC-CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCc
Q 044279          161 YCFRNLRHLSVKDCHFMTDLK--WI-RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~--~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                      ..+++|++|++++| .++.++  .+ ..+++|++|++++|. +..++.             ...+++|++|++++| .++
T Consensus       141 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~  204 (317)
T 3o53_A          141 GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLA  204 (317)
T ss_dssp             GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCC
T ss_pred             hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc-------------ccccccCCEEECCCC-cCC
Confidence            67899999999999 666642  33 468999999999976 444432             235899999999999 888


Q ss_pred             eecCCCCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279          238 SICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA  270 (305)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  270 (305)
                      .++.....+++|+.|++++| .++.+|..+...
T Consensus       205 ~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l  236 (317)
T 3o53_A          205 FMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS  236 (317)
T ss_dssp             EECGGGGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred             cchhhhcccCcccEEECcCC-cccchhhHhhcC
Confidence            88777778999999999887 777888877655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=3.6e-17  Score=152.54  Aligned_cols=93  Identities=16%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             CCCccceEeeeCCCCCcc-C-CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-
Q 044279          162 CFRNLRHLSVKDCHFMTD-L-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-  238 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  238 (305)
                      .+++|++|++++| .+++ . ..+..+++|++|++++|. +..++.         .+..+..+++|+.|++++| .++. 
T Consensus       351 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------~~~~~~~l~~L~~L~l~~N-~l~~~  418 (562)
T 3a79_B          351 SPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNG-LKNFFK---------VALMTKNMSSLETLDVSLN-SLNSH  418 (562)
T ss_dssp             SCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSC-CCBTTH---------HHHTTTTCTTCCEEECTTS-CCBSC
T ss_pred             CCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCC-cCCccc---------chhhhcCCCCCCEEECCCC-cCCCc
Confidence            4556666666666 4433 2 245566666666666654 222211         1124567778888888887 4544 


Q ss_pred             ecCC-CCCCCCCceEEeeCCCCCCCCCCC
Q 044279          239 ICCR-AVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       239 ~~~~-~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      ++.. ...+++|+.|++++|..-..+|..
T Consensus       419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  447 (562)
T 3a79_B          419 AYDRTCAWAESILVLNLSSNMLTGSVFRC  447 (562)
T ss_dssp             CSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred             cChhhhcCcccCCEEECCCCCCCcchhhh
Confidence            5543 345678888888777543444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=9.5e-18  Score=141.99  Aligned_cols=196  Identities=20%  Similarity=0.204  Sum_probs=130.7

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ..+.++++++ .++.+|..+.  .++++|++++|++..+|. .+..+++|++|++++|.+               ..++.
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------~~i~~   78 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---------------QTLPA   78 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC---------------SCCCT
T ss_pred             CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc---------------CeeCh
Confidence            4567788887 7777776443  567888888888777665 477788888888888764               23332


Q ss_pred             -cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279           82 -GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT  160 (305)
Q Consensus        82 -~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  160 (305)
                       .+..+++|+.|+++.  +....+.   ..                   ....+++|+.|++++|.++.++...+     
T Consensus        79 ~~~~~l~~L~~L~l~~--n~l~~~~---~~-------------------~~~~l~~L~~L~l~~n~l~~~~~~~~-----  129 (270)
T 2o6q_A           79 GIFKELKNLETLWVTD--NKLQALP---IG-------------------VFDQLVNLAELRLDRNQLKSLPPRVF-----  129 (270)
T ss_dssp             TTTSSCTTCCEEECCS--SCCCCCC---TT-------------------TTTTCSSCCEEECCSSCCCCCCTTTT-----
T ss_pred             hhhcCCCCCCEEECCC--CcCCcCC---Hh-------------------HcccccCCCEEECCCCccCeeCHHHh-----
Confidence             346677777777766  2221111   00                   00346778888888877777665442     


Q ss_pred             cCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279          161 YCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS  238 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  238 (305)
                      ..+++|++|++++| .++.++  .+..+++|++|++++|. +..+++           ..+..+++|++|++++| .++.
T Consensus       130 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~  195 (270)
T 2o6q_A          130 DSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-----------GAFDKLTELKTLKLDNN-QLKR  195 (270)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSS-CCSC
T ss_pred             CcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh-----------hHhccCCCcCEEECCCC-cCCc
Confidence            56788888888888 666654  36677888888888865 444433           24567788888888887 6666


Q ss_pred             ecCC-CCCCCCCceEEeeCCCC
Q 044279          239 ICCR-AVPLPSLKTISVYDCPG  259 (305)
Q Consensus       239 ~~~~-~~~~~~L~~L~l~~c~~  259 (305)
                      ++.. ...+++|+.|++++++.
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCHHHhccccCCCEEEecCCCe
Confidence            6654 34678888888877753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.6e-17  Score=161.90  Aligned_cols=61  Identities=31%  Similarity=0.386  Sum_probs=36.6

Q ss_pred             CCcccEEeCCCCCCcccc-chhhhcccccccccccCCccccC-Ccccccccccceeeccccce
Q 044279            1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~   61 (305)
                      +++|++|++++|.....+ |..++++++|++|++++|++..+ |..++.+++|++|++++|.+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence            345666666666444455 34466666666666666666543 45566666666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.4e-17  Score=162.43  Aligned_cols=82  Identities=23%  Similarity=0.306  Sum_probs=64.2

Q ss_pred             CCcccEEeCCCCCCcccc-chhhhcccccccccccCCcccc-CCcc--cccccccceeeccccceeeceEEEeecccccc
Q 044279            1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRE-LPAG--IKYLKNLKILRLDVFSWFSTELVALHHNFCCA   76 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~   76 (305)
                      +++|++|++++| .+..+ |..++++++|++|++++|++.. +|..  ++.+++|++|++++|.+..             
T Consensus        72 L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-------------  137 (844)
T 3j0a_A           72 LPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-------------  137 (844)
T ss_dssp             CTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-------------
T ss_pred             CCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-------------
Confidence            578999999999 77766 6779999999999999998874 5554  8899999999999998532             


Q ss_pred             ccccccccCccCccceeEEE
Q 044279           77 TTVLAGLESLENIHDISITL   96 (305)
Q Consensus        77 ~~~~~~l~~l~~L~~L~l~~   96 (305)
                      ......+.++++|+.|++++
T Consensus       138 ~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A          138 LYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             CCCCGGGGTCSSCCEEEEES
T ss_pred             cccchhHhhCCCCCEEECCC
Confidence            12224566777777777766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=1.5e-18  Score=157.57  Aligned_cols=232  Identities=16%  Similarity=0.155  Sum_probs=107.2

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccc-cCCccccccccc-------------ceeeccccceeec---
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR-ELPAGIKYLKNL-------------KILRLDVFSWFST---   64 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L-------------~~L~l~~~~~~~~---   64 (305)
                      .+|++|++++| .++++|+.++++++|++|++++|++. .+|..++.+.+|             ++|++++|.+..+   
T Consensus        11 ~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           11 TFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             ccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            47899999999 77999999999999999999999876 888888888875             7777777764321   


Q ss_pred             ----eEE-EeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCc
Q 044279           65 ----ELV-ALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHL  137 (305)
Q Consensus        65 ----~~~-l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L  137 (305)
                          +.+ +.++.++   .++.   ..++|+.|++++  +....++.      ...+|++|+++.+.++.++  ..+++|
T Consensus        90 ~~~L~~L~l~~n~l~---~lp~---~~~~L~~L~l~~--n~l~~l~~------~~~~L~~L~L~~n~l~~lp~~~~l~~L  155 (454)
T 1jl5_A           90 PPHLESLVASCNSLT---ELPE---LPQSLKSLLVDN--NNLKALSD------LPPLLEYLGVSNNQLEKLPELQNSSFL  155 (454)
T ss_dssp             CTTCSEEECCSSCCS---SCCC---CCTTCCEEECCS--SCCSCCCS------CCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             cCCCCEEEccCCcCC---cccc---ccCCCcEEECCC--CccCcccC------CCCCCCEEECcCCCCCCCcccCCCCCC
Confidence                000 1111110   0111   113444444444  21111111      1134666666644444444  555666


Q ss_pred             cEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-------
Q 044279          138 ETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-------  210 (305)
Q Consensus       138 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------  210 (305)
                      +.|++++|.++.++         ...++|++|++++| .++.++.+..+++|++|++++|.. ..++......       
T Consensus       156 ~~L~l~~N~l~~lp---------~~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~  224 (454)
T 1jl5_A          156 KIIDVDNNSLKKLP---------DLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGN  224 (454)
T ss_dssp             CEEECCSSCCSCCC---------CCCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCS
T ss_pred             CEEECCCCcCcccC---------CCcccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC-CcCCCCcCcccEEECcC
Confidence            66666666655544         22346666666666 555555566667777777776543 2222100000       


Q ss_pred             -CCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          211 -GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       211 -~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                       .-..++ .++.+++|++|++++| .++.++.   .+++|+.|++++| .+..+|.
T Consensus       225 n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~  274 (454)
T 1jl5_A          225 NILEELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE  274 (454)
T ss_dssp             SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC
T ss_pred             CcCCccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc
Confidence             000112 2445666666666665 4444432   2355666666554 3444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=5.2e-18  Score=159.09  Aligned_cols=217  Identities=19%  Similarity=0.181  Sum_probs=108.4

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeece-------EE-Eeeccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTE-------LV-ALHHNF   73 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~-------~~-l~~~~~   73 (305)
                      ++|++|++++| .++.+|.   .+++|++|++++|+++.+|.   .+++|++|++++|.+..+.       .+ +.++.+
T Consensus        61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l  133 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL  133 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCC
T ss_pred             CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCC
Confidence            46777888877 6777765   56777777777777777765   5677777777777643210       00 111111


Q ss_pred             cccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceeccc
Q 044279           74 CCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIY  153 (305)
Q Consensus        74 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  153 (305)
                         ..++.   .+++|+.|+++.  +....++.      ...+|+.|+++.|.++.++..+++|+.|++++|.++.++..
T Consensus       134 ---~~lp~---~l~~L~~L~Ls~--N~l~~l~~------~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~  199 (622)
T 3g06_A          134 ---TSLPV---LPPGLQELSVSD--NQLASLPA------LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL  199 (622)
T ss_dssp             ---SCCCC---CCTTCCEEECCS--SCCSCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred             ---CcCCC---CCCCCCEEECcC--CcCCCcCC------ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc
Confidence               11111   125556666555  22222211      11224444444333333333344555555555554443311


Q ss_pred             ccCCCc-----------ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCcccccccccc
Q 044279          154 FGDQGR-----------TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL  222 (305)
Q Consensus       154 ~~~~~~-----------~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (305)
                      ......           ...+++|+.|++++| .++.++  ..+++|+.|++++|. +..++.               .+
T Consensus       200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------------~~  260 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM---------------LP  260 (622)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC---------------CC
T ss_pred             cchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc---------------cc
Confidence            000000           012244555555554 444443  234455555555543 222211               45


Q ss_pred             CccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279          223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  259 (305)
                      ++|+.|++++| .++.++.....+++|+.|++++|+.
T Consensus       261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            66777777776 5666665556677777777776653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=3.6e-18  Score=159.32  Aligned_cols=223  Identities=16%  Similarity=0.170  Sum_probs=130.5

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++|++|++++| .+.++|..+..+ +|++|++++|.+..+|.  ..+++|++|++.+|...               ....
T Consensus       282 ~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~---------------~~~~  342 (570)
T 2z63_A          282 TNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGG---------------NAFS  342 (570)
T ss_dssp             TTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSC---------------CBCC
T ss_pred             CcccEEEecCc-cchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccc---------------cccc
Confidence            34555555555 444555545554 55555555555555443  34455555555555421               1111


Q ss_pred             cccCccCccceeEEEeecCcccc----cccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecc-c
Q 044279           82 GLESLENIHDISITLCFVDTHAF----CRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINI-Y  153 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~-~  153 (305)
                      . ..+++|+.|+++.  +.....    ..+...    ++|+.|+++.+.+...+   ..+++|+.|++++|.+...+. .
T Consensus       343 ~-~~~~~L~~L~l~~--n~l~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          343 E-VDLPSLEFLDLSR--NGLSFKGCCSQSDFGT----TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             C-CBCTTCCEEECCS--SCCBEEEEEEHHHHTC----SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred             c-ccCCCCCEEeCcC--CccCcccccccccccc----CccCEEECCCCccccccccccccCCCCEEEccCCccccccchh
Confidence            1 5566677776665  322221    112222    23777777755554444   556777777777777555432 1


Q ss_pred             ccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEecccccc-ccccccCCCCCccccccccccCccceeec
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVLS-EIIGTYESPGTSEIEESHHFLSNLMVIDL  230 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  230 (305)
                      .     +..+++|++|++++| .+... + .+..+++|++|++++|.... .++            ..+..+++|+.|++
T Consensus       416 ~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l  477 (570)
T 2z63_A          416 V-----FLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDL  477 (570)
T ss_dssp             T-----TTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEEC
T ss_pred             h-----hhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEEC
Confidence            2     256777888888877 44432 2 45677888888888876432 233            36778899999999


Q ss_pred             cCcccCcee-cCCCCCCCCCceEEeeCCCCCCCCCCC-Cccc
Q 044279          231 QHLPSLTSI-CCRAVPLPSLKTISVYDCPGLRKLPLN-SGSA  270 (305)
Q Consensus       231 ~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~  270 (305)
                      ++| .++.+ +.....+++|+.|++++| .+..+|.. +...
T Consensus       478 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  517 (570)
T 2z63_A          478 SQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL  517 (570)
T ss_dssp             TTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred             CCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc
Confidence            998 66665 555667899999999887 55655543 4433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=4.5e-18  Score=158.66  Aligned_cols=94  Identities=22%  Similarity=0.244  Sum_probs=49.5

Q ss_pred             CCcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceE--E---------
Q 044279            1 MHALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTEL--V---------   67 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~--~---------   67 (305)
                      +++|++|++++| .++.++ ..++++++|++|++++|++..+| ..++.+++|++|++++|.+..+..  +         
T Consensus        51 l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             CSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred             CCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence            355666666666 555554 33566666666666666655443 335555555655555554432200  0         


Q ss_pred             -EeeccccccccccccccCccCccceeEEE
Q 044279           68 -ALHHNFCCATTVLAGLESLENIHDISITL   96 (305)
Q Consensus        68 -l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   96 (305)
                       +.++.+. ...++..+.++++|+.|++++
T Consensus       130 ~L~~n~l~-~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A          130 NVAHNLIQ-SFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             ECCSSCCC-CCCCCGGGGGCTTCCEEECTT
T ss_pred             ecCCCccc-eecChhhhcccCCCCEEeCcC
Confidence             1111110 112456677777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=5.6e-18  Score=146.19  Aligned_cols=192  Identities=18%  Similarity=0.262  Sum_probs=156.9

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|+++++ .++.+| .+..+++|++|++++|.+..++. +..+++|++|++++|.+.               . .
T Consensus        40 l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~---------------~-~  100 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK---------------N-V  100 (308)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS---------------C-C
T ss_pred             cCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC---------------C-c
Confidence            357999999999 888887 58999999999999999998877 999999999999999853               2 2


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      ..+..+++|+.|++++  +....+..+...    ++|+.|+++.+.++.++  ..+++|+.|++++|.+++++. +    
T Consensus       101 ~~~~~l~~L~~L~l~~--n~l~~~~~l~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l----  169 (308)
T 1h6u_A          101 SAIAGLQSIKTLDLTS--TQITDVTPLAGL----SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-L----  169 (308)
T ss_dssp             GGGTTCTTCCEEECTT--SCCCCCGGGTTC----TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G----
T ss_pred             hhhcCCCCCCEEECCC--CCCCCchhhcCC----CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-h----
Confidence            4688999999999988  444444443333    34999999977777766  788999999999999887764 2    


Q ss_pred             cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS  238 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  238 (305)
                        ..+++|+.|++++| .+++++.+..+++|++|++++|.. ..++             .+..+++|+.|+++++ .++.
T Consensus       170 --~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l-~~~~-------------~l~~l~~L~~L~l~~N-~i~~  231 (308)
T 1h6u_A          170 --ANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQI-SDVS-------------PLANTSNLFIVTLTNQ-TITN  231 (308)
T ss_dssp             --TTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCC-CBCG-------------GGTTCTTCCEEEEEEE-EEEC
T ss_pred             --cCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCcc-Cccc-------------cccCCCCCCEEEccCC-eeec
Confidence              67899999999999 788887788899999999999764 3333             2568999999999998 4554


Q ss_pred             ec
Q 044279          239 IC  240 (305)
Q Consensus       239 ~~  240 (305)
                      .+
T Consensus       232 ~~  233 (308)
T 1h6u_A          232 QP  233 (308)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=7.9e-18  Score=143.99  Aligned_cols=193  Identities=19%  Similarity=0.143  Sum_probs=120.3

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++.++++++ .++.+|..+.  ++++.|++++|.+..++ ..+..+++|++|++++|.+.               .+
T Consensus         9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------~~   70 (290)
T 1p9a_G            9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---------------KL   70 (290)
T ss_dssp             STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---------------EE
T ss_pred             cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC---------------cc
Confidence            356677777777 6667765543  56777777777776543 34667777777777777642               11


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccC
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGD  156 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~  156 (305)
                      +. ...+++|+.|++++  +                          .+..++   ..+++|+.|++++|.++.++...+ 
T Consensus        71 ~~-~~~l~~L~~L~Ls~--N--------------------------~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-  120 (290)
T 1p9a_G           71 QV-DGTLPVLGTLDLSH--N--------------------------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-  120 (290)
T ss_dssp             EC-CSCCTTCCEEECCS--S--------------------------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT-
T ss_pred             cC-CCCCCcCCEEECCC--C--------------------------cCCcCchhhccCCCCCEEECCCCcCcccCHHHH-
Confidence            11 24556666666655  2                          222222   446677777777777666664432 


Q ss_pred             CCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          157 QGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       157 ~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                          ..+++|++|++++| .++.++  .+..+++|+.|++++|. +..++.           ..+..+++|+.|+++++ 
T Consensus       121 ----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-----------~~~~~l~~L~~L~L~~N-  182 (290)
T 1p9a_G          121 ----RGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-----------GLLNGLENLDTLLLQEN-  182 (290)
T ss_dssp             ----TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-----------TTTTTCTTCCEEECCSS-
T ss_pred             ----cCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCH-----------HHhcCcCCCCEEECCCC-
Confidence                56677777777777 555554  24566777777777754 444443           23456777777777777 


Q ss_pred             cCceecCCCCCCCCCceEEeeCCCC
Q 044279          235 SLTSICCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       235 ~l~~~~~~~~~~~~L~~L~l~~c~~  259 (305)
                      .++.++......++|+.+++++++.
T Consensus       183 ~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          183 SLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCCccChhhcccccCCeEEeCCCCc
Confidence            6667776666667777777776653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=1.2e-18  Score=150.73  Aligned_cols=223  Identities=16%  Similarity=0.117  Sum_probs=140.0

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccc--cCCcccc-------cccccceeeccccceeeceEEEeeccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR--ELPAGIK-------YLKNLKILRLDVFSWFSTELVALHHNF   73 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~l~~~~~   73 (305)
                      +|++|++++| .+ .+|..+...  |+.|+++++.+.  .+|..+.       .+++|++|++++|.+            
T Consensus        44 ~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l------------  107 (312)
T 1wwl_A           44 SLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV------------  107 (312)
T ss_dssp             ECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC------------
T ss_pred             CceeEeeccc-cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc------------
Confidence            4667777777 55 677665554  888888888774  4555554       678888888888875            


Q ss_pred             cccccccccc--cCccCccceeEEEeecCcccccc-cccCC-CccccceEEEEEcCCCcccc----ccCCCccEEEEece
Q 044279           74 CCATTVLAGL--ESLENIHDISITLCFVDTHAFCR-FQSSP-KLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDC  145 (305)
Q Consensus        74 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~  145 (305)
                        ....+..+  ..+++|+.|+++++  .....+. +.... ...++|++|+++.+.+..++    ..+++|+.|++++|
T Consensus       108 --~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          108 --TGTAPPPLLEATGPDLNILNLRNV--SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             --BSCCCCCSSSCCSCCCSEEEEESC--BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred             --cchhHHHHHHhcCCCccEEEccCC--CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence              22444444  77888888888873  2222211 11110 01145888888866665554    56778888888888


Q ss_pred             ecce-e--cccccCCCcccCCCccceEeeeCCCCCccCC-----cCCCCCCCCEEEEeccccccccccccCCCCCccccc
Q 044279          146 SLES-I--NIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-----WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE  217 (305)
Q Consensus       146 ~l~~-~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  217 (305)
                      .+.. +  +....    +..+++|++|++++| .++.++     .+..+++|++|++++|......+.           .
T Consensus       184 ~l~~~~~~~~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~  247 (312)
T 1wwl_A          184 PELGERGLISALC----PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------P  247 (312)
T ss_dssp             TTCHHHHHHHHSC----TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------S
T ss_pred             CcCcchHHHHHHH----hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------h
Confidence            7332 1  11211    156788888888888 555432     223567888888888664332211           1


Q ss_pred             cccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          218 SHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       218 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      .+..+++|++|++++| .++.++....  ++|+.|+++++ +++.+|.
T Consensus       248 ~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~  291 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS  291 (312)
T ss_dssp             CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred             hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh
Confidence            3445678888888887 6666665443  78888888766 5666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.74  E-value=5.6e-17  Score=147.22  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++|++|++++| .++.+| .++++++|++|++++|++..+|..+   .+|++|++++|.+.               .++ 
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~---------------~l~-  189 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE---------------ELP-  189 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS---------------SCC-
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC---------------cCc-
Confidence            47888888888 777787 4888888888888888887776543   47778888777642               222 


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecce
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLES  149 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~  149 (305)
                      .+..+++|+.|++++  +....++..      ..+|+.|+++.+.+..++  ..+++|+.|++++|.++.
T Consensus       190 ~~~~l~~L~~L~l~~--N~l~~l~~~------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          190 ELQNLPFLTAIYADN--NSLKKLPDL------PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCTTCTTCCEEECCS--SCCSSCCCC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccCCCCCCEEECCC--CcCCcCCCC------cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence            466666666666665  222222111      123555555533343333  344455555555544443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=8.1e-18  Score=142.58  Aligned_cols=204  Identities=19%  Similarity=0.192  Sum_probs=131.1

Q ss_pred             hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279           22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT  101 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  101 (305)
                      ...+.+|+.|+++++.+..++ .++.+++|++|++++|.+.               . +..+..+++|+.|++++  +..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~---------------~-~~~l~~l~~L~~L~L~~--n~l   97 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH---------------D-ISALKELTNLTYLILTG--NQL   97 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC---------------C-CGGGTTCTTCCEEECTT--SCC
T ss_pred             cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC---------------C-chhhcCCCCCCEEECCC--Ccc
Confidence            345556666666666555553 3555666666666666531               1 23455566666666655  222


Q ss_pred             ccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCC
Q 044279          102 HAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFM  177 (305)
Q Consensus       102 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l  177 (305)
                      ..+..  ......++|++|+++.+.++.++    ..+++|+.|++++|.++.++....     ..+++|+.|++++| .+
T Consensus        98 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l  169 (272)
T 3rfs_A           98 QSLPN--GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF-----DKLTNLTELDLSYN-QL  169 (272)
T ss_dssp             CCCCT--TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CC
T ss_pred             CccCh--hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh-----ccCccCCEEECCCC-Cc
Confidence            11111  00011123666666644444444    457889999999998887776542     67899999999999 67


Q ss_pred             ccCCc--CCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEee
Q 044279          178 TDLKW--IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVY  255 (305)
Q Consensus       178 ~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  255 (305)
                      +.++.  +..+++|++|++++|.. ..+++           ..++.+++|+.|++++|+-       .+.+++|+.++++
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~  230 (272)
T 3rfs_A          170 QSLPEGVFDKLTQLKDLRLYQNQL-KSVPD-----------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEW  230 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCC-SCCCT-----------TTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHH
T ss_pred             CccCHHHhcCCccCCEEECCCCcC-CccCH-----------HHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHH
Confidence            77653  67889999999999764 34443           2567889999999999842       2346788888887


Q ss_pred             CCCCCCCCCCCCcccc
Q 044279          256 DCPGLRKLPLNSGSAK  271 (305)
Q Consensus       256 ~c~~l~~~~~~~~~~~  271 (305)
                      .+..-..+|..+....
T Consensus       231 ~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          231 INKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHHTGGGBBCTTSCBC
T ss_pred             HHhCCCcccCcccccC
Confidence            7766667888777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=6.9e-17  Score=153.86  Aligned_cols=33  Identities=12%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             cceEeeeCCCCCccCC--cCCCCCCCCEEEEecccc
Q 044279          166 LRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       166 L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~  199 (305)
                      |+.|++++| .++.++  .+..+++|++|++++|..
T Consensus       250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             CCEEECCCC-CcCccCcccccCcccccEeeCCCCcc
Confidence            666666666 444432  355666777777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=2.2e-17  Score=157.30  Aligned_cols=219  Identities=22%  Similarity=0.262  Sum_probs=100.2

Q ss_pred             CCcccEEeCCCCCC-ccccchh-hhcc--cccccccccCCccccC-CcccccccccceeeccccceeeceEEEeeccccc
Q 044279            1 MHALAVLDLSYNFD-LVELPEA-IGKL--INLCHLNLSNTKIREL-PAGIKYLKNLKILRLDVFSWFSTELVALHHNFCC   75 (305)
Q Consensus         1 l~~L~~L~l~~~~~-~~~lp~~-~~~l--~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~   75 (305)
                      +++|++|++++|.. +..++.. +..+  .+|+.|++++|++..+ |..+..+++|++|++++|.+..            
T Consensus       352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------  419 (680)
T 1ziw_A          352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ------------  419 (680)
T ss_dssp             CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE------------
T ss_pred             ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc------------
Confidence            45677777777621 2233322 2222  3566666666666543 3346666666666666665421            


Q ss_pred             cccccccccCccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCc---ccc---ccCCCccEEEEeceec
Q 044279           76 ATTVLAGLESLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFS---SLD---FRMDHLETLEIVDCSL  147 (305)
Q Consensus        76 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~---~~~---~~~~~L~~L~l~~~~l  147 (305)
                       ......+..+++|+.|++++|  .....  ..+.    ..++|+.|+++.+.+.   ..+   ..+++|+.|++++|.+
T Consensus       420 -~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          420 -ELTGQEWRGLENIFEIYLSYN--KYLQLTRNSFA----LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             -ECCSGGGTTCTTCCEEECCSC--SEEECCTTTTT----TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred             -ccCcccccCcccccEEecCCC--CcceeChhhhh----cCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence             111134555566666665552  21111  1111    1123555555522221   111   3445555555555555


Q ss_pred             ceecccccCCCcccCCCccceEeeeCCCCCccCC----------cCCCCCCCCEEEEeccccccccccccCCCCCccccc
Q 044279          148 ESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK----------WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEE  217 (305)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  217 (305)
                      +.++....     ..+++|++|++++| .++.++          .+..+++|+.|++++|. +..++.           .
T Consensus       493 ~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-----------~  554 (680)
T 1ziw_A          493 ANINDDML-----EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV-----------E  554 (680)
T ss_dssp             CCCCTTTT-----TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT-----------T
T ss_pred             CcCChhhh-----ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH-----------H
Confidence            44443321     34555555555555 333220          13444555555555543 223332           1


Q ss_pred             cccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCC
Q 044279          218 SHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDC  257 (305)
Q Consensus       218 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c  257 (305)
                      .+.++++|+.|+++++ .++.++... ..+++|+.|++++|
T Consensus       555 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence            2344555555555554 444444332 24455555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=9.1e-17  Score=150.67  Aligned_cols=227  Identities=20%  Similarity=0.204  Sum_probs=131.8

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      ++++|+++++ .++.+|..+.  ++|++|++++|+++.+|.   .+++|++|++++|.+.               .++. 
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~---------------~lp~-   98 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT---------------SLPV-   98 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS---------------CCCC-
T ss_pred             CCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC---------------cCCC-
Confidence            5889999999 8899998665  899999999999999987   5789999999999852               3333 


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCc---
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGR---  159 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---  159 (305)
                        .+++|+.|+++.  +....++.      ...+|+.|+++.|.++.++..+++|+.|++++|.++.++........   
T Consensus        99 --~l~~L~~L~Ls~--N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L  168 (622)
T 3g06_A           99 --LPPGLLELSIFS--NPLTHLPA------LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWA  168 (622)
T ss_dssp             --CCTTCCEEEECS--CCCCCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             --CCCCCCEEECcC--CcCCCCCC------CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEEC
Confidence              567788888877  33333222      22346666666555555554456666666666665554421100000   


Q ss_pred             --------ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCC-----CCccccccccccCccc
Q 044279          160 --------TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP-----GTSEIEESHHFLSNLM  226 (305)
Q Consensus       160 --------~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~  226 (305)
                              ...+++|+.|++++| .++.++..  +++|+.|++++|. +..++......     ....+......+++|+
T Consensus       169 ~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~  244 (622)
T 3g06_A          169 YNNQLTSLPMLPSGLQELSVSDN-QLASLPTL--PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELK  244 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             CCCCCCCCcccCCCCcEEECCCC-CCCCCCCc--cchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCc
Confidence                    012355666666666 44444321  3445555555433 22222100000     0001111113456666


Q ss_pred             eeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCCCccc
Q 044279          227 VIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLNSGSA  270 (305)
Q Consensus       227 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  270 (305)
                      .|++++| .++.++.   .+++|+.|++++| .++.+|..+..+
T Consensus       245 ~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l  283 (622)
T 3g06_A          245 ELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL  283 (622)
T ss_dssp             EEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred             EEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence            6666666 5555554   4567777777665 555666655544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=3.3e-17  Score=140.09  Aligned_cols=150  Identities=17%  Similarity=0.171  Sum_probs=99.6

Q ss_pred             CcccEEeCCCCCCccccc-hhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            2 HALAVLDLSYNFDLVELP-EAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++++|++++| .++.++ ..+..+++|++|++++|.+..++.. +.+++|++|++++|.+               ..++
T Consensus        31 ~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l---------------~~l~   93 (290)
T 1p9a_G           31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL---------------QSLP   93 (290)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC---------------SSCC
T ss_pred             CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC---------------CcCc
Confidence            47899999999 788774 5699999999999999999988754 8899999999999984               4566


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT  160 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  160 (305)
                      ..+..+++|+.|+++.  +....+..  ...                    ..+++|+.|++++|.++.++...+     
T Consensus        94 ~~~~~l~~L~~L~l~~--N~l~~l~~--~~~--------------------~~l~~L~~L~L~~N~l~~~~~~~~-----  144 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSF--NRLTSLPL--GAL--------------------RGLGELQELYLKGNELKTLPPGLL-----  144 (290)
T ss_dssp             CCTTTCTTCCEEECCS--SCCCCCCS--STT--------------------TTCTTCCEEECTTSCCCCCCTTTT-----
T ss_pred             hhhccCCCCCEEECCC--CcCcccCH--HHH--------------------cCCCCCCEEECCCCCCCccChhhc-----
Confidence            7778888999998887  33222210  000                    234455555555555554443331     


Q ss_pred             cCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279          161 YCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~  198 (305)
                      ..+++|+.|++++| .++.++  .+..+++|++|++++|.
T Consensus       145 ~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          145 TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence            34555555555555 444443  23445555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=2.8e-17  Score=150.56  Aligned_cols=208  Identities=16%  Similarity=0.192  Sum_probs=161.7

Q ss_pred             ccchhhhcc----cccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccccccccCccCccc
Q 044279           17 ELPEAIGKL----INLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHD   91 (305)
Q Consensus        17 ~lp~~~~~l----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~   91 (305)
                      .+|..+..+    ++|++|++++|.+..++ ..++.+++|++|++++|.+.               ..++ +..+++|+.
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~~~~-l~~l~~L~~   84 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---------------ETLD-LESLSTLRT   84 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---------------EEEE-CTTCTTCCE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---------------CCcc-cccCCCCCE
Confidence            455555444    48999999999998775 46999999999999999853               2222 889999999


Q ss_pred             eeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEe
Q 044279           92 ISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLS  170 (305)
Q Consensus        92 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~  170 (305)
                      |++++  +...   .+...    ++|+.|+++.|.+..++ ..+++|+.|++++|.++.++...     +..+++|+.|+
T Consensus        85 L~Ls~--N~l~---~l~~~----~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~  150 (487)
T 3oja_A           85 LDLNN--NYVQ---ELLVG----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-----EGCRSRVQYLD  150 (487)
T ss_dssp             EECCS--SEEE---EEEEC----TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBC-----GGGGSSEEEEE
T ss_pred             EEecC--CcCC---CCCCC----CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchh-----hcCCCCCCEEE
Confidence            99988  3333   22222    45999999977787777 67899999999999987776544     26789999999


Q ss_pred             eeCCCCCccC-C-cCC-CCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCC
Q 044279          171 VKDCHFMTDL-K-WIR-CAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLP  247 (305)
Q Consensus       171 L~~~~~l~~~-~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  247 (305)
                      +++| .++.. + .+. .+++|++|++++|. +..++.             ...+++|+.|++++| .++.++.....++
T Consensus       151 Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~  214 (487)
T 3oja_A          151 LKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLAFMGPEFQSAA  214 (487)
T ss_dssp             CTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred             CCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc-------------cccCCCCCEEECCCC-CCCCCCHhHcCCC
Confidence            9999 66653 2 343 68999999999977 444432             336899999999999 7888877777899


Q ss_pred             CCceEEeeCCCCCCCCCCCCcccc
Q 044279          248 SLKTISVYDCPGLRKLPLNSGSAK  271 (305)
Q Consensus       248 ~L~~L~l~~c~~l~~~~~~~~~~~  271 (305)
                      +|+.|++++| .+..+|..+...+
T Consensus       215 ~L~~L~Ls~N-~l~~lp~~l~~l~  237 (487)
T 3oja_A          215 GVTWISLRNN-KLVLIEKALRFSQ  237 (487)
T ss_dssp             TCSEEECTTS-CCCEECTTCCCCT
T ss_pred             CccEEEecCC-cCcccchhhccCC
Confidence            9999999876 6777887766553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=2e-17  Score=140.38  Aligned_cols=194  Identities=21%  Similarity=0.204  Sum_probs=106.6

Q ss_pred             ccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccc
Q 044279           27 NLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFC  105 (305)
Q Consensus        27 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  105 (305)
                      +|++|++++|++..++. .+..+++|++|++++|.+.              ......+..+++|+.|+++++........
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--------------ccCHHHccCCcCCCEEECCCCccCccChh
Confidence            45555555555554433 3445555555555555421              11122344455555555544211111111


Q ss_pred             ccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceeccee--cccccCCCcccCCCccceEeeeCCCCCcc
Q 044279          106 RFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESI--NIYFGDQGRTYCFRNLRHLSVKDCHFMTD  179 (305)
Q Consensus       106 ~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  179 (305)
                      .+...    .+|+.|+++.+.+..++    ..+++|+.|++++|.++++  +..+      ..+++|++|++++| .++.
T Consensus        95 ~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~------~~l~~L~~L~Ls~N-~l~~  163 (276)
T 2z62_A           95 AFSGL----SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF------SNLTNLEHLDLSSN-KIQS  163 (276)
T ss_dssp             TTTTC----TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG------GGCTTCCEEECCSS-CCCE
T ss_pred             hhcCC----ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh------ccCCCCCEEECCCC-CCCc
Confidence            11111    22555555533333322    5677888888888887663  3232      66788888888888 5555


Q ss_pred             CC--cCCCCCCCC----EEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceE
Q 044279          180 LK--WIRCAPNLQ----FLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTI  252 (305)
Q Consensus       180 ~~--~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L  252 (305)
                      ++  .+..+++|+    +|++++|. +..+++            ......+|+.|++++| .++.++... ..+++|+.|
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~------------~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP------------GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSSC-CCEECT------------TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEE
T ss_pred             CCHHHhhhhhhccccceeeecCCCc-ccccCc------------cccCCCcccEEECCCC-ceeecCHhHhcccccccEE
Confidence            43  333344444    78888865 444443            2223447888888888 677776543 568888888


Q ss_pred             EeeCCCC
Q 044279          253 SVYDCPG  259 (305)
Q Consensus       253 ~l~~c~~  259 (305)
                      ++++++.
T Consensus       230 ~l~~N~~  236 (276)
T 2z62_A          230 WLHTNPW  236 (276)
T ss_dssp             ECCSSCB
T ss_pred             EccCCcc
Confidence            8887643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=3e-17  Score=139.28  Aligned_cols=196  Identities=21%  Similarity=0.189  Sum_probs=146.0

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      ++|++|++++| .++.++. .+.++++|++|++++|++..++. .+..+++|++|++++|.+.              ...
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~   92 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--------------SLA   92 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--------------EEC
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--------------ccC
Confidence            36899999999 8888875 68999999999999999987765 5889999999999999852              233


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcc--cc---ccCCCccEEEEeceecceecccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSS--LD---FRMDHLETLEIVDCSLESINIYF  154 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~---~~~~~L~~L~l~~~~l~~~~~~~  154 (305)
                      +..+..+++|+.|++..  +....+...  .....++|++|+++.+.+..  ++   ..+++|+.|++++|.++.++...
T Consensus        93 ~~~~~~l~~L~~L~l~~--n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVE--TNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             TTTTTTCTTCCEEECTT--SCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             hhhhcCCccccEEECCC--CCccccCch--hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            46788899999999987  333332221  11222459999999666655  33   77899999999999988776543


Q ss_pred             cCCCcccCCCccc----eEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279          155 GDQGRTYCFRNLR----HLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID  229 (305)
Q Consensus       155 ~~~~~~~~~~~L~----~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  229 (305)
                      .     ..+++|+    +|++++| .++.++ ......+|++|++++|. +..++.           ..+..+++|+.|+
T Consensus       169 ~-----~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~  230 (276)
T 2z62_A          169 L-----RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPD-----------GIFDRLTSLQKIW  230 (276)
T ss_dssp             G-----HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCT-----------TTTTTCCSCCEEE
T ss_pred             h-----hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCH-----------hHhcccccccEEE
Confidence            2     4455555    8999998 666654 33345689999999976 555544           2457899999999


Q ss_pred             ccCcc
Q 044279          230 LQHLP  234 (305)
Q Consensus       230 l~~~~  234 (305)
                      +++++
T Consensus       231 l~~N~  235 (276)
T 2z62_A          231 LHTNP  235 (276)
T ss_dssp             CCSSC
T ss_pred             ccCCc
Confidence            99884

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=6.8e-18  Score=145.93  Aligned_cols=212  Identities=19%  Similarity=0.195  Sum_probs=155.4

Q ss_pred             ccEEeCCCCCCcc--ccchhhh-------cccccccccccCCccc-cCCccc--ccccccceeeccccceeeceEEEeec
Q 044279            4 LAVLDLSYNFDLV--ELPEAIG-------KLINLCHLNLSNTKIR-ELPAGI--KYLKNLKILRLDVFSWFSTELVALHH   71 (305)
Q Consensus         4 L~~L~l~~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~~l~~~   71 (305)
                      |++|++++| .+.  .+|..+.       ++++|++|++++|++. .+|..+  +.+++|++|++++|.+.         
T Consensus        65 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------  134 (312)
T 1wwl_A           65 IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA---------  134 (312)
T ss_dssp             HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---------
T ss_pred             Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---------
Confidence            677888888 664  4566555       7899999999999887 677776  88999999999999853         


Q ss_pred             cccccccccccccCc-----cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccc---c-----ccCCCcc
Q 044279           72 NFCCATTVLAGLESL-----ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSL---D-----FRMDHLE  138 (305)
Q Consensus        72 ~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~-----~~~~~L~  138 (305)
                            ..+..+..+     ++|+.|+++++.........+...    ++|+.|+++.|.+...   +     ..+++|+
T Consensus       135 ------~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~  204 (312)
T 1wwl_A          135 ------TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF----PALSTLDLSDNPELGERGLISALCPLKFPTLQ  204 (312)
T ss_dssp             ------SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC----SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred             ------chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC----CCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence                  225555555     889999998842222222233333    3499999996654321   1     5789999


Q ss_pred             EEEEeceecceec---ccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEeccccccccccccCCCCC
Q 044279          139 TLEIVDCSLESIN---IYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGT  212 (305)
Q Consensus       139 ~L~l~~~~l~~~~---~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  212 (305)
                      .|++++|.++.++   ...     ...+++|++|++++| .++..   +.+..+++|++|++++|. ++.++.       
T Consensus       205 ~L~L~~N~l~~~~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~-------  270 (312)
T 1wwl_A          205 VLALRNAGMETPSGVCSAL-----AAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK-------  270 (312)
T ss_dssp             EEECTTSCCCCHHHHHHHH-----HHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS-------
T ss_pred             EEECCCCcCcchHHHHHHH-----HhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh-------
Confidence            9999999977443   222     246799999999999 66653   345567999999999976 445544       


Q ss_pred             ccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279          213 SEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       213 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  258 (305)
                           .+.  ++|++|+++++ .++.++. ...+++|++|++++++
T Consensus       271 -----~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          271 -----GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             -----SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             -----hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence                 333  89999999999 7888866 7789999999998874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=6.6e-18  Score=143.13  Aligned_cols=194  Identities=19%  Similarity=0.143  Sum_probs=113.3

Q ss_pred             ccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccc
Q 044279           25 LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAF  104 (305)
Q Consensus        25 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  104 (305)
                      +.++..+++..+.+..+ .....+++|++|++.++.+.                ....+..+++|+.|++++  +....+
T Consensus        18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~----------------~~~~l~~l~~L~~L~l~~--n~l~~~   78 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIK----------------SVQGIQYLPNVRYLALGG--NKLHDI   78 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCC----------------CCTTGGGCTTCCEEECTT--SCCCCC
T ss_pred             HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCcc----------------cccccccCCCCcEEECCC--CCCCCc
Confidence            34455555655555443 23556677777777776531                234466677777777766  333333


Q ss_pred             cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279          105 CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       105 ~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      +.+...    ++|++|+++.+.++.++    ..+++|+.|++++|.++.++....     ..+++|++|++++| .++.+
T Consensus        79 ~~l~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~  148 (272)
T 3rfs_A           79 SALKEL----TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-----DKLTNLTYLNLAHN-QLQSL  148 (272)
T ss_dssp             GGGTTC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCC
T ss_pred             hhhcCC----CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh-----ccCCCCCEEECCCC-ccCcc
Confidence            333322    23777777755555444    456677777777777666554432     55677777777777 55555


Q ss_pred             Cc--CCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCC
Q 044279          181 KW--IRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDC  257 (305)
Q Consensus       181 ~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c  257 (305)
                      +.  +..+++|++|++++|. +..+++           ..++.+++|++|++++| .++.++.. ...+++|+.|++++|
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQ-LQSLPE-----------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CHHHhccCccCCEEECCCCC-cCccCH-----------HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence            42  4566777777777764 333332           23456677777777776 55554443 345677777777666


Q ss_pred             CCC
Q 044279          258 PGL  260 (305)
Q Consensus       258 ~~l  260 (305)
                      +..
T Consensus       216 ~~~  218 (272)
T 3rfs_A          216 PWD  218 (272)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=9.8e-17  Score=135.72  Aligned_cols=176  Identities=23%  Similarity=0.252  Sum_probs=125.9

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++|++++| .++.++. .+.++++|++|++++|++..+|.. +..+++|++|++++|.+.              ...
T Consensus        37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~--------------~~~  101 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ--------------ALP  101 (270)
T ss_dssp             TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC--------------CCC
T ss_pred             CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC--------------cCC
Confidence            46899999999 8888875 689999999999999999988876 588999999999999852              222


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGR  159 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  159 (305)
                      +..+..+++|+.|++++  +....+.   ...                   ...+++|+.|++++|.++.++....    
T Consensus       102 ~~~~~~l~~L~~L~l~~--n~l~~~~---~~~-------------------~~~l~~L~~L~Ls~n~l~~~~~~~~----  153 (270)
T 2o6q_A          102 IGVFDQLVNLAELRLDR--NQLKSLP---PRV-------------------FDSLTKLTYLSLGYNELQSLPKGVF----  153 (270)
T ss_dssp             TTTTTTCSSCCEEECCS--SCCCCCC---TTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT----
T ss_pred             HhHcccccCCCEEECCC--CccCeeC---HHH-------------------hCcCcCCCEEECCCCcCCccCHhHc----
Confidence            34567888999998887  3222111   000                   0346677777777777766665432    


Q ss_pred             ccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          160 TYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       160 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                       ..+++|++|++++| .++.++  .+..+++|++|++++|. +..++.           ..+..+++|+.|++++++
T Consensus       154 -~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          154 -DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE-----------GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             -TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred             -cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCH-----------HHhccccCCCEEEecCCC
Confidence             56777888888877 566554  35667788888888764 444443           245567788888887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=8.1e-17  Score=137.78  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=102.7

Q ss_pred             hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279           23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH  102 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  102 (305)
                      ..+.+|++|++++|.+..++ .+..+++|++|++++|.+.               ..+. +..+++|+.|++++  +...
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~---------------~~~~-l~~l~~L~~L~l~~--n~l~  103 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---------------DIKP-LANLKNLGWLFLDE--NKVK  103 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------CCGG-GTTCTTCCEEECCS--SCCC
T ss_pred             hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC---------------CCcc-cccCCCCCEEECCC--CcCC
Confidence            45566666666666666554 3566666666666666532               2222 55666666666665  3333


Q ss_pred             cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279          103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      .++.+....    +|+.|+++.+.+..++  ..+++|+.|++++|.+++++ .      +..+++|+.|++++| .++++
T Consensus       104 ~~~~l~~l~----~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~------l~~l~~L~~L~L~~N-~l~~~  171 (291)
T 1h6t_A          104 DLSSLKDLK----KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-V------LSRLTKLDTLSLEDN-QISDI  171 (291)
T ss_dssp             CGGGGTTCT----TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSS-CCCCC
T ss_pred             CChhhccCC----CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-h------hccCCCCCEEEccCC-ccccc
Confidence            333332222    2666666655555444  56777888888887766652 1      256788888888887 66666


Q ss_pred             CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                      +.+..+++|++|++++|. +..++             .+..+++|+.|+++++
T Consensus       172 ~~l~~l~~L~~L~L~~N~-i~~l~-------------~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          172 VPLAGLTKLQNLYLSKNH-ISDLR-------------ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCBCG-------------GGTTCTTCSEEEEEEE
T ss_pred             hhhcCCCccCEEECCCCc-CCCCh-------------hhccCCCCCEEECcCC
Confidence            557778888888888865 33332             3567788888888887

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=4.4e-16  Score=146.69  Aligned_cols=90  Identities=23%  Similarity=0.278  Sum_probs=52.3

Q ss_pred             cccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeec--eEE----------E
Q 044279            3 ALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFST--ELV----------A   68 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~--~~~----------l   68 (305)
                      ++++||+++| .++.+|+ .+.++++|++|++++|+++.+|.+ |.++++|++|++++|++..+  +.+          +
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4666777776 6666653 466677777777777666666543 66666777777766654322  000          1


Q ss_pred             eecccccccccc-ccccCccCccceeEEE
Q 044279           69 LHHNFCCATTVL-AGLESLENIHDISITL   96 (305)
Q Consensus        69 ~~~~~~~~~~~~-~~l~~l~~L~~L~l~~   96 (305)
                      .++.   ...++ ..++.+++|+.|++++
T Consensus       132 s~N~---l~~l~~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          132 VETN---LASLENFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             TTSC---CCCSTTCCCTTCTTCCEEECCS
T ss_pred             CCCc---CCCCChhhhhcCcccCeecccc
Confidence            1111   12222 3467777777777777

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=2.3e-16  Score=138.51  Aligned_cols=218  Identities=14%  Similarity=0.112  Sum_probs=96.9

Q ss_pred             EEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeec---eEE-----------Eee
Q 044279            6 VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFST---ELV-----------ALH   70 (305)
Q Consensus         6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~---~~~-----------l~~   70 (305)
                      .++.+++ .++++|..+  ..++++|++++|+++.+|.+ |.++++|++|++++|.+...   +.+           +.+
T Consensus        13 ~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3444444 455555433  23455555555555555543 45555555555555543110   000           000


Q ss_pred             ccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc----c-cCCCccEEEEec
Q 044279           71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD----F-RMDHLETLEIVD  144 (305)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~----~-~~~~L~~L~l~~  144 (305)
                      +.+  ....+..+..+++|+.|++..  +....+.......  ..++..+++. ++.+..++    . ....++.|++++
T Consensus        90 N~l--~~l~~~~f~~l~~L~~L~l~~--n~l~~~~~~~~~~--~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           90 NNL--LYINPEAFQNLPNLQYLLISN--TGIKHLPDVHKIH--SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             TTC--CEECTTSBCCCTTCCEEEEEE--ECCSSCCCCTTCC--BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             Ccc--cccCchhhhhccccccccccc--cccccCCchhhcc--cchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            000  111123445555666666555  2222221111100  0124445554 44444433    1 122355555655


Q ss_pred             eecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcccccccccc
Q 044279          145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFL  222 (305)
Q Consensus       145 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (305)
                      |.+++++...+      ...+|++|++.++..++.++  .+..+++|+.|++++|. ++.++.              +.+
T Consensus       164 N~i~~i~~~~f------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--------------~~~  222 (350)
T 4ay9_X          164 NGIQEIHNSAF------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--------------YGL  222 (350)
T ss_dssp             SCCCEECTTSS------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--------------SSC
T ss_pred             ccccCCChhhc------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--------------hhh
Confidence            55555554331      23455556655544555554  24455566666666543 333333              224


Q ss_pred             CccceeeccCcccCceecCCCCCCCCCceEEe
Q 044279          223 SNLMVIDLQHLPSLTSICCRAVPLPSLKTISV  254 (305)
Q Consensus       223 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  254 (305)
                      .+|+.|.+.++..++.+|. ...+++|+.+++
T Consensus       223 ~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l  253 (350)
T 4ay9_X          223 ENLKKLRARSTYNLKKLPT-LEKLVALMEASL  253 (350)
T ss_dssp             TTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred             ccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence            4455555555555555553 344555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=3.1e-18  Score=149.39  Aligned_cols=218  Identities=18%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             ccEEeCCCCCCccccchhhhcc--cccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKL--INLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++.++++++ .+.  +..+..+  .+++.|+++++.+...+..+..+++|++|++++|.+.             ...++.
T Consensus        49 ~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-------------~~~~~~  112 (336)
T 2ast_B           49 WQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-------------VSTLHG  112 (336)
T ss_dssp             SSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-------------HHHHHH
T ss_pred             heeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-------------HHHHHH
Confidence            455666665 333  3334444  5666666666665544444555666666666666532             122444


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcc--cc---ccCCCccEEEEece-ecceec-cc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSS--LD---FRMDHLETLEIVDC-SLESIN-IY  153 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~--~~---~~~~~L~~L~l~~~-~l~~~~-~~  153 (305)
                      .+..+++|+.|+++++.........+..    .++|++|+++ +..++.  ++   ..+++|+.|++++| .+++.. ..
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            5556666666666553211111222222    2336666666 324442  22   45566666666666 444321 11


Q ss_pred             ccCCCcccCCC-ccceEeeeCCC-CCcc--CC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279          154 FGDQGRTYCFR-NLRHLSVKDCH-FMTD--LK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI  228 (305)
Q Consensus       154 ~~~~~~~~~~~-~L~~L~L~~~~-~l~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  228 (305)
                      .     ...++ +|++|++++|. .+++  ++ .+..+++|++|++++|..+.....           ..+..+++|++|
T Consensus       189 ~-----~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~l~~l~~L~~L  252 (336)
T 2ast_B          189 A-----VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFQLNYLQHL  252 (336)
T ss_dssp             H-----HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------GGGGGCTTCCEE
T ss_pred             H-----HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-----------HHHhCCCCCCEe
Confidence            1     13455 66666666663 2221  21 233456666666666553322111           134555666666


Q ss_pred             eccCcccCceec-CCCCCCCCCceEEeeCC
Q 044279          229 DLQHLPSLTSIC-CRAVPLPSLKTISVYDC  257 (305)
Q Consensus       229 ~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c  257 (305)
                      ++++|..+.... .....+++|+.|++++|
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            666664332111 11234566666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=2.9e-16  Score=137.86  Aligned_cols=206  Identities=15%  Similarity=0.053  Sum_probs=133.8

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccc-cCCcc-ccccccccee-eccccceeec--eE---------
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIR-ELPAG-IKYLKNLKIL-RLDVFSWFST--EL---------   66 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L-~l~~~~~~~~--~~---------   66 (305)
                      +++++|++++| .++.+|. .+.++++|++|++++|++. .+|.. +.++++|+++ .+..|.+..+  +.         
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            46888999998 8888886 4788899999999888753 45443 4556655543 3333433222  00         


Q ss_pred             E-EeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEE
Q 044279           67 V-ALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEI  142 (305)
Q Consensus        67 ~-l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l  142 (305)
                      + +.++.++  ............+..+++..+ .....++. .........++.|+++.|.++.++   ....+|+.+.+
T Consensus       109 L~l~~n~l~--~~~~~~~~~~~~l~~l~l~~~-~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          109 LLISNTGIK--HLPDVHKIHSLQKVLLDIQDN-INIHTIER-NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             EEEEEECCS--SCCCCTTCCBSSCEEEEEESC-TTCCEECT-TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             ccccccccc--cCCchhhcccchhhhhhhccc-cccccccc-cchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence            0 2222221  111122333444555655441 11111111 011223345888999988888877   45567999999


Q ss_pred             ecee-cceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccc
Q 044279          143 VDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF  221 (305)
Q Consensus       143 ~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (305)
                      .+++ ++.++...+     ..+++|+.|++++| .++.+|. ..+.+|+.|.+.++..++.+|.             +..
T Consensus       185 ~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~-------------l~~  244 (350)
T 4ay9_X          185 SDNNNLEELPNDVF-----HGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLPT-------------LEK  244 (350)
T ss_dssp             TTCTTCCCCCTTTT-----TTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCCC-------------TTT
T ss_pred             ccCCcccCCCHHHh-----ccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCCC-------------chh
Confidence            8766 899987653     78899999999999 8888874 4478899999989888777764             567


Q ss_pred             cCccceeeccC
Q 044279          222 LSNLMVIDLQH  232 (305)
Q Consensus       222 ~~~L~~L~l~~  232 (305)
                      +++|+.+++.+
T Consensus       245 l~~L~~l~l~~  255 (350)
T 4ay9_X          245 LVALMEASLTY  255 (350)
T ss_dssp             CCSCCEEECSC
T ss_pred             CcChhhCcCCC
Confidence            89999999976

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=6.9e-18  Score=147.13  Aligned_cols=227  Identities=15%  Similarity=0.169  Sum_probs=160.5

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++|++++| .++..+..+.++++|++|++++|.+.  .+|..+..+++|++|++++|.+              ....
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l--------------~~~~  134 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--------------SDPI  134 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC--------------CHHH
T ss_pred             ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc--------------CHHH
Confidence            57899999999 77777666788999999999999876  2777889999999999999975              3456


Q ss_pred             cccccCccCccceeEEEee-cCcccccccccCCCccccceEEEEEcC-CCccc--c---ccCC-CccEEEEecee--cc-
Q 044279           80 LAGLESLENIHDISITLCF-VDTHAFCRFQSSPKLQSCVKRLTVASP-WFSSL--D---FRMD-HLETLEIVDCS--LE-  148 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~--~---~~~~-~L~~L~l~~~~--l~-  148 (305)
                      +..+..+++|+.|++++|. .....+...   ....++|++|+++.+ .++..  +   ..++ +|+.|++++|.  ++ 
T Consensus       135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~  211 (336)
T 2ast_B          135 VNTLAKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK  211 (336)
T ss_dssp             HHHHTTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred             HHHHhcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence            6778889999999998841 111112221   112345999999944 77653  3   7788 99999999994  33 


Q ss_pred             -eecccccCCCcccCCCccceEeeeCCCCCcc--CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcc
Q 044279          149 -SINIYFGDQGRTYCFRNLRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNL  225 (305)
Q Consensus       149 -~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  225 (305)
                       .++..      ...+++|++|++++|..+++  ++.+..+++|++|++++|..+.....           ..++.+++|
T Consensus       212 ~~l~~~------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~~~~L  274 (336)
T 2ast_B          212 SDLSTL------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIPTL  274 (336)
T ss_dssp             HHHHHH------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCTTC
T ss_pred             HHHHHH------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----------HHHhcCCCC
Confidence             33322      25789999999999954554  45677889999999999974322111           246789999


Q ss_pred             ceeeccCcccCceecCCCCCC-CCCceEEeeCCCCCCCC-CCCCc
Q 044279          226 MVIDLQHLPSLTSICCRAVPL-PSLKTISVYDCPGLRKL-PLNSG  268 (305)
Q Consensus       226 ~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~~-~~~~~  268 (305)
                      +.|++++|  +..-.  ...+ .+++.|+++ |+.+... |..+.
T Consensus       275 ~~L~l~~~--i~~~~--~~~l~~~l~~L~l~-~n~l~~~~~~~~~  314 (336)
T 2ast_B          275 KTLQVFGI--VPDGT--LQLLKEALPHLQIN-CSHFTTIARPTIG  314 (336)
T ss_dssp             CEEECTTS--SCTTC--HHHHHHHSTTSEES-CCCSCCTTCSSCS
T ss_pred             CEEeccCc--cCHHH--HHHHHhhCcceEEe-cccCccccCCccc
Confidence            99999999  22110  1112 236666685 4455543 44433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=1.1e-18  Score=155.43  Aligned_cols=237  Identities=15%  Similarity=0.119  Sum_probs=157.7

Q ss_pred             CCcccEEeCCCCCCccc-----cchhhhcccccccccccCCccc----cCCccc-------ccccccceeeccccceeec
Q 044279            1 MHALAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKIR----ELPAGI-------KYLKNLKILRLDVFSWFST   64 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~~-------~~l~~L~~L~l~~~~~~~~   64 (305)
                      +++|++|++++| .++.     ++..+..+++|++|++++|.+.    .+|..+       ..+++|++|++++|.+.. 
T Consensus        31 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-  108 (386)
T 2ca6_A           31 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-  108 (386)
T ss_dssp             CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-
T ss_pred             CCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH-
Confidence            478999999999 6664     3344678999999999997554    344444       688999999999998531 


Q ss_pred             eEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCcc---------ccceEEEEEcCCCccc--c--
Q 044279           65 ELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQ---------SCVKRLTVASPWFSSL--D--  131 (305)
Q Consensus        65 ~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~~~~~~~--~--  131 (305)
                               .....++..+..+++|+.|++++|.........+.......         ++|++|+++.|.++..  +  
T Consensus       109 ---------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          109 ---------TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  179 (386)
T ss_dssp             ---------TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             ---------HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence                     00113566788899999999988422111111222211111         4599999996666532  2  


Q ss_pred             ----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCc-----cCC-cCCCCCCCCEEEEecccccc
Q 044279          132 ----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMT-----DLK-WIRCAPNLQFLYVSDCQVLS  201 (305)
Q Consensus       132 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~~~-~~~~~~~L~~L~l~~~~~~~  201 (305)
                          ..+++|+.|++++|.+++.+........+..+++|+.|+|++| .++     .++ .+..+++|++|++++|....
T Consensus       180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence                4678999999999987643211100001367899999999999 563     232 46778999999999987432


Q ss_pred             ccccccCCCCCccccccc--cccCccceeeccCcccCce-----ecCCC-CCCCCCceEEeeCCC
Q 044279          202 EIIGTYESPGTSEIEESH--HFLSNLMVIDLQHLPSLTS-----ICCRA-VPLPSLKTISVYDCP  258 (305)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~  258 (305)
                      ....        .++..+  +.+++|++|+|++| .++.     ++... ..+++|+.|++++|+
T Consensus       259 ~~~~--------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          259 RGAA--------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHH--------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhHH--------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            2110        001133  34899999999999 5655     55544 358999999998884

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=8.1e-17  Score=138.99  Aligned_cols=219  Identities=15%  Similarity=0.115  Sum_probs=143.6

Q ss_pred             cccEEeCCCCCCccc--cch--hhhcccccccccccCCccc-cCCccc--ccccccceeeccccceeeceEEEeeccccc
Q 044279            3 ALAVLDLSYNFDLVE--LPE--AIGKLINLCHLNLSNTKIR-ELPAGI--KYLKNLKILRLDVFSWFSTELVALHHNFCC   75 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~--lp~--~~~~l~~L~~L~l~~~~l~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~   75 (305)
                      .++.+.+.++ .+..  +..  ....+.+|++|++++|.+. ..|..+  +.+++|++|++++|.+..            
T Consensus        65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------------  131 (310)
T 4glp_A           65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT------------  131 (310)
T ss_dssp             CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS------------
T ss_pred             ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc------------
Confidence            3567777777 4432  221  1234567999999999887 556666  889999999999998531            


Q ss_pred             ccc-c-cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcc---cc-----ccCCCccEEEEece
Q 044279           76 ATT-V-LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSS---LD-----FRMDHLETLEIVDC  145 (305)
Q Consensus        76 ~~~-~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~-----~~~~~L~~L~l~~~  145 (305)
                      ... . ...+..+++|+.|+++.|.........+...    ++|++|+++.|.+..   ++     ..+++|+.|++++|
T Consensus       132 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N  207 (310)
T 4glp_A          132 GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF----PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT  207 (310)
T ss_dssp             TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC----TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred             hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC----CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence            100 1 1234578899999998832222221222222    348888888555432   11     46788999999998


Q ss_pred             ecceecccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCC---CCCCEEEEeccccccccccccCCCCCcccccccc
Q 044279          146 SLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCA---PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH  220 (305)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (305)
                      .++.++.....  ....+++|++|++++| .+++. | .+..+   ++|++|++++|. ++.++.            .+ 
T Consensus       208 ~l~~l~~~~~~--l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~------------~~-  270 (310)
T 4glp_A          208 GMETPTGVCAA--LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK------------GL-  270 (310)
T ss_dssp             CCCCHHHHHHH--HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS------------CC-
T ss_pred             CCCchHHHHHH--HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCchhh------------hh-
Confidence            87655532100  0146788999999998 55554 2 34444   789999999866 445543            22 


Q ss_pred             ccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279          221 FLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  258 (305)
                       +++|+.|++++| .++.++. ...+++|+.|++++++
T Consensus       271 -~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          271 -PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             -CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             -cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence             379999999998 7777654 5678899999998774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=2.7e-16  Score=147.16  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=83.9

Q ss_pred             hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279           23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH  102 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  102 (305)
                      ..+.+|+.|++++|.+..+| .+..+++|++|++++|.+.               .++. +..+++|+.|+++.  +...
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~---------------~~~~-l~~l~~L~~L~Ls~--N~l~  100 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---------------DIKP-LTNLKNLGWLFLDE--NKIK  100 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC---------------CCGG-GGGCTTCCEEECCS--SCCC
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC---------------CChh-hccCCCCCEEECcC--CCCC
Confidence            45555555555555555554 3555555555555555432               1111 55555555555555  3322


Q ss_pred             cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279          103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      .++.+..+    ++|+.|+++.+.+..++  ..+++|+.|++++|.++.++ .      +..+++|+.|+|++| .++++
T Consensus       101 ~l~~l~~l----~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~------l~~l~~L~~L~Ls~N-~l~~~  168 (605)
T 1m9s_A          101 DLSSLKDL----KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-V------LSRLTKLDTLSLEDN-QISDI  168 (605)
T ss_dssp             CCTTSTTC----TTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-G------GGSCTTCSEEECCSS-CCCCC
T ss_pred             CChhhccC----CCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCch-h------hcccCCCCEEECcCC-cCCCc
Confidence            22222222    22555555544444444  45556666666666555442 1      145566666666665 44444


Q ss_pred             CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                      +.+..+++|+.|+|++|. +..++             .+..+++|+.|+|++|
T Consensus       169 ~~l~~l~~L~~L~Ls~N~-i~~l~-------------~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          169 VPLAGLTKLQNLYLSKNH-ISDLR-------------ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCBCG-------------GGTTCTTCSEEECCSE
T ss_pred             hhhccCCCCCEEECcCCC-CCCCh-------------HHccCCCCCEEEccCC
Confidence            445556666666666653 22221             2445566666666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.65  E-value=1.2e-15  Score=127.58  Aligned_cols=56  Identities=23%  Similarity=0.258  Sum_probs=35.5

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccce
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~   61 (305)
                      ..++++++++ .++.+|..+.  .+++.|++++|++..++. .++.+++|++|++++|.+
T Consensus        15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   71 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL   71 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence            3456677766 6666665443  466777777776665544 366677777777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=3.7e-16  Score=133.62  Aligned_cols=164  Identities=20%  Similarity=0.261  Sum_probs=90.0

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++|++|++++| .++.++. +..+++|++|++++|++..++. +..+++|++|++++|.+.               . ++
T Consensus        46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~---------------~-~~  106 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK---------------D-LS  106 (291)
T ss_dssp             HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC---------------C-GG
T ss_pred             CcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC---------------C-Ch
Confidence            34566666666 5555543 5556666666666666665544 566666666666666531               1 23


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGR  159 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~  159 (305)
                      .+..+++|+.|++++  +....++.+...    ++|+.|+++.+.++.++  ..+++|+.|++++|.+++++. +     
T Consensus       107 ~l~~l~~L~~L~L~~--n~i~~~~~l~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l-----  174 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEH--NGISDINGLVHL----PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-L-----  174 (291)
T ss_dssp             GGTTCTTCCEEECTT--SCCCCCGGGGGC----TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G-----
T ss_pred             hhccCCCCCEEECCC--CcCCCChhhcCC----CCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-h-----
Confidence            355566666666655  333333333222    22666666644444444  455666666666666555443 1     


Q ss_pred             ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccc
Q 044279          160 TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       160 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~  198 (305)
                       ..+++|+.|++++| .+++++.+..+++|+.|++++|.
T Consensus       175 -~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          175 -AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             -cCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence             44566666666666 55555555566666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=3.1e-16  Score=132.19  Aligned_cols=161  Identities=19%  Similarity=0.286  Sum_probs=96.5

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      +..++++++ .+++++ .+..+++|++|++++|++..+| .+..+++|++|++++|.+.               ..+. +
T Consensus        21 l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~---------------~~~~-l   81 (263)
T 1xeu_A           21 AVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS---------------DLSP-L   81 (263)
T ss_dssp             HHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------CCGG-G
T ss_pred             HHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC---------------CChh-h
Confidence            445566666 666666 4677778888888888777776 6777788888888877642               2233 6


Q ss_pred             cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCccc
Q 044279           84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTY  161 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  161 (305)
                      ..+++|+.|++++  +....++.+..     .+|+.|+++.+.++.++  ..+++|+.|++++|.+++++ .      ..
T Consensus        82 ~~l~~L~~L~L~~--N~l~~l~~~~~-----~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~------l~  147 (263)
T 1xeu_A           82 KDLTKLEELSVNR--NRLKNLNGIPS-----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-M------LG  147 (263)
T ss_dssp             TTCSSCCEEECCS--SCCSCCTTCCC-----SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-G------GG
T ss_pred             ccCCCCCEEECCC--CccCCcCcccc-----CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-H------Hc
Confidence            7777777777777  33333322221     33666666644454444  45556666666665555543 1      14


Q ss_pred             CCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccc
Q 044279          162 CFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~  198 (305)
                      .+++|+.|++++| .+++++.+..+++|+.|++++|.
T Consensus       148 ~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          148 FLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             GCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             cCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence            4556666666665 44444555555666666666644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=8.1e-16  Score=143.98  Aligned_cols=167  Identities=20%  Similarity=0.275  Sum_probs=133.3

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|+.|++++| .+..+| .+..+++|+.|++++|.+..++. +..+++|++|++++|.+.               . +
T Consensus        42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~---------------~-l  102 (605)
T 1m9s_A           42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK---------------D-L  102 (605)
T ss_dssp             HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC---------------C-C
T ss_pred             CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC---------------C-C
Confidence            367889999998 788876 48889999999999999888875 889999999999998752               2 3


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      +.+..+++|+.|+++.  +....++.+..+    ++|+.|+++.|.+..++  ..+++|+.|++++|.++.++. +    
T Consensus       103 ~~l~~l~~L~~L~Ls~--N~l~~l~~l~~l----~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l----  171 (605)
T 1m9s_A          103 SSLKDLKKLKSLSLEH--NGISDINGLVHL----PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-L----  171 (605)
T ss_dssp             TTSTTCTTCCEEECTT--SCCCCCGGGGGC----TTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-G----
T ss_pred             hhhccCCCCCEEEecC--CCCCCCccccCC----CccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-h----
Confidence            4788889999999988  444444444443    34999999966666666  778899999999998777654 2    


Q ss_pred             cccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccc
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~  200 (305)
                        ..+++|+.|+|++| .+++++.+..+++|+.|++++|...
T Consensus       172 --~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          172 --AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             --TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred             --ccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcCc
Confidence              67899999999998 7788888888999999999997754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.62  E-value=3.2e-15  Score=138.64  Aligned_cols=175  Identities=16%  Similarity=0.191  Sum_probs=110.5

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      +|++|++++| .++.+|..+  +++|++|++++|++..+|   +.+++|++|++++|.+.               .++. 
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~---------------~ip~-  117 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLS---------------TLPE-  117 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS---------------CCCC-
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC---------------Ccch-
Confidence            6778888887 677777655  367888888888777777   44678888888887642               2333 


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC  162 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  162 (305)
                      +..  +|+.|+++.  +....++.      ..++|+.|+++.|.++.++..+++|+.|++++|.++.++. +      . 
T Consensus       118 l~~--~L~~L~Ls~--N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l------~-  179 (571)
T 3cvr_A          118 LPA--SLKHLDVDN--NQLTMLPE------LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-L------P-  179 (571)
T ss_dssp             CCT--TCCEEECCS--SCCSCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C------C-
T ss_pred             hhc--CCCEEECCC--CcCCCCCC------cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-h------h-
Confidence            433  777777777  33333322      2344777777766666655556677777777777666664 2      2 


Q ss_pred             CCccceEeeeCCCCCccCCcCCCCCCC-------CEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          163 FRNLRHLSVKDCHFMTDLKWIRCAPNL-------QFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                       ++|+.|+|++| .++.+|.+..  +|       +.|++++|. +..++.            .+..+++|+.|+|++|+
T Consensus       180 -~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~------------~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          180 -ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIPE------------NILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCCG------------GGGGSCTTEEEECCSSS
T ss_pred             -CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecCH------------HHhcCCCCCEEEeeCCc
Confidence             66777777777 5666554322  55       777777754 444443            45557777777777763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=1e-15  Score=123.30  Aligned_cols=150  Identities=17%  Similarity=0.200  Sum_probs=102.6

Q ss_pred             hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279           22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT  101 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  101 (305)
                      ...+++|++|++++|.+..+| ++..+++|++|++++|.+                ..+..+..+++|+.|++++  +..
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~----------------~~~~~l~~l~~L~~L~l~~--n~l  100 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA----------------TNYNPISGLSNLERLRIMG--KDV  100 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC----------------SCCGGGTTCTTCCEEEEEC--TTC
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC----------------CcchhhhcCCCCCEEEeEC--Ccc
Confidence            478889999999999999888 789999999999999853                2345788899999999988  332


Q ss_pred             cc--ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc
Q 044279          102 HA--FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD  179 (305)
Q Consensus       102 ~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  179 (305)
                      ..  ...+                        ..+++|+.|++++|.+++.....     +..+++|++|++++|..+++
T Consensus       101 ~~~~~~~l------------------------~~l~~L~~L~Ls~n~i~~~~~~~-----l~~l~~L~~L~L~~n~~i~~  151 (197)
T 4ezg_A          101 TSDKIPNL------------------------SGLTSLTLLDISHSAHDDSILTK-----INTLPKVNSIDLSYNGAITD  151 (197)
T ss_dssp             BGGGSCCC------------------------TTCTTCCEEECCSSBCBGGGHHH-----HTTCSSCCEEECCSCTBCCC
T ss_pred             CcccChhh------------------------cCCCCCCEEEecCCccCcHhHHH-----HhhCCCCCEEEccCCCCccc
Confidence            21  2111                        23566777777776655433222     14567777777777743666


Q ss_pred             CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          180 LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       180 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                      ++.+..+++|+.|++++|.. ..++             .+..+++|++|+++++
T Consensus       152 ~~~l~~l~~L~~L~l~~n~i-~~~~-------------~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          152 IMPLKTLPELKSLNIQFDGV-HDYR-------------GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CGGGGGCSSCCEEECTTBCC-CCCT-------------TGGGCSSCCEEEECBC
T ss_pred             cHhhcCCCCCCEEECCCCCC-cChH-------------HhccCCCCCEEEeeCc
Confidence            66666677777777777553 2221             3456677777777776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=2.4e-17  Score=153.40  Aligned_cols=203  Identities=17%  Similarity=0.120  Sum_probs=121.0

Q ss_pred             hcccccccccccCCccccCCcccccccccceeeccccceeec-eEEEeeccccccccccccccCccCcccee-EEEeecC
Q 044279           23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFST-ELVALHHNFCCATTVLAGLESLENIHDIS-ITLCFVD  100 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~  100 (305)
                      ..+++|+.|++++|+++.+|..++.+++|++|+++++..... -.++...  ......+..+..+++|+.|+ +..  +.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~--~~~~~~~~~l~~l~~L~~L~~l~~--n~  421 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL--DPLLYEKETLQYFSTLKAVDPMRA--AY  421 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--CTGGGHHHHHHHHHHHHHHCGGGH--HH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhc--ccccCCHHHHHHHHhcccCcchhh--cc
Confidence            445666666666666666666666666676666655421000 0000000  00223334455555665555 222  11


Q ss_pred             cc----------cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccce
Q 044279          101 TH----------AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRH  168 (305)
Q Consensus       101 ~~----------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~  168 (305)
                      ..          .+..+..     ..|+.|+++.|.++.++  ..+++|+.|++++|.++.+|..+      ..+++|+.
T Consensus       422 ~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~------~~l~~L~~  490 (567)
T 1dce_A          422 LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL------AALRCLEV  490 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG------GGCTTCCE
T ss_pred             cchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhh------hcCCCCCE
Confidence            00          1111111     12777777766666666  66778888888888877777544      67888888


Q ss_pred             EeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCC----
Q 044279          169 LSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV----  244 (305)
Q Consensus       169 L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----  244 (305)
                      |+|++| .++.+|.+..+++|+.|++++|. +..+.          .+..++.+++|+.|++++| .++.++....    
T Consensus       491 L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~----------~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~  557 (567)
T 1dce_A          491 LQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSA----------AIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAE  557 (567)
T ss_dssp             EECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSS----------TTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHH
T ss_pred             EECCCC-CCCCCcccCCCCCCcEEECCCCC-CCCCC----------CcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHH
Confidence            888888 77777777788888888888865 33331          0136778888888888888 5665544332    


Q ss_pred             CCCCCceEE
Q 044279          245 PLPSLKTIS  253 (305)
Q Consensus       245 ~~~~L~~L~  253 (305)
                      .+|+|+.|+
T Consensus       558 ~lp~L~~L~  566 (567)
T 1dce_A          558 MLPSVSSIL  566 (567)
T ss_dssp             HCTTCSEEE
T ss_pred             HCcccCccC
Confidence            367777775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.9e-15  Score=125.36  Aligned_cols=195  Identities=14%  Similarity=0.133  Sum_probs=150.7

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCc-cccCCc-ccccccccceeeccc-cceeeceEEEeeccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTK-IRELPA-GIKYLKNLKILRLDV-FSWFSTELVALHHNFCCAT   77 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-~~~~~~~~~l~~~~~~~~~   77 (305)
                      ++|++|++++| .++.+|. .+.++++|++|++++|+ +..++. .+..+++|++|++++ |.+.              .
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--------------~   95 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--------------Y   95 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--------------E
T ss_pred             CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--------------E
Confidence            46899999999 8898876 68999999999999996 888876 588999999999998 7642              2


Q ss_pred             cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcC-CCcccc----ccCCCcc-EEEEeceecceec
Q 044279           78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASP-WFSSLD----FRMDHLE-TLEIVDCSLESIN  151 (305)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~L~-~L~l~~~~l~~~~  151 (305)
                      ..+..+..+++|+.|++++  +....++.+.....+.. |+.|+++.+ .++.++    ..+++|+ .|++++|.++.++
T Consensus        96 i~~~~f~~l~~L~~L~l~~--n~l~~lp~~~~l~~L~~-L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFN--TGLKMFPDLTKVYSTDI-FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEE--ECCCSCCCCTTCCBCCS-EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             cCHHHhCCCCCCCEEeCCC--CCCcccccccccccccc-ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence            2235678899999999999  44444544444433222 449999966 777766    5688999 9999999988888


Q ss_pred             ccccCCCcccCCCccceEeeeCCCCCccCC--cCCCC-CCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279          152 IYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCA-PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI  228 (305)
Q Consensus       152 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  228 (305)
                      ...+     .. ++|++|++++|..++.++  .+..+ ++|+.|++++|. +..++.              ..+++|+.|
T Consensus       173 ~~~~-----~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~--------------~~~~~L~~L  231 (239)
T 2xwt_C          173 GYAF-----NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPS--------------KGLEHLKEL  231 (239)
T ss_dssp             TTTT-----TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCC--------------TTCTTCSEE
T ss_pred             Hhhc-----CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCCh--------------hHhccCcee
Confidence            6553     33 789999999995477764  46778 999999999965 555554              268999999


Q ss_pred             eccCccc
Q 044279          229 DLQHLPS  235 (305)
Q Consensus       229 ~l~~~~~  235 (305)
                      ++.++..
T Consensus       232 ~l~~~~~  238 (239)
T 2xwt_C          232 IARNTWT  238 (239)
T ss_dssp             ECTTC--
T ss_pred             eccCccC
Confidence            9988754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=1.1e-14  Score=121.82  Aligned_cols=174  Identities=18%  Similarity=0.183  Sum_probs=119.8

Q ss_pred             cccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccc
Q 044279           26 INLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFC  105 (305)
Q Consensus        26 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  105 (305)
                      ...++++++++.+..+|..+.  +++++|++++|.+.              ...+..+..+++|+.|++++  +....+ 
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~--n~l~~~-   74 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA--------------TLSDATFRGLTKLTWLNLDY--NQLQTL-   74 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC--------------CCCTTTTTTCTTCCEEECTT--SCCCCC-
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC--------------ccCHhHhcCcccCCEEECCC--CcCCcc-
Confidence            467889999999999998776  69999999999853              33345678888999888877  322211 


Q ss_pred             ccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--C
Q 044279          106 RFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--I  183 (305)
Q Consensus       106 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~  183 (305)
                        ....     +              ..+++|+.|++++|.++.++...+     ..+++|++|++++| .++.++.  +
T Consensus        75 --~~~~-----~--------------~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~  127 (251)
T 3m19_A           75 --SAGV-----F--------------DDLTELGTLGLANNQLASLPLGVF-----DHLTQLDKLYLGGN-QLKSLPSGVF  127 (251)
T ss_dssp             --CTTT-----T--------------TTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             --CHhH-----h--------------ccCCcCCEEECCCCcccccChhHh-----cccCCCCEEEcCCC-cCCCcChhHh
Confidence              1100     0              346677788887777776665442     56778888888887 6666542  5


Q ss_pred             CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecC-CCCCCCCCceEEeeCCC
Q 044279          184 RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICC-RAVPLPSLKTISVYDCP  258 (305)
Q Consensus       184 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~  258 (305)
                      ..+++|++|++++|. +..+++           ..++.+++|++|+++++ .++.++. ....+++|+.|++++++
T Consensus       128 ~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          128 DRLTKLKELRLNTNQ-LQSIPA-----------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCCcccEEECcCCc-CCccCH-----------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            667788888888864 444443           24567788888888887 6666554 34467788888887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=6.4e-17  Score=142.69  Aligned_cols=236  Identities=12%  Similarity=0.091  Sum_probs=141.3

Q ss_pred             CcccEEeCCCCCCccccc-----hhhhccc-ccccccccCCccccC-Ccccccc-----cccceeeccccceeeceEEEe
Q 044279            2 HALAVLDLSYNFDLVELP-----EAIGKLI-NLCHLNLSNTKIREL-PAGIKYL-----KNLKILRLDVFSWFSTELVAL   69 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~l~~l-p~~~~~l-----~~L~~L~l~~~~~~~~~~~l~   69 (305)
                      ++|++|++++| .++..+     ..+.+++ +|++|++++|++... +..+..+     ++|++|++++|.+...     
T Consensus        22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-----   95 (362)
T 3goz_A           22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-----   95 (362)
T ss_dssp             TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-----
T ss_pred             CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-----
Confidence            35888888888 677665     4467777 888888888888754 3345554     8888888888875310     


Q ss_pred             eccccccccccccccCc-cCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc--------ccC-CCcc
Q 044279           70 HHNFCCATTVLAGLESL-ENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD--------FRM-DHLE  138 (305)
Q Consensus        70 ~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--------~~~-~~L~  138 (305)
                           ....+...+..+ ++|+.|++++|.........+... ...+.+|++|+++.|.+++..        ... ++|+
T Consensus        96 -----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  170 (362)
T 3goz_A           96 -----SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN  170 (362)
T ss_dssp             -----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             -----HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence                 001111224444 788888888843222222222221 111235888888866666332        233 3888


Q ss_pred             EEEEeceecceecccccCCCcccCC-CccceEeeeCCCCCccC-----C-cCCC-CCCCCEEEEeccccccccccccCCC
Q 044279          139 TLEIVDCSLESINIYFGDQGRTYCF-RNLRHLSVKDCHFMTDL-----K-WIRC-APNLQFLYVSDCQVLSEIIGTYESP  210 (305)
Q Consensus       139 ~L~l~~~~l~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~-----~-~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~  210 (305)
                      .|++++|.+++.+....... ...+ ++|++|+|++| .+++.     + .+.. .++|++|++++|.. ...+.     
T Consensus       171 ~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~-----  242 (362)
T 3goz_A          171 SLNLRGNNLASKNCAELAKF-LASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSL-----  242 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCH-----
T ss_pred             EeeecCCCCchhhHHHHHHH-HHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHH-----
Confidence            88888888765553221000 1234 58888998888 56652     2 2223 35888898888764 22211     


Q ss_pred             CCccccccccccCccceeeccCcc--c-----CceecCCCCCCCCCceEEeeCCC
Q 044279          211 GTSEIEESHHFLSNLMVIDLQHLP--S-----LTSICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~~~--~-----l~~~~~~~~~~~~L~~L~l~~c~  258 (305)
                        ..+...+..+++|+.|++++|.  .     +..+......+++|+.|+++++.
T Consensus       243 --~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          243 --ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             --HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             --HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence              0011234677888888888884  1     22344445567778888887774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=1.9e-16  Score=140.80  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=144.3

Q ss_pred             CCcccEEeCCCCCCcc----ccchhh-------hcccccccccccCCcccc-----CCcccccccccceeeccccceeec
Q 044279            1 MHALAVLDLSYNFDLV----ELPEAI-------GKLINLCHLNLSNTKIRE-----LPAGIKYLKNLKILRLDVFSWFST   64 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~----~lp~~~-------~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~   64 (305)
                      +++|++|++++| .+.    .+|..+       ..+++|++|++++|.+..     +|..+..+++|++|++++|.+...
T Consensus        59 ~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           59 KKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             CTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             CCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            578999999997 433    345444       788999999999998875     777889999999999999985310


Q ss_pred             eEEEeeccccccccccccccCc---------cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccc-----
Q 044279           65 ELVALHHNFCCATTVLAGLESL---------ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSL-----  130 (305)
Q Consensus        65 ~~~l~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----  130 (305)
                                ....+...+..+         ++|+.|++++|......++.+.......++|++|+++.+.++..     
T Consensus       138 ----------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          138 ----------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence                      011223334444         89999999884322233332222222223599999996666621     


Q ss_pred             ---c-ccCCCccEEEEeceecc-----eecccccCCCcccCCCccceEeeeCCCCCccC------CcC--CCCCCCCEEE
Q 044279          131 ---D-FRMDHLETLEIVDCSLE-----SINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------KWI--RCAPNLQFLY  193 (305)
Q Consensus       131 ---~-~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~--~~~~~L~~L~  193 (305)
                         . ..+++|+.|++++|.++     .++..+      ..+++|++|+|++| .+++.      ..+  ..+++|++|+
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l------~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~  280 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL------KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLR  280 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG------GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH------ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEE
Confidence               1 57889999999999874     333322      67899999999999 56553      233  4489999999


Q ss_pred             Eeccccccc----cccccCCCCCccccccc-cccCccceeeccCcccCc
Q 044279          194 VSDCQVLSE----IIGTYESPGTSEIEESH-HFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       194 l~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~  237 (305)
                      +++|.....    ++.            .+ .++++|++|++++| .++
T Consensus       281 L~~n~i~~~g~~~l~~------------~l~~~l~~L~~L~l~~N-~l~  316 (386)
T 2ca6_A          281 LQYNEIELDAVRTLKT------------VIDEKMPDLLFLELNGN-RFS  316 (386)
T ss_dssp             CCSSCCBHHHHHHHHH------------HHHHHCTTCCEEECTTS-BSC
T ss_pred             CcCCcCCHHHHHHHHH------------HHHhcCCCceEEEccCC-cCC
Confidence            999875431    333            34 56899999999999 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=4.9e-17  Score=147.76  Aligned_cols=185  Identities=14%  Similarity=0.164  Sum_probs=86.6

Q ss_pred             CcccEEeCCCCCCcc-----ccchhhhcccccccccccCCccccC-Ccc-ccccc----ccceeeccccceeeceEEEee
Q 044279            2 HALAVLDLSYNFDLV-----ELPEAIGKLINLCHLNLSNTKIREL-PAG-IKYLK----NLKILRLDVFSWFSTELVALH   70 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~----~L~~L~l~~~~~~~~~~~l~~   70 (305)
                      ++|++|++++| .++     .++..+..+++|++|++++|.+... +.. ...++    +|++|++++|.+..       
T Consensus        28 ~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~-------   99 (461)
T 1z7x_W           28 QQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-------   99 (461)
T ss_dssp             TTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG-------
T ss_pred             CCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH-------
Confidence            45556666655 444     2344455556666666666555421 111 12233    46666666655321       


Q ss_pred             ccccccccccccccCccCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc--------ccCCCccEEE
Q 044279           71 HNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD--------FRMDHLETLE  141 (305)
Q Consensus        71 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--------~~~~~L~~L~  141 (305)
                         .....++..+..+++|+.|+++++.........+... ....++|++|+++.+.++...        ..+++|+.|+
T Consensus       100 ---~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W          100 ---AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             ---GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             ---HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence               0012445667777888888887732211112221110 111223777777744444321        3456677777


Q ss_pred             EeceecceecccccCCCcccCCCccceEeeeCCCCCccC------CcCCCCCCCCEEEEeccc
Q 044279          142 IVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------KWIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       142 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~l~~~~  198 (305)
                      +++|.+++.+......+.....++|++|++++| .+++.      ..+..+++|++|++++|.
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            776664443322110000012345666666665 33331      123345556666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.54  E-value=2e-14  Score=133.42  Aligned_cols=192  Identities=17%  Similarity=0.155  Sum_probs=145.0

Q ss_pred             ccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccc
Q 044279           27 NLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR  106 (305)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  106 (305)
                      +|+.|++++|++..+|..+.  ++|++|++++|.+               ..++   ..+++|+.|++++  +....++.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l---------------~~ip---~~l~~L~~L~Ls~--N~l~~ip~  117 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNAL---------------ISLP---ELPASLEYLDACD--NRLSTLPE  117 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCC---------------SCCC---CCCTTCCEEECCS--SCCSCCCC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCC---------------cccc---cccCCCCEEEccC--CCCCCcch
Confidence            89999999999999998774  8999999999984               2344   4578999999998  44444443


Q ss_pred             cccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCC
Q 044279          107 FQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCA  186 (305)
Q Consensus       107 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~  186 (305)
                      +      ..+|+.|+++.|.++.++..+++|+.|++++|.++.++         ..+++|+.|++++| .++.+|.+.  
T Consensus       118 l------~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp---------~~l~~L~~L~Ls~N-~L~~lp~l~--  179 (571)
T 3cvr_A          118 L------PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLP---------ELPTSLEVLSVRNN-QLTFLPELP--  179 (571)
T ss_dssp             C------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSS-CCSCCCCCC--
T ss_pred             h------hcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCC---------CcCCCcCEEECCCC-CCCCcchhh--
Confidence            2      22699999997777777767889999999999988777         35789999999999 777787643  


Q ss_pred             CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      ++|+.|++++|. +..++.  ..  .    ......+.|+.|++++| .++.++.....+++|+.|++++|+.-..+|..
T Consensus       180 ~~L~~L~Ls~N~-L~~lp~--~~--~----~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          180 ESLEALDVSTNL-LESLPA--VP--V----RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             TTCCEEECCSSC-CSSCCC--CC--------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             CCCCEEECcCCC-CCchhh--HH--H----hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            899999999975 444443  10  0    00111233399999999 88889887778999999999998755544444


Q ss_pred             Cc
Q 044279          267 SG  268 (305)
Q Consensus       267 ~~  268 (305)
                      +.
T Consensus       250 l~  251 (571)
T 3cvr_A          250 LS  251 (571)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=5.9e-15  Score=127.27  Aligned_cols=197  Identities=13%  Similarity=0.077  Sum_probs=143.7

Q ss_pred             CcccEEeCCCCCCcc-ccchhh--hcccccccccccCCcccc-CC----cccccccccceeeccccceeeceEEEeeccc
Q 044279            2 HALAVLDLSYNFDLV-ELPEAI--GKLINLCHLNLSNTKIRE-LP----AGIKYLKNLKILRLDVFSWFSTELVALHHNF   73 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~-~lp~~~--~~l~~L~~L~l~~~~l~~-lp----~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~   73 (305)
                      ++|++|++++| .+. ..|..+  ..+++|++|++++|.+.. .+    ..+..+++|++|++++|.+            
T Consensus        91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l------------  157 (310)
T 4glp_A           91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS------------  157 (310)
T ss_dssp             SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS------------
T ss_pred             CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc------------
Confidence            56999999999 655 556666  899999999999998874 22    2345799999999999985            


Q ss_pred             cccccccccccCccCccceeEEEeecCccccccccc--CCCccccceEEEEEcCCCcccc-------ccCCCccEEEEec
Q 044279           74 CCATTVLAGLESLENIHDISITLCFVDTHAFCRFQS--SPKLQSCVKRLTVASPWFSSLD-------FRMDHLETLEIVD  144 (305)
Q Consensus        74 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~-------~~~~~L~~L~l~~  144 (305)
                        ....+..+..+++|+.|++++  +.......+..  .....++|++|+++.|.++.++       ..+++|+.|++++
T Consensus       158 --~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          158 --PAFSCEQVRAFPALTSLDLSD--NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             --CCCCTTSCCCCTTCCEEECCS--CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             --chhhHHHhccCCCCCEEECCC--CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence              334456788999999999998  44322111111  1122245999999977776544       4669999999999


Q ss_pred             eeccee-cccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccC
Q 044279          145 CSLESI-NIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLS  223 (305)
Q Consensus       145 ~~l~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (305)
                      |.+++. |..+..   ...+++|++|++++| .++.+|... +++|+.|++++|.. ..++             .+..++
T Consensus       234 N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~l-~~~~-------------~~~~l~  294 (310)
T 4glp_A          234 NSLRATVNPSAPR---CMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNRL-NRAP-------------QPDELP  294 (310)
T ss_dssp             SCCCCCCCSCCSS---CCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCCC-CSCC-------------CTTSCC
T ss_pred             CCCCccchhhHHh---ccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCcC-CCCc-------------hhhhCC
Confidence            998776 433321   123479999999999 777776322 48999999999764 3332             246789


Q ss_pred             ccceeeccCcc
Q 044279          224 NLMVIDLQHLP  234 (305)
Q Consensus       224 ~L~~L~l~~~~  234 (305)
                      +|+.|++++++
T Consensus       295 ~L~~L~L~~N~  305 (310)
T 4glp_A          295 EVDNLTLDGNP  305 (310)
T ss_dssp             CCSCEECSSTT
T ss_pred             CccEEECcCCC
Confidence            99999999983

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=2e-16  Score=143.65  Aligned_cols=247  Identities=15%  Similarity=0.062  Sum_probs=119.2

Q ss_pred             CCcccEEeCCCCCCcccc-chhhh-----cccccccccccCCcccc-----CCcccccccccceeeccccceeec-----
Q 044279            1 MHALAVLDLSYNFDLVEL-PEAIG-----KLINLCHLNLSNTKIRE-----LPAGIKYLKNLKILRLDVFSWFST-----   64 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l-p~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~-----   64 (305)
                      +++|++|++++| .++.. +..+.     ...+|++|++++|++..     ++..+..+++|++|++++|.+.+.     
T Consensus       112 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          112 LPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL  190 (461)
T ss_dssp             CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             CCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence            356777777777 45422 12221     23456777776666542     334455566666666666654211     


Q ss_pred             -----------eEE-Eeecccccc--ccccccccCccCccceeEEEeecCccccccccc-CCCccccceEEEEEcCCCcc
Q 044279           65 -----------ELV-ALHHNFCCA--TTVLAGLESLENIHDISITLCFVDTHAFCRFQS-SPKLQSCVKRLTVASPWFSS  129 (305)
Q Consensus        65 -----------~~~-l~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~  129 (305)
                                 +.+ +.++.++..  ..++..+..+++|+.|+++++.........+.. .....++|++|+++.+.++.
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence                       000 011111000  013344455666666666662111111111111 01112347777777445554


Q ss_pred             -----cc---ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC------CcCCCCCCCCEEEEe
Q 044279          130 -----LD---FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------KWIRCAPNLQFLYVS  195 (305)
Q Consensus       130 -----~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~l~  195 (305)
                           ++   ..+++|+.|++++|.+++.+............++|++|++++| .++..      ..+..+++|++|+++
T Consensus       271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls  349 (461)
T 1z7x_W          271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQIS  349 (461)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEcc
Confidence                 22   3466777777777665443322110000122356777777777 44432      123455777777777


Q ss_pred             ccccccccccccCCCCCcccccccc-ccCccceeeccCcccCc-----eecCCCCCCCCCceEEeeCCC
Q 044279          196 DCQVLSEIIGTYESPGTSEIEESHH-FLSNLMVIDLQHLPSLT-----SICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c~  258 (305)
                      +|. +.......       +...+. ..++|++|++++| .++     .++.....+++|++|++++|+
T Consensus       350 ~n~-i~~~~~~~-------l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          350 NNR-LEDAGVRE-------LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             SSB-CHHHHHHH-------HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCc-cccccHHH-------HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            764 32221100       000111 2567888888887 554     344434457788888887773

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.52  E-value=4e-14  Score=114.82  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=120.9

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccccc-cc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL-AG   82 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~-~~   82 (305)
                      +.++.+++ .+..+|..+  ..+|++|++++|++..++.. ++.+++|++|++++|.+               ..++ ..
T Consensus        10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------~~~~~~~   71 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---------------QSLPNGV   71 (208)
T ss_dssp             TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---------------CCCCTTT
T ss_pred             CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---------------CccChhh
Confidence            45677777 777777544  45889999999988877765 67889999999998874               2333 34


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC  162 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  162 (305)
                      +..+++|+.|+++.  +....+   ....                   ...+++|+.|++++|.++.++....     ..
T Consensus        72 ~~~l~~L~~L~Ls~--n~l~~~---~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~-----~~  122 (208)
T 2o6s_A           72 FNKLTSLTYLNLST--NQLQSL---PNGV-------------------FDKLTQLKELALNTNQLQSLPDGVF-----DK  122 (208)
T ss_dssp             TTTCTTCCEEECCS--SCCCCC---CTTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TT
T ss_pred             cCCCCCcCEEECCC--CcCCcc---CHhH-------------------hcCccCCCEEEcCCCcCcccCHhHh-----cc
Confidence            57788888888877  322211   1100                   0346788888888888777765542     56


Q ss_pred             CCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceec
Q 044279          163 FRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC  240 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  240 (305)
                      +++|++|++++| .++.++  .+..+++|++|++++|..                   .+.+++|+.|+++.+..-..++
T Consensus       123 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~-------------------~~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          123 LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW-------------------DCTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB-------------------CCCTTTTHHHHHHHHHCTTTBB
T ss_pred             CCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe-------------------ecCCCCHHHHHHHHHhCCceee
Confidence            788888998888 666654  366788888998888753                   2456788888888774444666


Q ss_pred             CCCCCCC
Q 044279          241 CRAVPLP  247 (305)
Q Consensus       241 ~~~~~~~  247 (305)
                      ...+.++
T Consensus       183 ~~~~~l~  189 (208)
T 2o6s_A          183 NSAGSVA  189 (208)
T ss_dssp             CTTSSBC
T ss_pred             ccCcccc
Confidence            5544443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=1.1e-13  Score=130.23  Aligned_cols=124  Identities=18%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             ceEEEEEcCCCcccc----ccCCCccEEEEecee-cceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCC
Q 044279          117 VKRLTVASPWFSSLD----FRMDHLETLEIVDCS-LESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNL  189 (305)
Q Consensus       117 L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L  189 (305)
                      ++.++++.+.+....    ..++.|+.|++++|. ...+....     +..+++|+.|+|++| .++.++  .+.++++|
T Consensus       447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----CTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCchh-----hhhccccCEEECCCC-ccCCcChHHHcCCCCC
Confidence            666666644444333    556777778877776 44433333     256777888888877 565543  46677778


Q ss_pred             CEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecC-CCCCC-CCCceEEeeCCCC
Q 044279          190 QFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICC-RAVPL-PSLKTISVYDCPG  259 (305)
Q Consensus       190 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~l~~c~~  259 (305)
                      ++|+|++|. +..+++           ..+..+++|++|++++| .++.++. ....+ ++|+.|+++++|.
T Consensus       521 ~~L~Ls~N~-l~~l~~-----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          521 QVLNMSHNN-FFSLDT-----------FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             CEEECTTSC-CCBCCC-----------GGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CEEECCCCc-CCCCCh-----------hHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            888887754 444433           24567778888888877 5555433 33344 5677888777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=3e-15  Score=131.95  Aligned_cols=227  Identities=12%  Similarity=0.031  Sum_probs=151.4

Q ss_pred             EEeCCCCCCcc-ccchhhhcccccccccccCCccccCC-----ccccccc-ccceeeccccceeeceEEEeecccccccc
Q 044279            6 VLDLSYNFDLV-ELPEAIGKLINLCHLNLSNTKIRELP-----AGIKYLK-NLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         6 ~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~lp-----~~~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +++++++ .++ .+|..+....+|++|++++|.+...+     ..+..++ +|++|++++|.+.              ..
T Consensus         2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--------------~~   66 (362)
T 3goz_A            2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--------------FK   66 (362)
T ss_dssp             EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--------------GS
T ss_pred             ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--------------HH
Confidence            5688888 666 45555666667999999999998776     4577888 9999999999863              22


Q ss_pred             ccccccCc-----cCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc--------cc-CCCccEEEEe
Q 044279           79 VLAGLESL-----ENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD--------FR-MDHLETLEIV  143 (305)
Q Consensus        79 ~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--------~~-~~~L~~L~l~  143 (305)
                      .+..+..+     ++|+.|++++|.........+... ....++|++|+++.|.++...        .. ..+|+.|+++
T Consensus        67 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  146 (362)
T 3goz_A           67 NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR  146 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred             HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence            23344443     899999999843222222222221 111145999999977777655        22 4699999999


Q ss_pred             ceecceecccccCCCcccCC-CccceEeeeCCCCCccCC------cCCCC-CCCCEEEEeccccccccccccCCCCCccc
Q 044279          144 DCSLESINIYFGDQGRTYCF-RNLRHLSVKDCHFMTDLK------WIRCA-PNLQFLYVSDCQVLSEIIGTYESPGTSEI  215 (305)
Q Consensus       144 ~~~l~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~~------~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  215 (305)
                      +|.+++.+....... ...+ ++|++|++++| .+++..      .+..+ ++|++|++++|.. .....       ..+
T Consensus       147 ~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~-------~~l  216 (362)
T 3goz_A          147 GNDLGIKSSDELIQI-LAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSY-------AEL  216 (362)
T ss_dssp             TSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCH-------HHH
T ss_pred             CCcCCHHHHHHHHHH-HhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhHH-------HHH
Confidence            998775443221100 1234 49999999999 666543      23455 4999999999874 33111       001


Q ss_pred             cccccc-cCccceeeccCcccCcee-----cCCCCCCCCCceEEeeCCC
Q 044279          216 EESHHF-LSNLMVIDLQHLPSLTSI-----CCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       216 ~~~~~~-~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~  258 (305)
                      ...+.. .++|++|++++| .++..     ......+++|+.|++++|.
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            123344 459999999998 66543     2334578999999999884

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.51  E-value=1e-14  Score=136.50  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             cccccCccceeeccCcccCce--ecCCCCCCCCCceEEeeCCC
Q 044279          218 SHHFLSNLMVIDLQHLPSLTS--ICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       218 ~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~  258 (305)
                      ...++++|+.|+|++|+ ++.  ++.....+++|+.|++++|.
T Consensus       483 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          483 FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            34567888888888885 442  23223357888888888885

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.50  E-value=1.2e-13  Score=111.04  Aligned_cols=152  Identities=18%  Similarity=0.254  Sum_probs=110.9

Q ss_pred             ccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE
Q 044279           44 GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA  123 (305)
Q Consensus        44 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  123 (305)
                      ....+++|++|++++|.+               ..++ .+..+++|+.|++++  +....++.+                
T Consensus        39 ~~~~l~~L~~L~l~~n~i---------------~~l~-~l~~l~~L~~L~l~~--n~~~~~~~l----------------   84 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINV---------------TDLT-GIEYAHNIKDLTINN--IHATNYNPI----------------   84 (197)
T ss_dssp             BHHHHHTCCEEEEESSCC---------------SCCT-TGGGCTTCSEEEEES--CCCSCCGGG----------------
T ss_pred             ChhhcCCccEEeccCCCc---------------cChH-HHhcCCCCCEEEccC--CCCCcchhh----------------
Confidence            347788888888888764               2223 567777777777766  221111110                


Q ss_pred             cCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc--CCcCCCCCCCCEEEEecccccc
Q 044279          124 SPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDCQVLS  201 (305)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~  201 (305)
                              ..+++|+.|++++|.+++.....     +..+++|++|++++| .+++  +..+..+++|++|++++|..+.
T Consensus        85 --------~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~  150 (197)
T 4ezg_A           85 --------SGLSNLERLRIMGKDVTSDKIPN-----LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAIT  150 (197)
T ss_dssp             --------TTCTTCCEEEEECTTCBGGGSCC-----CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred             --------hcCCCCCEEEeECCccCcccChh-----hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence                    45788999999998877643333     267899999999999 6665  4467889999999999987555


Q ss_pred             ccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCC
Q 044279          202 EIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  258 (305)
                      .++             .+..+++|+.|++++| .++.++ ....+++|+.|++++++
T Consensus       151 ~~~-------------~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          151 DIM-------------PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCG-------------GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             ccH-------------hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence            543             3678999999999999 677776 46689999999998774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=8.3e-14  Score=117.23  Aligned_cols=146  Identities=13%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|++++| .++.+| .++.+++|++|++++|++..+|. ++.+++|++|++++|.+.               .++
T Consensus        40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~---------------~l~  101 (263)
T 1xeu_A           40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK---------------NLN  101 (263)
T ss_dssp             HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS---------------CCT
T ss_pred             cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC---------------CcC
Confidence            468999999999 888888 68999999999999999998887 999999999999999853               222


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                       .+.. ++|+.|++++  +....++.+...    ++|+.|+++.|.++.++  ..+++|+.|++++|.++++. .     
T Consensus       102 -~~~~-~~L~~L~L~~--N~l~~~~~l~~l----~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~-~-----  167 (263)
T 1xeu_A          102 -GIPS-ACLSRLFLDN--NELRDTDSLIHL----KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG-G-----  167 (263)
T ss_dssp             -TCCC-SSCCEEECCS--SCCSBSGGGTTC----TTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCT-T-----
T ss_pred             -cccc-CcccEEEccC--CccCCChhhcCc----ccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchH-H-----
Confidence             2333 8999999998  555555444443    34999999988787777  78899999999999987772 2     


Q ss_pred             cccCCCccceEeeeCCCCCccC
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                       ...+++|+.|++++| .+...
T Consensus       168 -l~~l~~L~~L~l~~N-~~~~~  187 (263)
T 1xeu_A          168 -LTRLKKVNWIDLTGQ-KCVNE  187 (263)
T ss_dssp             -STTCCCCCEEEEEEE-EEECC
T ss_pred             -hccCCCCCEEeCCCC-cccCC
Confidence             267899999999999 44443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=2.9e-13  Score=110.79  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      +.++.+++ .++.+|..+.  .+|+.|++++|++..+|. .+..+++|++|++++|.+.              ...+..+
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------~~~~~~~   76 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------ELAPDAF   76 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--------------EECTTTT
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--------------CcCHHHh
Confidence            34566666 5666665433  456666666666665554 3566666666666666532              1223444


Q ss_pred             cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCC
Q 044279           84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCF  163 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  163 (305)
                      ..+++|+.|++++  +....++.   ..                   ...+++|+.|++++|.++.++...+     ..+
T Consensus        77 ~~l~~L~~L~Ls~--N~l~~l~~---~~-------------------f~~l~~L~~L~L~~N~l~~~~~~~~-----~~l  127 (220)
T 2v9t_B           77 QGLRSLNSLVLYG--NKITELPK---SL-------------------FEGLFSLQLLLLNANKINCLRVDAF-----QDL  127 (220)
T ss_dssp             TTCSSCCEEECCS--SCCCCCCT---TT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TTC
T ss_pred             hCCcCCCEEECCC--CcCCccCH---hH-------------------ccCCCCCCEEECCCCCCCEeCHHHc-----CCC
Confidence            5555555555544  21111100   00                   0234555555555555554443321     445


Q ss_pred             CccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279          164 RNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       164 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~  198 (305)
                      ++|+.|+|++| .++.++  .+..+++|++|++++|.
T Consensus       128 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          128 HNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            55666666555 444432  24445555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.45  E-value=1.2e-14  Score=136.10  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=61.2

Q ss_pred             ccceEEEEEcCCCcccc-----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeC----------CCCCcc
Q 044279          115 SCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKD----------CHFMTD  179 (305)
Q Consensus       115 ~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~----------~~~l~~  179 (305)
                      ++|++|+++.+.++...     ..+++|+.|+++++ +.+......    ...+++|++|++.+          |..+++
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~----~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL----AQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH----HHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHH----HHhCCCCCEEEeecCccccccccccCccCH
Confidence            34666666622233211     45566666666522 222111110    13456667776663          434443


Q ss_pred             C--C-cCCCCCCCCEEEEeccccccccccccCCCCCcccccccc-ccCccceeeccC---cccCceecC------CCCCC
Q 044279          180 L--K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHH-FLSNLMVIDLQH---LPSLTSICC------RAVPL  246 (305)
Q Consensus       180 ~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~---~~~l~~~~~------~~~~~  246 (305)
                      .  . ....+++|++|++..+. +.....           ..++ .+++|+.|++++   |..++..+.      ....+
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~-l~~~~~-----------~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~  435 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSD-ITNESL-----------ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC  435 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESC-CCHHHH-----------HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHhhCccCeEEEeecCC-ccHHHH-----------HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence            2  1 12346667777764433 322111           1222 367777777763   334443221      12347


Q ss_pred             CCCceEEeeCCC
Q 044279          247 PSLKTISVYDCP  258 (305)
Q Consensus       247 ~~L~~L~l~~c~  258 (305)
                      ++|+.|+++.|.
T Consensus       436 ~~L~~L~L~~~~  447 (592)
T 3ogk_B          436 KKLRRFAFYLRQ  447 (592)
T ss_dssp             TTCCEEEEECCG
T ss_pred             CCCCEEEEecCC
Confidence            778888887665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.43  E-value=1.8e-14  Score=134.94  Aligned_cols=62  Identities=13%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCcee--cCCCCCCCCCceEEeeCCCC
Q 044279          186 APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI--CCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       186 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~  259 (305)
                      +++|+.|++++|........           .....+++|+.|+|++|+. +..  ......+++|+.|++++|+.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            56666666666553211111           1225689999999999854 422  22234578999999999965

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=5.6e-13  Score=108.02  Aligned_cols=180  Identities=15%  Similarity=0.120  Sum_probs=132.1

Q ss_pred             ccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccc
Q 044279           29 CHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQ  108 (305)
Q Consensus        29 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  108 (305)
                      +.++.+++.+..+|..+  .++|++|++++|.+.              ......+..+++|+.|++++  +....   +.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~--n~l~~---~~   68 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLK--------------SLPNGVFDELTSLTQLYLGG--NKLQS---LP   68 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCC--------------CCCTTTTTTCTTCSEEECCS--SCCCC---CC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccC--------------cCChhhhcccccCcEEECCC--CccCc---cC
Confidence            56777778888888665  369999999999752              22233467888888888877  32221   11


Q ss_pred             cCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--CCCC
Q 044279          109 SSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--IRCA  186 (305)
Q Consensus       109 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~  186 (305)
                      ...                   ...+++|+.|++++|.++.++....     ..+++|++|++++| .++.++.  +..+
T Consensus        69 ~~~-------------------~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~~~l  123 (208)
T 2o6s_A           69 NGV-------------------FNKLTSLTYLNLSTNQLQSLPNGVF-----DKLTQLKELALNTN-QLQSLPDGVFDKL  123 (208)
T ss_dssp             TTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             hhh-------------------cCCCCCcCEEECCCCcCCccCHhHh-----cCccCCCEEEcCCC-cCcccCHhHhccC
Confidence            100                   0357889999999999888776542     67899999999999 7777653  6789


Q ss_pred             CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      ++|++|++++|. +..++.           ..+..+++|++|++++++-       .+.+++|+.|+++.+..-..+|..
T Consensus       124 ~~L~~L~l~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          124 TQLKDLRLYQNQ-LKSVPD-----------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             TTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             CcCCEEECCCCc-cceeCH-----------HHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHhCCceeecc
Confidence            999999999976 444443           2467899999999999942       245788999999888777788888


Q ss_pred             CccccCc
Q 044279          267 SGSAKNS  273 (305)
Q Consensus       267 ~~~~~~~  273 (305)
                      +..++..
T Consensus       185 ~~~l~~~  191 (208)
T 2o6s_A          185 AGSVAPD  191 (208)
T ss_dssp             TSSBCTT
T ss_pred             CccccCC
Confidence            8877643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=5.1e-13  Score=117.61  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=87.7

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cc-cccccceeeccccceeeceEEEeecccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IK-YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      +.++++++ .++.+|..+.  ..++.|++++|++..++.. +. .+++|++|++++|.+.              ...+..
T Consensus        21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--------------~i~~~~   83 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------FISSEA   83 (361)
T ss_dssp             TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--------------EECTTT
T ss_pred             CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--------------ccChhh
Confidence            46777777 7777776543  3477888888888776655 44 7788888888887742              222345


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC  162 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  162 (305)
                      +..+++|+.|++++  +....+..   ..                   ...+++|+.|++++|.++.++...     +..
T Consensus        84 ~~~l~~L~~L~Ls~--N~l~~~~~---~~-------------------~~~l~~L~~L~L~~N~i~~~~~~~-----~~~  134 (361)
T 2xot_A           84 FVPVPNLRYLDLSS--NHLHTLDE---FL-------------------FSDLQALEVLLLYNNHIVVVDRNA-----FED  134 (361)
T ss_dssp             TTTCTTCCEEECCS--SCCCEECT---TT-------------------TTTCTTCCEEECCSSCCCEECTTT-----TTT
T ss_pred             ccCCCCCCEEECCC--CcCCcCCH---HH-------------------hCCCcCCCEEECCCCcccEECHHH-----hCC
Confidence            67777777777766  32222111   00                   034566666666666665554333     255


Q ss_pred             CCccceEeeeCCCCCccCCc--C---CCCCCCCEEEEeccc
Q 044279          163 FRNLRHLSVKDCHFMTDLKW--I---RCAPNLQFLYVSDCQ  198 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~~~--~---~~~~~L~~L~l~~~~  198 (305)
                      +++|+.|+|++| .++.++.  +   ..+++|+.|++++|.
T Consensus       135 l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          135 MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            666777777666 5555442  2   346667777776644

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.42  E-value=9e-13  Score=108.54  Aligned_cols=58  Identities=16%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccc
Q 044279          134 MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~  198 (305)
                      +++|+.|++++|.++.++..+      ..+++|+.|++++| .++.++  .+..+++|+.|++++|.
T Consensus       111 l~~L~~L~Ls~N~l~~lp~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          111 LVHLKELFMCCNKLTELPRGI------ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTCCEEECCSSCCCSCCTTG------GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             chhhCeEeccCCcccccCccc------ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            455566666655555554333      34556666666665 444443  24455566666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.40  E-value=1.5e-14  Score=135.36  Aligned_cols=60  Identities=17%  Similarity=0.167  Sum_probs=30.2

Q ss_pred             CCccceEeeeCCCCCccC--CcC-CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          163 FRNLRHLSVKDCHFMTDL--KWI-RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      +++|+.|++++| .+++.  ..+ ..+++|++|++++|........           .....+++|+.|++++|+
T Consensus       455 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~-----------~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          455 AKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL-----------ANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH-----------HTGGGGGGSSEEEEESSC
T ss_pred             chhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH-----------HHHHhCCCCCEEeeeCCC
Confidence            455666666665 33332  111 3456666666666654111111           123346666666666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=4.7e-13  Score=104.66  Aligned_cols=130  Identities=18%  Similarity=0.225  Sum_probs=93.6

Q ss_pred             hcccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279           23 GKLINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD  100 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  100 (305)
                      ...++|++|++++|++.  .+|..+..+++|++|++++|.+.               .. ..+..+++|+.|++++  +.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---------------~~-~~~~~l~~L~~L~Ls~--N~   82 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------------SV-SNLPKLPKLKKLELSE--NR   82 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---------------CC-SSCCCCSSCCEEEEES--CC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---------------Ch-hhhccCCCCCEEECcC--Cc
Confidence            44577888999888887  88877888889999999888742               22 6778888888888888  32


Q ss_pred             ccc-ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCc
Q 044279          101 THA-FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMT  178 (305)
Q Consensus       101 ~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~  178 (305)
                      ... ++...                       ..+++|+.|++++|.+++++. ..     +..+++|+.|++++| .++
T Consensus        83 l~~~~~~~~-----------------------~~l~~L~~L~Ls~N~l~~~~~~~~-----l~~l~~L~~L~l~~N-~l~  133 (168)
T 2ell_A           83 IFGGLDMLA-----------------------EKLPNLTHLNLSGNKLKDISTLEP-----LKKLECLKSLDLFNC-EVT  133 (168)
T ss_dssp             CCSCCCHHH-----------------------HHCTTCCEEECBSSSCCSSGGGGG-----GSSCSCCCEEECCSS-GGG
T ss_pred             CchHHHHHH-----------------------hhCCCCCEEeccCCccCcchhHHH-----HhcCCCCCEEEeeCC-cCc
Confidence            222 11110                       347788888888888777652 22     267888999999888 555


Q ss_pred             cCC-----cCCCCCCCCEEEEecccc
Q 044279          179 DLK-----WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       179 ~~~-----~~~~~~~L~~L~l~~~~~  199 (305)
                      .++     .+..+++|++|++++|..
T Consensus       134 ~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          134 NLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             chHHHHHHHHHhCccCcEecCCCCCh
Confidence            554     366788899999988764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=3e-12  Score=111.18  Aligned_cols=215  Identities=17%  Similarity=0.078  Sum_probs=124.3

Q ss_pred             CCcccEEeCCCCCCcc--------------------ccch-hhhc--------ccccccccccCCccccCCcc-cccccc
Q 044279            1 MHALAVLDLSYNFDLV--------------------ELPE-AIGK--------LINLCHLNLSNTKIRELPAG-IKYLKN   50 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~--------------------~lp~-~~~~--------l~~L~~L~l~~~~l~~lp~~-~~~l~~   50 (305)
                      +++|++||+++| .+.                    .+|+ .+.+        +.+|+.+++.. +++.++.. |.+|++
T Consensus        48 l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence            478999999999 665                    3443 3667        88899999888 77777665 888899


Q ss_pred             cceeeccccceeeceEEEeeccccccccccccccCccCccceeEEE-----------------ee--------cCccccc
Q 044279           51 LKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITL-----------------CF--------VDTHAFC  105 (305)
Q Consensus        51 L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------------~~--------~~~~~~~  105 (305)
                      |++++++.+.+..              -....+..+.++..+....                 |.        .....++
T Consensus       126 L~~l~l~~n~i~~--------------i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~  191 (329)
T 3sb4_A          126 LKICQIRKKTAPN--------------LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE  191 (329)
T ss_dssp             CCEEEBCCSSCCE--------------ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred             cceEEcCCCCccc--------------cchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence            9999998886432              1112223333332221111                 00        0000000


Q ss_pred             c-cccCCCccccceEEEEEcCCCcccc-----ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCcc
Q 044279          106 R-FQSSPKLQSCVKRLTVASPWFSSLD-----FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTD  179 (305)
Q Consensus       106 ~-l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~  179 (305)
                      . +....-...+++.+.+... +....     ..+++|+.+++++|.++.++...+     ..+.+|++|++.++  ++.
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-----~~~~~L~~l~l~~n--i~~  263 (329)
T 3sb4_A          192 DEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-----AQKKYLLKIKLPHN--LKT  263 (329)
T ss_dssp             HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-----TTCTTCCEEECCTT--CCE
T ss_pred             HHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-----hCCCCCCEEECCcc--cce
Confidence            0 0000001112333433311 11111     236778888888777777776653     67778888888775  555


Q ss_pred             CC--cCCCCCCCC-EEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEE
Q 044279          180 LK--WIRCAPNLQ-FLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTIS  253 (305)
Q Consensus       180 ~~--~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~  253 (305)
                      ++  .|..|++|+ .+.+.+  .++.+..           ..+.++++|+.+++..+ .++.++... ..+++|+.++
T Consensus       264 I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          264 IGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             ehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence            43  566778888 888877  3555544           35667788888887776 677766543 3566777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=2.3e-12  Score=105.45  Aligned_cols=149  Identities=18%  Similarity=0.147  Sum_probs=106.9

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCc--ccccccccceeeccccceeeceEEEeecccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPA--GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAG   82 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (305)
                      +.++++++ .++++|..+.  ..+++|++++|++..++.  .++.+++|++|++++|.+.              ...+..
T Consensus        14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--------------~i~~~~   76 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------DIEEGA   76 (220)
T ss_dssp             TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------EECTTT
T ss_pred             CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------EECHHH
Confidence            57888888 7888887553  346888999988887643  3788889999999888752              222346


Q ss_pred             ccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccC
Q 044279           83 LESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYC  162 (305)
Q Consensus        83 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  162 (305)
                      +..+++|+.|++++  +....+..                      .....+++|+.|++++|.++.++...+     ..
T Consensus        77 ~~~l~~L~~L~Ls~--N~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~  127 (220)
T 2v70_A           77 FEGASGVNEILLTS--NRLENVQH----------------------KMFKGLESLKTLMLRSNRITCVGNDSF-----IG  127 (220)
T ss_dssp             TTTCTTCCEEECCS--SCCCCCCG----------------------GGGTTCSSCCEEECTTSCCCCBCTTSS-----TT
T ss_pred             hCCCCCCCEEECCC--CccCccCH----------------------hHhcCCcCCCEEECCCCcCCeECHhHc-----CC
Confidence            77778888887777  32211110                      000457889999999998887765442     67


Q ss_pred             CCccceEeeeCCCCCccC-C-cCCCCCCCCEEEEeccccc
Q 044279          163 FRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~~  200 (305)
                      +++|+.|+|++| .++.+ + .+..+++|++|++++|...
T Consensus       128 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          128 LSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            899999999998 66665 2 5778899999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=2.2e-15  Score=140.10  Aligned_cols=183  Identities=15%  Similarity=0.111  Sum_probs=126.6

Q ss_pred             cccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccc----------ccccccCCCcc
Q 044279           45 IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHA----------FCRFQSSPKLQ  114 (305)
Q Consensus        45 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------~~~l~~~~~~~  114 (305)
                      +..+++|+.|++++|.               ...+|..++.+++|+.|++..+.. ...          ...........
T Consensus       345 ~~~~~~L~~L~Ls~n~---------------L~~Lp~~i~~l~~L~~L~l~~n~~-l~~l~~ll~~~~~~~~~~~~l~~l  408 (567)
T 1dce_A          345 SATDEQLFRCELSVEK---------------STVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYF  408 (567)
T ss_dssp             CSTTTTSSSCCCCHHH---------------HHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             cccCccceeccCChhh---------------HHhhHHHHHHHHHHHHhccccchh-hhhHHHHHHhcccccCCHHHHHHH
Confidence            3678899999999998               457899999999999998755210 000          00000000111


Q ss_pred             ccceEEE-EEcCCCcccc-----------ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-
Q 044279          115 SCVKRLT-VASPWFSSLD-----------FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-  181 (305)
Q Consensus       115 ~~L~~L~-l~~~~~~~~~-----------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-  181 (305)
                      .+|+.|+ ++.+.+.++.           .....|+.|++++|.++.+|. +      ..+++|+.|+|++| .++.+| 
T Consensus       409 ~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~------~~l~~L~~L~Ls~N-~l~~lp~  480 (567)
T 1dce_A          409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-L------EQLLLVTHLDLSHN-RLRALPP  480 (567)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-G------GGGTTCCEEECCSS-CCCCCCG
T ss_pred             HhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-c------cccccCcEeecCcc-cccccch
Confidence            2355554 2222211111           123468999999999888774 3      67899999999999 777775 


Q ss_pred             cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCcee--cCCCCCCCCCceEEeeCCCC
Q 044279          182 WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI--CCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       182 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~  259 (305)
                      .+..+++|+.|++++|.. ..++             .++.+++|+.|++++| .++.+  +.....+++|+.|+++++ .
T Consensus       481 ~~~~l~~L~~L~Ls~N~l-~~lp-------------~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~  544 (567)
T 1dce_A          481 ALAALRCLEVLQASDNAL-ENVD-------------GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-S  544 (567)
T ss_dssp             GGGGCTTCCEEECCSSCC-CCCG-------------GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-G
T ss_pred             hhhcCCCCCEEECCCCCC-CCCc-------------ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-c
Confidence            677899999999999764 3332             4678999999999998 77777  666778999999999877 5


Q ss_pred             CCCCCCCC
Q 044279          260 LRKLPLNS  267 (305)
Q Consensus       260 l~~~~~~~  267 (305)
                      +..+|..+
T Consensus       545 l~~~~~~~  552 (567)
T 1dce_A          545 LCQEEGIQ  552 (567)
T ss_dssp             GGGSSSCT
T ss_pred             CCCCccHH
Confidence            66665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.36  E-value=3.9e-12  Score=104.73  Aligned_cols=148  Identities=20%  Similarity=0.115  Sum_probs=80.6

Q ss_pred             cccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccccc
Q 044279           28 LCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRF  107 (305)
Q Consensus        28 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  107 (305)
                      -..++.+++++..+|..+.  ++|++|++++|.+.              ...+..+..+++|+.|++++  +....+   
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~L~~--N~l~~i---   79 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQIT--------------KLEPGVFDSLINLKELYLGS--NQLGAL---   79 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCS--SCCCCC---
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccC--------------ccCHHHhhCccCCcEEECCC--CCCCCc---
Confidence            4556777777777776554  67777777777642              22234455555555555554  211111   


Q ss_pred             ccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC-cCCCC
Q 044279          108 QSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK-WIRCA  186 (305)
Q Consensus       108 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~  186 (305)
                      ....                   ...+++|+.|++++|.++.++...+     ..+++|+.|++++| .++.++ .+..+
T Consensus        80 ~~~~-------------------~~~l~~L~~L~Ls~N~l~~l~~~~~-----~~l~~L~~L~Ls~N-~l~~lp~~~~~l  134 (229)
T 3e6j_A           80 PVGV-------------------FDSLTQLTVLDLGTNQLTVLPSAVF-----DRLVHLKELFMCCN-KLTELPRGIERL  134 (229)
T ss_dssp             CTTT-------------------TTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCSCCTTGGGC
T ss_pred             Chhh-------------------cccCCCcCEEECCCCcCCccChhHh-----CcchhhCeEeccCC-cccccCcccccC
Confidence            0000                   0235566666666666655554432     45666666666666 455543 34456


Q ss_pred             CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                      ++|++|++++|. +..++.           ..+..+++|+.|++.++
T Consensus       135 ~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          135 THLTHLALDQNQ-LKSIPH-----------GAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTCSEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECTTS
T ss_pred             CCCCEEECCCCc-CCccCH-----------HHHhCCCCCCEEEeeCC
Confidence            666666666643 333332           23455666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=5.9e-12  Score=102.95  Aligned_cols=148  Identities=13%  Similarity=0.172  Sum_probs=96.4

Q ss_pred             ccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccc
Q 044279           29 CHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQ  108 (305)
Q Consensus        29 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  108 (305)
                      +.++++++++..+|..+.  ++|++|++++|.+.              ...+..+..+++|+.|++++  +....+   .
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~--------------~i~~~~~~~l~~L~~L~Ls~--N~i~~~---~   72 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIK--------------VIPPGAFSPYKKLRRIDLSN--NQISEL---A   72 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCC--------------EECTTSSTTCTTCCEEECCS--SCCCEE---C
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCC--------------CcCHhHhhCCCCCCEEECCC--CcCCCc---C
Confidence            678888888999988765  78999999998752              12223566677777777766  222111   0


Q ss_pred             cCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCC
Q 044279          109 SSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCA  186 (305)
Q Consensus       109 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~  186 (305)
                      .. .    +              ..+++|+.|++++|.++.++...+     ..+++|+.|+|++| .++.++  .+..+
T Consensus        73 ~~-~----~--------------~~l~~L~~L~Ls~N~l~~l~~~~f-----~~l~~L~~L~L~~N-~l~~~~~~~~~~l  127 (220)
T 2v9t_B           73 PD-A----F--------------QGLRSLNSLVLYGNKITELPKSLF-----EGLFSLQLLLLNAN-KINCLRVDAFQDL  127 (220)
T ss_dssp             TT-T----T--------------TTCSSCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             HH-H----h--------------hCCcCCCEEECCCCcCCccCHhHc-----cCCCCCCEEECCCC-CCCEeCHHHcCCC
Confidence            00 0    0              346777788887777777765542     56777888888887 555552  46677


Q ss_pred             CCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          187 PNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       187 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      ++|++|++++|. +..+++           ..+..+++|+.|++++++
T Consensus       128 ~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          128 HNLNLLSLYDNK-LQTIAK-----------GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSSC-CSCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCc-CCEECH-----------HHHhCCCCCCEEEeCCCC
Confidence            778888887755 333333           245567777777777763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=8.2e-12  Score=102.10  Aligned_cols=149  Identities=14%  Similarity=0.151  Sum_probs=88.1

Q ss_pred             cccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccccccc
Q 044279           28 LCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRF  107 (305)
Q Consensus        28 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  107 (305)
                      -+.++++++.+..+|..+.  ..+++|++++|.+..             ......+..+++|+.|++++  +....+.  
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~-------------~~~~~~~~~l~~L~~L~L~~--N~i~~i~--   73 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTV-------------LEATGIFKKLPQLRKINFSN--NKITDIE--   73 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCE-------------ECCCCCGGGCTTCCEEECCS--SCCCEEC--
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCc-------------cCchhhhccCCCCCEEECCC--CcCCEEC--
Confidence            3588999999999987664  467899999987531             11112355666666666655  2211110  


Q ss_pred             ccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCC
Q 044279          108 QSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRC  185 (305)
Q Consensus       108 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~  185 (305)
                       .. .    +              ..+++|+.|++++|.++.++...+     ..+++|++|+|++| .++.++  .+..
T Consensus        74 -~~-~----~--------------~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~  127 (220)
T 2v70_A           74 -EG-A----F--------------EGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSN-RITCVGNDSFIG  127 (220)
T ss_dssp             -TT-T----T--------------TTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTS-CCCCBCTTSSTT
T ss_pred             -HH-H----h--------------CCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCC-cCCeECHhHcCC
Confidence             00 0    0              345667777777776666655432     55677777777776 555442  4556


Q ss_pred             CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          186 APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       186 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                      +++|++|++++|. +..+++           ..+..+++|+.|+++++
T Consensus       128 l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          128 LSSVRLLSLYDNQ-ITTVAP-----------GAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CTTCSEEECTTSC-CCCBCT-----------TTTTTCTTCCEEECCSC
T ss_pred             CccCCEEECCCCc-CCEECH-----------HHhcCCCCCCEEEecCc
Confidence            6777777777754 333322           24556667777777666

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.31  E-value=2e-12  Score=113.74  Aligned_cols=155  Identities=19%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             CcccEEeCCCCCCccccchh-hh-cccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeecccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEA-IG-KLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +.+++|++++| .++.++.. +. ++.+|++|++++|++..++. .+..+++|++|++++|.+.              ..
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~--------------~~  103 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH--------------TL  103 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EE
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC--------------cC
Confidence            45899999999 88888765 55 89999999999999998775 4899999999999999853              22


Q ss_pred             ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCC
Q 044279           79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      ....+..+++|+.|++++  +....+..  ...                    ..+++|+.|++++|.++.++...+.. 
T Consensus       104 ~~~~~~~l~~L~~L~L~~--N~i~~~~~--~~~--------------------~~l~~L~~L~L~~N~l~~l~~~~~~~-  158 (361)
T 2xot_A          104 DEFLFSDLQALEVLLLYN--NHIVVVDR--NAF--------------------EDMAQLQKLYLSQNQISRFPVELIKD-  158 (361)
T ss_dssp             CTTTTTTCTTCCEEECCS--SCCCEECT--TTT--------------------TTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred             CHHHhCCCcCCCEEECCC--CcccEECH--HHh--------------------CCcccCCEEECCCCcCCeeCHHHhcC-
Confidence            334578889999999988  33322210  000                    23455666666665555555433100 


Q ss_pred             cccCCCccceEeeeCCCCCccCC--cCCCCCC--CCEEEEeccc
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLK--WIRCAPN--LQFLYVSDCQ  198 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~--L~~L~l~~~~  198 (305)
                       ...+++|+.|+|++| .++.++  .+..++.  ++.|++++|.
T Consensus       159 -~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          159 -GNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             -cccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence             023556666666665 444443  2333443  3556666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.28  E-value=1.3e-12  Score=100.06  Aligned_cols=124  Identities=16%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             ccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279           25 LINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH  102 (305)
Q Consensus        25 l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  102 (305)
                      .++|+.|++++|.+.  .+|..++.+++|++|++++|.+.               .. ..+..+++|+.|++++  +...
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~-~~~~~l~~L~~L~Ls~--n~i~   77 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------------SI-ANLPKLNKLKKLELSD--NRVS   77 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---------------CC-TTCCCCTTCCEEECCS--SCCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---------------Cc-hhhhcCCCCCEEECCC--Cccc
Confidence            356666666666665  56655666666666666666532               11 5556666666666655  2211


Q ss_pred             c-ccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCccC
Q 044279          103 A-FCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       103 ~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      . ++...                       ..+++|+.|++++|.+++++. ..     ...+++|++|++++| .++.+
T Consensus        78 ~~~~~~~-----------------------~~l~~L~~L~ls~N~i~~~~~~~~-----~~~l~~L~~L~l~~N-~l~~~  128 (149)
T 2je0_A           78 GGLEVLA-----------------------EKCPNLTHLNLSGNKIKDLSTIEP-----LKKLENLKSLDLFNC-EVTNL  128 (149)
T ss_dssp             SCTHHHH-----------------------HHCTTCCEEECTTSCCCSHHHHGG-----GGGCTTCCEEECTTC-GGGGS
T ss_pred             chHHHHh-----------------------hhCCCCCEEECCCCcCCChHHHHH-----HhhCCCCCEEeCcCC-cccch
Confidence            1 11100                       235566666666666555431 11     255677777777777 55554


Q ss_pred             Cc-----CCCCCCCCEEEEe
Q 044279          181 KW-----IRCAPNLQFLYVS  195 (305)
Q Consensus       181 ~~-----~~~~~~L~~L~l~  195 (305)
                      +.     +..+++|++|+++
T Consensus       129 ~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          129 NDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHHHHHHHCCCcccccCC
Confidence            32     4556777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.27  E-value=1.3e-11  Score=96.40  Aligned_cols=141  Identities=16%  Similarity=0.100  Sum_probs=95.4

Q ss_pred             cccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC
Q 044279           47 YLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW  126 (305)
Q Consensus        47 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  126 (305)
                      ..++|++|++++|.+.             ...++..+..+++|+.|++++  +....+   ...                
T Consensus        22 ~~~~L~~L~l~~n~l~-------------~~~i~~~~~~l~~L~~L~l~~--n~l~~~---~~~----------------   67 (168)
T 2ell_A           22 TPAAVRELVLDNCKSN-------------DGKIEGLTAEFVNLEFLSLIN--VGLISV---SNL----------------   67 (168)
T ss_dssp             CTTSCSEEECCSCBCB-------------TTBCSSCCGGGGGCCEEEEES--SCCCCC---SSC----------------
T ss_pred             CcccCCEEECCCCCCC-------------hhhHHHHHHhCCCCCEEeCcC--CCCCCh---hhh----------------
Confidence            3478999999998752             135566678888888888887  322222   110                


Q ss_pred             CccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCEEEEecccccccc
Q 044279          127 FSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQFLYVSDCQVLSEI  203 (305)
Q Consensus       127 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~  203 (305)
                           ..+++|+.|++++|.++......     ...+++|++|++++| .+++++   .+..+++|+.|++++|... .+
T Consensus        68 -----~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~  135 (168)
T 2ell_A           68 -----PKLPKLKKLELSENRIFGGLDML-----AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT-NL  135 (168)
T ss_dssp             -----CCCSSCCEEEEESCCCCSCCCHH-----HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG-TS
T ss_pred             -----ccCCCCCEEECcCCcCchHHHHH-----HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc-ch
Confidence                 34778888898888876633222     256889999999998 666653   5678899999999997643 22


Q ss_pred             ccccCCCCCccccccccccCccceeeccCcccCceecCC
Q 044279          204 IGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR  242 (305)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  242 (305)
                      +...        ...+..+++|++|++++| .+.+++..
T Consensus       136 ~~~~--------~~~~~~l~~L~~L~l~~n-~~~~~~~~  165 (168)
T 2ell_A          136 NDYR--------ESVFKLLPQLTYLDGYDR-EDQEAPDS  165 (168)
T ss_dssp             TTHH--------HHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred             HHHH--------HHHHHhCccCcEecCCCC-Chhhcccc
Confidence            2100        014667899999999998 56666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=9.6e-12  Score=97.98  Aligned_cols=132  Identities=14%  Similarity=0.134  Sum_probs=85.6

Q ss_pred             hhcccccccccccCCccccCCccccccc-ccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279           22 IGKLINLCHLNLSNTKIRELPAGIKYLK-NLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD  100 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  100 (305)
                      +.++.+|+.|++++|++..+|. +..+. +|++|++++|.+.               .+ ..+..+++|+.|++++  +.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~---------------~~-~~l~~l~~L~~L~Ls~--N~   75 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR---------------KL-DGFPLLRRLKTLLVNN--NR   75 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC---------------EE-CCCCCCSSCCEEECCS--SC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC---------------cc-cccccCCCCCEEECCC--Cc
Confidence            4566777888888877777753 44444 7888888887642               22 5677777788777776  32


Q ss_pred             cccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCcc
Q 044279          101 THAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTD  179 (305)
Q Consensus       101 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~  179 (305)
                      ...++.   .                   +...+++|+.|++++|.+++++. ..     ...+++|+.|++++| .++.
T Consensus        76 l~~~~~---~-------------------~~~~l~~L~~L~L~~N~i~~~~~~~~-----l~~l~~L~~L~l~~N-~i~~  127 (176)
T 1a9n_A           76 ICRIGE---G-------------------LDQALPDLTELILTNNSLVELGDLDP-----LASLKSLTYLCILRN-PVTN  127 (176)
T ss_dssp             CCEECS---C-------------------HHHHCTTCCEEECCSCCCCCGGGGGG-----GGGCTTCCEEECCSS-GGGG
T ss_pred             ccccCc---c-------------------hhhcCCCCCEEECCCCcCCcchhhHh-----hhcCCCCCEEEecCC-CCCC
Confidence            221110   0                   00346778888888887766664 12     256788888888888 5555


Q ss_pred             CCc-----CCCCCCCCEEEEeccccc
Q 044279          180 LKW-----IRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       180 ~~~-----~~~~~~L~~L~l~~~~~~  200 (305)
                      ++.     +..+++|+.|++++|..-
T Consensus       128 ~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          128 KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            543     567888888888887643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.21  E-value=5.1e-11  Score=95.34  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~   61 (305)
                      ++++++++ .++.+|..+.  .+|++|++++|++..+|..+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI   66 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC
Confidence            35566666 5566665432  456666666666666665566666666666666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.21  E-value=4.9e-11  Score=95.34  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=34.0

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc--cccccccceeeccccce
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG--IKYLKNLKILRLDVFSW   61 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~~   61 (305)
                      ++++++++ .++++|..+..  +|++|++++|++..++..  ++.+++|++|++++|.+
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC
Confidence            45666666 66666654433  666777777766665543  66666777777766653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=1.2e-11  Score=94.55  Aligned_cols=58  Identities=24%  Similarity=0.396  Sum_probs=26.5

Q ss_pred             CCCccEEEEeceecce-ecccccCCCcccCCCccceEeeeCCCCCccC---CcCCCCCCCCEEEEeccc
Q 044279          134 MDHLETLEIVDCSLES-INIYFGDQGRTYCFRNLRHLSVKDCHFMTDL---KWIRCAPNLQFLYVSDCQ  198 (305)
Q Consensus       134 ~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~~~L~~L~l~~~~  198 (305)
                      +++|+.|++++|.+++ ++..+      ..+++|++|++++| .++++   ..+..+++|++|++++|.
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~------~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLA------EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHH------HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CCCCCEEECCCCcccchHHHHh------hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            4445555555555443 22111      23455555555555 33332   234445555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.14  E-value=2.7e-10  Score=91.08  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             EEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEec
Q 044279          120 LTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSD  196 (305)
Q Consensus       120 L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~  196 (305)
                      ++++.+.++.++ .-.++|+.|++++|.++.++..+      ..+++|+.|++++| .++.++  .+..+++|++|++++
T Consensus        15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~------~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKEL------SNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGG------GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHh------hcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence            333344555555 33467888888888877776433      67888888888888 666654  467788888888888


Q ss_pred             cccccccccccCCCCCccccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCCC
Q 044279          197 CQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCPG  259 (305)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~  259 (305)
                      |. +..+++           ..+..+++|++|+++++ .++.++.. ...+++|+.|++++++.
T Consensus        88 N~-l~~i~~-----------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NR-LRCIPP-----------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SC-CCBCCT-----------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             Cc-cCEeCH-----------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence            65 444443           25667888888888888 67777654 44688888888877753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=3.4e-10  Score=89.09  Aligned_cols=124  Identities=19%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEE
Q 044279          118 KRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYV  194 (305)
Q Consensus       118 ~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l  194 (305)
                      +.++++.+.+..++ ...++|+.|++++|.++.++....     ..+++|++|++++| .++.++  .+..+++|++|++
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-----DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh-----cCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence            34444445555555 445789999999988877775542     67899999999998 677765  3678899999999


Q ss_pred             eccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCCC
Q 044279          195 SDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPGL  260 (305)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l  260 (305)
                      ++|. +..+++           ..+..+++|++|+++++ .++.++... ..+++|+.|++++++..
T Consensus        84 ~~N~-l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           84 HENK-LQSLPN-----------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCC-ccccCH-----------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            9965 444443           24578899999999998 777777654 56899999999888543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=5.8e-11  Score=93.47  Aligned_cols=134  Identities=13%  Similarity=0.093  Sum_probs=83.3

Q ss_pred             ccccccccceeeccccceeeceEEEeeccccccccccccccCcc-CccceeEEEeecCcccccccccCCCccccceEEEE
Q 044279           44 GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLE-NIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV  122 (305)
Q Consensus        44 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l  122 (305)
                      .+..+.+|++|++++|.+.               .+ +.+..+. +|+.|++++  +....+   ...            
T Consensus        14 ~~~~~~~L~~L~l~~n~l~---------------~i-~~~~~~~~~L~~L~Ls~--N~l~~~---~~l------------   60 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP---------------VI-ENLGATLDQFDAIDFSD--NEIRKL---DGF------------   60 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC---------------SC-CCGGGGTTCCSEEECCS--SCCCEE---CCC------------
T ss_pred             hcCCcCCceEEEeeCCCCc---------------hh-HHhhhcCCCCCEEECCC--CCCCcc---ccc------------
Confidence            3566778888888888642               22 3344444 677777766  222221   110            


Q ss_pred             EcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC---cCCCCCCCCEEEEecccc
Q 044279          123 ASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK---WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       123 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~  199 (305)
                               ..+++|+.|++++|.++.++....     ..+++|+.|++++| .+++++   .+..+++|+.|++++|..
T Consensus        61 ---------~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           61 ---------PLLRRLKTLLVNNNRICRIGEGLD-----QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             ---------CCCSSCCEEECCSSCCCEECSCHH-----HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ---------ccCCCCCEEECCCCcccccCcchh-----hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence                     346778888888887777764442     56788888888888 666654   356778888888888664


Q ss_pred             ccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          200 LSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                       ..++...        ...+..+++|+.|+++++.
T Consensus       126 -~~~~~~~--------~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          126 -TNKKHYR--------LYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             -GGSTTHH--------HHHHHHCTTCSEETTEECC
T ss_pred             -CCcHhHH--------HHHHHHCCccceeCCCcCC
Confidence             3333200        0125677888888888773

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.11  E-value=2.1e-11  Score=116.75  Aligned_cols=111  Identities=19%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEee
Q 044279           19 PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCF   98 (305)
Q Consensus        19 p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~   98 (305)
                      |..+..+.+|+.|++++|.+..+|..+..+++|++|++++|.+               ..++..+..+++|+.|++++  
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l---------------~~lp~~~~~l~~L~~L~Ls~--  279 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL---------------TELPAEIKNLSNLRVLDLSH--  279 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC---------------SCCCGGGGGGTTCCEEECTT--
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC---------------cccChhhhCCCCCCEEeCcC--
Confidence            3445666666666666666666666666666666666666653               24555566666666666666  


Q ss_pred             cCcccccccccCCCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecce
Q 044279           99 VDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLES  149 (305)
Q Consensus        99 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~  149 (305)
                      +....++.   ...-..+|+.|+|+.|.++.++   ..+++|+.|++++|.++.
T Consensus       280 N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          280 NRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SCCSSCCS---SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CcCCccCh---hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            22222211   1111122555555544444444   445566666666666443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=4.6e-10  Score=97.32  Aligned_cols=99  Identities=15%  Similarity=0.046  Sum_probs=74.6

Q ss_pred             CCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccc-eeeccCcccCce
Q 044279          162 CFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLM-VIDLQHLPSLTS  238 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~  238 (305)
                      .+++|+.|+|.+| .++.++  .|..|++|+++++.++  ++.++.           ..+.++++|+ .+++.+  .++.
T Consensus       224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~  287 (329)
T 3sb4_A          224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTA  287 (329)
T ss_dssp             HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCE
T ss_pred             hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceE
Confidence            3789999999988 677765  5788999999999985  666665           3677899999 999988  6778


Q ss_pred             ecCC-CCCCCCCceEEeeCCCCCCCCCCCCccccCcCceE
Q 044279          239 ICCR-AVPLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI  277 (305)
Q Consensus       239 ~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i  277 (305)
                      ++.. ...+++|+.+.+.+. .++.++.+.-.-+..++.+
T Consensus       288 I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          288 IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred             EchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence            7654 447899999998544 6777766544433444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.08  E-value=3.8e-11  Score=114.93  Aligned_cols=152  Identities=14%  Similarity=0.076  Sum_probs=74.9

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccc-----cCCccccCCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNL-----SNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT   77 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l-----~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~   77 (305)
                      .++.|++.++ .+...+..+....+|..+.+     +.+.+...|..+..+++|++|++++|.+               .
T Consensus       174 ~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l---------------~  237 (727)
T 4b8c_D          174 LTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI---------------F  237 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCC---------------S
T ss_pred             ccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC---------------C
Confidence            3556677666 55555544333333433332     2233344455577788888888888773               3


Q ss_pred             cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCC
Q 044279           78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQ  157 (305)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  157 (305)
                      .++..+..+++|+.|++++  +....++..         +              ..+++|+.|++++|.++.+|..+   
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~--N~l~~lp~~---------~--------------~~l~~L~~L~Ls~N~l~~lp~~~---  289 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNG--NSLTELPAE---------I--------------KNLSNLRVLDLSHNRLTSLPAEL---  289 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTT--SCCSCCCGG---------G--------------GGGTTCCEEECTTSCCSSCCSSG---
T ss_pred             CCChhhcCCCCCCEEEeeC--CcCcccChh---------h--------------hCCCCCCEEeCcCCcCCccChhh---
Confidence            5555666777777777766  322221110         0              45778888888888877776554   


Q ss_pred             CcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccc
Q 044279          158 GRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSE  202 (305)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~  202 (305)
                         ..+++|++|+|++| .++.+| .+..+++|+.|+|++|.....
T Consensus       290 ---~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          290 ---GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             ---GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             ---cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCC
Confidence               56788888888888 666665 577788888888888765433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.08  E-value=6.3e-10  Score=88.81  Aligned_cols=125  Identities=17%  Similarity=0.087  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC-C-cCCCCCCCCEEEE
Q 044279          118 KRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL-K-WIRCAPNLQFLYV  194 (305)
Q Consensus       118 ~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l  194 (305)
                      +.++++.+.++.++ .-..+|+.|++++|.++.++....    +..+++|++|+|++| .++.+ + .+..+++|++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence            44555555566666 233478888888888777765311    267888999999888 66665 2 5777888999999


Q ss_pred             eccccccccccccCCCCCccccccccccCccceeeccCcccCcee-cCCCCCCCCCceEEeeCCCCC
Q 044279          195 SDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI-CCRAVPLPSLKTISVYDCPGL  260 (305)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l  260 (305)
                      ++|. +..+++           ..+..+++|++|+++++ .++.+ +.....+++|+.|++++++.-
T Consensus        86 s~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENK-IKEISN-----------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCC-CCEECS-----------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCc-CCccCH-----------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            8865 444443           24667888999999988 66655 445567888999999877543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.06  E-value=4.7e-12  Score=101.78  Aligned_cols=72  Identities=17%  Similarity=0.137  Sum_probs=49.0

Q ss_pred             cceEEEEEcCCCcccc--ccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCccC-Cc---------
Q 044279          116 CVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTDL-KW---------  182 (305)
Q Consensus       116 ~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~---------  182 (305)
                      +|+.|+++.|.++.++  ..+++|+.|++++|.+++++. ..     ...+++|++|++++| .++.. +.         
T Consensus        94 ~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~-----l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           94 TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK-----LAALDKLEDLLLAGN-PLYNDYKENNATSEYRI  167 (198)
T ss_dssp             HCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH-----HTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHH
T ss_pred             cCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHH-----HhcCCCCCEEEecCC-ccccccccccchHHHHH
Confidence            3555555544444444  567889999999998877654 22     267899999999998 44332 22         


Q ss_pred             --CCCCCCCCEEE
Q 044279          183 --IRCAPNLQFLY  193 (305)
Q Consensus       183 --~~~~~~L~~L~  193 (305)
                        +..+++|+.|+
T Consensus       168 ~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          168 EVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCSSCSEEC
T ss_pred             HHHHhCCCcEEEC
Confidence              56789999887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.04  E-value=7.6e-10  Score=87.01  Aligned_cols=61  Identities=13%  Similarity=0.088  Sum_probs=39.6

Q ss_pred             CCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEEeccccc
Q 044279          134 MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~  200 (305)
                      +++|+.|++++|.++.++....     ..+++|++|++++| .++.++.  +..+++|++|++++|...
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVF-----DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEEECCCCCccccCHHHh-----hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            5566666666666666554432     55677777777777 5555542  456777888888776643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=1.8e-11  Score=98.30  Aligned_cols=158  Identities=20%  Similarity=0.166  Sum_probs=105.7

Q ss_pred             hhcccccccccccCCccc-cCC------cccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeE
Q 044279           22 IGKLINLCHLNLSNTKIR-ELP------AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISI   94 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~-~lp------~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l   94 (305)
                      +.....++.++++.+.+. .+|      ..++.+++|++|++++|.+.               .++ .+..+++|+.|++
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---------------~l~-~~~~l~~L~~L~l   77 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---------------KIS-SLSGMENLRILSL   77 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---------------CCC-CHHHHTTCCEEEE
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---------------ccc-ccccCCCCCEEEC
Confidence            455567777777666554 333      37888999999999988742               233 7778888888888


Q ss_pred             EEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCC
Q 044279           95 TLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDC  174 (305)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~  174 (305)
                      ++|.  ...++.                       ....+++|+.|++++|.++.++ .+      ..+++|+.|++++|
T Consensus        78 ~~n~--l~~l~~-----------------------~~~~~~~L~~L~L~~N~l~~l~-~~------~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           78 GRNL--IKKIEN-----------------------LDAVADTLEELWISYNQIASLS-GI------EKLVNLRVLYMSNN  125 (198)
T ss_dssp             EEEE--ECSCSS-----------------------HHHHHHHCSEEEEEEEECCCHH-HH------HHHHHSSEEEESEE
T ss_pred             CCCC--cccccc-----------------------hhhcCCcCCEEECcCCcCCcCC-cc------ccCCCCCEEECCCC
Confidence            8732  111111                       0034688999999999988776 22      67899999999999


Q ss_pred             CCCccCC---cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279          175 HFMTDLK---WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL  230 (305)
Q Consensus       175 ~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  230 (305)
                       .++.++   .+..+++|++|++++|......+....  ........+..+++|+.|+-
T Consensus       126 -~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          126 -KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA--TSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             -ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT--HHHHHHHHHHHCSSCSEECC
T ss_pred             -cCCchhHHHHHhcCCCCCEEEecCCccccccccccc--hHHHHHHHHHhCCCcEEECC
Confidence             676653   477899999999999875333221000  00000123678999999873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.97  E-value=2.9e-08  Score=88.34  Aligned_cols=213  Identities=14%  Similarity=0.137  Sum_probs=133.4

Q ss_pred             cccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +|+.+.+..+  ++.++.. +.+ .+|+.+.+.. .+..++.. |.+|.+|+.+++..+.+               ..+.
T Consensus       136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---------------~~I~  196 (401)
T 4fdw_A          136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---------------TKLP  196 (401)
T ss_dssp             CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC---------------SEEC
T ss_pred             CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc---------------eEec
Confidence            4667777664  6666543 555 4688888865 56666544 77888899998887763               2333


Q ss_pred             ccccCccCccceeEEEeecCcccccccccC-CCccccceEEEEEcCCCcccc---ccCCCccEEEEeceecceecccccC
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSS-PKLQSCVKRLTVASPWFSSLD---FRMDHLETLEIVDCSLESINIYFGD  156 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~  156 (305)
                      .....+.+|+.+.+..  .    +..+... -..+.+|+.+.+.. .+..+.   ....+|+.+.+.. .++.++...  
T Consensus       197 ~~aF~~~~L~~l~lp~--~----l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~L~~i~lp~-~i~~I~~~a--  266 (401)
T 4fdw_A          197 ASTFVYAGIEEVLLPV--T----LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRESGITTVKLPN-GVTNIASRA--  266 (401)
T ss_dssp             TTTTTTCCCSEEECCT--T----CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTTCCCSEEEEET-TCCEECTTT--
T ss_pred             hhhEeecccCEEEeCC--c----hheehhhHhhCCCCCCEEecCC-CccCccccccccCCccEEEeCC-CccEEChhH--
Confidence            3333356777776643  1    1111111 11123477777752 233333   2226789999843 377777655  


Q ss_pred             CCcccCCCccceEeeeCCCCCc-----cC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279          157 QGRTYCFRNLRHLSVKDCHFMT-----DL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID  229 (305)
Q Consensus       157 ~~~~~~~~~L~~L~L~~~~~l~-----~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  229 (305)
                         +..+++|+.+++.++ ...     .+  ..|..|++|+.+.+.+  .++.+..           ..+.++++|+.+.
T Consensus       267 ---F~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~  329 (401)
T 4fdw_A          267 ---FYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLT  329 (401)
T ss_dssp             ---TTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEE
T ss_pred             ---hhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEE
Confidence               378899999999876 332     23  2577889999999885  2555554           3566889999999


Q ss_pred             ccCcccCceecCCCC-CCCCCceEEeeCCCCCCCCCC
Q 044279          230 LQHLPSLTSICCRAV-PLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       230 l~~~~~l~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      |..  +++.+..... .+ +|+.+.+.++ .+..++.
T Consensus       330 lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~  362 (401)
T 4fdw_A          330 IPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFE  362 (401)
T ss_dssp             ECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCC
T ss_pred             ECc--cccEEcHHhCCCC-CCCEEEEcCC-CCccccc
Confidence            954  4677765443 56 8999999766 4444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=3.9e-07  Score=80.98  Aligned_cols=203  Identities=8%  Similarity=0.073  Sum_probs=105.9

Q ss_pred             ccEEeCCCCCCccccchh-hhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ++.+.+...  ++.++.. +.++ +|+.+.+..+ +..++.. |.+ .+|+.+.+...-               ..--..
T Consensus       115 l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l---------------~~I~~~  174 (401)
T 4fdw_A          115 YNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTL---------------EQLKED  174 (401)
T ss_dssp             CSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTC---------------CEECSS
T ss_pred             ccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCc---------------cEehHH
Confidence            344444432  4555433 4443 5777776543 4444443 444 357777776521               112224


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCC
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQ  157 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~  157 (305)
                      .+..+.+|+.+.+..  +....+..   ..-.+.+|+++.+. +.+..+.    ..+++|+.+.+..+ ++.++...+  
T Consensus       175 aF~~c~~L~~l~l~~--n~l~~I~~---~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--  245 (401)
T 4fdw_A          175 IFYYCYNLKKADLSK--TKITKLPA---STFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--  245 (401)
T ss_dssp             TTTTCTTCCEEECTT--SCCSEECT---TTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--
T ss_pred             HhhCcccCCeeecCC--CcceEech---hhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccc--
Confidence            566677777776654  22222211   11112346666665 2233333    55667777777653 555654442  


Q ss_pred             CcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccc----cccccccCCCCCccccccccccCccceeecc
Q 044279          158 GRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVL----SEIIGTYESPGTSEIEESHHFLSNLMVIDLQ  231 (305)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  231 (305)
                         .. .+|+.+.+..+  ++.++  .|..|++|+.+.+.++...    ..++.           ..+.++++|+.+.|.
T Consensus       246 ---~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-----------~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          246 ---RE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-----------YCLEGCPKLARFEIP  308 (401)
T ss_dssp             ---TT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-----------TTTTTCTTCCEECCC
T ss_pred             ---cc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-----------HHhhCCccCCeEEeC
Confidence               33 56777777543  44442  4666777777777664321    11222           245567777777776


Q ss_pred             CcccCceecCCCC-CCCCCceEEe
Q 044279          232 HLPSLTSICCRAV-PLPSLKTISV  254 (305)
Q Consensus       232 ~~~~l~~~~~~~~-~~~~L~~L~l  254 (305)
                      .  +++.++.... .+++|+.+.+
T Consensus       309 ~--~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          309 E--SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             T--TCCEECTTTTTTCCSCCEEEE
T ss_pred             C--ceEEEhhhhhcCCCCccEEEE
Confidence            3  4666654433 4677777776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.78  E-value=2.7e-08  Score=77.94  Aligned_cols=99  Identities=25%  Similarity=0.252  Sum_probs=61.8

Q ss_pred             cEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccc
Q 044279          138 ETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEI  215 (305)
Q Consensus       138 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  215 (305)
                      +.++++++.++++|..+        .++|+.|+|++| .++.++  .+..+++|++|++++|. +..++.          
T Consensus        15 ~~l~~~~n~l~~iP~~~--------~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----------   74 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--------PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPT----------   74 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--------CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred             cEEEeCCCCCCccCCCc--------CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccCh----------
Confidence            45666666666666322        366777777777 555542  35667777777777754 444443          


Q ss_pred             cccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCC
Q 044279          216 EESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCP  258 (305)
Q Consensus       216 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~  258 (305)
                       ..+..+++|++|+++++ .++.++.. ...+++|+.|++++++
T Consensus        75 -~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           75 -GVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             -TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             -hHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence             23456777777777776 66666554 4467777777776663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.77  E-value=2.8e-08  Score=77.56  Aligned_cols=100  Identities=23%  Similarity=0.156  Sum_probs=59.4

Q ss_pred             ccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279          137 LETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE  214 (305)
Q Consensus       137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  214 (305)
                      .+.++++++.++.+|..+        .++|+.|+|++| .++.++  .+..+++|++|++++|. +..+++         
T Consensus        11 ~~~l~~s~n~l~~ip~~~--------~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~---------   71 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--------PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPA---------   71 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--------CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCT---------
T ss_pred             CCEEEeCCCCcCccCccC--------CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccCh---------
Confidence            455666666666665322        356677777776 555542  35566777777777654 444443         


Q ss_pred             ccccccccCccceeeccCcccCceecCC-CCCCCCCceEEeeCCC
Q 044279          215 IEESHHFLSNLMVIDLQHLPSLTSICCR-AVPLPSLKTISVYDCP  258 (305)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~  258 (305)
                        ..+..+++|++|+|+++ .++.++.. ...+++|+.|++++++
T Consensus        72 --~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           72 --GVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --hhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence              23456677777777776 56655543 3456777777776653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.74  E-value=2.6e-08  Score=77.76  Aligned_cols=100  Identities=18%  Similarity=0.096  Sum_probs=71.8

Q ss_pred             ceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEE
Q 044279          117 VKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLY  193 (305)
Q Consensus       117 L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~  193 (305)
                      .+.++++.+.++.++ .-.++|+.|++++|.++.++...+     ..+++|++|+|++| .++.++  .+..+++|++|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVF-----DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhh-----cCcccCCEEECCCC-CcCccChhhccCCCCCCEEE
Confidence            445555556666666 335778888888888877765442     67888999999888 677765  356788899999


Q ss_pred             EeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          194 VSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      +++|. +..+++           ..+..+++|++|+|++++
T Consensus        85 L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           85 LNDNQ-LKSIPR-----------GAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCSSC-CCCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred             CCCCc-cCEeCH-----------HHhcCCCCCCEEEeCCCC
Confidence            98865 444444           246778888999988873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.74  E-value=1.9e-10  Score=101.47  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=37.1

Q ss_pred             ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC------cCCCCCCCCEEEEecccc
Q 044279          132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK------WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~l~~~~~  199 (305)
                      ...++|++|++++|.+++.+......+ ....++|++|+|++| .+++..      .+...++|++|++++|..
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            345667777777777555442211000 134567777777777 555421      223456777777777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.74  E-value=3.1e-08  Score=77.64  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCc--CCCCCCCCEEEE
Q 044279          118 KRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKW--IRCAPNLQFLYV  194 (305)
Q Consensus       118 ~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l  194 (305)
                      +.++++.+.++.++ .-.++|+.|++++|.++.++...+     ..+++|++|+|++| .++.++.  +..+++|++|++
T Consensus        15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVF-----DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHh-----cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEEC
Confidence            34555555566666 334788888888888777765442     67888999999888 7777653  567888999999


Q ss_pred             eccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          195 SDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      ++|. +..+++           ..+..+++|++|++++++
T Consensus        89 ~~N~-l~~l~~-----------~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           89 NDNH-LKSIPR-----------GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CSSC-CCCCCT-----------TTTTTCTTCSEEECCSSC
T ss_pred             CCCc-cceeCH-----------HHhccccCCCEEEeCCCC
Confidence            8865 444444           246778888889888873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.70  E-value=6.9e-09  Score=80.76  Aligned_cols=86  Identities=15%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             CccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC--CcCCC----CCCCCEEEEeccccccccccccCC
Q 044279          136 HLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL--KWIRC----APNLQFLYVSDCQVLSEIIGTYES  209 (305)
Q Consensus       136 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~  209 (305)
                      .|+.|++++|.+++.+....     ..+++|++|+|++|..+++.  ..+..    +++|++|+|++|..+++...    
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl----  132 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM-----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI----  132 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG-----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH----
T ss_pred             eEeEEeCcCCCccHHHHHHh-----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH----
Confidence            35555555555444443332     34555555555555545542  12222    23455555555554433221    


Q ss_pred             CCCccccccccccCccceeeccCcccCc
Q 044279          210 PGTSEIEESHHFLSNLMVIDLQHLPSLT  237 (305)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~  237 (305)
                             ..+..+++|++|+|++|+.++
T Consensus       133 -------~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 -------IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             -------HHGGGCTTCCEEEEESCTTCC
T ss_pred             -------HHHhcCCCCCEEECCCCCCCC
Confidence                   123345555555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=3.1e-08  Score=77.10  Aligned_cols=88  Identities=10%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             CCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccc----cCccceeeccCcccC
Q 044279          163 FRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHF----LSNLMVIDLQHLPSL  236 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l  236 (305)
                      -.+|++||+++|. +++.  ..+..|++|++|+|++|..+++...           ..+..    .++|++|+|++|+.+
T Consensus        60 ~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           60 KYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             CCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             CceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcC
Confidence            3569999999994 7664  4567899999999999998865432           12333    358999999999988


Q ss_pred             ceecCC-CCCCCCCceEEeeCCCCCCC
Q 044279          237 TSICCR-AVPLPSLKTISVYDCPGLRK  262 (305)
Q Consensus       237 ~~~~~~-~~~~~~L~~L~l~~c~~l~~  262 (305)
                      ++-... ...+++|+.|++++|+.++.
T Consensus       128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          128 TDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            752211 23689999999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.56  E-value=1.2e-09  Score=96.23  Aligned_cols=112  Identities=15%  Similarity=0.110  Sum_probs=73.7

Q ss_pred             cceEEEEEcCCCcccc---------ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC------
Q 044279          116 CVKRLTVASPWFSSLD---------FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL------  180 (305)
Q Consensus       116 ~L~~L~l~~~~~~~~~---------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~------  180 (305)
                      +|++|+++.|.+++..         ...+.|+.|++++|.+++.+......+ ....++|++|+|++| .+++.      
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N-~l~~~g~~~L~  204 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHT-GLGDEGLELLA  204 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTS-SCHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCC-CCCcHHHHHHH
Confidence            4777777755555433         246789999999998766543321100 145788999999999 66653      


Q ss_pred             CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279          181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS  238 (305)
Q Consensus       181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  238 (305)
                      ..+...++|++|++++|.. ......       .+...+...++|++|+|++| .++.
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i-~~~g~~-------~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGA-GDTAAL-------ALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCC-CHHHHH-------HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             HHHhcCCCcCeEECCCCCC-CHHHHH-------HHHHHHHhCCCCCEEeccCC-CCCH
Confidence            2345678999999999864 322110       01124557799999999999 5553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.39  E-value=1.8e-07  Score=81.92  Aligned_cols=161  Identities=12%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             ccchhhhcccccccccccCCccc----------cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCc
Q 044279           17 ELPEAIGKLINLCHLNLSNTKIR----------ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESL   86 (305)
Q Consensus        17 ~lp~~~~~l~~L~~L~l~~~~l~----------~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l   86 (305)
                      .+...+.++++|+.|.+......          .+...+..+++|+.|.++++.               ...++. + .+
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~---------------~l~l~~-~-~~  192 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---------------NLSIGK-K-PR  192 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB---------------TCBCCS-C-BC
T ss_pred             HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC---------------Cceecc-c-cC
Confidence            34555677888888877543221          233335667889999988763               112222 3 37


Q ss_pred             cCccceeEEEeecCcccccccccCCCccccceEEEEE-cCC-------Ccccc-----ccCCCccEEEEeceecceeccc
Q 044279           87 ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPW-------FSSLD-----FRMDHLETLEIVDCSLESINIY  153 (305)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~-------~~~~~-----~~~~~L~~L~l~~~~l~~~~~~  153 (305)
                      ++|+.|.+..+......+..+..  ...++|++|+|+ +..       +..+.     ..+++|+.|++.+|.+.+....
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            78888888764333223323321  112448888886 211       11111     3578999999999885543221


Q ss_pred             ccCCCcccCCCccceEeeeCCCCCccC-----C-cCCCCCCCCEEEEecccc
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCHFMTDL-----K-WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~-----~-~~~~~~~L~~L~l~~~~~  199 (305)
                      ....  ...+++|++|+|+.| .+++.     . .+..+++|+.|++++|..
T Consensus       271 ~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          271 MFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            1100  135789999999988 67662     1 224579999999999763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.39  E-value=7.5e-07  Score=77.44  Aligned_cols=89  Identities=20%  Similarity=0.128  Sum_probs=57.8

Q ss_pred             CCcccc--ccCCCccEEEEec-eecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccc
Q 044279          126 WFSSLD--FRMDHLETLEIVD-CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVL  200 (305)
Q Consensus       126 ~~~~~~--~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~  200 (305)
                      .++.+|  ..+.+|+.|+|++ |.++.++...+     ..+++|+.|+|++| .++.++  .+..+++|++|+|++|. +
T Consensus        20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~-----~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l   92 (347)
T 2ifg_A           20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-L   92 (347)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-C
T ss_pred             CCCccCCCCCCCCeeEEEccCCCCCCCcChhHh-----ccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-c
Confidence            455555  4556678888875 66777775542     66788888888887 666653  45677888888888854 4


Q ss_pred             cccccccCCCCCccccccccccCccceeeccCc
Q 044279          201 SEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                      ..+++           ..+..++ |+.|+|.++
T Consensus        93 ~~~~~-----------~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           93 ESLSW-----------KTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             SCCCS-----------TTTCSCC-CCEEECCSS
T ss_pred             ceeCH-----------HHcccCC-ceEEEeeCC
Confidence            44444           1223333 788888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.33  E-value=2.5e-07  Score=81.05  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=64.7

Q ss_pred             ccceEEEEEcC-CCccccccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCC-------CCccCC-cC--
Q 044279          115 SCVKRLTVASP-WFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH-------FMTDLK-WI--  183 (305)
Q Consensus       115 ~~L~~L~l~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------~l~~~~-~~--  183 (305)
                      ++|++|.++.+ .+.-.+...++|+.|++..|.++........   ...+++|++|+|+.+.       .+..+. .+  
T Consensus       172 P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~---~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDIL---GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHH---HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHH---HccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            34666666522 1111112256677777766654433322110   1246777777765310       121221 11  


Q ss_pred             CCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce-----ecCCCCCCCCCceEEeeCC
Q 044279          184 RCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS-----ICCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       184 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c  257 (305)
                      ..+|+|+.|++.+|..........         ...+.+++|++|+|+.+ .++.     +......+++|+.|++++|
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~l---------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMF---------LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHH---------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHH---------HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence            246778888777765432221100         01235677888888766 4543     2222234677788887766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.28  E-value=9.3e-07  Score=76.86  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=44.7

Q ss_pred             EeCCCCCCccccchhhhcccccccccccC-CccccCCc-ccccccccceeeccccceeeceEEEeecccccccccccccc
Q 044279            7 LDLSYNFDLVELPEAIGKLINLCHLNLSN-TKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE   84 (305)
Q Consensus         7 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~   84 (305)
                      ++.+++..+..+|. +..+.+|++|+|++ |.+..+|. .++.+++|++|+|++|.+.              ...+..+.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--------------~~~~~~~~   77 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------------FVAPDAFH   77 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--------------EECTTGGG
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--------------eeCHHHhc
Confidence            45555434566666 66666666666664 66666553 3666666777776666642              22233456


Q ss_pred             CccCccceeEEE
Q 044279           85 SLENIHDISITL   96 (305)
Q Consensus        85 ~l~~L~~L~l~~   96 (305)
                      .+++|+.|++++
T Consensus        78 ~l~~L~~L~l~~   89 (347)
T 2ifg_A           78 FTPRLSRLNLSF   89 (347)
T ss_dssp             SCSCCCEEECCS
T ss_pred             CCcCCCEEeCCC
Confidence            666666666666

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.17  E-value=6.4e-05  Score=66.47  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=25.0

Q ss_pred             hhhcccccccccccCCccccCCcc-cccccccceeecccc
Q 044279           21 AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVF   59 (305)
Q Consensus        21 ~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~   59 (305)
                      .+.++.+|+.+.+..+ +..++.. +.++.+|+.+.+..+
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence            4677778888877543 3334433 667778888887665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.01  E-value=6e-05  Score=66.62  Aligned_cols=206  Identities=12%  Similarity=0.042  Sum_probs=117.4

Q ss_pred             CCcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCc-ccccccccceeeccccceeeceEEEeecccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      |++|+.+.+..+  +..++. .+.++.+|+.+.+..+ ++.++. .+..+..|+.+.+..+..                .
T Consensus       161 c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~----------------~  221 (394)
T 4fs7_A          161 CESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY----------------Y  221 (394)
T ss_dssp             CTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC----------------E
T ss_pred             cCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce----------------E
Confidence            567888888765  456654 4788999999998664 444443 377888999998877642                2


Q ss_pred             ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCC--Ccccc-ccCCCccEEEEeceecceeccccc
Q 044279           79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPW--FSSLD-FRMDHLETLEIVDCSLESINIYFG  155 (305)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~  155 (305)
                      +.........|+.+.+..  . ...+..  ..-..+..++.+.+..+.  +.... ..+..++.+.+....   ++... 
T Consensus       222 i~~~~~~~~~l~~i~ip~--~-~~~i~~--~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~-  292 (394)
T 4fs7_A          222 LGDFALSKTGVKNIIIPD--S-FTELGK--SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKT-  292 (394)
T ss_dssp             ECTTTTTTCCCCEEEECT--T-CCEECS--STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTT-
T ss_pred             eehhhcccCCCceEEECC--C-ceeccc--ccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccc-
Confidence            223334445666665532  1 111110  011122336666665221  11111 556666666655432   22222 


Q ss_pred             CCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          156 DQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       156 ~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                          +..+.+|+.+.+..+  ++.++  .+..|.+|+.+++...  ++.+..           ..+.++.+|+.+.+...
T Consensus       293 ----F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 ----FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK-----------RSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             ----TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCTTCCEECCCTT
T ss_pred             ----ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH-----------HhccCCCCCCEEEECcc
Confidence                356777888877653  44442  4667778888877542  444443           24567778888877543


Q ss_pred             ccCceecCCC-CCCCCCceEEee
Q 044279          234 PSLTSICCRA-VPLPSLKTISVY  255 (305)
Q Consensus       234 ~~l~~~~~~~-~~~~~L~~L~l~  255 (305)
                        ++.+.... ..|++|+.+.+.
T Consensus       354 --l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          354 --LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             --CCEECTTTBTTCTTCCEEEEE
T ss_pred             --ccEehHHHhhCCCCCCEEEEC
Confidence              56665433 356777777774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=1.2e-06  Score=69.22  Aligned_cols=119  Identities=11%  Similarity=0.030  Sum_probs=69.8

Q ss_pred             hhhcccccccccccCC-ccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeE
Q 044279           21 AIGKLINLCHLNLSNT-KIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISI   94 (305)
Q Consensus        21 ~~~~l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l   94 (305)
                      .+...++|++|++++| .+.     .+...+...++|++|++++|.+.+          .....+...+...++|+.|++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~----------~g~~~l~~~L~~n~~L~~L~L  100 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND----------PVAFALAEMLKVNNTLKSLNV  100 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH----------HHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh----------HHHHHHHHHHHhCCCcCEEEC
Confidence            3566677777777777 664     233445566777888887776532          001123344555567777777


Q ss_pred             EEeecCcccccccccCCCccccceEEEE--EcCCCcccc--------ccCCCccEEEEeceecce
Q 044279           95 TLCFVDTHAFCRFQSSPKLQSCVKRLTV--ASPWFSSLD--------FRMDHLETLEIVDCSLES  149 (305)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l--~~~~~~~~~--------~~~~~L~~L~l~~~~l~~  149 (305)
                      ++|.........+.........|++|++  +++.+++..        ...+.|+.|++++|.+..
T Consensus       101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            7743332222223333233344888888  566665432        556789999999887543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.4e-05  Score=66.69  Aligned_cols=57  Identities=35%  Similarity=0.362  Sum_probs=27.3

Q ss_pred             CcccEEeCCCCCCcccc---chhhhcccccccccccCCccccCCccccccc--ccceeeccccc
Q 044279            2 HALAVLDLSYNFDLVEL---PEAIGKLINLCHLNLSNTKIRELPAGIKYLK--NLKILRLDVFS   60 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~   60 (305)
                      ++|+.|+|++| .+..+   |..+..+++|+.|+|++|++..+ ..+..++  +|++|++.+|+
T Consensus       170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred             CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence            45555555555 44332   23344555555555555555443 2233333  55555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.74  E-value=1.7e-06  Score=68.35  Aligned_cols=121  Identities=13%  Similarity=-0.024  Sum_probs=73.6

Q ss_pred             cccccccccceeecccc-ceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEE
Q 044279           43 AGIKYLKNLKILRLDVF-SWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLT  121 (305)
Q Consensus        43 ~~~~~l~~L~~L~l~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~  121 (305)
                      ..+...++|++|++++| .+.+          .....+...+...++|+.|++++|.........+.......+.|++|+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~----------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~   99 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPV----------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN   99 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCH----------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             HHHhcCCCCCEEEecCCCCCCH----------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence            34567788999999888 6532          012234455667788888888884322222222322222234588898


Q ss_pred             EEcCCCcccc--------ccCCCccEEEE--eceecceecccccCCCcccCCCccceEeeeCC
Q 044279          122 VASPWFSSLD--------FRMDHLETLEI--VDCSLESINIYFGDQGRTYCFRNLRHLSVKDC  174 (305)
Q Consensus       122 l~~~~~~~~~--------~~~~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~  174 (305)
                      ++.|.+++..        ...+.|++|++  ++|.+.+.+....... ....++|++|+|++|
T Consensus       100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCS
T ss_pred             CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCC
Confidence            8877776532        55677999999  6677655443221100 244578999999888

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.74  E-value=0.0024  Score=56.29  Aligned_cols=98  Identities=21%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             cCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCce
Q 044279          161 YCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS  238 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  238 (305)
                      ..+.+|+.+.+...  +..+  ..+..++.|+.+.+..  .+..++.           ..+.++.+|+.+.|..  +++.
T Consensus       262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-----------~aF~~c~~L~~i~lp~--~v~~  324 (394)
T 4gt6_A          262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPE-----------SVFAGCISLKSIDIPE--GITQ  324 (394)
T ss_dssp             TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECT-----------TTTTTCTTCCEEECCT--TCCE
T ss_pred             eecccccEEecccc--cceecCcccccccccccccCCC--cccccCc-----------eeecCCCCcCEEEeCC--cccE
Confidence            45566666666543  1222  2355666677766643  2333433           2455677777777754  3555


Q ss_pred             ecCCCC-CCCCCceEEeeCCCCCCCCCCCCccccCcCceE
Q 044279          239 ICCRAV-PLPSLKTISVYDCPGLRKLPLNSGSAKNSLNAI  277 (305)
Q Consensus       239 ~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~i  277 (305)
                      +..... .|.+|+.+.+.  ..++.+....-.-+.+++.|
T Consensus       325 I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          325 ILDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             ECTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEE
T ss_pred             ehHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEE
Confidence            544333 56777777773  23555544333333333433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.64  E-value=0.0016  Score=57.47  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCC
Q 044279          132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYES  209 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~  209 (305)
                      ..+..|+.+.+... +..++...     +..+.+|+.+.+..  .++.++  .|..|.+|+.+.+..+  ++.+..    
T Consensus       262 ~~c~~L~~i~lp~~-~~~I~~~a-----F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~----  327 (394)
T 4gt6_A          262 DSCAYLASVKMPDS-VVSIGTGA-----FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILD----  327 (394)
T ss_dssp             TTCSSCCEEECCTT-CCEECTTT-----TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECT----
T ss_pred             eecccccEEecccc-cceecCcc-----cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehH----
Confidence            45677777777543 34444433     35677788887754  344443  4667788888877652  444443    


Q ss_pred             CCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeC
Q 044279          210 PGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYD  256 (305)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~  256 (305)
                             ..+.++.+|+.+.|-.  +++.+.... ..|++|+.+.+.+
T Consensus       328 -------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          328 -------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             -------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             -------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence                   2456777888887753  355554332 3577777777754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.43  E-value=2.4e-05  Score=65.18  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             CCCccceEeeeCCCCCccCCcC----CCCCCCCEEEEeccc
Q 044279          162 CFRNLRHLSVKDCHFMTDLKWI----RCAPNLQFLYVSDCQ  198 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~~~~~----~~~~~L~~L~l~~~~  198 (305)
                      .+++|+.|+|++| .++.++.+    ..+++|+.|+|++|.
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc
Confidence            4555666666655 44443322    245566666665544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.18  E-value=0.021  Score=49.76  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=15.5

Q ss_pred             ccccCccceeeccCcccCceecCCC-CCCCCCceEEe
Q 044279          219 HHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISV  254 (305)
Q Consensus       219 ~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l  254 (305)
                      +.++++|+.+.+.++ .++.++... ..+.+|+.+.+
T Consensus       282 F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          282 CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccc-ccceehhhhhcCCCCCCEEEc
Confidence            334555555555443 344443322 23445555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.66  E-value=0.066  Score=46.54  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCC
Q 044279          132 FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYES  209 (305)
Q Consensus       132 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~  209 (305)
                      ..+..|+.+.+..+ ++.++...     +..+.+|+.+.+...  ++.++  .+..|.+|+.+.+.++ .++.+..    
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~a-----F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~----  303 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFL-----LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEP----  303 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTT-----TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECT----
T ss_pred             cCCccceEEEcCCC-ccEeCccc-----cceeehhcccccccc--ceecccccccccccccccccccc-ccceehh----
Confidence            55677888887654 66666554     366778888888653  44432  5667888888888763 3444444    


Q ss_pred             CCCccccccccccCccceeeccCcccCceecCCCC-CCCCCceEEe
Q 044279          210 PGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV-PLPSLKTISV  254 (305)
Q Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l  254 (305)
                             ..+.++.+|+.+.|..  +++.+..... .+++|+.+.+
T Consensus       304 -------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          304 -------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             -------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             -------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence                   2456778888888854  3566654432 4566666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.09  E-value=0.0064  Score=44.58  Aligned_cols=54  Identities=26%  Similarity=0.515  Sum_probs=43.5

Q ss_pred             cEEeCCCCCCcc--ccchhhhcccccccccccCCccccCCcc-cccccccceeeccccce
Q 044279            5 AVLDLSYNFDLV--ELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSW   61 (305)
Q Consensus         5 ~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~   61 (305)
                      .+++.+++ .++  .+|..+.  .+|++|+|++|++..+|.+ +..+++|++|++.+|..
T Consensus        11 ~~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            35777787 777  8885432  3689999999999999876 78899999999999974

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.91  E-value=0.0043  Score=48.93  Aligned_cols=111  Identities=13%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             cccccccccCC-ccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeec
Q 044279           26 INLCHLNLSNT-KIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFV   99 (305)
Q Consensus        26 ~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   99 (305)
                      ..|++|+++++ .+.     .+-..++.-+.|++|++++|.+-+          .....+...+..-+.|+.|++.++..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----------~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----------SEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----------HHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----------HHHHHHHHHHhcCCccCeEecCCCcC
Confidence            45555565553 432     122234444556666666655421          00112223333444556666555332


Q ss_pred             CcccccccccCCCccccceEEEEEc--C-CCcccc--------ccCCCccEEEEecee
Q 044279          100 DTHAFCRFQSSPKLQSCVKRLTVAS--P-WFSSLD--------FRMDHLETLEIVDCS  146 (305)
Q Consensus       100 ~~~~~~~l~~~~~~~~~L~~L~l~~--~-~~~~~~--------~~~~~L~~L~l~~~~  146 (305)
                      .......+.........|++|+++.  + .+.+..        ..-+.|..|+++.+.
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            2222233333322233366666652  1 222211        445567777776554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.35  E-value=0.063  Score=39.15  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             CcccEEeCCCCCCccccchh-hhcccccccccccCCccc
Q 044279            2 HALAVLDLSYNFDLVELPEA-IGKLINLCHLNLSNTKIR   39 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~   39 (305)
                      ++|++|+|++| .++.+|.. +..+.+|++|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            37999999999 99999865 788999999999998664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.08  E-value=0.022  Score=44.78  Aligned_cols=119  Identities=8%  Similarity=-0.023  Sum_probs=62.6

Q ss_pred             cccccccceeecccc-ceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE
Q 044279           45 IKYLKNLKILRLDVF-SWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA  123 (305)
Q Consensus        45 ~~~l~~L~~L~l~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~  123 (305)
                      +..-+.|++|+++++ .+.+          .....+...+..-+.|+.|++++|.........+.........|++|+|+
T Consensus        37 l~~n~~L~~L~L~~nn~igd----------~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSK----------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCH----------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HhcCCCccEEECCCCCCCCH----------HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence            344567888888764 4321          01123445556666788888877433333333333333333448888888


Q ss_pred             cCCCcccc--------ccCCCccEEEEecee---cceecccccCCCcccCCCccceEeeeCC
Q 044279          124 SPWFSSLD--------FRMDHLETLEIVDCS---LESINIYFGDQGRTYCFRNLRHLSVKDC  174 (305)
Q Consensus       124 ~~~~~~~~--------~~~~~L~~L~l~~~~---l~~~~~~~~~~~~~~~~~~L~~L~L~~~  174 (305)
                      .|.+++..        .....|++|+++++.   +.+......... ...-+.|++|+++.+
T Consensus       107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFA  167 (197)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCC
T ss_pred             CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCC
Confidence            77666544        445568888887542   221110000000 134567788887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 43/271 (15%), Positives = 79/271 (29%), Gaps = 10/271 (3%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF- 62
              L+L+    L  LPE      +L  L  S   + ELP   + LK+L +   ++ +   
Sbjct: 40  AHELELNNL-GLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 63  ---STELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKR 119
                E + + +N       L     L+ I   + +L  +          +       + 
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 120 LTVASPWFSSLDFRMDHLETLEIVDCSLESINIY-FGDQGRTYCFRNLRHLSVKDCHFMT 178
             + +  F +  +  ++               +            +NL  L+        
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 179 DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTS 238
                   P+L+ L V D  +                E     LS L         S   
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 239 ICCRAVPLPSLKTISVYDCPGLRKLPLNSGS 269
           I       PSL+ ++V +   L +LP     
Sbjct: 276 IRSLCDLPPSLEELNVSNN-KLIELPALPPR 305

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKI 53
           L  L  S+N  L E+PE      NL  L++    +RE P   + +++L++
Sbjct: 306 LERLIASFN-HLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 21/208 (10%)

Query: 25  LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE 84
           L  +  L+   T +  +  G++YL NL  L L          +               L+
Sbjct: 40  LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 85  SLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVD 144
           ++  I  +        T       +     S ++ L +     +++              
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-----TNL 153

Query: 145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEII 204
             L   N    D         L  L   D    +D+  +   PNL  +++ + Q +S++ 
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQ-ISDVS 211

Query: 205 GTYESPGTSEIEESHHFLSNLMVIDLQH 232
                             SNL ++ L +
Sbjct: 212 -------------PLANTSNLFIVTLTN 226

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 20/173 (11%)

Query: 4   LAVLDLSYNFDLVE-LPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWF 62
              ++L      +E +   +  L    HL LS   I ++   +  ++NL+IL L      
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK 83

Query: 63  STELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTV 122
             E +    +      +     +  +  +  + L  +                      +
Sbjct: 84  KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK----------------I 127

Query: 123 ASPWFSSLDFRMDHLETLEIVDCSLESI--NIYFGDQGRTYCFRNLRHLSVKD 173
            +         +D LE L +    L +         + R    + L +L   D
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 12/238 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  L  L L  N      P A   L+ L  L LS  +++ELP  +        +  +  +
Sbjct: 54  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 113

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRL 120
                +    +           L+S    +     +  +          +   Q     L
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 173

Query: 121 TVASPWFSSLDFR----MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHF 176
           T      + +       +  L  L  +  S    +I   D G      +LR L + +   
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLS--FNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 177 MTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP 234
           +     +     +Q +Y+ +   +S I               +   ++   + L   P
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNN-ISAI-----GSNDFCPPGYNTKKASYSGVSLFSNP 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 34/249 (13%), Positives = 81/249 (32%), Gaps = 13/249 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFS 60
           +  +  L       +  + + +  L NL  +N SN ++ ++   +K L  L  + ++   
Sbjct: 43  LDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 99

Query: 61  WFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRL 120
                 +A   N    T       + +      +              +   + +     
Sbjct: 100 IADITPLANLTNLTGLTL-----FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 121 TVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL 180
           ++    F +    +  L  L  ++    S N                 L   +    +D+
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL-ESLIATNNQI-SDI 212

Query: 181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSIC 240
             +    NL  L ++  Q L +I         ++++ +++ +SNL    L  L  LT + 
Sbjct: 213 TPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELK 269

Query: 241 CRAVPLPSL 249
             A  + ++
Sbjct: 270 LGANQISNI 278

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 1   MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLD 57
           +  L  L  + N   V    ++  L N+  L+  + +I +L   +  L  +  L L+
Sbjct: 328 LTKLQRLFFANNK--VSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN 381

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 2/130 (1%)

Query: 4   LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFS 63
              LDL     +  +      L     ++ S+ +IR+L  G   L+ LK L ++      
Sbjct: 20  DRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICR 77

Query: 64  TELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA 123
                          +L     +E      +      T+           +     +   
Sbjct: 78  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 137

Query: 124 SPWFSSLDFR 133
            P    LDF+
Sbjct: 138 VPQVRVLDFQ 147

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 19/214 (8%)

Query: 2   HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRE--LPAGIKYLKNLKILRLDVF 59
             +       +F + +          + H++LSN+ I    L   +     L+ L L+  
Sbjct: 23  QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 60  SWFS---------TELVALHHNFCCATTVLAGLE---SLENIHDISITLCFVDTHAFCRF 107
                        + LV L+ + C   +  A      S   + +++++ CF  T    + 
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 108 QSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTY--CFRN 165
             +   ++  +                  +     +     S ++   +           
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 166 LRHLSVKDCHFMTD--LKWIRCAPNLQFLYVSDC 197
           L+HLS+  C+ +    L  +   P L+ L V   
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 7/168 (4%)

Query: 25  LINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE 84
           L  +  L      I+ +  G++YL NL  +            +               + 
Sbjct: 39  LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 97

Query: 85  SLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVD 144
            +  + +++        +         K  + + RL ++S   S +          ++  
Sbjct: 98  DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 157

Query: 145 CSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFL 192
            S +  ++             L  L +      +D+  +    NL+ L
Sbjct: 158 SSNQVTDLKPLAN-----LTTLERLDISSNKV-SDISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.18
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.95
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.66
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.6
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=4.6e-19  Score=151.25  Aligned_cols=228  Identities=14%  Similarity=0.107  Sum_probs=124.9

Q ss_pred             cccEEeCCCCCCcc---ccchhhhcccccccccccC-Cccc-cCCcccccccccceeeccccceeeceEEEeeccccccc
Q 044279            3 ALAVLDLSYNFDLV---ELPEAIGKLINLCHLNLSN-TKIR-ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCAT   77 (305)
Q Consensus         3 ~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~-~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~   77 (305)
                      +++.|+++++ .+.   .+|+.++++++|++|++++ |++. .+|..|+++++|++|++++|.+..              
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~--------------  115 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc--------------
Confidence            5788999998 554   5788999999999999987 5676 899999999999999999998643              


Q ss_pred             cccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCc-ccc---ccCCC-ccEEEEeceecceecc
Q 044279           78 TVLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFS-SLD---FRMDH-LETLEIVDCSLESINI  152 (305)
Q Consensus        78 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~-L~~L~l~~~~l~~~~~  152 (305)
                      ..+..+..+.+|+.+++..+.........+.....    ++.++++.+.+. .++   ..+.. ++.++++.|.++....
T Consensus       116 ~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~----L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN----LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT----CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             cccccccchhhhcccccccccccccCchhhccCcc----cceeecccccccccccccccccccccccccccccccccccc
Confidence            22233444455555554442111111112222221    444444432222 111   22222 2344444443332221


Q ss_pred             cccC------------------CCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279          153 YFGD------------------QGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE  214 (305)
Q Consensus       153 ~~~~------------------~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  214 (305)
                      ....                  ......+++++.+++.++.....++.+..+++|+.|++++|.....+|.         
T Consensus       192 ~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~---------  262 (313)
T d1ogqa_         192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ---------  262 (313)
T ss_dssp             GGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG---------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCCh---------
Confidence            1100                  0001345666666666663333344555566666666666554334443         


Q ss_pred             ccccccccCccceeeccCcccCc-eecCCCCCCCCCceEEeeCCCCCCCC
Q 044279          215 IEESHHFLSNLMVIDLQHLPSLT-SICCRAVPLPSLKTISVYDCPGLRKL  263 (305)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~  263 (305)
                         .++.+++|++|+|++| .++ .+|. ...+++|+.+++++++.+...
T Consensus       263 ---~l~~L~~L~~L~Ls~N-~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         263 ---GLTQLKFLHSLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ---GGGGCTTCCEEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ---HHhCCCCCCEEECcCC-cccccCCC-cccCCCCCHHHhCCCccccCC
Confidence               5566666666666666 444 4442 345566666666666544443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.4e-17  Score=145.41  Aligned_cols=125  Identities=14%  Similarity=0.200  Sum_probs=79.5

Q ss_pred             cceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCC------------------
Q 044279          116 CVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCH------------------  175 (305)
Q Consensus       116 ~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~------------------  175 (305)
                      +|++|+++.+.+.+++  ..+++|+.+++++|.+++++.       ...+++|++|+++++.                  
T Consensus       220 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             CCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc-------ccccccCCEeeccCcccCCCCccccccccccccc
Confidence            4666666655555544  556666666666666554432       1345556666665551                  


Q ss_pred             ---CCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceE
Q 044279          176 ---FMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTI  252 (305)
Q Consensus       176 ---~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  252 (305)
                         .+++++.+..+++++.|++++|. ++.++             .+..+++|+.|++++| .++.++. ...+++|++|
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~-l~~l~-------------~l~~l~~L~~L~L~~n-~l~~l~~-l~~l~~L~~L  356 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNN-ISDIS-------------PVSSLTKLQRLFFANN-KVSDVSS-LANLTNINWL  356 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSC-CSCCG-------------GGGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEE
T ss_pred             cccccccccccchhcccCeEECCCCC-CCCCc-------------ccccCCCCCEEECCCC-CCCCChh-HcCCCCCCEE
Confidence               22333334456778888888764 33332             2567899999999999 7777764 5678999999


Q ss_pred             EeeCCCCCCCCC
Q 044279          253 SVYDCPGLRKLP  264 (305)
Q Consensus       253 ~l~~c~~l~~~~  264 (305)
                      ++++| +++.++
T Consensus       357 ~l~~N-~l~~l~  367 (384)
T d2omza2         357 SAGHN-QISDLT  367 (384)
T ss_dssp             ECCSS-CCCBCG
T ss_pred             ECCCC-cCCCCh
Confidence            99766 666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.4e-17  Score=138.93  Aligned_cols=221  Identities=16%  Similarity=0.126  Sum_probs=137.4

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCC-cccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELP-AGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++++|++++| .++++|+ .+.++++|++|++++|.+..++ ..+..+++|++|++++|++.               .+
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~---------------~l   94 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK---------------EL   94 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS---------------BC
T ss_pred             CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC---------------cC
Confidence            45677777777 6777765 4677777777777777776653 34777777777777777632               22


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc------ccCCCccEEEEeceecceeccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD------FRMDHLETLEIVDCSLESINIY  153 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~L~~L~l~~~~l~~~~~~  153 (305)
                      +..+  ...++.|....  +....+......  .....+.+....+......      ..+++|+.+++++|.+..++. 
T Consensus        95 ~~~~--~~~l~~L~~~~--n~l~~l~~~~~~--~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-  167 (305)
T d1xkua_          95 PEKM--PKTLQELRVHE--NEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-  167 (305)
T ss_dssp             CSSC--CTTCCEEECCS--SCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-
T ss_pred             ccch--hhhhhhhhccc--cchhhhhhhhhh--ccccccccccccccccccCCCccccccccccCccccccCCccccCc-
Confidence            2221  12344444433  222222111100  0112444444422211111      566778888888887766652 


Q ss_pred             ccCCCcccCCCccceEeeeCCCCCccC-CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCHFMTDL-KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH  232 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (305)
                             ..+++|++|++++|...... ..+..+++++.|++++|. +..+++           ..+.++++|++|+|++
T Consensus       168 -------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~-----------~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         168 -------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-----------GSLANTPHLRELHLNN  228 (305)
T ss_dssp             -------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT-----------TTGGGSTTCCEEECCS
T ss_pred             -------ccCCccCEEECCCCcCCCCChhHhhcccccccccccccc-cccccc-----------ccccccccceeeeccc
Confidence                   34678888888888433333 356778888888888864 444443           3567889999999999


Q ss_pred             cccCceecCCCCCCCCCceEEeeCCCCCCCCCCC
Q 044279          233 LPSLTSICCRAVPLPSLKTISVYDCPGLRKLPLN  266 (305)
Q Consensus       233 ~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  266 (305)
                      | .+++++.....+++|++|+++++ +++.++..
T Consensus       229 N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         229 N-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             S-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             c-cccccccccccccCCCEEECCCC-ccCccChh
Confidence            8 78888877778899999999886 67777543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=6.4e-17  Score=141.14  Aligned_cols=244  Identities=15%  Similarity=0.182  Sum_probs=161.4

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      .+|++|+++++ .++.+ +.+..+++|++|++++|+++.+| .++++++|++|++++|++..                ..
T Consensus        44 ~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~----------------i~  104 (384)
T d2omza2          44 DQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD----------------IT  104 (384)
T ss_dssp             TTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC----------------CG
T ss_pred             CCCCEEECCCC-CCCCc-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccc----------------cc
Confidence            57888999988 78777 45788899999999999888886 48889999999999987532                12


Q ss_pred             cccCccCccceeEEEeecCccccccccc----------------------------------------------------
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQS----------------------------------------------------  109 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~----------------------------------------------------  109 (305)
                      .+..+++|+.+++..+  ..........                                                    
T Consensus       105 ~l~~l~~L~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (384)
T d2omza2         105 PLANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI  182 (384)
T ss_dssp             GGTTCTTCCEEECCSS--CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc
Confidence            3556666666655431  1111000000                                                    


Q ss_pred             ---------CCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCc
Q 044279          110 ---------SPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMT  178 (305)
Q Consensus       110 ---------~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~  178 (305)
                               ......+++.+.++.+.++.+.  ..+++|+.|++++|.+++++.       ...+++|+.|++.+| .++
T Consensus       183 ~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n-~l~  254 (384)
T d2omza2         183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLANN-QIS  254 (384)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------GGGCTTCSEEECCSS-CCC
T ss_pred             cccccccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcch-------hhcccccchhccccC-ccC
Confidence                     0001124556666644455444  556788888888888776652       256889999999998 677


Q ss_pred             cCCcCCCCCCCCEEEEeccccccccccccCCC---------CCccccccccccCccceeeccCcccCceecCCCCCCCCC
Q 044279          179 DLKWIRCAPNLQFLYVSDCQVLSEIIGTYESP---------GTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSL  249 (305)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L  249 (305)
                      +++.+..+++|++|+++++.. ..+++.....         ........+..+++++.|+++++ .++.++. ...+++|
T Consensus       255 ~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L  331 (384)
T d2omza2         255 NLAPLSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKL  331 (384)
T ss_dssp             CCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTC
T ss_pred             CCCcccccccCCEeeccCccc-CCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCcc-cccCCCC
Confidence            777788899999999988653 3333211111         01111234677889999999998 7777654 5679999


Q ss_pred             ceEEeeCCCCCCCCCCCCccccCcCceEeCC
Q 044279          250 KTISVYDCPGLRKLPLNSGSAKNSLNAIRGS  280 (305)
Q Consensus       250 ~~L~l~~c~~l~~~~~~~~~~~~~~~~i~~~  280 (305)
                      ++|++++| .++.++ .+... ..+..++..
T Consensus       332 ~~L~L~~n-~l~~l~-~l~~l-~~L~~L~l~  359 (384)
T d2omza2         332 QRLFFANN-KVSDVS-SLANL-TNINWLSAG  359 (384)
T ss_dssp             CEEECCSS-CCCCCG-GGGGC-TTCCEEECC
T ss_pred             CEEECCCC-CCCCCh-hHcCC-CCCCEEECC
Confidence            99999988 677765 34444 344444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.3e-17  Score=135.58  Aligned_cols=201  Identities=18%  Similarity=0.243  Sum_probs=149.0

Q ss_pred             EeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCc
Q 044279            7 LDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESL   86 (305)
Q Consensus         7 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l   86 (305)
                      ++++.+ .+.++. .+..+.+|++|++.+|+++.++ ++.++++|++|++++|.+.               . ...+..+
T Consensus        24 ~~l~~~-~~~d~~-~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~---------------~-~~~l~~l   84 (227)
T d1h6ua2          24 IAAGKS-NVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT---------------D-LAPLKNL   84 (227)
T ss_dssp             HHTTCS-STTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------C-CGGGTTC
T ss_pred             HHhCCC-CcCCcC-CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceee---------------c-ccccccc
Confidence            455555 555443 3577888999999999998884 6899999999999998742               2 2347888


Q ss_pred             cCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCC
Q 044279           87 ENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFR  164 (305)
Q Consensus        87 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~  164 (305)
                      ++|+.+.+..  +....++.+....    +|+.+.++.+......  ...+.++.+.++.+.+.....       ...++
T Consensus        85 ~~l~~l~~~~--n~~~~i~~l~~l~----~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~  151 (227)
T d1h6ua2          85 TKITELELSG--NPLKNVSAIAGLQ----SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-------LAGLT  151 (227)
T ss_dssp             CSCCEEECCS--CCCSCCGGGTTCT----TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-------GGGCT
T ss_pred             cccccccccc--ccccccccccccc----cccccccccccccccchhccccchhhhhchhhhhchhhh-------hcccc
Confidence            8888888877  4444555444443    3888888844444333  567788889988877554432       25678


Q ss_pred             ccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCC
Q 044279          165 NLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAV  244 (305)
Q Consensus       165 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  244 (305)
                      +|++|++.+| .+++.+.+.++++|+.|++++|. ++.++             .+.++++|++|++++| .+++++. ..
T Consensus       152 ~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n~-l~~l~-------------~l~~l~~L~~L~Ls~N-~lt~i~~-l~  214 (227)
T d1h6ua2         152 NLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDIS-------------PLASLPNLIEVHLKNN-QISDVSP-LA  214 (227)
T ss_dssp             TCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCCEEECTTS-CCCBCGG-GT
T ss_pred             cccccccccc-ccccchhhcccccceecccCCCc-cCCCh-------------hhcCCCCCCEEECcCC-cCCCCcc-cc
Confidence            8999999998 77777778889999999999975 55543             3568899999999999 7888875 56


Q ss_pred             CCCCCceEEeeC
Q 044279          245 PLPSLKTISVYD  256 (305)
Q Consensus       245 ~~~~L~~L~l~~  256 (305)
                      .+++|+.|++++
T Consensus       215 ~l~~L~~L~lsn  226 (227)
T d1h6ua2         215 NTSNLFIVTLTN  226 (227)
T ss_dssp             TCTTCCEEEEEE
T ss_pred             cCCCCCEEEeeC
Confidence            899999999863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.3e-17  Score=134.63  Aligned_cols=193  Identities=18%  Similarity=0.128  Sum_probs=125.5

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      .+..++.+++ .++.+|+.+.  +++++|++++|++..+|.. +..+++|++|++++|.+.               . ++
T Consensus        11 ~~~~v~C~~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~---------------~-l~   71 (266)
T d1p9ag_          11 SHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---------------K-LQ   71 (266)
T ss_dssp             TCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---------------E-EE
T ss_pred             CCeEEEccCC-CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc---------------c-cc
Confidence            3455677777 7788886553  4788888988888877754 788888999999888742               1 22


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCccc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTY  161 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  161 (305)
                      .+..+++|+.|+++.  +.......   ..                    ..+++|+.|+++++.+..++....     .
T Consensus        72 ~~~~l~~L~~L~Ls~--N~l~~~~~---~~--------------------~~l~~L~~L~l~~~~~~~~~~~~~-----~  121 (266)
T d1p9ag_          72 VDGTLPVLGTLDLSH--NQLQSLPL---LG--------------------QTLPALTVLDVSFNRLTSLPLGAL-----R  121 (266)
T ss_dssp             CCSCCTTCCEEECCS--SCCSSCCC---CT--------------------TTCTTCCEEECCSSCCCCCCSSTT-----T
T ss_pred             ccccccccccccccc--cccccccc---cc--------------------ccccccccccccccccceeecccc-----c
Confidence            345677777777766  32221111   10                    345667777777666555554432     5


Q ss_pred             CCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCcee
Q 044279          162 CFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSI  239 (305)
Q Consensus       162 ~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  239 (305)
                      .+.+++.|++.+| .++.++  .+..+++|+.+++++|. +..+++           ..+..+++|++|+|+++ .++.+
T Consensus       122 ~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N-~L~~l  187 (266)
T d1p9ag_         122 GLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-----------GLLNGLENLDTLLLQEN-SLYTI  187 (266)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-----------TTTTTCTTCCEEECCSS-CCCCC
T ss_pred             ccccccccccccc-ccceeccccccccccchhccccccc-ccccCc-----------cccccccccceeecccC-CCccc
Confidence            5677777777777 555543  34456777777777754 333333           24566777777777777 57777


Q ss_pred             cCCCCCCCCCceEEeeCCC
Q 044279          240 CCRAVPLPSLKTISVYDCP  258 (305)
Q Consensus       240 ~~~~~~~~~L~~L~l~~c~  258 (305)
                      +.....+++|+.|+++++|
T Consensus       188 p~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCC
T ss_pred             ChhHCCCCCCCEEEecCCC
Confidence            7666677777777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.5e-17  Score=132.93  Aligned_cols=184  Identities=17%  Similarity=0.251  Sum_probs=117.6

Q ss_pred             CcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      .+|+.|++.+| .+++++ .+.++++|++|++++|++..++ .+..+++|+++.+++|.+                ....
T Consensus        41 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~----------------~~i~  101 (227)
T d1h6ua2          41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPL----------------KNVS  101 (227)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCC----------------SCCG
T ss_pred             CCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccc----------------cccc
Confidence            46777778777 677763 4777788888888777777664 367777788777777753                2234


Q ss_pred             cccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCc
Q 044279           82 GLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGR  159 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~  159 (305)
                      .+..+++|+.+.+..  ........+....    .++.+.++.+.+....  ..+++|+.|++++|.+++...       
T Consensus       102 ~l~~l~~L~~l~l~~--~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-------  168 (227)
T d1h6ua2         102 AIAGLQSIKTLDLTS--TQITDVTPLAGLS----NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-------  168 (227)
T ss_dssp             GGTTCTTCCEEECTT--SCCCCCGGGTTCT----TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------
T ss_pred             ccccccccccccccc--ccccccchhcccc----chhhhhchhhhhchhhhhccccccccccccccccccchh-------
Confidence            566677777777765  3333333332222    2666666633333322  566777777777776554432       


Q ss_pred             ccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279          160 TYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH  232 (305)
Q Consensus       160 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (305)
                      +..+++|++|++++| .+++++.+.++++|++|++++|+ ++++++             +.++++|+.|+|++
T Consensus       169 l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~i~~-------------l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP-------------LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG-------------GTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCCCcc-------------cccCCCCCEEEeeC
Confidence            146777888888777 67777667777778888887764 544443             45677777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.9e-17  Score=133.69  Aligned_cols=173  Identities=18%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++++|++++| .++.+|. .+.++++|++|++++|+++.+|. ++.+++|++|++++|++               ...+
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l---------------~~~~   93 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL---------------QSLP   93 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC---------------SSCC
T ss_pred             cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccc---------------cccc
Confidence            47999999999 8999875 58999999999999999998864 67899999999999984               4456


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRT  160 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  160 (305)
                      ..+..+++|+.|+++.  +....+..   ...                   ..+.+++.|++.+|.++.++....     
T Consensus        94 ~~~~~l~~L~~L~l~~--~~~~~~~~---~~~-------------------~~l~~l~~L~l~~n~l~~l~~~~~-----  144 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSF--NRLTSLPL---GAL-------------------RGLGELQELYLKGNELKTLPPGLL-----  144 (266)
T ss_dssp             CCTTTCTTCCEEECCS--SCCCCCCS---STT-------------------TTCTTCCEEECTTSCCCCCCTTTT-----
T ss_pred             cccccccccccccccc--cccceeec---ccc-------------------ccccccccccccccccceeccccc-----
Confidence            6788889999998877  32222111   000                   335566666666666665554442     


Q ss_pred             cCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcc
Q 044279          161 YCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLP  234 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  234 (305)
                      ..+++++.+++++| .++.++  .+..+++|++|++++|. ++.++.            .+..+++|+.|+|++++
T Consensus       145 ~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~------------~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         145 TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPK------------GFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCCCSEEECCSCC
T ss_pred             cccccchhcccccc-cccccCccccccccccceeecccCC-CcccCh------------hHCCCCCCCEEEecCCC
Confidence            45666777777766 555543  35566677777777654 445544            34456667777776653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=4.5e-17  Score=138.70  Aligned_cols=201  Identities=14%  Similarity=0.142  Sum_probs=129.3

Q ss_pred             cccccccccCCccc---cCCcccccccccceeeccc-cceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279           26 INLCHLNLSNTKIR---ELPAGIKYLKNLKILRLDV-FSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT  101 (305)
Q Consensus        26 ~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  101 (305)
                      .+++.|+++++.+.   .+|..++.+++|++|++++ |.+              ...+|..+.++++|+.|+++++....
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l--------------~g~iP~~i~~L~~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------------VGPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--------------ESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc--------------ccccccccccccccchhhhccccccc
Confidence            47899999998775   6899999999999999987 453              34678899999999999999943222


Q ss_pred             ccccccccCCCccccceEEEEEcCCC-cccc---ccCCCccEEEEeceecc-eecccccCCCcccCCCc-cceEeeeCCC
Q 044279          102 HAFCRFQSSPKLQSCVKRLTVASPWF-SSLD---FRMDHLETLEIVDCSLE-SINIYFGDQGRTYCFRN-LRHLSVKDCH  175 (305)
Q Consensus       102 ~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~---~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~-L~~L~L~~~~  175 (305)
                      .....+...    ..|+.++++.+.. ..++   ..++.|+.+++++|.++ .++..+      ..+.. ++.+++++| 
T Consensus       116 ~~~~~~~~~----~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~------~~l~~l~~~l~~~~n-  184 (313)
T d1ogqa_         116 AIPDFLSQI----KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------GSFSKLFTSMTISRN-  184 (313)
T ss_dssp             ECCGGGGGC----TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG------GCCCTTCCEEECCSS-
T ss_pred             cccccccch----hhhcccccccccccccCchhhccCcccceeecccccccccccccc------ccccccccccccccc-
Confidence            222223333    3388888884433 2333   77899999999999855 444433      23334 366666666 


Q ss_pred             CCccC-C------------------------cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeec
Q 044279          176 FMTDL-K------------------------WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDL  230 (305)
Q Consensus       176 ~l~~~-~------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  230 (305)
                      .++.. +                        .+..+++++.+++.++..... +            ..++.+++|+.|++
T Consensus       185 ~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~------------~~~~~~~~L~~L~L  251 (313)
T d1ogqa_         185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-L------------GKVGLSKNLNGLDL  251 (313)
T ss_dssp             EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-G------------GGCCCCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-c------------cccccccccccccC
Confidence            33321 1                        122344555555555432211 1            13556777788888


Q ss_pred             cCcccCc-eecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          231 QHLPSLT-SICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       231 ~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      ++| .++ .+|.....+++|++|+++++..-..+|.
T Consensus       252 s~N-~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         252 RNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccC-eecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            777 444 5666666777888888876632225664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-16  Score=132.99  Aligned_cols=213  Identities=18%  Similarity=0.198  Sum_probs=147.2

Q ss_pred             EEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeecccccccccccccc
Q 044279            6 VLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE   84 (305)
Q Consensus         6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~   84 (305)
                      .++.+++ .++.+|..+.  ..+++|++++|+++.+|.. +.++++|++|+++++.+.              ......+.
T Consensus        15 ~v~c~~~-~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~--------------~i~~~~~~   77 (284)
T d1ozna_          15 TTSCPQQ-GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------RIDAAAFT   77 (284)
T ss_dssp             EEECCSS-CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTT
T ss_pred             EEEcCCC-CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc--------------cccccccc
Confidence            3456666 6778886543  5678999999999888764 888999999999888753              22233445


Q ss_pred             CccCccceeEEEeecCcccc--cccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceecccccCCC
Q 044279           85 SLENIHDISITLCFVDTHAF--CRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        85 ~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      .+..++.+.+... .....+  ..+..+    .+|+.|+++.+.+..+.    ....+|+.+++++|.++.++...+   
T Consensus        78 ~~~~~~~l~~~~~-~~~~~l~~~~~~~l----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f---  149 (284)
T d1ozna_          78 GLALLEQLDLSDN-AQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---  149 (284)
T ss_dssp             TCTTCCEEECCSC-TTCCCCCTTTTTTC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---
T ss_pred             ccccccccccccc-cccccccchhhccc----ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh---
Confidence            5566665554331 111111  112222    34888888855554433    667889999999998888876553   


Q ss_pred             cccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                        ..+++|+.|++++| .++.++  .+..+++|+++++++|... .+.+           ..+..+++|++|+++++ .+
T Consensus       150 --~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~-~i~~-----------~~f~~l~~L~~L~l~~N-~i  213 (284)
T d1ozna_         150 --RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVA-HVHP-----------HAFRDLGRLMTLYLFAN-NL  213 (284)
T ss_dssp             --TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC-EECT-----------TTTTTCTTCCEEECCSS-CC
T ss_pred             --ccccchhhcccccC-cccccchhhhccccccchhhhhhcccc-ccCh-----------hHhhhhhhccccccccc-cc
Confidence              67788999999998 677654  5678899999999997654 3333           36778899999999998 56


Q ss_pred             ceecC-CCCCCCCCceEEeeCCCC
Q 044279          237 TSICC-RAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       237 ~~~~~-~~~~~~~L~~L~l~~c~~  259 (305)
                      ..++. ....+++|+.|++++++-
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccCEEEecCCCC
Confidence            55543 345789999999988653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=3.2e-16  Score=132.83  Aligned_cols=219  Identities=16%  Similarity=0.195  Sum_probs=151.9

Q ss_pred             CCcccEEeCCCCCCcccc-chhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccc
Q 044279            1 MHALAVLDLSYNFDLVEL-PEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +++|++|++++| .+..+ |..+.++++|++|++++|+++.+|..+  ...++.|.+..+.+..              ..
T Consensus        54 l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~--------------l~  116 (305)
T d1xkua_          54 LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITK--------------VR  116 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCB--------------BC
T ss_pred             cccccccccccc-cccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccccchhh--------------hh
Confidence            578999999999 77777 456999999999999999999998654  3688999998887432              11


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-ccCCCccEEEEeceecceecccccCCC
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-FRMDHLETLEIVDCSLESINIYFGDQG  158 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~  158 (305)
                      ...+.....+..+....  +................+|+.+.+..+.+..++ ..+++|+.|++++|.........    
T Consensus       117 ~~~~~~~~~~~~l~~~~--n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~----  190 (305)
T d1xkua_         117 KSVFNGLNQMIVVELGT--NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS----  190 (305)
T ss_dssp             HHHHTTCTTCCEEECCS--SCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG----
T ss_pred             hhhhhcccccccccccc--ccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhH----
Confidence            12233444455554443  211111111111111234777888766666666 55788999999988855555443    


Q ss_pred             cccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          159 RTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                       +..++.++.|++++| .++.++  ++.++++|++|++++|. +..++.            .+..+++|++|++++| .+
T Consensus       191 -~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~------------~l~~l~~L~~L~Ls~N-~i  254 (305)
T d1xkua_         191 -LKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPG------------GLADHKYIQVVYLHNN-NI  254 (305)
T ss_dssp             -GTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCT------------TTTTCSSCCEEECCSS-CC
T ss_pred             -hhccccccccccccc-cccccccccccccccceeeeccccc-cccccc------------ccccccCCCEEECCCC-cc
Confidence             267788999999988 666653  56678999999999975 555554            6778899999999998 67


Q ss_pred             ceecCCC-------CCCCCCceEEeeCCC
Q 044279          237 TSICCRA-------VPLPSLKTISVYDCP  258 (305)
Q Consensus       237 ~~~~~~~-------~~~~~L~~L~l~~c~  258 (305)
                      +.++...       ...++|+.|++++++
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCc
Confidence            7765432       246788999998876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=133.83  Aligned_cols=197  Identities=17%  Similarity=0.130  Sum_probs=150.7

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTV   79 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~   79 (305)
                      +.+++|++++| .++.+|. .+.++.+|++|+++++++..++.. +..+..++++....+...             ....
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~-------------~~l~   97 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL-------------RSVD   97 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-------------CCCC
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc-------------cccc
Confidence            36899999999 8999986 589999999999999999866555 667888888877544321             2333


Q ss_pred             cccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc----ccCCCccEEEEeceecceeccccc
Q 044279           80 LAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD----FRMDHLETLEIVDCSLESINIYFG  155 (305)
Q Consensus        80 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~  155 (305)
                      +..+..+++|+.|++..  +....+..  .......+|+.++++.+.++.++    ..+++|+.|++++|.++.++...+
T Consensus        98 ~~~~~~l~~L~~L~l~~--n~~~~~~~--~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDR--CGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             TTTTTTCTTCCEEECTT--SCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             chhhcccccCCEEecCC--cccccccc--cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            56788999999999987  33222211  12223345999999988787776    567899999999999988876653


Q ss_pred             CCCcccCCCccceEeeeCCCCCccC--CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCc
Q 044279          156 DQGRTYCFRNLRHLSVKDCHFMTDL--KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHL  233 (305)
Q Consensus       156 ~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  233 (305)
                           ..+++|+.+++.+| .++.+  ..+..+++|++|++++|.. ..+++           ..++.+++|++|+++++
T Consensus       174 -----~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i-~~~~~-----------~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         174 -----RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNL-SALPT-----------EALAPLRALQYLRLNDN  235 (284)
T ss_dssp             -----TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-SCCCH-----------HHHTTCTTCCEEECCSS
T ss_pred             -----ccccccchhhhhhc-cccccChhHhhhhhhccccccccccc-ccccc-----------cccccccccCEEEecCC
Confidence                 78899999999999 66655  3678899999999999774 44443           36778999999999997


Q ss_pred             c
Q 044279          234 P  234 (305)
Q Consensus       234 ~  234 (305)
                      +
T Consensus       236 ~  236 (284)
T d1ozna_         236 P  236 (284)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.6e-16  Score=127.37  Aligned_cols=165  Identities=22%  Similarity=0.303  Sum_probs=105.9

Q ss_pred             hcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcc
Q 044279           23 GKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTH  102 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  102 (305)
                      ..+..|++|++++|.+..++ ++..+++|++|++++|.+.               . ...+..+++|+.|++++  +...
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~---------------~-l~~~~~l~~L~~L~l~~--n~i~  103 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT---------------D-IKPLANLKNLGWLFLDE--NKVK  103 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------C-CGGGTTCTTCCEEECCS--SCCC
T ss_pred             HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcccc---------------C-ccccccCcccccccccc--cccc
Confidence            34566677777777666654 4666777777777776532               1 22355666777777666  3333


Q ss_pred             cccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccC
Q 044279          103 AFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       103 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      .++.+...    ++|+.|+++.+.+..++  ..++.++.++++.+.+++...       ...+++|+.+++++| .++++
T Consensus       104 ~l~~l~~l----~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~-------~~~l~~L~~l~l~~n-~l~~i  171 (210)
T d1h6ta2         104 DLSSLKDL----KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLEDN-QISDI  171 (210)
T ss_dssp             CGGGGTTC----TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-------GGGCTTCSEEECCSS-CCCCC
T ss_pred             cccccccc----cccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccc-ccccc
Confidence            33333322    23677776644444444  567778888888777655442       256788888888888 67777


Q ss_pred             CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccC
Q 044279          181 KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQH  232 (305)
Q Consensus       181 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  232 (305)
                      +.+.++++|++|++++|. +++++             .+.++++|++|+|++
T Consensus       172 ~~l~~l~~L~~L~Ls~N~-i~~l~-------------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 VPLAGLTKLQNLYLSKNH-ISDLR-------------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGTTCTTCCEEECCSSC-CCBCG-------------GGTTCTTCSEEEEEE
T ss_pred             ccccCCCCCCEEECCCCC-CCCCh-------------hhcCCCCCCEEEccC
Confidence            667788888888888864 44443             356788888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2e-16  Score=125.76  Aligned_cols=174  Identities=20%  Similarity=0.266  Sum_probs=118.5

Q ss_pred             eCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCcc
Q 044279            8 DLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLE   87 (305)
Q Consensus         8 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~   87 (305)
                      .++.+ .+++.+. ...+.++++|+++++++..++ ++..+++|++|++++|++.               . ...+..++
T Consensus        24 ~l~~~-~~~~~~~-~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~---------------~-~~~l~~l~   84 (199)
T d2omxa2          24 VLGKT-NVTDTVS-QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT---------------D-ITPLKNLT   84 (199)
T ss_dssp             HTTCS-STTSEEC-HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC---------------C-CGGGTTCT
T ss_pred             HhCCC-CCCCccC-HHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCcccccccc---------------C-cccccCCc
Confidence            34444 4443322 245677777888777777763 5777778888888777642               2 22367777


Q ss_pred             CccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCc
Q 044279           88 NIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRN  165 (305)
Q Consensus        88 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  165 (305)
                      +|+.|++..  +....++.+....    .|+.|+++++......  ..+++|+.+++++|.+..++. +      ..+++
T Consensus        85 ~L~~L~l~~--n~~~~~~~l~~l~----~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l------~~~~~  151 (199)
T d2omxa2          85 KLVDILMNN--NQIADITPLANLT----NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-L------SGLTS  151 (199)
T ss_dssp             TCCEEECCS--SCCCCCGGGTTCT----TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-G------TTCTT
T ss_pred             ccccccccc--ccccccccccccc----ccccccccccccccccccchhhhhHHhhhhhhhhccccc-c------ccccc
Confidence            777777776  4444444333332    3777777744444333  678899999999988766552 2      57899


Q ss_pred             cceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279          166 LRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI  228 (305)
Q Consensus       166 L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  228 (305)
                      |+.|++.+| .+++++.+.++++|++|++++|. +++++             .+.++++|+.|
T Consensus       152 L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N~-i~~i~-------------~l~~L~~L~~L  199 (199)
T d2omxa2         152 LQQLNFSSN-QVTDLKPLANLTTLERLDISSNK-VSDIS-------------VLAKLTNLESL  199 (199)
T ss_dssp             CSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEE
T ss_pred             ccccccccc-cccCCccccCCCCCCEEECCCCC-CCCCc-------------cccCCCCCCcC
Confidence            999999998 78888888899999999999975 55443             35678888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7e-18  Score=141.84  Aligned_cols=159  Identities=17%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE-cCCCcccc-----ccCCCccEEEEecee-cceeccc
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD-----FRMDHLETLEIVDCS-LESINIY  153 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~-----~~~~~L~~L~l~~~~-l~~~~~~  153 (305)
                      ..+..+++|+.|.+.++......+..+...    ++|++|+++ |..+++..     ..+++|++|++++|. +++....
T Consensus        65 ~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~----~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~  140 (284)
T d2astb2          65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKN----SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  140 (284)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTC----TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHHhCCCcccccccccCCCcHHHHHHhcC----CCCcCccccccccccccccchhhHHHHhccccccccccccccccch
Confidence            334555556655555532121222222221    235566665 44554322     445566666666554 3322211


Q ss_pred             ccCCCcccCCCccceEeeeCCC-CCccC--C-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceee
Q 044279          154 FGDQGRTYCFRNLRHLSVKDCH-FMTDL--K-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVID  229 (305)
Q Consensus       154 ~~~~~~~~~~~~L~~L~L~~~~-~l~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  229 (305)
                      ...   ...+++|++|++++|. .+++.  . .+.++|+|++|++++|..++....           ..+..+++|++|+
T Consensus       141 ~~~---~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~-----------~~l~~~~~L~~L~  206 (284)
T d2astb2         141 VAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFQLNYLQHLS  206 (284)
T ss_dssp             HHH---HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-----------GGGGGCTTCCEEE
T ss_pred             hhh---cccccccchhhhcccccccccccccccccccccccccccccccCCCchhh-----------hhhcccCcCCEEE
Confidence            100   1234556666665542 22221  1 123455666666666554432221           1344556666666


Q ss_pred             ccCcccCceec-CCCCCCCCCceEEeeCC
Q 044279          230 LQHLPSLTSIC-CRAVPLPSLKTISVYDC  257 (305)
Q Consensus       230 l~~~~~l~~~~-~~~~~~~~L~~L~l~~c  257 (305)
                      +++|..++.-. .....+|+|+.|++.+|
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66665554221 11234556666666555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.6e-15  Score=119.14  Aligned_cols=182  Identities=16%  Similarity=0.235  Sum_probs=133.0

Q ss_pred             cccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCccc
Q 044279           24 KLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHA  103 (305)
Q Consensus        24 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  103 (305)
                      ++.+.....++.+.+...+ ....+.++++|+++++.+.                ....++.+++|+.|++++  +....
T Consensus        16 ~l~~~i~~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~----------------~l~~l~~l~nL~~L~Ls~--N~l~~   76 (199)
T d2omxa2          16 ALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIK----------------SIDGVEYLNNLTQINFSN--NQLTD   76 (199)
T ss_dssp             HHHHHHHHHTTCSSTTSEE-CHHHHTTCCEEECTTSCCC----------------CCTTGGGCTTCCEEECCS--SCCCC
T ss_pred             HHHHHHHHHhCCCCCCCcc-CHHHhcCCCEEECCCCCCC----------------CccccccCCCcCcCcccc--ccccC
Confidence            4445556667666666543 3457889999999998742                235678899999999988  44444


Q ss_pred             ccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC
Q 044279          104 FCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK  181 (305)
Q Consensus       104 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~  181 (305)
                      +..+..+    ++|+.|+++.+.+..++  ..++.|+.++++++.....+.       ...+++|+.|++++| .+..++
T Consensus        77 ~~~l~~l----~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~  144 (199)
T d2omxa2          77 ITPLKNL----TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSN-TISDIS  144 (199)
T ss_dssp             CGGGTTC----TTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSS-CCCCCG
T ss_pred             cccccCC----cccccccccccccccccccccccccccccccccccccccc-------cchhhhhHHhhhhhh-hhcccc
Confidence            4444333    34999999966666665  778899999998887554432       256899999999998 677777


Q ss_pred             cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceE
Q 044279          182 WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTI  252 (305)
Q Consensus       182 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  252 (305)
                      .+..+++|++|++.+|. +..++             .++++++|++|++++| .+++++. ...+++|++|
T Consensus       145 ~l~~~~~L~~L~l~~n~-l~~l~-------------~l~~l~~L~~L~ls~N-~i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         145 ALSGLTSLQQLNFSSNQ-VTDLK-------------PLANLTTLERLDISSN-KVSDISV-LAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCSEEECCSSC-CCCCG-------------GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEE
T ss_pred             ccccccccccccccccc-ccCCc-------------cccCCCCCCEEECCCC-CCCCCcc-ccCCCCCCcC
Confidence            78889999999999975 44333             3568899999999998 6888764 5578888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.3e-16  Score=132.37  Aligned_cols=206  Identities=16%  Similarity=0.190  Sum_probs=143.7

Q ss_pred             hcccccccccccCCccc--cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecC
Q 044279           23 GKLINLCHLNLSNTKIR--ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVD  100 (305)
Q Consensus        23 ~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  100 (305)
                      ....+|++||+++|.+.  .++..+.++++|++|++++|.+              ....+..+..+++|+.|++++|  .
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l--------------~~~~~~~l~~~~~L~~L~Ls~c--~  106 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL--------------SDPIVNTLAKNSNLVRLNLSGC--S  106 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC--------------CHHHHHHHTTCTTCSEEECTTC--B
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC--------------CcHHHHHHhcCCCCcCcccccc--c
Confidence            45568999999998765  4555578899999999999975              3455667888999999999873  2


Q ss_pred             cccccccccCCCccccceEEEEE-cCCCcccc------ccCCCccEEEEecee--cceecccccCCCcccCCCccceEee
Q 044279          101 THAFCRFQSSPKLQSCVKRLTVA-SPWFSSLD------FRMDHLETLEIVDCS--LESINIYFGDQGRTYCFRNLRHLSV  171 (305)
Q Consensus       101 ~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~------~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~~~~~L~~L~L  171 (305)
                      ......+......+++|++|+++ |..+++..      ..++.|+.|++++|.  +++......    ...+++|++|++
T Consensus       107 ~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l----~~~~~~L~~L~L  182 (284)
T d2astb2         107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----VRRCPNLVHLDL  182 (284)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH----HHHCTTCSEEEC
T ss_pred             cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc----cccccccccccc
Confidence            22222222222334569999999 77765432      456899999999874  444333221    256899999999


Q ss_pred             eCCCCCcc--CCcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCC
Q 044279          172 KDCHFMTD--LKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSL  249 (305)
Q Consensus       172 ~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L  249 (305)
                      ++|..+++  +..+.++++|++|++++|..+.....           ..++.+|+|+.|++++|..-..+......+|+|
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l-----------~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL  251 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH-----------HHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc
Confidence            99977775  35677899999999999987754332           256789999999999983333333222346665


Q ss_pred             ceEEeeCCCCCCCC
Q 044279          250 KTISVYDCPGLRKL  263 (305)
Q Consensus       250 ~~L~l~~c~~l~~~  263 (305)
                      +   + .|..+..+
T Consensus       252 ~---i-~~~~ls~~  261 (284)
T d2astb2         252 Q---I-NCSHFTTI  261 (284)
T ss_dssp             E---E-SCCCSCCT
T ss_pred             c---c-cCccCCCC
Confidence            4   4 46555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-14  Score=117.21  Aligned_cols=222  Identities=17%  Similarity=0.147  Sum_probs=139.6

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      +.++.++. .++.+|..+.  .++++|++++|++..+|.. +.++++|++|++++|.+.             .......+
T Consensus        11 ~~i~c~~~-~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~-------------~~i~~~~f   74 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-------------EVIEADVF   74 (242)
T ss_dssp             SEEEEESC-SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTC-------------CEECSSSE
T ss_pred             CEEEEeCC-CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccc-------------ceeecccc
Confidence            56677776 7788887553  5789999999999988875 788999999999998742             11223456


Q ss_pred             cCccCccceeEEEeecCcccc-cccccCCCccccceEEEEEcCCCcccc--ccC---CCccEEEEeceecceecccccCC
Q 044279           84 ESLENIHDISITLCFVDTHAF-CRFQSSPKLQSCVKRLTVASPWFSSLD--FRM---DHLETLEIVDCSLESINIYFGDQ  157 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~---~~L~~L~l~~~~l~~~~~~~~~~  157 (305)
                      ..+++++.+.+..+..-.... ..+...    ++|+.+++..+.+...+  ..+   +.+..+...++.+..++....  
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l----~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~--  148 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNL----PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--  148 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECC----TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS--
T ss_pred             cccccccccccccccccccccccccccc----ccccccccchhhhccccccccccccccccccccccccccccccccc--
Confidence            778888887765521111111 112222    34888888855555544  233   334444444444666654432  


Q ss_pred             CcccCCCccceEeeeCCCCCccCC-cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccC
Q 044279          158 GRTYCFRNLRHLSVKDCHFMTDLK-WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSL  236 (305)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  236 (305)
                        ......++.|++.++ .++.++ .....++++.+....++.+++++.           ..+.++++|++|+|+++ .+
T Consensus       149 --~~~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~-----------~~f~~l~~L~~L~Ls~N-~l  213 (242)
T d1xwdc1         149 --VGLSFESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPN-----------DVFHGASGPVILDISRT-RI  213 (242)
T ss_dssp             --TTSBSSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCT-----------TTTTTSCCCSEEECTTS-CC
T ss_pred             --ccccccceeeecccc-cccccccccccchhhhccccccccccccccH-----------HHhcCCCCCCEEECCCC-cC
Confidence              122347888888887 666654 233456677776666666776665           24667899999999888 67


Q ss_pred             ceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          237 TSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      +.++.  ..+.+|..|..-++..++.+|.
T Consensus       214 ~~l~~--~~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         214 HSLPS--YGLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             CCCCS--SSCTTCCEEESSSEESSSCSCC
T ss_pred             CccCH--HHHcCCcccccCcCCCCCcCCC
Confidence            77764  3456666666555556666653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1e-14  Score=116.70  Aligned_cols=183  Identities=15%  Similarity=0.178  Sum_probs=130.6

Q ss_pred             ccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCcccccc
Q 044279           27 NLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCR  106 (305)
Q Consensus        27 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  106 (305)
                      +.....+..+.+.... ....+.+|++|++++|.+.                ....+..+++|+.|++++  +....++.
T Consensus        25 ~~i~~~l~~~~~~~~~-~~~~L~~L~~L~l~~~~i~----------------~l~~l~~l~~L~~L~L~~--n~i~~l~~   85 (210)
T d1h6ta2          25 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIK----------------SVQGIQYLPNVTKLFLNG--NKLTDIKP   85 (210)
T ss_dssp             HHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCC----------------CCTTGGGCTTCCEEECCS--SCCCCCGG
T ss_pred             HHHHHHhCcCccCCcc-CHHHhcCccEEECcCCCCC----------------CchhHhhCCCCCEEeCCC--ccccCccc
Confidence            3444455554444321 2345788999999988742                234578889999999988  44444444


Q ss_pred             cccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCC
Q 044279          107 FQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIR  184 (305)
Q Consensus       107 l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~  184 (305)
                      +..+    ++|+.|+++.+.++.++  ..+++|+.|++.+|.+..++.       ...+++++.+++++| .+++.+.+.
T Consensus        86 ~~~l----~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~-------l~~l~~l~~l~~~~n-~l~~~~~~~  153 (210)
T d1h6ta2          86 LANL----KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-------LVHLPQLESLYLGNN-KITDITVLS  153 (210)
T ss_dssp             GTTC----TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCSS-CCCCCGGGG
T ss_pred             cccC----cccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccc-ccccccccc
Confidence            3332    34999999877777776  778899999998887655442       256788999999888 677777777


Q ss_pred             CCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeC
Q 044279          185 CAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYD  256 (305)
Q Consensus       185 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  256 (305)
                      .+++|+.+++++|. +..++             .+.++++|+.|++++| .+++++. ...+++|+.|++++
T Consensus       154 ~l~~L~~l~l~~n~-l~~i~-------------~l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQ-ISDIV-------------PLAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCSEEECCSSC-CCCCG-------------GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEE
T ss_pred             cccccccccccccc-ccccc-------------cccCCCCCCEEECCCC-CCCCChh-hcCCCCCCEEEccC
Confidence            88999999999875 43333             2567899999999998 7888764 56789999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=112.95  Aligned_cols=194  Identities=12%  Similarity=0.122  Sum_probs=134.0

Q ss_pred             CcccEEeCCCCCCccccch-hhhcccccccccccCCccc-cCCc-ccccccccceeeccccceeeceEEEeecccccccc
Q 044279            2 HALAVLDLSYNFDLVELPE-AIGKLINLCHLNLSNTKIR-ELPA-GIKYLKNLKILRLDVFSWFSTELVALHHNFCCATT   78 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~-~lp~-~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~   78 (305)
                      +++++|++++| .++.+|. .+.++++|++|++++|.+. .++. .+.++++++++.+..+...             ...
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l-------------~~~   94 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-------------LYI   94 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC-------------CEE
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc-------------ccc
Confidence            47999999999 8999986 4899999999999999775 4444 4788999999988654311             334


Q ss_pred             ccccccCccCccceeEEEeecCcccccccccCCCccccceEEEEE---cCCCcccc----c-cCCCccEEEEeceeccee
Q 044279           79 VLAGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVA---SPWFSSLD----F-RMDHLETLEIVDCSLESI  150 (305)
Q Consensus        79 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~---~~~~~~~~----~-~~~~L~~L~l~~~~l~~~  150 (305)
                      .+..+..+++|+.+.+..  +............    .++.+...   .+.+..++    . ....++.++++++.++.+
T Consensus        95 ~~~~~~~l~~L~~l~l~~--~~l~~~~~~~~~~----~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISN--TGIKHLPDVHKIH----SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             CTTSEECCTTCCEEEEES--CCCCSCCCCTTTC----BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccch--hhhcccccccccc----cccccccccccccccccccccccccccccceeeeccccccccc
Confidence            456688999999999988  4433333322222    24444333   44555554    2 234788899988888888


Q ss_pred             cccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCcccee
Q 044279          151 NIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVI  228 (305)
Q Consensus       151 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  228 (305)
                      +...      ....+++.+....+..++.++  .+.++++|++|++++|. ++.++.           ..+.++++|+.+
T Consensus       169 ~~~~------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-----------~~~~~l~~L~~l  230 (242)
T d1xwdc1         169 HNCA------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-----------YGLENLKKLRAR  230 (242)
T ss_dssp             CTTT------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS-----------SSCTTCCEEESS
T ss_pred             cccc------ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH-----------HHHcCCcccccC
Confidence            7654      234566666544444888876  37789999999999976 556654           245667777777


Q ss_pred             eccCc
Q 044279          229 DLQHL  233 (305)
Q Consensus       229 ~l~~~  233 (305)
                      ++..+
T Consensus       231 ~~~~l  235 (242)
T d1xwdc1         231 STYNL  235 (242)
T ss_dssp             SEESS
T ss_pred             cCCCC
Confidence            66544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.49  E-value=7.4e-13  Score=113.31  Aligned_cols=52  Identities=31%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             cccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccce
Q 044279            3 ALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~   61 (305)
                      ++++||++++ .++.+|+.   .++|++|++++|+++.+|..+   .+|++|++.+|.+
T Consensus        39 ~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l   90 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNL   90 (353)
T ss_dssp             TCSEEECTTS-CCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred             CCCEEEeCCC-CCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhccc
Confidence            5789999999 88888864   467899999999998888654   4677888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.48  E-value=9.1e-13  Score=112.74  Aligned_cols=60  Identities=27%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             CCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCCCCCCCC
Q 044279          186 APNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPGLRKLPL  265 (305)
Q Consensus       186 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  265 (305)
                      +++|++|++++|. +..++.               .+++|+.|++++| .+++++.   .+++|++|++++|+ ++.+|.
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~---------------~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPA---------------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCC
T ss_pred             CCCCCEEECCCCc-cCcccc---------------ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCc
Confidence            5778888888865 433332               3678888888887 6777664   35678888888775 777765


Q ss_pred             C
Q 044279          266 N  266 (305)
Q Consensus       266 ~  266 (305)
                      .
T Consensus       342 ~  342 (353)
T d1jl5a_         342 I  342 (353)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=2.1e-12  Score=93.90  Aligned_cols=122  Identities=20%  Similarity=0.259  Sum_probs=90.0

Q ss_pred             cEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccccccc
Q 044279            5 AVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLE   84 (305)
Q Consensus         5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~   84 (305)
                      |+|++++| .++.++. ++++.+|++|++++|+++.+|..++.+++|++|++++|.+.               . .+.+.
T Consensus         1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~---------------~-l~~~~   62 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE---------------N-VDGVA   62 (124)
T ss_dssp             SEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC---------------C-CGGGT
T ss_pred             CEEEcCCC-CCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc---------------c-cCccc
Confidence            68999999 8898875 89999999999999999999988999999999999999853               2 24588


Q ss_pred             CccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCCcccCCC
Q 044279           85 SLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQGRTYCFR  164 (305)
Q Consensus        85 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~  164 (305)
                      .+++|+.+++++  +....++.+...                     ..+++|+.+++++|+++..+....  .....+|
T Consensus        63 ~l~~L~~L~l~~--N~i~~~~~~~~l---------------------~~~~~L~~L~l~~N~i~~~~~~~~--~l~~~lp  117 (124)
T d1dcea3          63 NLPRLQELLLCN--NRLQQSAAIQPL---------------------VSCPRLVLLNLQGNSLCQEEGIQE--RLAEMLP  117 (124)
T ss_dssp             TCSSCCEEECCS--SCCCSSSTTGGG---------------------GGCTTCCEEECTTSGGGGSSSCTT--HHHHHCT
T ss_pred             cccccCeEECCC--CccCCCCCchhh---------------------cCCCCCCEEECCCCcCCcCccHHH--HHHHHCc
Confidence            899999999888  433333322111                     447788888888887654432110  0024567


Q ss_pred             ccceE
Q 044279          165 NLRHL  169 (305)
Q Consensus       165 ~L~~L  169 (305)
                      +|+.|
T Consensus       118 ~L~~L  122 (124)
T d1dcea3         118 SVSSI  122 (124)
T ss_dssp             TCSEE
T ss_pred             CcceE
Confidence            77665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=99.45  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             hhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEEeecCc
Q 044279           22 IGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITLCFVDT  101 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  101 (305)
                      +.+..++++|++++|++..+|..+..+++|++|++++|.+.               . .+.+..+++|+.|++++  +..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~---------------~-l~~~~~l~~L~~L~ls~--N~i   75 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---------------K-LDGFPLLRRLKTLLVNN--NRI   75 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC---------------E-ECCCCCCSSCCEEECCS--SCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC---------------c-cCCcccCcchhhhhccc--ccc
Confidence            34556677777777777777655566777777777777642               1 23466677777777766  222


Q ss_pred             ccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecc-cccCCCcccCCCccceEeeeCCCCCccC
Q 044279          102 HAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINI-YFGDQGRTYCFRNLRHLSVKDCHFMTDL  180 (305)
Q Consensus       102 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~  180 (305)
                      ..+..   .                   +...+++|+.|++++|.+++++. ..     ...+++|++|++++| .++..
T Consensus        76 ~~l~~---~-------------------~~~~l~~L~~L~L~~N~i~~~~~l~~-----l~~l~~L~~L~l~~N-~i~~~  127 (162)
T d1a9na_          76 CRIGE---G-------------------LDQALPDLTELILTNNSLVELGDLDP-----LASLKSLTYLCILRN-PVTNK  127 (162)
T ss_dssp             CEECS---C-------------------HHHHCTTCCEEECCSCCCCCGGGGGG-----GGGCTTCCEEECCSS-GGGGS
T ss_pred             cCCCc---c-------------------ccccccccccceeccccccccccccc-----cccccccchhhcCCC-ccccc
Confidence            22111   0                   00346777888888777666543 22     256788888888888 45554


Q ss_pred             C-----cCCCCCCCCEEEEec
Q 044279          181 K-----WIRCAPNLQFLYVSD  196 (305)
Q Consensus       181 ~-----~~~~~~~L~~L~l~~  196 (305)
                      +     .+..+|+|+.|+-..
T Consensus       128 ~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_         128 KHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             TTHHHHHHHHCTTCSEETTEE
T ss_pred             cchHHHHHHHCCCcCeeCCCC
Confidence            4     245678888886443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=9.7e-12  Score=90.29  Aligned_cols=115  Identities=20%  Similarity=0.191  Sum_probs=75.7

Q ss_pred             EEEEEcCCCcccc--ccCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEec
Q 044279          119 RLTVASPWFSSLD--FRMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSD  196 (305)
Q Consensus       119 ~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~  196 (305)
                      .|+++.+.++.++  ..+.+|++|++++|.++++|..+      ..+++|+.|++++| .++.++.+..+++|++|++++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~------~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL------AALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG------GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhh------hhhhcccccccccc-cccccCccccccccCeEECCC
Confidence            3455555555555  66778888888888877776544      56788888888887 777777777888888888888


Q ss_pred             cccccccccccCCCCCccccccccccCccceeeccCcccCceecCCC----CCCCCCceE
Q 044279          197 CQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA----VPLPSLKTI  252 (305)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L  252 (305)
                      |. +..++.          ...+..+++|++|+++++ .++..+...    ..+|+|+.|
T Consensus        75 N~-i~~~~~----------~~~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NR-LQQSAA----------IQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SC-CCSSST----------TGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             Cc-cCCCCC----------chhhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            65 333322          124567788888888887 344333221    135666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=9e-12  Score=97.71  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             cCCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEecccc
Q 044279          133 RMDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       133 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~  199 (305)
                      .+++|+.|++++|.++.++...+     .++++|++|+|++| .++.++  .+..+++|++|++++|..
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F-----~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMF-----LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSS-----TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccceeeeccccccccCHHHH-----hCCCcccccccCCc-cccccCHHHhcCCccccccccccccc
Confidence            35566666776666666665542     56677777777777 555553  355667777777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5e-11  Score=90.66  Aligned_cols=104  Identities=15%  Similarity=0.121  Sum_probs=57.7

Q ss_pred             CCCccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCCcCCCCCCCCEEEEeccccccccccccCCCCCc
Q 044279          134 MDHLETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLKWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTS  213 (305)
Q Consensus       134 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  213 (305)
                      +..+++|++++|.++.++...      ..+++|+.|++++| .++.++.+..+++|++|++++|. +..+++        
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~------~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~--------   80 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLG------ATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGE--------   80 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGG------GGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECS--------
T ss_pred             cCcCcEEECCCCCCCccCccc------cccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCc--------
Confidence            445666666666655554211      34566666666666 55555555566666666666654 333332        


Q ss_pred             cccccccccCccceeeccCcccCceecC--CCCCCCCCceEEeeCC
Q 044279          214 EIEESHHFLSNLMVIDLQHLPSLTSICC--RAVPLPSLKTISVYDC  257 (305)
Q Consensus       214 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c  257 (305)
                         ..+..+++|+.|++++| .+++++.  ....+++|++|++++|
T Consensus        81 ---~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          81 ---GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             ---CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ---cccccccccccceeccc-cccccccccccccccccchhhcCCC
Confidence               12345666666666666 4444432  1235666666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=4.4e-10  Score=87.79  Aligned_cols=117  Identities=17%  Similarity=0.118  Sum_probs=78.0

Q ss_pred             cCCCcccc-ccCCCccEEEEeceecce-ecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEecccc
Q 044279          124 SPWFSSLD-FRMDHLETLEIVDCSLES-INIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQV  199 (305)
Q Consensus       124 ~~~~~~~~-~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~  199 (305)
                      .++++.+| .-.++++.|++++|.++. ++...     +..+++|+.|++++| .+..++  .+..+++|++|++++|. 
T Consensus        17 ~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~-----f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N~-   89 (192)
T d1w8aa_          17 GRGLKEIPRDIPLHTTELLLNDNELGRISSDGL-----FGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-   89 (192)
T ss_dssp             TSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCS-----GGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-
T ss_pred             CCCcCccCCCCCCCCCEEEeCCCCCcccccccc-----cCCCceEeeeecccc-ccccccccccccccccceeeecccc-
Confidence            34555665 223578888888887654 33333     256788888888877 444432  45567788888888854 


Q ss_pred             ccccccccCCCCCccccccccccCccceeeccCcccCceecCCC-CCCCCCceEEeeCCCC
Q 044279          200 LSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPSLTSICCRA-VPLPSLKTISVYDCPG  259 (305)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~  259 (305)
                      +..+++           ..+.++++|++|+|+++ .++.++... ..+++|++|++++++.
T Consensus        90 l~~l~~-----------~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          90 IKEISN-----------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEECS-----------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccCH-----------HHHhCCCcccccccCCc-cccccCHHHhcCCccccccccccccc
Confidence            555554           35667888888888887 777776543 4678888888877653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=3.4e-12  Score=100.67  Aligned_cols=140  Identities=18%  Similarity=0.205  Sum_probs=82.1

Q ss_pred             cEEeCCCCC-CccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeeccccccccccccc
Q 044279            5 AVLDLSYNF-DLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGL   83 (305)
Q Consensus         5 ~~L~l~~~~-~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l   83 (305)
                      +.+++++.. .+..++..+..+.+|++|++++|+++.++ .++.+++|++|++++|.+.               .++...
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~---------------~i~~~~   89 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK---------------KIENLD   89 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEEC---------------SCSSHH
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccc---------------cccccc
Confidence            344444431 23455556666777777777766666664 4666677777777666532               222222


Q ss_pred             cCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc--ccCCCccEEEEeceecceecc-cccCCCcc
Q 044279           84 ESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD--FRMDHLETLEIVDCSLESINI-YFGDQGRT  160 (305)
Q Consensus        84 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~  160 (305)
                      ..+++|+.|++.+                            |.++.++  ..+++|+.|++++|.+++++. ..     +
T Consensus        90 ~~~~~L~~L~l~~----------------------------N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~-----l  136 (198)
T d1m9la_          90 AVADTLEELWISY----------------------------NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK-----L  136 (198)
T ss_dssp             HHHHHCCEEECSE----------------------------EECCCHHHHHHHHHSSEEEESEEECCCHHHHHH-----H
T ss_pred             ccccccccccccc----------------------------ccccccccccccccccccccccchhcccccccc-----c
Confidence            2334455555555                            2333332  457788888888888776653 22     2


Q ss_pred             cCCCccceEeeeCCCCCccCC-----------cCCCCCCCCEEE
Q 044279          161 YCFRNLRHLSVKDCHFMTDLK-----------WIRCAPNLQFLY  193 (305)
Q Consensus       161 ~~~~~L~~L~L~~~~~l~~~~-----------~~~~~~~L~~L~  193 (305)
                      ..+++|+.|++++|+.....+           .+..+|+|+.||
T Consensus       137 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            678889999998883222111           134678899886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=2.4e-11  Score=104.00  Aligned_cols=234  Identities=16%  Similarity=0.140  Sum_probs=137.4

Q ss_pred             CcccEEeCCCCCCccc-----cchhhhcccccccccccCCcccc-----------CCcccccccccceeeccccceeece
Q 044279            2 HALAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKIRE-----------LPAGIKYLKNLKILRLDVFSWFSTE   65 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~~-----------lp~~~~~l~~L~~L~l~~~~~~~~~   65 (305)
                      ..|+.|++++| .++.     +...+...++|+.++++.+....           +...+..+++|++|++++|.+..  
T Consensus        31 ~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--  107 (344)
T d2ca6a1          31 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP--  107 (344)
T ss_dssp             SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT--
T ss_pred             CCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc--
Confidence            56888999988 6642     33446677888899888764321           22234557789999999887531  


Q ss_pred             EEEeeccccccccccccccCccCccceeEEEeecCccccccc----cc-----CCCccccceEEEEEcCCCcccc-----
Q 044279           66 LVALHHNFCCATTVLAGLESLENIHDISITLCFVDTHAFCRF----QS-----SPKLQSCVKRLTVASPWFSSLD-----  131 (305)
Q Consensus        66 ~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~-----~~~~~~~L~~L~l~~~~~~~~~-----  131 (305)
                              .....+...+...++|+.|+++++.........+    ..     .....+.|+.+.++.+.+++..     
T Consensus       108 --------~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         108 --------TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             --------TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             --------ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence                    0112234455677889999887732111100001    00     0011224777887755554322     


Q ss_pred             ---ccCCCccEEEEeceecceeccc-ccCCCcccCCCccceEeeeCCCCCccC------CcCCCCCCCCEEEEecccccc
Q 044279          132 ---FRMDHLETLEIVDCSLESINIY-FGDQGRTYCFRNLRHLSVKDCHFMTDL------KWIRCAPNLQFLYVSDCQVLS  201 (305)
Q Consensus       132 ---~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~l~~~~~~~  201 (305)
                         ...+.|+.|+++.|.+.+.+.. +...+ ...+++|+.|++++| .+++.      ..+..+++|++|++++|..-.
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~-l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             chhhhhhhhcccccccccccccccccchhhh-hcchhhhcccccccc-cccccccccccccccccccchhhhhhcCccCc
Confidence               5677899999988876543211 10000 256788999999988 44432      245678899999999976422


Q ss_pred             ccccccCCCCCcccccccc--ccCccceeeccCcccCce-----ecCCC-CCCCCCceEEeeCC
Q 044279          202 EIIGTYESPGTSEIEESHH--FLSNLMVIDLQHLPSLTS-----ICCRA-VPLPSLKTISVYDC  257 (305)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c  257 (305)
                      .-..        .+...+.  ..+.|++|+|++| .++.     +.... ...++|+.|+++++
T Consensus       258 ~g~~--------~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         258 RGAA--------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHH--------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhhH--------HHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            1111        0001222  3467999999998 4542     22111 14678999999775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.82  E-value=5.9e-11  Score=93.37  Aligned_cols=129  Identities=19%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             CCcccEEeCCCCCCccccchhhhcccccccccccCCccccCCcccccccccceeeccccceeeceEEEeecccccccccc
Q 044279            1 MHALAVLDLSYNFDLVELPEAIGKLINLCHLNLSNTKIRELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVL   80 (305)
Q Consensus         1 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~   80 (305)
                      +++|++|++++| .++.++ .+..+++|++|++++|.+..+|.....+++|++|++++|.+.               . +
T Consensus        47 L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~---------------~-l  108 (198)
T d1m9la_          47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA---------------S-L  108 (198)
T ss_dssp             TTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC---------------C-H
T ss_pred             ccccceeECccc-CCCCcc-cccCCccccChhhccccccccccccccccccccccccccccc---------------c-c
Confidence            578999999999 888886 589999999999999999999866677789999999999752               2 3


Q ss_pred             ccccCccCccceeEEEeecCcccccccccCCCccccceEEEEEcCCCccccccCCCccEEEEeceecceecccccCCC--
Q 044279           81 AGLESLENIHDISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLDFRMDHLETLEIVDCSLESINIYFGDQG--  158 (305)
Q Consensus        81 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--  158 (305)
                      ..+..+++|+.|+++.|  ....+..+...                     ..+++|+.|++++|++...........  
T Consensus       109 ~~~~~l~~L~~L~L~~N--~i~~~~~~~~l---------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  165 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNN--KITNWGEIDKL---------------------AALDKLEDLLLAGNPLYNDYKENNATSEY  165 (198)
T ss_dssp             HHHHHHHHSSEEEESEE--ECCCHHHHHHH---------------------TTTTTCSEEEECSSHHHHHHCTTTTHHHH
T ss_pred             ccccccccccccccccc--hhccccccccc---------------------cCCCccceeecCCCccccCcccccchhhH
Confidence            45778888999998883  32222221111                     347788888888887544432211000  


Q ss_pred             ---cccCCCccceEe
Q 044279          159 ---RTYCFRNLRHLS  170 (305)
Q Consensus       159 ---~~~~~~~L~~L~  170 (305)
                         ....+|+|+.||
T Consensus       166 r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         166 RIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHCSSCCEES
T ss_pred             HHHHHHHCCCcCEeC
Confidence               024578888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.8e-08  Score=75.68  Aligned_cols=104  Identities=18%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             ccEEEEeceecceecccccCCCcccCCCccceEeeeCCCCCccCC--cCCCCCCCCEEEEeccccccccccccCCCCCcc
Q 044279          137 LETLEIVDCSLESINIYFGDQGRTYCFRNLRHLSVKDCHFMTDLK--WIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSE  214 (305)
Q Consensus       137 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  214 (305)
                      .+.++.+++.+.+.+..+      ..+++|++|++.++..++.++  .|..+++|+.|++++|. +..+++         
T Consensus        10 ~~~l~c~~~~~~~~p~~l------~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~---------   73 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHL------PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAP---------   73 (156)
T ss_dssp             SSCEECCSSCCCTTTTTS------CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECT---------
T ss_pred             CCeEEecCCCCccCcccc------cCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCccc---------
Confidence            345555555555555433      456778888887765676664  46778888888888854 555554         


Q ss_pred             ccccccccCccceeeccCcccCceecCCCCCCCCCceEEeeCCCC
Q 044279          215 IEESHHFLSNLMVIDLQHLPSLTSICCRAVPLPSLKTISVYDCPG  259 (305)
Q Consensus       215 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  259 (305)
                        ..+..+++|++|+|+++ .++.++.......+|+.|++++++.
T Consensus        74 --~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          74 --DAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             --TGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             --ccccccccccceeccCC-CCcccChhhhccccccccccCCCcc
Confidence              35667888888888887 7777777666666788888877753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.1e-10  Score=99.94  Aligned_cols=36  Identities=17%  Similarity=0.140  Sum_probs=22.2

Q ss_pred             ccCccceeeccCcccCce-----ecCCCCCCCCCceEEeeCC
Q 044279          221 FLSNLMVIDLQHLPSLTS-----ICCRAVPLPSLKTISVYDC  257 (305)
Q Consensus       221 ~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c  257 (305)
                      ..+.|++|++++| .++.     +......+++|++|+++++
T Consensus       367 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         367 PGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             ccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence            3456778888877 5543     2222234577888888766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.60  E-value=2.6e-09  Score=91.01  Aligned_cols=227  Identities=12%  Similarity=0.007  Sum_probs=139.3

Q ss_pred             ccchhhhcccccccccccCCccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccc
Q 044279           17 ELPEAIGKLINLCHLNLSNTKIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHD   91 (305)
Q Consensus        17 ~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~   91 (305)
                      .+...+.....|+.|++++|.+.     .+-..+...++|+.++++++......    .........+...+..+++|+.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK----DEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG----GGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccc----cccchHHHHHHHHHhhCCCccc
Confidence            44556778899999999999764     34345677889999999876421000    0000001123445667889999


Q ss_pred             eeEEEeecCcccccccccCCCccccceEEEEEcCCCcccc-----------------ccCCCccEEEEeceecceecccc
Q 044279           92 ISITLCFVDTHAFCRFQSSPKLQSCVKRLTVASPWFSSLD-----------------FRMDHLETLEIVDCSLESINIYF  154 (305)
Q Consensus        92 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~L~~L~l~~~~l~~~~~~~  154 (305)
                      |+++.+.........+.....-.++|++|+++.+.+....                 ...+.|+.+.++.+.+++.....
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            9998843222223333322222345999999855443211                 45678999999888755433221


Q ss_pred             cCCCcccCCCccceEeeeCCCCCccC-------CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccce
Q 044279          155 GDQGRTYCFRNLRHLSVKDCHFMTDL-------KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMV  227 (305)
Q Consensus       155 ~~~~~~~~~~~L~~L~L~~~~~l~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  227 (305)
                      .... ...++.|+.|++++| .+++.       ..+..+++|+.|++++|..-.....        .+...+..+++|++
T Consensus       178 l~~~-l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~--------~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         178 WAKT-FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS--------ALAIALKSWPNLRE  247 (344)
T ss_dssp             HHHH-HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH--------HHHHHGGGCTTCCE
T ss_pred             ccch-hhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccc--------cccccccccccchh
Confidence            1000 245788999999998 55441       2355789999999999763221110        01124567899999


Q ss_pred             eeccCcccCce-----ecCC--CCCCCCCceEEeeCCC
Q 044279          228 IDLQHLPSLTS-----ICCR--AVPLPSLKTISVYDCP  258 (305)
Q Consensus       228 L~l~~~~~l~~-----~~~~--~~~~~~L~~L~l~~c~  258 (305)
                      |+|++| .++.     +...  ....+.|++|++++|.
T Consensus       248 L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         248 LGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             EECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            999999 4543     2111  1245789999998874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.2e-07  Score=71.02  Aligned_cols=102  Identities=10%  Similarity=0.092  Sum_probs=71.0

Q ss_pred             ccEEeCCCCCCccccchhhhcccccccccccCC-ccccCCcc-cccccccceeeccccceeeceEEEeeccccccccccc
Q 044279            4 LAVLDLSYNFDLVELPEAIGKLINLCHLNLSNT-KIRELPAG-IKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLA   81 (305)
Q Consensus         4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~   81 (305)
                      ...++.+++ ...+.|..+..+++|++|++.++ .++.++.. |.++++|++|++++|.+.              ...+.
T Consensus        10 ~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~--------------~i~~~   74 (156)
T d2ifga3          10 SSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------------FVAPD   74 (156)
T ss_dssp             SSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--------------EECTT
T ss_pred             CCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC--------------Ccccc
Confidence            455777777 66777777888888888888766 57777654 788888999999888752              22345


Q ss_pred             cccCccCccceeEEEeecCcccccc-cccCCCccccceEEEEEcCC
Q 044279           82 GLESLENIHDISITLCFVDTHAFCR-FQSSPKLQSCVKRLTVASPW  126 (305)
Q Consensus        82 ~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~  126 (305)
                      .+..+++|+.|++++  +....++. +....    .|++|+++.|.
T Consensus        75 ~f~~l~~L~~L~Ls~--N~l~~l~~~~~~~~----~l~~L~L~~Np  114 (156)
T d2ifga3          75 AFHFTPRLSRLNLSF--NALESLSWKTVQGL----SLQELVLSGNP  114 (156)
T ss_dssp             GGGSCSCCCEEECCS--SCCSCCCSTTTCSC----CCCEEECCSSC
T ss_pred             cccccccccceeccC--CCCcccChhhhccc----cccccccCCCc
Confidence            678888888888888  55444332 22222    27888887554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=8.4e-09  Score=90.47  Aligned_cols=86  Identities=19%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             CCccceEeeeCCCCCccC-------CcCCCCCCCCEEEEeccccccccccccCCCCCccccccccccCccceeeccCccc
Q 044279          163 FRNLRHLSVKDCHFMTDL-------KWIRCAPNLQFLYVSDCQVLSEIIGTYESPGTSEIEESHHFLSNLMVIDLQHLPS  235 (305)
Q Consensus       163 ~~~L~~L~L~~~~~l~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  235 (305)
                      .+.++.+++.++ .+.+.       ........++.+++++|........        .....+...+.++.++++++ .
T Consensus       225 ~~~~~~l~~~~n-~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~--------~~~~~l~~~~~l~~l~l~~n-~  294 (460)
T d1z7xw1         225 KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------DLCRVLRAKESLKELSLAGN-E  294 (460)
T ss_dssp             CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------HHHHHHHHCTTCCEEECTTC-C
T ss_pred             cccccccchhhc-cccccccchhhcccccccccccccccccccccccccc--------cccccccccccccccccccc-c
Confidence            455666666665 22110       1123345677777777654322111        00113445677788888776 3


Q ss_pred             Cce-----ecCC-CCCCCCCceEEeeCCC
Q 044279          236 LTS-----ICCR-AVPLPSLKTISVYDCP  258 (305)
Q Consensus       236 l~~-----~~~~-~~~~~~L~~L~l~~c~  258 (305)
                      ++.     +... ....+.|+.+.+++|.
T Consensus       295 i~~~~~~~l~~~l~~~~~~L~~l~l~~~~  323 (460)
T d1z7xw1         295 LGDEGARLLCETLLEPGCQLESLWVKSCS  323 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             ccccccchhhccccccccccccccccccc
Confidence            321     1110 1234678888888774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.4e-06  Score=62.04  Aligned_cols=59  Identities=32%  Similarity=0.205  Sum_probs=29.0

Q ss_pred             CcccEEeCCCCCCccccc---hhhhcccccccccccCCccccCCcc-cccccccceeeccccce
Q 044279            2 HALAVLDLSYNFDLVELP---EAIGKLINLCHLNLSNTKIRELPAG-IKYLKNLKILRLDVFSW   61 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~   61 (305)
                      ++|++|++++| .++.++   ..+..+++|+.|++++|.++.++.. .....+|++|++.+|++
T Consensus        65 ~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          65 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             TTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             CCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            45555555555 444332   2344555555555555555554431 12223455555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=1e-05  Score=60.46  Aligned_cols=10  Identities=30%  Similarity=0.298  Sum_probs=6.8

Q ss_pred             cCCCccceEe
Q 044279          161 YCFRNLRHLS  170 (305)
Q Consensus       161 ~~~~~L~~L~  170 (305)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4567777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.90  E-value=8.4e-05  Score=55.55  Aligned_cols=85  Identities=16%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             CcccEEeCCCCCCccc-----cchhhhcccccccccccCCccc-----cCCcccccccccceeeccccceeeceEEEeec
Q 044279            2 HALAVLDLSYNFDLVE-----LPEAIGKLINLCHLNLSNTKIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHH   71 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~   71 (305)
                      +.|+.|+++++..++.     +-..+...++|++|++++|.+.     .+...+...+.|++|++++|.+.+        
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~--------   86 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP--------   86 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH--------
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch--------
Confidence            5678888877534441     2334566677888888887664     222335566778888888876532        


Q ss_pred             cccccccccccccCccCccceeEEE
Q 044279           72 NFCCATTVLAGLESLENIHDISITL   96 (305)
Q Consensus        72 ~~~~~~~~~~~l~~l~~L~~L~l~~   96 (305)
                        .....+...+...+.|+.|++.+
T Consensus        87 --~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          87 --ELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             --HHHHHHHHHTTTTCCCSEEECCC
T ss_pred             --HHHHHHHHHHHhCCcCCEEECCC
Confidence              11222344566666777777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.33  E-value=0.00025  Score=52.85  Aligned_cols=65  Identities=12%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             hcccccccccccCC-ccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEEE
Q 044279           23 GKLINLCHLNLSNT-KIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISITL   96 (305)
Q Consensus        23 ~~l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   96 (305)
                      .+.++|+.|+++++ .+.     .+-..+...++|++|++++|.+.+          .....+...+...+.|+.|++++
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~----------~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----------SEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----------HHHTTHHHHHHHCSSCCEEECCS
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch----------hHHHHHhhhhhhcccccceeeeh
Confidence            45578999999875 453     233346667789999999887532          01122334455567778877777


Q ss_pred             e
Q 044279           97 C   97 (305)
Q Consensus        97 ~   97 (305)
                      |
T Consensus        82 n   82 (167)
T d1pgva_          82 N   82 (167)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.23  E-value=0.00021  Score=53.16  Aligned_cols=60  Identities=17%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             CcccEEeCCCCCCcc-----ccchhhhcccccccccccCCccc-----cCCcccccccccceeeccccce
Q 044279            2 HALAVLDLSYNFDLV-----ELPEAIGKLINLCHLNLSNTKIR-----ELPAGIKYLKNLKILRLDVFSW   61 (305)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~   61 (305)
                      +.|++|+++++..++     .+-..+...++|++|++++|.+.     .+-..+...+.++.+++.+|.+
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            556666666643343     12233455566666666666553     2222344556666666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.82  E-value=0.00034  Score=51.97  Aligned_cols=66  Identities=14%  Similarity=0.053  Sum_probs=42.1

Q ss_pred             hhcccccccccccCC-ccc-----cCCcccccccccceeeccccceeeceEEEeeccccccccccccccCccCccceeEE
Q 044279           22 IGKLINLCHLNLSNT-KIR-----ELPAGIKYLKNLKILRLDVFSWFSTELVALHHNFCCATTVLAGLESLENIHDISIT   95 (305)
Q Consensus        22 ~~~l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~   95 (305)
                      ..+.++|++|+++++ .+.     .+-..+...++|++|++++|.+..          .....+...+...+.++.+++.
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~----------~~~~~L~~~l~~~~~l~~l~l~   82 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND----------PVAFALAEMLKVNNTLKSLNVE   82 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH----------HHHHHHHHHHHHCSSCCEEECC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH----------HHHHHHHHHHhhcccchhhhhc
Confidence            456688999999874 454     233345677889999999987532          0122233445556677777776


Q ss_pred             Ee
Q 044279           96 LC   97 (305)
Q Consensus        96 ~~   97 (305)
                      .+
T Consensus        83 ~~   84 (166)
T d1io0a_          83 SN   84 (166)
T ss_dssp             SS
T ss_pred             cc
Confidence            63