Citrus Sinensis ID: 044313

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHcccccccHHHHHHHHHHHHcEEEcccccccc
cccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccEEcccHHHHHHHHHccEEcccccccccHHEEcccccccccccEEEEEEEEEccHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccccc
ilrekkfkqtipqvkigdrgeeitpEIATTALRRAVNIFSALqsshghwpadnsgplffntPMVICLYITGHLNIIFSTEHRKEMLRYICNhqnedggwglhveghstMFGTVFNYICMRLlgegpdggensgctRARKWILdrggatgipswgkTWLSILGVydwsgcnpmppefwklphflpispgkllcycrltympmsyfygkrfvgpitplVLQLREEIYIQPYDEINWSKLRHLCakedlffphttVQNLLWDALHnqvepvlnrwplnkLREKSLEAAMTHIHyedeasrymtigcvekplnmlscwaedpngdyfKKHLARIGEYfwmgedgmrvq
ilrekkfkqtipqvkigdrgeeiTPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILdrggatgipswGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYfwmgedgmrvq
ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ
**********************ITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMG*******
IL************************IATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ
ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ
****KKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGED*****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
E7DN63 761 Beta-amyrin synthase OS=S N/A no 0.997 0.450 0.712 1e-154
O82146 761 Beta-Amyrin Synthase 2 OS N/A no 0.997 0.450 0.715 1e-153
O82140 763 Beta-Amyrin Synthase 1 OS N/A no 0.997 0.449 0.712 1e-153
E2IUA9 765 Lupeol synthase OS=Kalanc N/A no 0.997 0.448 0.698 1e-151
Q8W3Z1 779 Beta-amyrin synthase OS=B N/A no 0.997 0.440 0.695 1e-151
E2IUA7 767 Glutinol synthase OS=Kala N/A no 0.997 0.447 0.692 1e-151
E2IUA6 779 Taraxerol synthase OS=Kal N/A no 0.997 0.440 0.689 1e-150
A8C980 759 Germanicol synthase OS=Rh N/A no 0.997 0.451 0.707 1e-150
E7DN64 763 Delta-amyrin synthase OS= N/A no 0.997 0.449 0.688 1e-149
E2IUA8 767 Friedelin synthase OS=Kal N/A no 0.997 0.447 0.675 1e-148
>sp|E7DN63|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  543 bits (1399), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 245/344 (71%), Positives = 286/344 (83%), Gaps = 1/344 (0%)

Query: 1   ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
            L EK FKQ IP VK+ + GEEI+ E+AT AL RAVN FSALQ++ GHWPA+N+GPLFF 
Sbjct: 68  FLGEKNFKQKIPAVKV-EEGEEISHEVATIALHRAVNFFSALQATDGHWPAENAGPLFFL 126

Query: 61  TPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMR 120
            P+V+C+YITGHLN +F  EHRKE+LRYI  HQNEDGGWGLH+EGHSTMF T  +YICMR
Sbjct: 127 PPLVMCMYITGHLNTVFPAEHRKEILRYIYCHQNEDGGWGLHIEGHSTMFCTALSYICMR 186

Query: 121 LLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLP 180
           +LGEGPDGG N+ C RARKWILD G  T IPSWGKTWLSILGV++W G NPMPPEFW LP
Sbjct: 187 ILGEGPDGGVNNACARARKWILDHGSVTAIPSWGKTWLSILGVFEWIGTNPMPPEFWILP 246

Query: 181 HFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHL 240
            FLP+ P K+ CYCR+ YMPMSY YGKRFVGPITPL+LQLREE+Y +PYDEINW K+RH+
Sbjct: 247 SFLPVHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYDRPYDEINWKKVRHV 306

Query: 241 CAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMT 300
           CAKEDL++PH  VQ+L+WD+L+   EP+L RWP NKLR K+LE  M HIHYEDE SRY+T
Sbjct: 307 CAKEDLYYPHPLVQDLMWDSLYICTEPLLTRWPFNKLRNKALEVTMKHIHYEDENSRYIT 366

Query: 301 IGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ 344
           IGCVEK L ML+CW EDPNGDYFKKHLARI +Y W+ EDGM++Q
Sbjct: 367 IGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYLWVAEDGMKMQ 410
Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Solanum lycopersicum (taxid: 4081)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9
>sp|O82146|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1 Back     alignment and function description
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1 Back     alignment and function description
>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 Back     alignment and function description
>sp|E2IUA7|GLUTS_KALDA Glutinol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 Back     alignment and function description
>sp|E7DN64|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1 Back     alignment and function description
>sp|E2IUA8|FRIES_KALDA Friedelin synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
300431227 763 beta-amyrin synthase [Aralia elata] 0.997 0.449 0.715 1e-153
350538549 761 beta-amyrin synthase [Solanum lycopersic 0.997 0.450 0.712 1e-152
75220217 761 RecName: Full=Beta-Amyrin Synthase 2 gi| 0.997 0.450 0.715 1e-151
75220214 763 RecName: Full=Beta-Amyrin Synthase 1 gi| 0.997 0.449 0.712 1e-151
225443446 757 PREDICTED: beta-amyrin synthase [Vitis v 0.997 0.453 0.703 1e-150
147839872 729 hypothetical protein VITISV_001242 [Viti 0.997 0.470 0.703 1e-150
403399452 765 RecName: Full=Lupeol synthase; Short=KdL 0.997 0.448 0.698 1e-150
116292146 761 multifunctional triterpene synthase [Kan 0.997 0.450 0.715 1e-149
392621787 763 lupeol synthase [Eleutherococcus trifoli 0.997 0.449 0.697 1e-149
75248718 779 RecName: Full=Beta-amyrin synthase gi|18 0.997 0.440 0.695 1e-149
>gi|300431227|gb|ADK12003.1| beta-amyrin synthase [Aralia elata] Back     alignment and taxonomy information
 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 246/344 (71%), Positives = 287/344 (83%), Gaps = 1/344 (0%)

Query: 1   ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
            LREK FKQTIPQVK+GD  E +T E ATT LRRAV+ FSALQ+S GHWPA+N+GPLFF 
Sbjct: 70  FLREKNFKQTIPQVKVGD-DEAVTYEAATTTLRRAVHFFSALQASDGHWPAENAGPLFFL 128

Query: 61  TPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMR 120
            P+V+C+YITGHL+ +F  EHRKE+LRYI  HQNEDGGWG H+EGHSTMF T  +YICMR
Sbjct: 129 PPLVMCVYITGHLDTVFPAEHRKEILRYIYCHQNEDGGWGFHIEGHSTMFCTTLSYICMR 188

Query: 121 LLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLP 180
           +LGEGPDGG N+ C R RKWILD G  T IPSWGKTWLSILGVY+W+G NPMPPEFW LP
Sbjct: 189 ILGEGPDGGVNNACVRGRKWILDHGSVTAIPSWGKTWLSILGVYEWTGSNPMPPEFWILP 248

Query: 181 HFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHL 240
            FLP+ P K+ CYCR+ YMPMSY YGKRFVGPITPL+LQLREE+Y QPY+EINW K RH+
Sbjct: 249 SFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYAQPYNEINWRKTRHV 308

Query: 241 CAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMT 300
           CAKED+++PH  +Q+LLWD+L+   EP+L RWP NKLREK+L+  M HIHYEDE SRY+T
Sbjct: 309 CAKEDIYYPHPLIQDLLWDSLYVLTEPLLTRWPFNKLREKALQTTMKHIHYEDENSRYIT 368

Query: 301 IGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ 344
           IGCVEK L ML+CW EDPNGDYFKKHLARI +Y W+ EDGM++Q
Sbjct: 369 IGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYIWVAEDGMKMQ 412

Source: Aralia elata

Species: Aralia elata

Genus: Aralia

Family: Araliaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|350538549|ref|NP_001234604.1| beta-amyrin synthase [Solanum lycopersicum] gi|357580425|sp|E7DN63.1|BAMS_SOLLC RecName: Full=Beta-amyrin synthase; AltName: Full=Triterpenoid synthase 1; Short=SlTTS1 gi|315613943|gb|ADU52574.1| beta-amyrin synthase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|75220217|sp|O82146.1|BAMS2_PANGI RecName: Full=Beta-Amyrin Synthase 2 gi|3721856|dbj|BAA33722.1| beta-Amyrin Synthase [Panax ginseng] Back     alignment and taxonomy information
>gi|75220214|sp|O82140.1|BAMS1_PANGI RecName: Full=Beta-Amyrin Synthase 1 gi|3688600|dbj|BAA33461.1| beta-Amyrin Synthase [Panax ginseng] Back     alignment and taxonomy information
>gi|225443446|ref|XP_002270934.1| PREDICTED: beta-amyrin synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147839872|emb|CAN65909.1| hypothetical protein VITISV_001242 [Vitis vinifera] Back     alignment and taxonomy information
>gi|403399452|sp|E2IUA9.1|LUPS_KALDA RecName: Full=Lupeol synthase; Short=KdLUS gi|300807980|gb|ADK35126.1| lupeol synthase [Kalanchoe daigremontiana] Back     alignment and taxonomy information
>gi|116292146|dbj|BAF35580.1| multifunctional triterpene synthase [Kandelia candel] Back     alignment and taxonomy information
>gi|392621787|gb|AFM82492.1| lupeol synthase [Eleutherococcus trifoliatus] Back     alignment and taxonomy information
>gi|75248718|sp|Q8W3Z1.1|BAMS_BETPL RecName: Full=Beta-amyrin synthase gi|18147596|dbj|BAB83088.1| beta-amyrin synthase [Betula platyphylla] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
UNIPROTKB|Q8W3Z1 779 OSCBPY "Beta-amyrin synthase" 0.994 0.439 0.697 1.7e-144
UNIPROTKB|E2IUA9 765 E2IUA9 "Lupeol synthase" [Kala 0.994 0.447 0.700 2.8e-144
UNIPROTKB|E2IUA7 767 E2IUA7 "Glutinol synthase" [Ka 0.994 0.445 0.694 9.6e-144
UNIPROTKB|E2IUA6 779 E2IUA6 "Taraxerol synthase" [K 0.994 0.439 0.691 6.8e-143
UNIPROTKB|A8CDT2 759 BAS "Beta-amyrin synthase" [Br 0.994 0.450 0.697 2.1e-141
UNIPROTKB|Q2XPU7 769 Q2XPU7 "Lupeol synthase" [Rici 0.994 0.444 0.696 8.9e-141
UNIPROTKB|E2IUA8 767 E2IUA8 "Friedelin synthase" [K 0.994 0.445 0.677 3e-140
TAIR|locus:2207315 759 BAS "beta-amyrin synthase" [Ar 0.994 0.450 0.688 3.5e-139
UNIPROTKB|A8CDT3 761 LUS "Lupeol synthase" [Bruguie 0.994 0.449 0.696 1.3e-137
TAIR|locus:504956092 769 CAMS1 "AT1G78955" [Arabidopsis 0.994 0.444 0.686 1.7e-137
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
 Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
 Identities = 240/344 (69%), Positives = 290/344 (84%)

Query:     2 LREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNT 61
             L+EK FKQTIP VK+ D GEEIT E +T ALRRAV+ +SALQ+S GHWPA+N+GPLFF  
Sbjct:    69 LKEKNFKQTIPPVKVED-GEEITYEKSTAALRRAVHFYSALQASDGHWPAENAGPLFFLP 127

Query:    62 PMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRL 121
             P+V+C+YITGHLN +F  EH+KE+LRYI  HQNEDGGWGLH+EGHSTMF T  +YICMR+
Sbjct:   128 PLVMCMYITGHLNTVFPAEHQKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALSYICMRI 187

Query:   122 LGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPH 181
             LGEGPDGG+++ C RARKWILD GG T +PSWGKTWLSILG+++W G NPMPPEFW LP 
Sbjct:   188 LGEGPDGGQDNACARARKWILDHGGVTHMPSWGKTWLSILGIFEWIGSNPMPPEFWILPS 247

Query:   182 FLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLC 241
             FLP+ P K+ CYCR+ YMPMSY YGKRFVGPITPL+LQLREE+Y QPY ++NW K+RHLC
Sbjct:   248 FLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYTQPYHQVNWKKVRHLC 307

Query:   242 AKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKL-REKSLEAAMTHIHYEDEASRYMT 300
             AKED+++PH  +Q+LLWD+L+   EP+L RWP NKL REK+L+  M HIHYEDE SRY+T
Sbjct:   308 AKEDIYYPHPLIQDLLWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDENSRYIT 367

Query:   301 IGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ 344
             IGCVEK L ML+CW EDPNGDYFKKH+ARI +Y W+ EDG+++Q
Sbjct:   368 IGCVEKVLCMLACWVEDPNGDYFKKHIARIPDYIWVAEDGIKMQ 411
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA
GO:0042300 "beta-amyrin synthase activity" evidence=IDA
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
TAIR|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
TAIR|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN02993 763 PLN02993, PLN02993, lupeol synthase 0.0
PLN03012 759 PLN03012, PLN03012, Camelliol C synthase 0.0
cd02892 634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 1e-140
TIGR01787 621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 1e-112
TIGR03463 634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 8e-76
TIGR01507 635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 9e-15
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 4e-09
COG1657 517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 1e-07
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 3e-06
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-05
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 5e-05
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 4e-04
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 5e-04
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 0.001
TIGR04277 624 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol 0.001
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score =  576 bits (1485), Expect = 0.0
 Identities = 241/345 (69%), Positives = 280/345 (81%), Gaps = 2/345 (0%)

Query: 1   ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
            L+E KF+Q IP VKI DRGEEIT E AT ALRR V+ FSALQ+S GHWP + +GPLFF 
Sbjct: 69  FLKEAKFEQVIPPVKI-DRGEEITYETATNALRRGVSFFSALQASDGHWPGEITGPLFFL 127

Query: 61  TPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMR 120
            P+V CLYITGHL  +F  EHRKEMLR+I  HQNEDGGWGLH+E  S MF TV NYIC+R
Sbjct: 128 PPLVFCLYITGHLEEVFDAEHRKEMLRHIYCHQNEDGGWGLHIESKSVMFCTVLNYICLR 187

Query: 121 LLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLP 180
           +LGEGP+GG  + C RAR+WILD GG T IPSWGK WLSILG+YDWSG NPMPPE W LP
Sbjct: 188 MLGEGPNGGRENACKRARQWILDHGGVTYIPSWGKFWLSILGIYDWSGTNPMPPEIWLLP 247

Query: 181 HFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHL 240
            FLPI  GK LCY R+ YMPMSY YGKRFVGPITPL++ LREE+++QPY+EINW+K R L
Sbjct: 248 SFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRL 307

Query: 241 CAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKL-REKSLEAAMTHIHYEDEASRYM 299
           CAKED+++PH  VQ+L+WD LHN VEP L RWPLNKL REK+L+ AM HIHYEDE S Y+
Sbjct: 308 CAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIHYEDENSHYI 367

Query: 300 TIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGEDGMRVQ 344
           TIGCVEK L ML+CW E+PNGD+FKKHLARI +Y W+ EDGM++Q
Sbjct: 368 TIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQ 412

Length = 763
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN03012 759 Camelliol C synthase 100.0
PLN02993 763 lupeol synthase 100.0
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
TIGR03463 634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
cd02892 634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
TIGR01507 635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
TIGR01787 621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
COG1657 517 SqhC Squalene cyclase [Lipid metabolism] 99.75
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.73
PLN03012759 Camelliol C synthase 99.69
PLN02993763 lupeol synthase 99.67
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.59
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.57
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.54
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.49
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.39
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.36
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.32
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.25
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.21
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.21
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.18
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.14
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.14
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.11
cd00688300 ISOPREN_C2_like This group contains class II terpe 98.99
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 98.9
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 98.9
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 98.9
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.78
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 98.72
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 98.65
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 98.65
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.64
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.62
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 98.62
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 98.61
PLN02710439 farnesyltranstransferase subunit beta 98.56
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.5
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 98.46
PLN02710439 farnesyltranstransferase subunit beta 98.46
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 98.44
KOG0366329 consensus Protein geranylgeranyltransferase type I 98.31
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.26
KOG0367347 consensus Protein geranylgeranyltransferase Type I 97.97
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 97.85
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 97.78
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 97.76
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 97.63
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 97.62
KOG0367347 consensus Protein geranylgeranyltransferase Type I 97.06
PLN02592 800 ent-copalyl diphosphate synthase 96.79
PF07678246 A2M_comp: A-macroglobulin complement component; In 96.43
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 96.32
PLN02279 784 ent-kaur-16-ene synthase 96.29
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 96.25
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 96.21
KOG0366329 consensus Protein geranylgeranyltransferase type I 95.99
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 94.93
COG1689274 Uncharacterized protein conserved in archaea [Func 93.88
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 93.77
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 92.81
COG1689274 Uncharacterized protein conserved in archaea [Func 89.56
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 87.48
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 81.68
>PLN03012 Camelliol C synthase Back     alignment and domain information 
Probab=100.00  E-value=9.4e-98  Score=779.55  Aligned_cols=343  Identities=70%  Similarity=1.329  Sum_probs=332.2

Q ss_pred             CcccccccCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHH
Q 044313            1 ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTE   80 (344)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~   80 (344)
                      +.||+++++.+|+||+++ +++||.+.+.+|++||++|++++|.+||||++|++|++|++|++|+++|++|..|++++++
T Consensus        69 ~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~  147 (759)
T PLN03012         69 FLKEKKFEQRIAPAKVED-AEKITFEIATNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQD  147 (759)
T ss_pred             HHhccCcccCCCcccCCC-CcccchHHHHHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHH
Confidence            368999999999999987 7889999999999999999999999999999999999999999999999999988888999


Q ss_pred             HHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 044313           81 HRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSI  160 (344)
Q Consensus        81 ~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl  160 (344)
                      .++++++||+++||+|||||+|++|+|+||+|++||+|||++|+++|+..||+|+|||+||+++||++++|+|||||||+
T Consensus       148 ~~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~  227 (759)
T PLN03012        148 HRKEILRYIYCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSI  227 (759)
T ss_pred             HHHHHHHHHHHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999532379999999999999999999999999999


Q ss_pred             hCCcCCCCCCCCCCccccCCCCCCCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhccc
Q 044313          161 LGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHL  240 (344)
Q Consensus       161 ~G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~  240 (344)
                      +|+|+|+++|+|||||||||+|||||||+||||+|+|||||+|||++||++|++|++.+||+|||++||++|+|.++|++
T Consensus       228 lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~  307 (759)
T PLN03012        228 LGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHL  307 (759)
T ss_pred             cCccccCCCCCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCchhhHHHHHHHHHHhhhhcccCCCCh-HHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccCCC
Q 044313          241 CAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLN-KLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPN  319 (344)
Q Consensus       241 ~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~-~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~p~  319 (344)
                      ||++|+|+|++++++++|..++.++|+++..++++ +||++|+++|++||++|+++|.|++|+||+++||||+||+++|+
T Consensus       308 ~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~  387 (759)
T PLN03012        308 CAKEDAYCPHPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPN  387 (759)
T ss_pred             cccccccCCchHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999888754 69999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhhccceEecCCccccC
Q 044313          320 GDYFKKHLARIGEYFWMGEDGMRVQ  344 (344)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~G~~~q  344 (344)
                      ||.||+|++||+||+|+++|||+||
T Consensus       388 ~~~~k~hl~ri~d~lw~~~dGm~~q  412 (759)
T PLN03012        388 GDHFKKHLLRISDYLWIAEDGMKMQ  412 (759)
T ss_pred             CHHHHHHHHHhhhcEEEeCCceEEc
Confidence            9999999999999999999999998

>PLN02993 lupeol synthase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1w6k_A 732 Structure Of Human Osc In Complex With Lanosterol L 1e-58
1w6j_A 732 Structure Of Human Osc In Complex With Ro 48-8071 L 2e-58
1gsz_A 631 Crystal Structure Of A Squalene Cyclase In Complex 1e-12
2sqc_A 631 Squalene-Hopene Cyclase From Alicyclobacillus Acido 1e-12
3sqc_A 631 Squalene-Hopene Cyclase Length = 631 1e-12
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 186/321 (57%), Gaps = 15/321 (4%)
Query: 28  ATTALRRAVN---IFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKE 84
           A TA   A+N    +  LQ+  GHW  D  GPLF    ++I  ++     I     +R+E
Sbjct: 70  AHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREE 126
Query: 85  MLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144
           ++RY+ + Q  DGGWGLH+E  ST+FGT  NY+ +R+LG GPD   +    RAR  +  +
Sbjct: 127 IVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPD---DPDLVRARNILHKK 183
Query: 145 GGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYF 204
           GGA  IPSWGK WL++L VY W G N + PE W  P + P  P  L C+CR  Y+PMSY 
Sbjct: 184 GGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYC 243
Query: 205 YGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQ 264
           Y  R      PLV  LR+E+Y++ +  I+W   R+  A ++L+ PH+ +  +++ AL N 
Sbjct: 244 YAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVY-ALLNL 302
Query: 265 VEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAED-PNGDYF 323
            E   +      LR+++++    HI  +D  ++ ++IG + K +NML  W  D P    F
Sbjct: 303 YEHHHS----AHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAF 358
Query: 324 KKHLARIGEYFWMGEDGMRVQ 344
           ++H++RI +Y WMG DGM++Q
Sbjct: 359 QEHVSRIPDYLWMGLDGMKMQ 379
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 Back     alignment and structure
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 Back     alignment and structure
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 1e-108
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 9e-83
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  331 bits (849), Expect = e-108
 Identities = 119/344 (34%), Positives = 187/344 (54%), Gaps = 23/344 (6%)

Query: 2   LREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNT 61
           L  K + + +P+              A       +  +  LQ+  GHW  D  GPLF   
Sbjct: 58  LDTKNYFKDLPKAHT-----------AFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLP 106

Query: 62  PMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRL 121
            ++I  ++     I     +R+E++RY+ + Q  DGGWGLH+E  ST+FGT  NY+ +R+
Sbjct: 107 GLLITCHVAR---IPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRI 163

Query: 122 LGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPH 181
           LG GPD   +    RAR  +  +GGA  IPSWGK WL++L VY W G N + PE W  P 
Sbjct: 164 LGVGPD---DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPD 220

Query: 182 FLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLC 241
           + P  P  L C+CR  Y+PMSY Y  R      PLV  LR+E+Y++ +  I+W   R+  
Sbjct: 221 WAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNV 280

Query: 242 AKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTI 301
           A ++L+ PH+ +  +++  L+     +        LR+++++    HI  +D  ++ ++I
Sbjct: 281 APDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISI 335

Query: 302 GCVEKPLNMLSCW-AEDPNGDYFKKHLARIGEYFWMGEDGMRVQ 344
           G + K +NML  W  + P    F++H++RI +Y WMG DGM++Q
Sbjct: 336 GPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQ 379
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 99.4
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.37
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.36
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.36
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.36
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 99.32
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.21
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 99.16
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.13
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.12
2wy7_A310 Complement C3D fragment; immune system, immune res 99.07
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.85
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 98.8
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 98.8
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.71
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.55
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.51
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.51
2wy7_A310 Complement C3D fragment; immune system, immune res 98.5
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.24
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.24
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.15
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 98.13
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 97.98
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 97.93
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.89
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 97.89
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.83
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.61
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 97.58
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.44
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 97.38
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.31
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.28
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 96.99
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 96.9
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.85
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.51
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 96.51
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.43
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 94.66
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 90.6
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 88.19
3prx_B 1642 Cobra venom factor; immune system, complement, imm 86.46
3pmm_A382 Putative cytoplasmic protein; structural genomics, 82.9
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=100.00  E-value=1e-82  Score=673.95  Aligned_cols=310  Identities=38%  Similarity=0.791  Sum_probs=296.7

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 044313           24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV  103 (344)
Q Consensus        24 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~  103 (344)
                      ..+++.+|++++++||+++|.+||||++|+++++|+++++|+++|++|.   .++++.++++++||+++||+|||||+|+
T Consensus        69 ~~~~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~DGgWgl~~  145 (732)
T 1w6k_A           69 KAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHI  145 (732)
T ss_dssp             CCCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBT
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhcCCCCCccCCc
Confidence            4557999999999999999999999999999999999999999999985   4556789999999999999999999999


Q ss_pred             CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCC
Q 044313          104 EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFL  183 (344)
Q Consensus       104 ~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~  183 (344)
                      +|+|++++|++||+|||++|+++++   |+|+|||+||+++||++++|+|||||||++|+|+|+++|+|||||||||+||
T Consensus       146 ~~~s~~~~T~~~Y~aLrl~G~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~  222 (732)
T 1w6k_A          146 EDKSTVFGTALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWA  222 (732)
T ss_dssp             TSCCBHHHHHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTS
T ss_pred             CCCccHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcC
Confidence            9999999999999999999999998   9999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHH
Q 044313          184 PISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHN  263 (344)
Q Consensus       184 P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~  263 (344)
                      |||||+||||+|+|||||+||+++||+++.+|++.+||+|||++||++|+|.++|+.|+++|+|+|++.++..++..+ +
T Consensus       223 p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~  301 (732)
T 1w6k_A          223 PAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-N  301 (732)
T ss_dssp             TTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-H
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-H
Confidence            999999999999999999999999999998999999999999999999999999999999999999999998887766 6


Q ss_pred             hhhhcccCCCChHHHHHHHHHHHhHHHhhhcCCcccccccccccccccccccc-CCCcHHHHHHHHhhccceEecCCccc
Q 044313          264 QVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAE-DPNGDYFKKHLARIGEYFWMGEDGMR  342 (344)
Q Consensus       264 ~~e~~~~~~~~~~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~-~p~~~~~~~~~~~l~~~l~~~~~G~~  342 (344)
                      .+|+++    ++++|++|++++++||++++++++|++|+||++++||+++|.+ +|+||.|++|+++|++|+|+.+|||+
T Consensus       302 ~~e~~~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~  377 (732)
T 1w6k_A          302 LYEHHH----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMK  377 (732)
T ss_dssp             HHHHTC----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEE
T ss_pred             HhhhcC----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCce
Confidence            777765    4779999999999999999999999999999999999999984 69999999999999999999999999


Q ss_pred             cC
Q 044313          343 VQ  344 (344)
Q Consensus       343 ~q  344 (344)
                      +|
T Consensus       378 ~q  379 (732)
T 1w6k_A          378 MQ  379 (732)
T ss_dssp             EC
T ss_pred             eC
Confidence            87
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 1e-133
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 5e-76
d1w6ka1 448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 4e-11
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 1e-05
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 0.001
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 0.002
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 0.002
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  379 bits (975), Expect = e-133
 Identities = 108/290 (37%), Positives = 169/290 (58%), Gaps = 12/290 (4%)

Query: 55  GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVF 114
           GPLF    ++I  ++     I     +R+E++RY+ + Q  DGGWGLH+E  ST+FGT  
Sbjct: 1   GPLFLLPGLLITCHVAR---IPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTAL 57

Query: 115 NYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPP 174
           NY+ +R+LG GPD   +    RAR  +  +GGA  IPSWGK WL++L VY W G N + P
Sbjct: 58  NYVSLRILGVGPD---DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFP 114

Query: 175 EFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINW 234
           E W  P + P  P  L C+CR  Y+PMSY Y  R      PLV  LR+E+Y++ +  I+W
Sbjct: 115 EMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDW 174

Query: 235 SKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDE 294
              R+  A ++L+ PH+ +  +++  L+     +        LR+++++    HI  +D 
Sbjct: 175 LAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADDR 229

Query: 295 ASRYMTIGCVEKPLNMLSCWA-EDPNGDYFKKHLARIGEYFWMGEDGMRV 343
            ++ ++IG + K +NML  W  + P    F++H++RI +Y WMG DGM++
Sbjct: 230 FTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKM 279
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.64
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.64
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.4
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.17
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.06
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 98.85
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 98.83
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.74
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 98.69
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 98.67
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.39
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.28
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.16
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.08
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 97.73
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 97.52
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 97.51
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.33
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 96.52
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 96.48
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-87  Score=628.01  Aligned_cols=278  Identities=39%  Similarity=0.834  Sum_probs=266.7

Q ss_pred             CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHH
Q 044313           55 GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGC  134 (344)
Q Consensus        55 ~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m  134 (344)
                      |++|+++++|+++|++|.   +++++.++++++||+++||+|||||+|++|+|++++|++||+|||++|+++++   |+|
T Consensus         1 gp~f~~p~~Vial~i~g~---~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~---p~m   74 (279)
T d1w6ka2           1 GPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD---PDL   74 (279)
T ss_dssp             CBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTS---HHH
T ss_pred             CCchhhhHHHHHHhhcCC---CCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCc---HHH
Confidence            688999999999999995   67789999999999999999999999999999999999999999999999998   999


Q ss_pred             HHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCCCCCcCCcchhcchhhhhhhhhhcCcccccCC
Q 044313          135 TRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPIT  214 (344)
Q Consensus       135 ~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~  214 (344)
                      +|||+||+++||++++|+|||+|||++|+|+|+++|+||+|+||||+|||||+|+||||+|+|||||+||+++||++|++
T Consensus        75 ~rAr~wI~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~E~~lLP~w~P~~~~~~~~~~R~v~vPls~l~~~r~~~~~~  154 (279)
T d1w6ka2          75 VRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAED  154 (279)
T ss_dssp             HHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHhCCCccccchHHHHHHHHcCccccccCCCCCHHHHhccccCccchHHhhhhhhhhhhhhHHHhhccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHHhhhhcccCCCChHHHHHHHHHHHhHHHhhhc
Q 044313          215 PLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDE  294 (344)
Q Consensus       215 ~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~~~~~i~~~~~  294 (344)
                      |+..+||+|||.+||++++|.+.|++|+++|+|+|++++++.++..+ +.+|+    +++++||++|+++|++||++|||
T Consensus       155 p~~~~lr~el~~~p~~~i~~~~~r~~~~~~d~~~~~~~~~~~~d~~l-~~~e~----~~~~~lR~~Al~~a~~~i~~ede  229 (279)
T d1w6ka2         155 PLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEH----HHSAHLRQRAVQKLYEHIVADDR  229 (279)
T ss_dssp             HHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhccCCccccccccccCccCccccCCCcHHHHHHHHHHH-HHhhc----cCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988885555 45554    56788999999999999999999


Q ss_pred             CCcccccccccccccccccc-ccCCCcHHHHHHHHhhccceEecCCcccc
Q 044313          295 ASRYMTIGCVEKPLNMLSCW-AEDPNGDYFKKHLARIGEYFWMGEDGMRV  343 (344)
Q Consensus       295 ~t~~~~i~~v~~~l~~l~~~-~~~p~~~~~~~~~~~l~~~l~~~~~G~~~  343 (344)
                      +|+|+||||||+++|||+|| .|+|||+.||+|++||.||+|++||||+|
T Consensus       230 ~t~~~glg~i~~~lnml~~~~~e~p~s~~~k~hl~ri~dy~W~~edGm~m  279 (279)
T d1w6ka2         230 FTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKM  279 (279)
T ss_dssp             HHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEE
T ss_pred             cCCCCcccchHHHHHHHHHHHccCCCcHHHHHHHHhcccceeECcccCCC
Confidence            99999999999999999999 57899999999999999999999999997
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure