Citrus Sinensis ID: 044308

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----

MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNPQHQSPANISADSESALESIASLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVAATLVVQTAAEQDKEQEKSEESPTEKDPFAASEAINKEPELVGGFKKNKDSSNDLTVALAGIEVTTLPPAEATQSTHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGGGLDASEFVGPKKIAKKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNLVKRTEMKGPEMYIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSSLGDGMFHVRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN

ccEEEEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccEEEEEEcEEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHccHHHHHHHHcccccccccccccHHHHHHHcccccccccccHHHHHcccHHHHHccccccccccccccccccccccccccHHHHcccccHHHccccccccccccccHHHcccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccEEEEEEEEEEEEEccEEEEEEEEEEEEEEEcccccccccccccEEEEEcccHHHHHHHHHcccccccccccEEEEcccccccccEEEEEEcccccccccEEEEEEEEcccEEEEEEEEEEccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccEEEEEEEcccccccccccccEEEEEEEEEcccccEEcEEEEEcccccccEEEcccccccEEEEcc

ccEEEEEEcccccccEEEEcHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEEccEEEEEEEEcEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHcHHHHHHHHcccccHHHHHHcHHHHHHHHHHHcccEEcccHHHHHcccHHHHHcccccccccccccccccccccccccccHHHHcccHHHHHcccccccccccHHHHHHcccccccccccHcccccEEEEEccccccccEEEccccccHHHHHcccccccccccccccccccccccccccccHHHHHcccccccHHHHHccccccHHHHcccccccccEEEEEEEEcHHHHHHHHHHEccEEEEEEEcccccccccccccEEEEEEcccHHHHHHHHHccEEEccccccEEEEccccccccEEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEccccccccccEEEEEEccccccccEcccccEEcccccEEEEEEccccccccccEEEEEEEccccccccccccccEEEEEEEcccccEEccEEEEEcccccccEEEEccEEcccEEEcc

msclalslqpvngsdillqtrewfppTRALAALSAFRQTREVFAAtkrlnpnpqhqspanisadSESALESIAslgddplaassgqlivGVESRYRVVYRLVNSIYVLGItnadhdnsinvFECINIVNQAVSVIVTacrgvdvtpekLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKirgadqwnsleiHSIEhqaavdsfshatfevpaetlaaGDEVAATLVVQTAAEqdkeqekseesptekdpfaaseainkepelvggfkknkdssnDLTVALAGievttlppaeatqsthinvegfegeyggiefsndqatMEETFEgfsdawgggldasefvgpkkiakkeglsglellqtgpdapapsskdgagtpldnlvkrtemkgpemyIVEQVNAEFRESLLARVGLMGAVYLrtmpkktsgddkdtefsfrvegTSAVKRFAVQSskvsslgdgmfhvrtapsdepipilrysllprltplplRVRLIKRHSGTLLSVMVQYvsnpdlpmplndvtfslklpvdptllkvspkavlnrsdrelkwivpeipvkgapgklrvrmpvdsseedggeeiDVVCHVKFASQGmlslsgvclrpategktdfyevghkyesgvyicn

msclalslqpvngSDILLQTREWFPPTRALAALSAFRQTREVFAATKrlnpnpqhqspanISADSESALESIASLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTacrgvdvtpeklnRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVAATLVVQTAAeqdkeqekseesptekdpfaaseainkepelvggfkknkdsSNDLTVALAGIEVTtlppaeatqstHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGGGLDASEFVGPKKIAKKEGLSGLELLQTGPdapapsskdgagtpldNLVKRTEMKGPEMYIVEQVNAEFRESLLARVGLMGAVYLRtmpkktsgddkdtefSFRVegtsavkrfavqsskvsslgdgmfhvrtapsdepipiLRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLpvdptllkvspkavlnrsdrelkwivpeipvkgapgklrvrmpVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLRPATEgktdfyevghkyesgvyicn

MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNPQHQSPANISADSESALESIASLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVAATLVVQTaaeqdkeqekseesPTEKDPFAASEAINKEPELVGGFKKNKDSSNDLTVALAGIEVTTLPPAEATQSTHINVegfegeyggiefSNDQATMEETFEGFSDAWGGGLDASEFVGPKKIAKKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNLVKRTEMKGPEMYIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSSLGDGMFHVRTAPSDEPIPIlrysllprltplplrvrlIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVdsseedggeeIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN

*****LSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFA****************************************GQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVAATLVV************************************************LTVALAGIEVTTLPP*****STHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGGGLDASEFV************************************************EMYIVEQVNAEFRESLLARVGLMGAVYLRT***************************************GMFHVRTA**DEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKG********************EIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYIC*

*SCLA*SLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVF******************************SLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVH****************************VDSFSHATFEVPAETLAAGDEV******************************************************LTVALAGIEVTTLPPAEATQSTHINVEGFEGEYGGIEFSNDQAT**********AWGG***************************************************EMKGPEMYIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAV****************TAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPT**KVSP**VLNRSDRELKWIV******************************VVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYIC*

MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNPQHQSPANISADSESALESIASLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVAATLVVQT*********************AASEAINKEPELVGGFKKNKDSSNDLTVALAGIEVTTLPPAEATQSTHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGGGLDASEFVGPKKIAKKEGLSGLELLQTGP*********GAGTPLDNLVKRTEMKGPEMYIVEQVNAEFRESLLARVGLMGAVYLRTMPK*********EFSFRVEGTSAVKRFAVQSSKVSSLGDGMFHVRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRM*********GEEIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN

*SCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAAT***************************SLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVAATLVVQ**********************AAS***NKEPELVGGFKKNKDSSNDLTVALAGIEVTTLPPAEATQSTHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGGGLDASEFVGPKKIAKKEGLSGLELLQTGPDAPA*******GTPLDNLVKRTEMKGPEMYIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSSLGDGMFHVRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		645
224126059		643	predicted protein [Populus trichocarpa]	0.981	0.984	0.754	0.0
356562393		630	PREDICTED: uncharacterized protein LOC10	0.972	0.995	0.726	0.0
297793267		642	hypothetical protein ARALYDRAFT_495846 [	0.987	0.992	0.72	0.0
255549091		640	conserved hypothetical protein [Ricinus	0.984	0.992	0.746	0.0
449457159		645	PREDICTED: uncharacterized protein LOC10	0.990	0.990	0.748	0.0
356575221		630	PREDICTED: uncharacterized protein LOC10	0.972	0.995	0.728	0.0
15242141		646	uncharacterized protein [Arabidopsis tha	0.986	0.984	0.712	0.0
357479679		635	hypothetical protein MTR_4g128210 [Medic	0.978	0.993	0.724	0.0
449510646		645	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.990	0.990	0.749	0.0
225446050		635	PREDICTED: uncharacterized protein LOC10	0.970	0.985	0.740	0.0

>gi\|224126059\|ref\|XP_002329651.1\| predicted protein [Populus trichocarpa] gi\|222870532\|gb\|EEF07663.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/655 (75%), Positives = 566/655 (86%), Gaps = 22/655 (3%)

Query: 1   MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNPQHQ---- 56
           MSCLALSLQP NGSDILLQTREWFPP RAL A SAFRQTR  F+ATK       HQ    
Sbjct: 1   MSCLALSLQPSNGSDILLQTREWFPPARALIATSAFRQTRLAFSATK-------HQPTAT 53

Query: 57  -SPANISAD----SESALESIASLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGIT 111
            +P+N+S+D    S ++++SIASLGDDPLAASSGQLIVGVESRYRVVYRLVN IY+LG+T
Sbjct: 54  TNPSNLSSDDYSLSAASVDSIASLGDDPLAASSGQLIVGVESRYRVVYRLVNGIYILGVT 113

Query: 112 NADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIR 171
            AD DNS+NVFECINIVNQAVSVIVTACRGVDVTPEKL+RKYAEIYMALDIVLRGVS+IR
Sbjct: 114 IADGDNSVNVFECINIVNQAVSVIVTACRGVDVTPEKLSRKYAEIYMALDIVLRGVSNIR 173

Query: 172 LAAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAE 231
           LAAML SMHGDGIAKMVHSALDTE KIRGAD W++LE+ + E QA++++FS+A+FE+P E
Sbjct: 174 LAAMLTSMHGDGIAKMVHSALDTENKIRGADSWSNLEVQASEQQASIEAFSNASFELPPE 233

Query: 232 TLAAGDEVAATLVVQTAAEQDKEQEKSEESPTEKDPFAASEAINKEPELVGGFKKNKDSS 291
           T+AAGDEVAA+L     +EQD++ EK EE    KDPFAASEA+NK  EL G FKK+K  S
Sbjct: 234 TIAAGDEVAASLA-PVVSEQDQKLEKLEEPEGPKDPFAASEAVNKPEELAGEFKKDKTQS 292

Query: 292 NDLTVALAGIEVTTLPPAEATQSTHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGG 351
            DLT+ALAG+EVTTLPPAEATQ+THI+VEGFEG+YGGIEFSN+QA++ ETFEGF DAWGG
Sbjct: 293 KDLTLALAGLEVTTLPPAEATQATHISVEGFEGDYGGIEFSNEQASLGETFEGFGDAWGG 352

Query: 352 GLDASEFVGPKKIAKKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNL-VKRTEMKGPEMY 410
           GLDASEFVGPKKI K++GL GLELLQTG D  A S     GTPL+NL V++TEMKGPEMY
Sbjct: 353 GLDASEFVGPKKIPKQQGLGGLELLQTG-DTKAASG--ATGTPLENLLVQKTEMKGPEMY 409

Query: 411 IVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSK 470
           IVE+++AEFRESLLARVGLMG VYLRT+P KT+ D K+TEFSFRV+ TSAVKRF +Q SK
Sbjct: 410 IVEEISAEFRESLLARVGLMGLVYLRTLPPKTAAD-KETEFSFRVDNTSAVKRFVMQGSK 468

Query: 471 VSSLGDGMFHVRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPD 530
           VSSLG+GMFHVRTAPSDEPIPIL+YSLLPRLTPLPLRVRL +RHSGTLLS+M+QYVSNPD
Sbjct: 469 VSSLGNGMFHVRTAPSDEPIPILKYSLLPRLTPLPLRVRLTQRHSGTLLSLMIQYVSNPD 528

Query: 531 LPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDS 590
           LP PL DVTF LKLPVDPTLLKVSPKAVLNR +RELKW VPEIP+KG+PG+L+ RMPVDS
Sbjct: 529 LPAPLTDVTFILKLPVDPTLLKVSPKAVLNRPERELKWHVPEIPLKGSPGRLKARMPVDS 588

Query: 591 SEEDGGEEIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN 645
           +E +  EEI+V  + KF+ QG  SLSG+CLRPA+EGKTDFYEV H+YESGVY+CN
Sbjct: 589 NEGEVDEEIEVFGYAKFSMQGKTSLSGICLRPASEGKTDFYEVSHRYESGVYMCN 643

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356562393\|ref\|XP_003549456.1\| PREDICTED: uncharacterized protein LOC100781636 isoform 1 [Glycine max] gi\|356562395\|ref\|XP_003549457.1\| PREDICTED: uncharacterized protein LOC100781636 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|297793267\|ref\|XP_002864518.1\| hypothetical protein ARALYDRAFT_495846 [Arabidopsis lyrata subsp. lyrata] gi\|297310353\|gb\|EFH40777.1\| hypothetical protein ARALYDRAFT_495846 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|255549091\|ref\|XP_002515601.1\| conserved hypothetical protein [Ricinus communis] gi\|223545276\|gb\|EEF46782.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449457159\|ref\|XP_004146316.1\| PREDICTED: uncharacterized protein LOC101219260 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356575221\|ref\|XP_003555740.1\| PREDICTED: uncharacterized protein LOC100777258 [Glycine max]	Back alignment and taxonomy information

>gi|15242141|ref|NP_200555.1| uncharacterized protein [Arabidopsis thaliana] gi|9758308|dbj|BAB08782.1| unnamed protein product [Arabidopsis thaliana] gi|44917457|gb|AAS49053.1| At5g57460 [Arabidopsis thaliana] gi|56381939|gb|AAV85688.1| At5g57460 [Arabidopsis thaliana] gi|110737819|dbj|BAF00848.1| hypothetical protein [Arabidopsis thaliana] gi|332009522|gb|AED96905.1| uncharacterized protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357479679\|ref\|XP_003610125.1\| hypothetical protein MTR_4g128210 [Medicago truncatula] gi\|355511180\|gb\|AES92322.1\| hypothetical protein MTR_4g128210 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449510646\|ref\|XP_004163721.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224406 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225446050\|ref\|XP_002271128.1\| PREDICTED: uncharacterized protein LOC100258100 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		645
TAIR\|locus:2174592		646	AT5G57460 "AT5G57460" [Arabido	0.987	0.986	0.666	3.6e-224

TAIR\|locus:2174592 AT5G57460 "AT5G57460" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2164 (766.8 bits), Expect = 3.6e-224, P = 3.6e-224
 Identities = 436/654 (66%), Positives = 513/654 (78%)

Query:     1 MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNP--QHQSP 58
             MSCLAL+LQP NGSDILLQTREWFPP RAL ALS FRQ R+  A++K+ +     Q Q+ 
Sbjct:     1 MSCLALALQPANGSDILLQTREWFPPARALIALSYFRQMRQALASSKQQHQQQSNQKQNQ 60

Query:    59 ANISADSESAL----ESIAS--LGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITN 112
             A+ S+ S S++    ++ A+  +GDDPLAAS+GQ+IVGVES+YRVVYRLVNSIY+LG+T 
Sbjct:    61 ASSSSSSSSSVADPDDATAAEFVGDDPLAASNGQVIVGVESKYRVVYRLVNSIYILGVTV 120

Query:   113 ADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRL 172
             ADHDNSINVFECI+IVNQAVSVIVTACRGV+VTPEKL RKYAE+YMALDIVLRGVS+IRL
Sbjct:   121 ADHDNSINVFECIHIVNQAVSVIVTACRGVEVTPEKLGRKYAEVYMALDIVLRGVSNIRL 180

Query:   173 AAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAET 232
             AAMLG+MHGDGIAKMVHSALDTE KIRGAD W ++E H+ EHQA+V++FS+A FE+P ET
Sbjct:   181 AAMLGAMHGDGIAKMVHSALDTENKIRGADSWMAVESHAAEHQASVNAFSNARFELPPET 240

Query:   233 LAAGDEVAATLVVQTXXXXXXXXXXXXXXPTEKDPFAASEAINKEPELVGGFKKNKD-SS 291
             +AAGDE AA+L                  P  KDPFAASE INKE ELVGGFKK KD SS
Sbjct:   241 VAAGDEFAASLAPVVPESEQLKEEPE---PENKDPFAASETINKEKELVGGFKKTKDPSS 297

Query:   292 NDLTVALAGIEVTTLPPAEATQSTHINVXXXXXXXXXXXXSNDQATMEETFEGFSDAWGG 351
              DLT+ALAG+EVTTLPPAEATQSTHINV            SN+QAT+ ETFE FSDAWGG
Sbjct:   298 TDLTLALAGLEVTTLPPAEATQSTHINVEGFEGQYGGIEFSNEQATIGETFESFSDAWGG 357

Query:   352 GLDASEFVGPKKIAKKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNLVKRTEMKGPEMYI 411
             GLD SEF+GPKKI KKEGL GLELL T  D  A   KDG    +DNLVK+ EMKGPEMYI
Sbjct:   358 GLDPSEFMGPKKIQKKEGLGGLELLHTS-DPKAVEGKDGVN--IDNLVKKPEMKGPEMYI 414

Query:   412 VEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKV 471
              E++  EFRESLLARVG+MG +YL+TMP K SG++K+TEFSFRVEGT+AVKRFA+QSS++
Sbjct:   415 SEEIRTEFRESLLARVGVMGVIYLKTMPPKGSGEEKETEFSFRVEGTTAVKRFAMQSSRI 474

Query:   472 SSLGDGMFHVRTAPSDEPIPIXXXXXXXXXXXXXXXXXXIKRHSGTLLSVMVQYVSNPDL 531
             SSLG+G+FHVRTAPS+EPIPI                  +KR SGTLLS+M+QYVSNPDL
Sbjct:   475 SSLGNGLFHVRTAPSEEPIPILKYSLQPKLTPLPLRVRMVKRISGTLLSLMIQYVSNPDL 534

Query:   532 PMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVXXX 591
             P PL +V F LKLPVDPTLLKVSPKA+LNR+DRELKW +PEIP+ G+PG+LR RMP+   
Sbjct:   535 PQPLKNVDFILKLPVDPTLLKVSPKAILNRTDRELKWQIPEIPLNGSPGRLRARMPIDSD 594

Query:   592 XXXXXXXIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN 645
                     D++C+VKF+ QG  SLSG+ LR A EG TDF+EV H+YE+GVY+CN
Sbjct:   595 NSEEEP--DIICYVKFSVQGNTSLSGISLRAAAEGNTDFFEVDHRYETGVYMCN 646


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      645       591   0.00084  120 3  11 23  0.43    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  292 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.70u 0.14s 47.84t   Elapsed:  00:00:02
  Total cpu time:  47.70u 0.14s 47.84t   Elapsed:  00:00:02
  Start:  Tue May 21 03:43:37 2013   End:  Tue May 21 03:43:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		645
cd09257		246	cd09257, AP_muniscins_like_MHD, Mu-homology domain	1e-57
cd07954		239	cd07954, AP_MHD_Cterm, C-terminal domain of adapto	5e-10
cd09264		253	cd09264, AP_Syp1_MHD, mu-homology domain (MHD) of	4e-07
pfam10291		251	pfam10291, muHD, Muniscin C-terminal mu homology d	3e-06
cd09265		258	cd09265, AP_Syp1_like_MHD, Mu-homology domain (MHD	0.004

>gnl\|CDD\|211368 cd09257, AP_muniscins_like_MHD, Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins	Back alignment and domain information

 Score =  194 bits (494), Expect = 1e-57
 Identities = 87/248 (35%), Positives = 123/248 (49%), Gaps = 18/248 (7%)

Query: 406 GPEMYIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSA-VKRF 464
              + + E++NAEF+ S L  VG+ G+V ++          K   F+ R+   SA V+  
Sbjct: 1   TVSLALTEELNAEFKGSSLCSVGVEGSVQVKVPSSG--VKPKPAPFNLRLNDASASVENA 58

Query: 465 AVQSSKVSSL------GDGMFHVRTAP----SDEPIPILRYSLLPRLTPLPLRVRLIKRH 514
            +  + + S+        G F V T      S+   PIL+YS   +L P+PLRV+   R 
Sbjct: 59  ILNVAFIESVESPGISSTGEFLVNTTAVRVASEVGSPILKYSCSSKLRPVPLRVQTRVRT 118

Query: 515 SGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPV-DPTLLKVSPKAVLNRSDRELKWIVPEI 573
           SG   SVMVQYVSNP LP PL++VT  + +P    T LK SP A+ +R  REL W +PEI
Sbjct: 119 SGNQCSVMVQYVSNPSLPGPLSNVTVIVNVPGGAGTSLKSSPSAIWDREKRELTWKLPEI 178

Query: 574 PVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLRPA---TEGKTDF 630
            V G  G LR R   D+      E++     V+  S G  +LSG+ L  A    E  T  
Sbjct: 179 GVNGEKGSLRARFEADAGPSLAAEKLQFPVLVRCLSSGS-TLSGIELEVAALDEENATAG 237

Query: 631 YEVGHKYE 638
             V  ++ 
Sbjct: 238 VLVKRRFR 245

This family corresponds to the MHD found in muniscins, a novel family of endocytic adaptor proteins. The term, muniscins, has been assigned to name the MHD of proteins with both EFC/F-BAR domain and MHD. These two domains are responsible for the membrane-tubulation activity associated with transmembrane cargo proteins. Members in this family include an endocytic adaptor Syp1, the mammalian FCH domain only proteins (FCHo1/2), SH3-containing GRB2-like protein 3-interacting protein 1 (SGIP1), and related uncharacterized proteins. Syp1 is a poorly characterized yeast protein with multiple biological functions. Syp1 contains an N-terminal EFC/F-BAR domain that induces membrane tabulation, a proline-rich domain (PRD) in the middle region, and a C-terminal MHD that can directly binds to the endocytic adaptor/scaffold protein Ede1 or a transmembrane stress sensor cargo protein Mid2. Thus, Syp1 represents a novel type of endocytic adaptor protein that participates in endocytosis, promotes vesicle tabulation, and contributes to cell polarity and stress response. Syp1 shares the same domain architecture with its two ubiquitously expressed mammalian counterparts, the membrane-sculpting F-BAR domain-containing Fer/Cip4 homology domain-only proteins 1 and 2 (FCHo1/2). FCHo1/2 represent key initial proteins ultimately controlling cellular nutrient uptake, receptor regulation, and synaptic vesicle retrieval. They are required for plasma membrane clathrin-coated vesicle (CCV) budding and marked sites of CCV formation. They bind specifically to the plasma membrane and recruit the scaffold proteins eps15 and intersectin, which subsequently engage the adaptor complex AP2 and clathrin, leading to coated vesicle formation. Another mammalian neuronal-specific protein, neuronal-specific transcript Scr homology 3 (SH3)-domain growth factor receptor-bound 2 (GRB2)-like (endophilin) interacting protein 1 [SGIP1] does not contain EFC/F-BAR domain, but does have a PRD and a C-terminal MHD and has been classified into this family as well. SGIP1 is an endophilin-interacting protein that plays an obligatory role in the regulation of energy homeostasis. It is also involved in clathrin-mediated endocytosis by interacting with phospholipids and eps15. Length = 246

>gnl\|CDD\|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)	Back alignment and domain information

>gnl\|CDD\|211375 cd09264, AP_Syp1_MHD, mu-homology domain (MHD) of adaptor protein (AP), Syp1, and related proteins	Back alignment and domain information

>gnl\|CDD\|220677 pfam10291, muHD, Muniscin C-terminal mu homology domain	Back alignment and domain information

>gnl\|CDD\|211376 cd09265, AP_Syp1_like_MHD, Mu-homology domain (MHD) of endocytic adaptor protein (AP), Syp1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		645
PF10291		257	muHD: Muniscin C-terminal mu homology domain; Inte	100.0
KOG2398		611	consensus Predicted proline-serine-threonine phosp	99.97
PF00928		262	Adap_comp_sub: Adaptor complexes medium subunit fa	99.49
KOG2635		512	consensus Medium subunit of clathrin adaptor compl	98.88
KOG0937		424	consensus Adaptor complexes medium subunit family	98.46
PF01217		141	Clat_adaptor_s: Clathrin adaptor complex small cha	97.1
KOG0938		446	consensus Adaptor complexes medium subunit family	96.07
KOG2398		611	consensus Predicted proline-serine-threonine phosp	93.05
KOG2740		418	consensus Clathrin-associated protein medium chain	92.07

>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans	Back alignment and domain information

Probab=100.00  E-value=3e-46  Score=371.10  Aligned_cols=231  Identities=28%  Similarity=0.420  Sum_probs=168.6

Q ss_pred             ceEEEEEEEEEEecceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhhcccccccc--cCCCcceEEecCC
Q 044308          408 EMYIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVS--SLGDGMFHVRTAP  485 (645)
Q Consensus       408 ~~afTE~inA~FkGs~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F~pns~l~~--S~~tgdF~vr~~a  485 (645)
                      .++|+|+|||+|||+++.|+.+.|.|.+--.++......+...++|||+|++++|+|+||..+++  +...++|++....
T Consensus         4 ~asi~E~VnA~Fk~g~~~~v~v~GEv~ls~~~~~~~~~~~~~~l~~rl~n~~~le~i~pN~~~v~~~~~~~~~f~~n~~~   83 (257)
T PF10291_consen    4 NASITETVNAYFKGGQLSKVKVTGEVALSYPAGISSSLTSPPPLSFRLNNFSRLEKIAPNPQFVSSSSQSDGEFWLNMSA   83 (257)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGEEEEEE-TTTE--EEEETTEEEE-TTT
T ss_pred             eEEEEEEEEEEEECCcEEEEEEEEEEEEecCCChhhcccCCCcEEEEEcCcchhceeecCHhHeecCCCCCCcEEEehHH
Confidence            57999999999999999999999999988555443321224589999999999999999999994  4577889997654


Q ss_pred             --CCCCcceEEeeeCCCC---CCCCcEEEEEEeecCceEEEEEEEEeCC-CC--CCCccceEEEeecCCC-CCccccccc
Q 044308          486 --SDEPIPILRYSLLPRL---TPLPLRVRLIKRHSGTLLSVMVQYVSNP-DL--PMPLNDVTFSLKLPVD-PTLLKVSPK  556 (645)
Q Consensus       486 --SyynVpILKYql~pg~---~p~PL~lr~~wk~~~tlt~V~VdY~yNP-~l--p~PLtnVq~iL~VPvd-~tlLqs~P~  556 (645)
                        ++-....|||||....   ..+||+++.+|||+++.++|+|+|+||| ..  +.+|+||+|+++|..+ .+++|++|.
T Consensus        84 l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~~Np~~~~~~~~L~nv~~~v~l~g~~~ts~~skP~  163 (257)
T PF10291_consen   84 LTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYKLNPDAFASPVPLENVVFSVPLDGGRATSAQSKPQ  163 (257)
T ss_dssp             TBT-E-EEEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEEE-TTT--E-EEEEEEEEEEEB-SS-EEEEEESSS
T ss_pred             hhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEEeChhhccccceeeeEEEEEEcCCccccccccCCC
Confidence              4444578999998744   9999999999999999999999999999 44  4589999999999888 779999999


Q ss_pred             cccccccceeeEEccCCCCCCCC--ceEEEEeecCCCCCCCCCccceEEEEEEeec-CCccccceeeeec---------C
Q 044308          557 AVLNRSDRELKWIVPEIPVKGAP--GKLRVRMPVDSSEEDGGEEIDVVCHVKFASQ-GMLSLSGVCLRPA---------T  624 (645)
Q Consensus       557 A~WN~eerrl~WkLPdIs~~gg~--G~LrAr~~~~sgpad~ps~P~~~~aVQFsse-Gs~TLSGVdlEl~---------g  624 (645)
                      |+||++++|++|+||||+..+..  |+|+|||..+.++    ++|.. ++|||.++ |. ||||++|+++         |
T Consensus       164 g~~~~e~~ri~Wrl~el~~~~~~~~~kL~ARf~~~~~~----~~p~~-v~vkF~~~~~~-~~sg~~i~~~~~~~~~dp~~  237 (257)
T PF10291_consen  164 GTWNKEKNRITWRLPELSLTSEGEGGKLIARFMTSGGP----SRPGG-VEVKFEIEGGS-TLSGLGISLVYQDDEEDPPG  237 (257)
T ss_dssp             --B-SSS-EEEEE-SSEEEETT---EEEEEEEEESS--------SS--EEEEEEE---S--SS----EEEEEESSS-TT-
T ss_pred             ccccCCCcEEEEECCcccccCCCCCceEEEEEECCCCC----CCCce-EEEEEEEcCCC-cccCcEEEEeecccccCCCC
Confidence            99999999999999999877655  8999999999995    58888 89999999 66 9999999999         9


Q ss_pred             CCccceeeccceeccceeecC
Q 044308          625 EGKTDFYEVGHKYESGVYICN  645 (645)
Q Consensus       625 ~Gyr~fslVkkRFaTG~Yl~~  645 (645)
                      .+|++ +++||||++|+|+|+
T Consensus       238 ~~w~~-~~~~r~~~sGkY~~~  257 (257)
T PF10291_consen  238 GGWRL-VLVKRKLVSGKYIAD  257 (257)
T ss_dssp             ---EE--EEEEEEEEEEEE--
T ss_pred             CcceE-EEEEEEEeeeEEecC
Confidence            99988 999999999999995

This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.

>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		645
3g9h_A		328	Suppressor of yeast profilin deletion; SYP1, MU, a	7e-36
4en2_M		266	AP-1 complex subunit MU-1; human immunodeficiency	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3ml6_A		385	Chimeric complex between protein dishevlled2 HOMO	1e-05
2vgl_M		435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	2e-05

>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Length = 328	Back alignment and structure

 Score =  136 bits (344), Expect = 7e-36
 Identities = 45/297 (15%), Positives = 100/297 (33%), Gaps = 37/297 (12%)

Query: 378 TGPDAPAPSSKDGAGTPL--DNLVKRTEMKGPEM----YIVEQVNAEFRESLLARVGLMG 431
           TG          G+ T L   +L + + +   +      I E +NA F++ +L    L+G
Sbjct: 35  TGELRELNPQATGSSTSLVGQSLFQHSSLDTSQFGLNASIAEVLNASFKDGMLQNSQLIG 94

Query: 432 AVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSSLGDGMFHVRTAPSDE-PI 490
            + L  +P            + R+   +  ++  +  + +  +    F V  +  D   +
Sbjct: 95  EIALNYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVAPEEFKVNPSFIDSRTL 154

Query: 491 PILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDL-----PMPLNDVTFSLKLP 545
             ++YS+   + P+ +    + R      SV++    +P L      + + D+   + + 
Sbjct: 155 GAIKYSIKEPIAPIVIHP--VWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNID 212

Query: 546 VDPTLLKVS-PKAVLNRSDRELKWIVPEIPV---KGAPGKLRVRMPVDSSEEDGGEEIDV 601
                  +S P+   ++  + + W   E  V    G   +L  R   D    +  + +  
Sbjct: 213 GANATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAHESAKGV-- 270

Query: 602 VCHVKFASQG--------MLSLSGVCLRPATEGKTDFY-------EVGHKYESGVYI 643
               KF              + SG+ L      + + +              +G Y 
Sbjct: 271 --ITKFTISETDNVALPHSGAGSGITLTCQELDENNPFGGEWLDVNTKRTLTTGNYH 325

PyMOL of 3g9h

>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385	Back alignment and structure

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		645
3g9h_A		328	Suppressor of yeast profilin deletion; SYP1, MU, a	100.0
1w63_M		423	Adaptor-related protein complex 1, MU 1 subunit; e	99.54
2vgl_M		435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.41
1i31_A		314	Clathrin coat assembly protein AP50; beta-sandwich	99.17
4en2_M		266	AP-1 complex subunit MU-1; human immunodeficiency	99.06
3ml6_A		385	Chimeric complex between protein dishevlled2 HOMO	99.03
3l81_A		301	AP-4 complex subunit MU-1; immunoglobulin-like bet	98.85
2vgl_S		142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	96.79
1w63_Q		158	Adapter-related protein complex 1 sigma 1A subunit	96.05
3tjz_C		153	Coatomer subunit zeta-1; protein trafficking, golg	94.38

>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=3.9e-42  Score=351.99  Aligned_cols=240  Identities=17%  Similarity=0.283  Sum_probs=191.2

Q ss_pred             ccccccc--cCCce--EEEEEEEEEEecceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhhccccccccc
Q 044308          398 LVKRTEM--KGPEM--YIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSS  473 (645)
Q Consensus       398 lv~~~e~--~~p~~--afTE~inA~FkGs~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F~pns~l~~S  473 (645)
                      ++|..||  ++|.+  +|+|+|||||||+++.||.+.|.|.+-..+...++......++|||+|++++|+++||.+++++
T Consensus        57 ~~kHpel~~~~pGLnASI~E~VNA~Fkgg~~tk~~v~GEiaLsy~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~  136 (328)
T 3g9h_A           57 LFQHSSLDTSQFGLNASIAEVLNASFKDGMLQNSQLIGEIALNYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIER  136 (328)
T ss_dssp             ----------CCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEE
T ss_pred             cccCcccCCCCCceeEEEEEEEEEEEECCcEEEEEEEEEEEEecCCCccccCCCCccEEEEecCcchhheeeCCHHHhcc
Confidence            7899999  89998  9999999999999999999999999885443211112345999999999999999999999987


Q ss_pred             CCCcceEEecCCC-CCCcceEEeeeCCCCCCCCcEEEEEEeecCceEEEEEEEEeCCCCCC-----CccceEEEeecCC-
Q 044308          474 LGDGMFHVRTAPS-DEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPM-----PLNDVTFSLKLPV-  546 (645)
Q Consensus       474 ~~tgdF~vr~~aS-yynVpILKYql~pg~~p~PL~lr~~wk~~~tlt~V~VdY~yNP~lp~-----PLtnVq~iL~VPv-  546 (645)
                      ..+++|||+...- .-.+++|||||.+  +.+||+|+.+|||+++.++|+|||+|||+.+.     +|+||+|+|+|++ 
T Consensus       137 ~~~~eF~vn~~~L~sktv~~lKYqVs~--~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa  214 (328)
T 3g9h_A          137 VAPEEFKVNPSFIDSRTLGAIKYSIKE--PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGA  214 (328)
T ss_dssp             EETTEEEECTTTTBTCEEEEEEEEEES--CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSS
T ss_pred             CCCCCEEEchHHhcccceeeEEEEECC--CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCC
Confidence            6789999986542 3569999999976  99999999999999999999999999998776     8999999998877 


Q ss_pred             CCCccccccccccccccceeeEEccC-CCCC--CCCceEEEEeecCCCCCCCCCccceEEEEEEeecCCc--------cc
Q 044308          547 DPTLLKVSPKAVLNRSDRELKWIVPE-IPVK--GAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGML--------SL  615 (645)
Q Consensus       547 d~tlLqs~P~A~WN~eerrl~WkLPd-Is~~--gg~G~LrAr~~~~sgpad~ps~P~~~~aVQFsseGs~--------TL  615 (645)
                      ..+++|++|.|+||+|++|++||||| |..+  |++|+|+|||++ +|+  +...|.. +.|||.++|..        .-
T Consensus       215 ~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~-~g~--~~~~~~g-V~akF~~~~~~~~~~~~~~~g  290 (328)
T 3g9h_A          215 NATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFIT-DGL--AHESAKG-VITKFTISETDNVALPHSGAG  290 (328)
T ss_dssp             CEEEEEESSSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEE-SSC--CCBCSSC-EEEEEEECCCSCSSCTTTTCS
T ss_pred             ceeEEEecCCceeccccCEEEEECCCCcccccCCCCCeEEEEEEc-CCC--CCCCCCc-EEEEEEEeCCCcccccccccC
Confidence            35599999999999999999999999 5433  557999999999 553  1122333 89999999985        57


Q ss_pred             cceeeeecCC--------Cccceeeccceeccceeec
Q 044308          616 SGVCLRPATE--------GKTDFYEVGHKYESGVYIC  644 (645)
Q Consensus       616 SGVdlEl~g~--------Gyr~fslVkkRFaTG~Yl~  644 (645)
                      |||.++....        -+.+ -...|+.++|+|..
T Consensus       291 sgi~i~~~~~~~~dPF~~~W~~-v~~~r~l~~G~Y~~  326 (328)
T 3g9h_A          291 SGITLTCQELDENNPFGGEWLD-VNTKRTLTTGNYHG  326 (328)
T ss_dssp             CCCEEEEEEESSSCTTCCCCEE-CEEEEEEEEEEEEE
T ss_pred             CceeEEecccccCCCCcCcccc-cceEEEEeeeEEEe
Confidence            7887764421        2333 35678999999974

PyMOL of 3g9h

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M	Back alignment and structure

>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A	Back alignment and structure

>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A	Back alignment and structure

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}	Back alignment and structure

>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}	Back alignment and structure

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S	Back alignment and structure

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		645
d2pr9a1		277	b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s	6e-12

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277	Back information, alignment and structure


class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.3 bits (156), Expect = 6e-12
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 29/237 (12%)

Query: 408 EMY--IVEQVNAEF-RESLLARVGLMGAVYLRT----MPKKTSGDDKDTEFSFRVEGTSA 460
           E++  ++E VN     +  +    + G V +++    MP+   G   + +     +G   
Sbjct: 14  ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG--MNDKIVIEKQGKGT 71

Query: 461 VKRFAVQSSKVSSLGDGMFH-------------VRTAPSDEPIPILRYSLLPRLTPLPLR 507
               +    +  ++ D  FH             +   P D    ++RY     +      
Sbjct: 72  ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 131

Query: 508 VRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVD---PTLLKVSPKAVLNRSDR 564
           + L++    T L V V   SN    +    +   +  P++     ++ +  KA    S+ 
Sbjct: 132 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 191

Query: 565 ELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLR 621
            + W +  +       ++   + +  + +        +  + F  +   + SG+ +R
Sbjct: 192 AIVWKIKRMA-GMKESQISAEIELLPTNDKKKWARPPIS-MNF--EVPFAPSGLKVR 244

PyMOL of d2pr9a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		645
d2pr9a1		277	Second domain of Mu2 adaptin subunit (ap50) of ap2	99.42
d2vgls_		142	Sigma2 adaptin (clathrin coat assembly protein AP1	97.1
d2vglm2		141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.87

>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=8.9e-12  Score=119.70  Aligned_cols=224  Identities=18%  Similarity=0.259  Sum_probs=155.8

Q ss_pred             eEEEEEEEEEE-ecceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhh-------ccccccccc-CCCcce
Q 044308          409 MYIVEQVNAEF-RESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRF-------AVQSSKVSS-LGDGMF  479 (645)
Q Consensus       409 ~afTE~inA~F-kGs~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F-------~pns~l~~S-~~tgdF  479 (645)
                      +-++|.+++-+ +.|.+++..+.|.|.++.-..-.+      .+++.|.+...+..-       .+....... .++=.|
T Consensus        17 vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P------~~~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~f   90 (277)
T d2pr9a1          17 LDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP------ECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTF   90 (277)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSC------EEEEEESBC------------------CCCBCCSEEEE
T ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCC------eEEEEecchhhcccccccccccccccccCceEccceee
Confidence            34899999999 668899999999999998777666      777777665443221       111111111 122222


Q ss_pred             E-------------EecCCCCCCcceEEeeeCCCCCCCCcEEEE-EEeecCceEEEEEEEEeCCCCCCCccceEEEeecC
Q 044308          480 H-------------VRTAPSDEPIPILRYSLLPRLTPLPLRVRL-IKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLP  545 (645)
Q Consensus       480 ~-------------vr~~aSyynVpILKYql~pg~~p~PL~lr~-~wk~~~tlt~V~VdY~yNP~lp~PLtnVq~iL~VP  545 (645)
                      |             ++..|+.-.++||+|++... ..+||.+.. ....+++.++++|+++.|......+.||+|.+|+|
T Consensus        91 H~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~-~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~I~iP~P  169 (277)
T d2pr9a1          91 HQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD-IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP  169 (277)
T ss_dssp             CTTSBCC-----CCEEECCCSEEEEEEEEEECSS-CCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECC
T ss_pred             eeccccccccccceEeecCCCCcEEEEEEEcCCC-cCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeeeEEEEEeeCC
Confidence            2             34567777899999999864 456777754 44567788999999999887778899999999999


Q ss_pred             CCCCc--ccc-ccccccccccceeeEEccCCCCCCCCceEEEEeecCCCCCCCCC-ccceEEEEEEeecCCccccceeee
Q 044308          546 VDPTL--LKV-SPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGE-EIDVVCHVKFASQGMLSLSGVCLR  621 (645)
Q Consensus       546 vd~tl--Lqs-~P~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpad~ps-~P~~~~aVQFsseGs~TLSGVdlE  621 (645)
                      ...+.  +++ .-.+.|+.+++.+.|+|+.++ .+..-+|++++.+.+.. +.+. .-.+ +.|+|.-.  .|+||+.++
T Consensus       170 ~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~-~~~~~~l~~~~~~~~~~-~~~~~~~~p-i~v~F~ip--~t~Sgl~V~  244 (277)
T d2pr9a1         170 LNTSGVQVICMKGKAKYKASENAIVWKIKRMA-GMKESQISAEIELLPTN-DKKKWARPP-ISMNFEVP--FAPSGLKVR  244 (277)
T ss_dssp             TTEEEEEEEESSSEEEEEGGGTEEEEEEEEEE-TTCEEEEEEEEEECCCC-SSSCCCCCC-EEEEEEES--SCTTCCCEE
T ss_pred             CcccCceEEecCceEEEeccCCEEEEeccccc-CCccceEEEEEEeccCC-CCccccCCc-EEEEEEec--ccccceEEE
Confidence            77663  444 345889999999999999996 23445899999887764 2232 2334 79999985  489998653


Q ss_pred             ---ec-----CCCccceeeccceeccceeec
Q 044308          622 ---PA-----TEGKTDFYEVGHKYESGVYIC  644 (645)
Q Consensus       622 ---l~-----g~Gyr~fslVkkRFaTG~Yl~  644 (645)
                         +.     ..+|..|.-||--=.+|.|-+
T Consensus       245 ~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~  275 (277)
T d2pr9a1         245 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYET  275 (277)
T ss_dssp             EEEEECSSSSCCGGGSEEEEEEEEEEEEEEE
T ss_pred             EEEEeccccCCCCCCCCCCEEEEEECCCEEE
Confidence               32     245777777776666788854

PyMOL of d2pr9a1