Citrus Sinensis ID: 044321
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.952 | 0.345 | 0.690 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.952 | 0.345 | 0.680 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.953 | 0.344 | 0.672 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.969 | 0.354 | 0.632 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.934 | 0.337 | 0.654 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.957 | 0.344 | 0.636 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.967 | 0.343 | 0.621 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.944 | 0.336 | 0.627 | 1e-180 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.955 | 0.341 | 0.630 | 1e-180 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.955 | 0.341 | 0.628 | 1e-179 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/523 (69%), Positives = 431/523 (82%), Gaps = 27/523 (5%)
Query: 13 NSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGILTTSRG 72
SLRA S+WR+N V FS SSR+E DDEEAL WAA LEKLPT++RL+KG+L S+G
Sbjct: 20 GSLRANSNSIWRNNGVEI--FSRSSRDE-DDEEALKWAA-LEKLPTFDRLRKGLLFGSQG 75
Query: 73 EANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNV 132
A EVD+N+LG QER+ L+E+LVKVA+ NE+FLLKLKNRI RVGI LPTIEVR+EHLN+
Sbjct: 76 AAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNI 135
Query: 133 EAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGP 192
+A+AYVGSR+LPTF NF N VE LNSL+IL SRK+ LTILKD+SGII+P RMTLLLGP
Sbjct: 136 DADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGP 195
Query: 193 PGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRET 233
P S KTTLLLALAGKLD +LK ISQHD+HIGEMTVRET
Sbjct: 196 PSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRET 255
Query: 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293
L FSARCQGVGSR+EMLAEL+RREKAA IKPD DID++MKAAATEGQE +V+TDY+LKIL
Sbjct: 256 LEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKIL 315
Query: 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NSTTFQIVNSL 349
GLD+CADTMVGD+++RGISGGQ+KRVTTGEMLVGP++ALFMDEIS +STT+ IVNSL
Sbjct: 316 GLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSL 375
Query: 350 RQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKR 409
RQ + IL+GT +ISLLQPAPETY+LFDDIIL+S+G+IVYQGPR+ VLEFF+ MGF+CP+R
Sbjct: 376 RQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQR 435
Query: 410 KGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRK 469
KGVADFLQEVTS+K+QQQYW++ EPYRF+T K F + ++SF++G+KL DEL PFDK K
Sbjct: 436 KGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTK 495
Query: 470 SHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
H AALT + YG+ +K+LL+ C RELL MKRNSFVY+FK SQ
Sbjct: 496 CHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQ 538
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May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/523 (68%), Positives = 431/523 (82%), Gaps = 27/523 (5%)
Query: 13 NSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGILTTSRG 72
S+R S+WR+N A FS S+R+E DDEEAL WAA LEKLPTY+RL+KGIL S+G
Sbjct: 24 GSIRENSNSIWRNNG--AEVFSRSARDE-DDEEALKWAA-LEKLPTYDRLRKGILFGSQG 79
Query: 73 EANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNV 132
A EVDV++ G ER+ L+E+LVKVA+ NE+FLLKLKNRI RVGI P+IEVRFEHLN+
Sbjct: 80 AAAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNI 139
Query: 133 EAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGP 192
+A+AYVGSRALPTF NF +N VEG L+S++ILPS+K+ +TILKDVSGI++P RMTLLLGP
Sbjct: 140 DADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGP 199
Query: 193 PGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRET 233
PGS KTTLLLALAGKLDS+LK ISQHD+HIGEMTVRET
Sbjct: 200 PGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRET 259
Query: 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293
L FSARCQGVGSRYEMLAEL+RREKAA IKPD DID+FMKAA+TEGQE V+TDYILKIL
Sbjct: 260 LEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKIL 319
Query: 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NSTTFQIVNSL 349
GLD+CADTMVGD+++RGISGGQ+KRVTTGEM+VGP++ALFMDEIS +STT+ IVNSL
Sbjct: 320 GLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSL 379
Query: 350 RQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKR 409
+Q + I++GT LISLLQPAPETY+LFDDIIL+S+G+IVY+GPRE VLEFF+ MGF+CP+R
Sbjct: 380 KQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPER 439
Query: 410 KGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRK 469
KG ADFLQEVTS+K+QQQYW R +EPYRF+T K F + ++SF++G+K+ DEL+ FDK K
Sbjct: 440 KGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSK 499
Query: 470 SHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
SH AALTT+ YG+ ++QLL+ C RELL M+RNSFVY+FK Q
Sbjct: 500 SHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQ 542
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Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/525 (67%), Positives = 418/525 (79%), Gaps = 28/525 (5%)
Query: 11 VSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGILTTS 70
+ SLR + S WRS S S F SSREE DDEEAL WAA LEKLPTY+RL+KGI+T
Sbjct: 15 LQGSLRRSV-SAWRSPSTS-DVFGRSSREE-DDEEALKWAA-LEKLPTYDRLRKGIMTGD 70
Query: 71 RGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHL 130
GE EVD+ LG QER+ L+EKLV+ AE NE FLLKL+NR+ RVGI PTIEVRFEHL
Sbjct: 71 GGEIQEVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHL 130
Query: 131 NVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLL 190
N+ AEA+VG+R +PT NF N L++L+++PS K+ ++IL DVSGII+P RMTLLL
Sbjct: 131 NINAEAFVGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLL 190
Query: 191 GPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231
GPPG+ KTTLLLALAGKLD++LK ISQHDVHIGEMTVR
Sbjct: 191 GPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVR 250
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
ETLAFS+RCQGVG+RYEML EL+RREK A IKPDPD+DV+MKA A EGQE SV+TDYILK
Sbjct: 251 ETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILK 309
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NSTTFQIVN 347
ILGLD+CADTMVGD ++RGISGGQ+KRVTTGEMLVGP++ALFMDEIS +STTFQIVN
Sbjct: 310 ILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVN 369
Query: 348 SLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECP 407
SLRQ +HIL GT LI+LLQPAPETYDLFDDI+L+S+G IVYQGPRE VLEFF+ MGF+CP
Sbjct: 370 SLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCP 429
Query: 408 KRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDK 467
+RKGVADFLQEVTS+K+QQQYW RE EPYRFV V F++ FKSF++G KL +EL PFD+
Sbjct: 430 ERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDR 489
Query: 468 RKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
++H AALTT YG+S+ +LL++C+ RE L MKRNSFVYIFK+ Q
Sbjct: 490 SRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQ 534
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May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
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Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/534 (63%), Positives = 417/534 (78%), Gaps = 29/534 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ ++ SNS+R +SVW+ +S FS SSREE DDEEAL WAA LEKLPT++RL+
Sbjct: 2 EGTSFHQASNSMRRN-SSVWKKDS-GREIFSRSSREE-DDEEALRWAA-LEKLPTFDRLR 57
Query: 64 KGILTTSR--GEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP 121
KGILT S G NE+D+ LG Q+ ++L+E+L+KV + +E+ L KLK RI RVGI LP
Sbjct: 58 KGILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLP 117
Query: 122 TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGII 181
TIEVRF+HL VEAE +VG RALPTF NF +N + FLN+L+++P+RKK TIL DVSGI+
Sbjct: 118 TIEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIV 177
Query: 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222
+PGRM LLLGPP S KTTLLLALAGKLD LK I Q+D
Sbjct: 178 KPGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQND 237
Query: 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEV 282
VHIGEMTVRET A++AR QGVGSRY+ML EL RREK A IKPDPDID+FMKA +T G++
Sbjct: 238 VHIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKT 297
Query: 283 SVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS---- 338
+V+TDYILKILGL+VCADTMVGD++LRGISGGQ+KRVTTGEMLVGP++ALFMDEIS
Sbjct: 298 NVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLD 357
Query: 339 NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398
+STT+QIVNSLR ++HI GT LISLLQPAPET++LFDDIILI+ G I+Y+GPR++V+EF
Sbjct: 358 SSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEF 417
Query: 399 FKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLE 458
F+ MGF+CP RKGVADFLQEVTS+K+Q QYWAR +EPYRF+ V+ F + F+SF++G+++
Sbjct: 418 FETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIG 477
Query: 459 DELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
DEL +PFDK KSH AALTTK YGV K+L+++ SRE L MKRNSFVY FK Q
Sbjct: 478 DELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQ 531
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May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/515 (65%), Positives = 413/515 (80%), Gaps = 28/515 (5%)
Query: 21 SVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGILTTSRGEANEVDVN 80
S WR S + AF S REE DDEEAL WAA+ EKLPTY+R++KGILT G EVD+
Sbjct: 21 SSWRGTSGRSDAFGRSVREE-DDEEALKWAAI-EKLPTYDRMRKGILTA--GGVEEVDIG 76
Query: 81 NLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGS 140
LG QER+ L+E+LV+ AE NE FLLKL++R+ RVGI PTIEVRFE+L+++AEAYVG+
Sbjct: 77 GLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYVGN 136
Query: 141 RALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200
R +PTF NF +N + L+++ I+ S K+ ++IL D+SGIIRPGRM+LLLGPPGS KT+L
Sbjct: 137 RGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTSL 196
Query: 201 LLALAGKLDSSLK-------NRCD------------ISQHDVHIGEMTVRETLAFSARCQ 241
LLALAGKLDS+LK N D I QHD+HIGEMTVRETLAFSARCQ
Sbjct: 197 LLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQ 256
Query: 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301
GVG+RY+ML EL+RREK A IKPDPDIDV+MKA + EGQE SV+TDYILKILGL++CADT
Sbjct: 257 GVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADT 315
Query: 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NSTTFQIVNSLRQFIHILE 357
MVGD ++RGISGGQ+KRVTTGEMLVGPA+ALFMDEIS +STT+QIVNSLRQ +HIL
Sbjct: 316 MVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILG 375
Query: 358 GTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417
GT LI+LLQPAPETYDLFDDI+L+S G IVYQGPRE +LEFF+ MGF+CP+RKGVADFLQ
Sbjct: 376 GTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQ 435
Query: 418 EVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTT 477
EVTS+K+Q QYW R +EPYR+++V F++ FK F++G+ L ELR+PFD+ ++H AALTT
Sbjct: 436 EVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTT 495
Query: 478 KIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
YG+S+ +L ++C SRE L MKRNSFVYIFK+ Q
Sbjct: 496 SRYGISKMELTKACFSREWLLMKRNSFVYIFKILQ 530
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May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/537 (63%), Positives = 415/537 (77%), Gaps = 38/537 (7%)
Query: 5 NNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSS---REEQDDEEALIWAAVLEKLPTYNR 61
+ EV+++++ R G S+WRS FS SS ++E DDEEAL WAA LE+LPTY+R
Sbjct: 2 DREVHRMASLRREG--SMWRSG---GDVFSRSSSRFQDEDDDEEALRWAA-LERLPTYDR 55
Query: 62 LKKGILTTSR------GEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIAR 115
+++GIL S GE EVDV LG +E + L+E+LV+ A+ +E FLLKL+ R+ R
Sbjct: 56 VRRGILAVSSEDGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDR 115
Query: 116 VGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILK 175
VGI PTIEVRFE+L VEA+ +VG+R LPT N N VE N+L+ILP++K+ +T+L
Sbjct: 116 VGIDYPTIEVRFENLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLH 175
Query: 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRC 216
DVSGII+P RMTLLLGPPGS KTTLLLALAGKLD LK
Sbjct: 176 DVSGIIKPRRMTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAA 235
Query: 217 DISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAA 276
ISQHD+HIGEMTVRETLAFSARCQGVG+RYEML EL RREKAA IKPD DID++MKA+A
Sbjct: 236 YISQHDLHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASA 295
Query: 277 TEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
GQE SV+TDYILKILGLD+CADT+VG+E+LRGISGGQRKRVTTGEMLVGPA+ALFMDE
Sbjct: 296 MGGQESSVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDE 355
Query: 337 IS----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392
IS +STT+QIVNSLRQ IHIL GT +ISLLQPAPETY+LFDDIIL+S+G +VYQGPR
Sbjct: 356 ISTGLDSSTTYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPR 415
Query: 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFY 452
E+VLEFF+FMGF CP RKGVADFLQEVTS+K+Q QYW R + PYRFV VK F D F+SF+
Sbjct: 416 EHVLEFFEFMGFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFH 475
Query: 453 LGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFK 509
+G+ +++EL PFD+ +SH AAL T YGVS K+LL++ + RELL MKRN+F+YIFK
Sbjct: 476 VGRSIQNELSEPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFK 532
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/549 (62%), Positives = 409/549 (74%), Gaps = 45/549 (8%)
Query: 7 EVYKVSNSLRAG---ITSVWRSNSVSAGAFSMSS-------REEQDDEEALIWAAVLEKL 56
E+ K ++ R G + S+W S GAFS SS R E+DDEEAL WAA L+KL
Sbjct: 8 EMQKAASFRREGGGSMASMWLSAD-GNGAFSRSSSSSSRRMRGEEDDEEALRWAA-LQKL 65
Query: 57 PTYNRLKKGILTTSRGEANE-----------VDVNNLGQQERQRLVEKLVKVAEVYNEEF 105
PTY+R++ IL GE E VDV++LG ER+ L+E+LV+VA+ NE F
Sbjct: 66 PTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRALLERLVRVADDDNERF 125
Query: 106 LLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILP 165
LLKLK RI+RVGI +PTIEVRFEHL VEAE VG+ +PT N N +E N+L ILP
Sbjct: 126 LLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNSITNKIEEAANALGILP 185
Query: 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--------------- 210
+RK+ L IL D+SGII+P RMTLLLGPPGS KTT LLALAG+L
Sbjct: 186 TRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLKDLKFSGQVTYNGHQME 245
Query: 211 ---SLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPD 267
+ ISQHD+HIGEMTVRETL+FSARCQGVGSR++ML ELTRREKAA IKPD D
Sbjct: 246 DFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDAD 305
Query: 268 IDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVG 327
+D FMKA+A EGQE ++ITDYILKILGL++CADTMVGD+++RGISGGQRKRVTTGEMLVG
Sbjct: 306 VDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVG 365
Query: 328 PAQALFMDEIS----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383
PA A FMDEIS +STTFQIV SLRQ IHIL GT +ISLLQPAPETYDLFDDIIL+S+
Sbjct: 366 PANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSD 425
Query: 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKG 443
GHIVYQGPRE VLEFF+ MGF+CP+RKGVADFLQEVTS+K+Q+QYWA+ ++PYR+V +K
Sbjct: 426 GHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKE 485
Query: 444 FTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNS 503
F F+SF+ G+ + +EL PFDK KSH AALTT YGVS +LL++ + RELL +KRNS
Sbjct: 486 FASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNS 545
Query: 504 FVYIFKLSQ 512
FVYIF+ Q
Sbjct: 546 FVYIFRTIQ 554
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 330/526 (62%), Positives = 397/526 (75%), Gaps = 34/526 (6%)
Query: 20 TSVWRS--NSVSAGAFSMSSREE-QDDEEALIWAAVLEKLPTYNRLKKGILTTSRGEANE 76
S+W S N V + + + SS E+ +DDEEAL WAA LEKLPTY+R+++ +L
Sbjct: 26 ASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAA-LEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 77 -------VDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEH 129
VDV +LG QER+ L+E+LV+VAE NE FLLKLK RI RVGI +PTIEVRFEH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 130 LNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLL 189
L EAE VG+ LPT N N +EG N+L ILP++K+ + IL DVSGI++P RMTLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 190 LGPPGSVKTTLL----------LALAGKLDSSLKNRCD---------ISQHDVHIGEMTV 230
LGPPGS KTTLL + +G++ + D ISQHD+HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
RETL+FSARCQGVGSR++ML EL+RREKAA IKPD DID FMKA+A EGQE ++ITDYIL
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NSTTFQIV 346
KILGLD+CADTMVGD+++RGISGGQRKRVTTGEMLVGPA ALFMDEIS +STTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 347 NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFEC 406
SLRQ IHIL GT +ISLLQPAPETYDLFDDIIL+S+G IVYQGPRE VLEFF+ MGF+C
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 407 PKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFD 466
P+RKGVADFLQEVTS+K+Q+QYW + ++PYR+V VK F F+SF+ GK + +EL PFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 467 KRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
K K+H AALTT YGVS +LL++ + RE L MKRNSFVYIF+ Q
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQ 550
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 336/533 (63%), Positives = 402/533 (75%), Gaps = 35/533 (6%)
Query: 10 KVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGIL-- 67
++ S+R S+WR FS SSREE DDEEAL WAA LEKLPTY+R+++ IL
Sbjct: 14 RLGGSMRGDSGSMWRRGD---DVFSRSSREE-DDEEALRWAA-LEKLPTYDRVRRAILPL 68
Query: 68 -----TTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT 122
G VDV+ LG +ER+ L+E+LV+VA+ NE+FLLKLK+R+ RVGI +PT
Sbjct: 69 GGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPT 128
Query: 123 IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIR 182
IEVRFEHL EAE VG+ LPT N N +E N+L ILP+RK+ + +L DVSGII+
Sbjct: 129 IEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIK 188
Query: 183 PGRMTLLLGPPGSVKTTLL----------LALAGKLDSSL---------KNRCDISQHDV 223
P RMTLLLGPPGS KTTLL L +GK+ + + ISQHD+
Sbjct: 189 PRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDL 248
Query: 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
HIGEMTVRETLAFSARCQGVGSR++ML EL+RREKAA IKPD DID FMKAAA GQE +
Sbjct: 249 HIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEAN 308
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----N 339
V TDYILKILGL++CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA+ALFMDEIS +
Sbjct: 309 VNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDS 368
Query: 340 STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399
STTFQIVNSLRQ +HIL GT +ISLLQPAPETY+LFDDIIL+S+G IVYQGPRE VLEFF
Sbjct: 369 STTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFF 428
Query: 400 KFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLED 459
+ MGF+CP RKGVADFLQEVTS+K+Q+QYWAR ++PYRFVTVK F F+SF+ G+ + +
Sbjct: 429 ESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIAN 488
Query: 460 ELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
EL +PFDK KSH AAL T YG K+LL++ + RE+L MKRNSFVY+F+ Q
Sbjct: 489 ELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQ 541
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1623), Expect = e-179, Method: Compositional matrix adjust.
Identities = 335/533 (62%), Positives = 401/533 (75%), Gaps = 35/533 (6%)
Query: 10 KVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGIL-- 67
++ S+R S+WR FS SSREE DDEEAL WAA LEKLPTY+R+++ IL
Sbjct: 14 RLGGSMRGDSGSMWRRGD---DVFSRSSREE-DDEEALRWAA-LEKLPTYDRVRRAILPL 68
Query: 68 -----TTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT 122
G VDV+ LG +ER+ L+E+LV+VA+ NE+FLLKLK+R+ RVGI +PT
Sbjct: 69 GGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPT 128
Query: 123 IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIR 182
IEVRFEHL EAE VG+ LPT N N +E N+L ILP+RK+ + +L DVSGII+
Sbjct: 129 IEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIK 188
Query: 183 PGRMTLLLGPPGSVKTTLL----------LALAGKLDSSL---------KNRCDISQHDV 223
P RMTLLLGPPGS KTTLL L +GK+ + + ISQHD+
Sbjct: 189 PRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDL 248
Query: 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
HIGEMTVRETLAFSARCQGVGSR++ML EL+RREKAA IKPD DID FMKAAA GQE +
Sbjct: 249 HIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEAN 308
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----N 339
V TDYILKILGL++CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA+ALFMDEIS +
Sbjct: 309 VNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDS 368
Query: 340 STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399
STTFQIVNSLRQ +HIL GT +ISLLQPAPETY+LFDDIIL+S+G IVYQGPRE VLEFF
Sbjct: 369 STTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFF 428
Query: 400 KFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLED 459
+ GF+CP RKGVADFLQEVTS+K+Q+QYWAR ++PYRFVTVK F F+SF+ G+ + +
Sbjct: 429 ESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIAN 488
Query: 460 ELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
EL +PFDK KSH AAL T YG K+LL++ + RE+L MKRNSFVY+F+ Q
Sbjct: 489 ELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQ 541
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.969 | 0.353 | 0.697 | 0.0 | |
| 356550580 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.353 | 0.703 | 0.0 | |
| 356555801 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.353 | 0.703 | 0.0 | |
| 356555803 | 1417 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.355 | 0.703 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.971 | 0.354 | 0.701 | 0.0 | |
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.975 | 0.356 | 0.704 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.971 | 0.354 | 0.694 | 0.0 | |
| 357455075 | 1427 | Pleiotropic drug resistance protein [Med | 0.969 | 0.353 | 0.682 | 0.0 | |
| 255575322 | 1423 | ATP-binding cassette transporter, putati | 0.969 | 0.354 | 0.680 | 0.0 | |
| 357455071 | 1492 | Pleiotropic drug resistance protein [Med | 0.969 | 0.338 | 0.676 | 0.0 |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/532 (69%), Positives = 442/532 (83%), Gaps = 27/532 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ +++Y+ SNSLR+ ++VWR++ V A FS SSREE DDEEAL WAA LEKLPTYNRL+
Sbjct: 2 EGSDIYRASNSLRSRSSTVWRNSGVEA--FSRSSREE-DDEEALKWAA-LEKLPTYNRLR 57
Query: 64 KGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTI 123
KG+LT S G ANE+DV++LG QERQ+L+E+LVKVAE NE FLLKLK RI RVG+ +PTI
Sbjct: 58 KGLLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTI 117
Query: 124 EVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRP 183
EVR+EHLN+EAEA+VGSRALP+F N N+VEGF N L++ S+KKH+TILKDVSGII+P
Sbjct: 118 EVRYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKP 177
Query: 184 GRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224
RMTLLLGPP S KTTLLLAL+GKLD +LK ISQHD+H
Sbjct: 178 RRMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLH 237
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
IGEMTVRETLAFSARCQGVGSRY+ML+EL+RREKAA IKPDPD+DV+MKA ATEGQE ++
Sbjct: 238 IGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNI 297
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NS 340
+TDY LKILGLD+CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +S
Sbjct: 298 VTDYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 357
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
TTFQIV+SLR ++HIL GT +ISLLQPAPETYDLFDDIILIS+G +VY GPREYVL+FF+
Sbjct: 358 TTFQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFE 417
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
MGF CP+RKGVADFLQEVTS+K+Q QYW R ++PYRFVTV F + F+SF++G KL +E
Sbjct: 418 SMGFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEE 477
Query: 461 LRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
L +PFD+ KSH AALTTK YG+++K+LL++ SRE L MKRNSFVY+FKLSQ
Sbjct: 478 LTVPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQ 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550580|ref|XP_003543663.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/532 (70%), Positives = 440/532 (82%), Gaps = 28/532 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ +++Y+ SNSLR T+ WR++ V FS SSREE DDEEAL WAA LEKLPTYNRL+
Sbjct: 2 EGSDIYRASNSLRRSSTA-WRNSGVEV--FSRSSREE-DDEEALKWAA-LEKLPTYNRLR 56
Query: 64 KGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTI 123
KG+LT S G ANE+DV++LG QER +L+E+LVKVAE NE FLLKLK RI RVG+ +PTI
Sbjct: 57 KGLLTASHGVANEIDVSDLGTQERHKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTI 116
Query: 124 EVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRP 183
EVR+EHLN+EAEA+VGSRALP+F N NI+EGF N L+I S+KKH+TILKDVSGII+P
Sbjct: 117 EVRYEHLNIEAEAFVGSRALPSFINSVTNIIEGFFNLLHITTSKKKHVTILKDVSGIIKP 176
Query: 184 GRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224
RMTLLLGPP S KTTLLLAL+GKLD +LK ISQHD+H
Sbjct: 177 RRMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLH 236
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
IGEMTVRETLAFSARCQGVGSRY+ML+EL+RREKAA IKPDPD+DV+MKA ATEGQE S+
Sbjct: 237 IGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSI 296
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NS 340
+TDY LKILGLD+CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +S
Sbjct: 297 VTDYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 356
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
TTFQIVNSLRQ++HIL GT +ISLLQPAPETYDLFDDIILIS+G +VY GPREYVL+FF+
Sbjct: 357 TTFQIVNSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFE 416
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
MGF CP+RKGVADFLQEVTS+K+Q QYWAR ++PYRFV V F + F+SF++G+KL +E
Sbjct: 417 SMGFRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVKVTQFAEAFQSFHIGRKLGEE 476
Query: 461 LRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
L +PFDK KSH AALTTK YG+++K+LL++ +SRE L MKRNSFVYIFKL Q
Sbjct: 477 LVVPFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQ 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555801|ref|XP_003546218.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/532 (70%), Positives = 442/532 (83%), Gaps = 28/532 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ +++Y+ SNSLR ++VWR++ V FS SSREE DDEEAL WAA LEKLPTYNRL+
Sbjct: 2 EGSDIYRASNSLRRS-STVWRNSGVEV--FSRSSREE-DDEEALKWAA-LEKLPTYNRLR 56
Query: 64 KGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTI 123
KG+LT S G ANE+DV++LG QERQ+L+E+LVKVAE NE FLLKLK RI RVG+ +PTI
Sbjct: 57 KGLLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTI 116
Query: 124 EVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRP 183
EVR+EHLN+EAEA+VGSRALP+F N N+VEGF N L+I S+KKH+TILKDVSGII+P
Sbjct: 117 EVRYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKP 176
Query: 184 GRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224
RMTLLLGPP S KTTLLLAL+GKLD +LK ISQHD+H
Sbjct: 177 RRMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLH 236
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
IGEMTVRETLAFSARCQGVGSRY+ML+EL+RREKAA IKPDPD+DV+MKA ATEGQE S+
Sbjct: 237 IGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSL 296
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NS 340
+TDY LKILGLD+CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +S
Sbjct: 297 VTDYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 356
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
TTFQIV+ LRQ++HIL GT +ISLLQPAPETYDLFDDIILIS+G +VY GPREYVL+FF+
Sbjct: 357 TTFQIVSFLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFE 416
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
MGF CP+RKGVADFLQEVTS+K+Q QYWAR ++PYRFVTV F++ F+SF++G KL +E
Sbjct: 417 SMGFRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEE 476
Query: 461 LRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
L +PFDK KSH AALTTK YG+++K+LL++ +SRE L MKRNSFVYIFKL Q
Sbjct: 477 LAVPFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQ 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555803|ref|XP_003546219.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/532 (70%), Positives = 442/532 (83%), Gaps = 28/532 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ +++Y+ SNSLR ++VWR++ V FS SSREE DDEEAL WAA LEKLPTYNRL+
Sbjct: 2 EGSDIYRASNSLRRS-STVWRNSGVEV--FSRSSREE-DDEEALKWAA-LEKLPTYNRLR 56
Query: 64 KGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTI 123
KG+LT S G ANE+DV++LG QERQ+L+E+LVKVAE NE FLLKLK RI RVG+ +PTI
Sbjct: 57 KGLLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTI 116
Query: 124 EVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRP 183
EVR+EHLN+EAEA+VGSRALP+F N N+VEGF N L+I S+KKH+TILKDVSGII+P
Sbjct: 117 EVRYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKP 176
Query: 184 GRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224
RMTLLLGPP S KTTLLLAL+GKLD +LK ISQHD+H
Sbjct: 177 RRMTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLH 236
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
IGEMTVRETLAFSARCQGVGSRY+ML+EL+RREKAA IKPDPD+DV+MKA ATEGQE S+
Sbjct: 237 IGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSL 296
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NS 340
+TDY LKILGLD+CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +S
Sbjct: 297 VTDYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 356
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
TTFQIV+ LRQ++HIL GT +ISLLQPAPETYDLFDDIILIS+G +VY GPREYVL+FF+
Sbjct: 357 TTFQIVSFLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFE 416
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
MGF CP+RKGVADFLQEVTS+K+Q QYWAR ++PYRFVTV F++ F+SF++G KL +E
Sbjct: 417 SMGFRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEE 476
Query: 461 LRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
L +PFDK KSH AALTTK YG+++K+LL++ +SRE L MKRNSFVYIFKL Q
Sbjct: 477 LAVPFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQ 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/533 (70%), Positives = 439/533 (82%), Gaps = 27/533 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSR-EEQDDEEALIWAAVLEKLPTYNRL 62
+ E+Y SLR G +S+WRSN++ FS SSR +E DDEEAL WAA+ E+LPTY+RL
Sbjct: 2 EGTELYIAGGSLRRGESSIWRSNAMEG--FSKSSRGDEDDDEEALKWAAI-ERLPTYDRL 58
Query: 63 KKGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT 122
KKG+LTTS+GEANE+DV NLG E++ L+++LVKVAE NE FLLKLKNRI RVGI LP
Sbjct: 59 KKGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPM 118
Query: 123 IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIR 182
IEVRFEHLNVE EA+VGSRALPTFFNF +IVEGFLN L+ILPS KK L+IL+DVSGII+
Sbjct: 119 IEVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIK 178
Query: 183 PGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223
P RMTLLLGPP S KTTLLLALAGKLD LK ISQHD
Sbjct: 179 PKRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDT 238
Query: 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
HIGEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPDIDVFMKA ATEGQE +
Sbjct: 239 HIGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEAN 298
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----N 339
V+TDYILKILGL+VCAD MVG+E+LRG+SGGQRKRVTTGEMLVGPA+ALFMDEIS +
Sbjct: 299 VVTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDS 358
Query: 340 STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399
STT+QIVNS++Q+IHIL GT +ISLLQP PETY+LFDDIIL+S+G IVYQGPRE VLEFF
Sbjct: 359 STTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFF 418
Query: 400 KFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLED 459
++MGF+CP+RKGVADFLQEVTS+K+Q QYWA +++PY FVTV+ F + F+SF +G++LE
Sbjct: 419 EYMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEA 478
Query: 460 ELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
EL PFDK KSH AALTTK YGV + +LL++C SRE+L MKRNSFVYIFKL+Q
Sbjct: 479 ELSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQ 531
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/534 (70%), Positives = 439/534 (82%), Gaps = 26/534 (4%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAG--AFSMSSREEQDDEEALIWAAVLEKLPTYNR 61
++ +Y+ +S+R G +S SN+ +A FS+SS + DDEEAL WAA LEKLPTY+R
Sbjct: 2 ESGYLYRAGSSVRRGNSSGTFSNNAAADHQVFSLSSHGQDDDEEALKWAA-LEKLPTYDR 60
Query: 62 LKKGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP 121
L+KGILTTS G A+EV+V NLG QER+ LVE+LV VAE NE+FLLKLKNRI RVGI +P
Sbjct: 61 LRKGILTTSTGAASEVEVQNLGFQERKNLVERLVNVAEEDNEKFLLKLKNRIDRVGIHVP 120
Query: 122 TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGII 181
TIEVRFEHLNVEAEAYVGSRALPTFFN+ N++EG LN L+IL SRKKH+ ILKDVSGII
Sbjct: 121 TIEVRFEHLNVEAEAYVGSRALPTFFNYSVNMLEGVLNYLHILSSRKKHMWILKDVSGII 180
Query: 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222
+P RMTLLLGPP S KTTLLLALAGKLD +LK ISQHD
Sbjct: 181 KPSRMTLLLGPPSSGKTTLLLALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQHD 240
Query: 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEV 282
+HIGEMTVRETLAFSARCQGVGSRY+MLAEL+RREK AGIKPDPDIDVFMKAAATEGQE
Sbjct: 241 LHIGEMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQED 300
Query: 283 SVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS---- 338
SV+ DYILK+LGL+VCADT+VGDE+LRGISGGQ+KRVTTGEMLVGPA+ALFMDEIS
Sbjct: 301 SVVIDYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLD 360
Query: 339 NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398
+STT+QIVNS++Q++ ILEGT LISLLQPAPETYDLFDDIIL+S+G IVYQGPRE+VL F
Sbjct: 361 SSTTYQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDIILLSDGEIVYQGPREHVLRF 420
Query: 399 FKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLE 458
F++MGF+CP RKGVADFLQEVTS+K+Q QYWAR + PYRFVTVK F + F SF+ GK+L
Sbjct: 421 FEYMGFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRLG 480
Query: 459 DELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
+EL +PFDK K+H AALTTK YGV++++L ++ SRE L MKRNSFVY FK Q
Sbjct: 481 NELAVPFDKSKNHPAALTTKKYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQ 534
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/533 (69%), Positives = 438/533 (82%), Gaps = 27/533 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQD-DEEALIWAAVLEKLPTYNRL 62
+ +++Y+ NSLRA ++VWR NS+ AFS SSR E+D DEEAL WAA LEKLPTYNRL
Sbjct: 2 EGSDIYRARNSLRANSSTVWR-NSIME-AFSRSSRHEEDNDEEALKWAA-LEKLPTYNRL 58
Query: 63 KKGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT 122
+KG+LTTSRG ANE+D+ LG QERQ+L+++L+ VAE NE LLKLK RI RVGI +PT
Sbjct: 59 RKGLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPT 118
Query: 123 IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIR 182
IEVR+EHLNVEAEAYVGSRALPTF NF N+VE F SL+IL +KKH+TIL+DVSGII+
Sbjct: 119 IEVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIK 178
Query: 183 PGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223
P RM LLLGPP S KTTLLLAL+GKLD +LK ISQHDV
Sbjct: 179 PRRMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDV 238
Query: 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
HIGEMTVRETLAFSARCQGVG+RY++L+EL RREK A IKPDPDIDV+MKAAAT GQE S
Sbjct: 239 HIGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEAS 298
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----N 339
++TDY+LKILGLD+CADTM+GDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +
Sbjct: 299 LVTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDS 358
Query: 340 STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399
STTFQIV SLRQ++HIL GT +ISLLQPAPETY+LFDDI+LIS+G IVYQGPREYVLEFF
Sbjct: 359 STTFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFF 418
Query: 400 KFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLED 459
+++GF+CP+RKGVADFLQEVTS+K+Q+QYW +E YRFVTV F + F+SF++G+++ +
Sbjct: 419 EYVGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGE 478
Query: 460 ELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
EL PFDK KSH AALTTK YGV++K+LL++ SRE L MKRNSFVYIFKL Q
Sbjct: 479 ELATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQ 531
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455075|ref|XP_003597818.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486866|gb|AES68069.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/532 (68%), Positives = 440/532 (82%), Gaps = 27/532 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ ++Y+ +NSLRA ++VWR + V FS SSREE DDEEAL WAA LEKLPTYNRL+
Sbjct: 2 EGTDIYRATNSLRARSSTVWRQSGVEV--FSKSSREE-DDEEALKWAA-LEKLPTYNRLR 57
Query: 64 KGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTI 123
KG+LT S G A+EVDV +L QE+Q+L+E+LVKVAE NE FLLK+K R+ RVG+ +PTI
Sbjct: 58 KGLLTASHGGAHEVDVGDLAFQEKQKLLERLVKVAEEDNERFLLKVKERVDRVGLDIPTI 117
Query: 124 EVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRP 183
EVR+++L ++AEA+VGSRALP+F N N+VEG LN L+I+P++K+H++ILKDVSGI++P
Sbjct: 118 EVRYQNLKIDAEAFVGSRALPSFINAATNVVEGVLNFLHIIPTKKRHVSILKDVSGIVKP 177
Query: 184 GRMTLLLGPPGSVKTTLLLALAGKLDSSL-------------------KNRCDISQHDVH 224
RMTLLLGPPGS KTTLLLAL+GKLD SL + ISQHDVH
Sbjct: 178 RRMTLLLGPPGSGKTTLLLALSGKLDPSLQLTGSVTYNGHGLNEFVPQRTAAYISQHDVH 237
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
IGEMTVRETLAFSARCQGVGSRY+ML+EL+RREKAA IKPDPDIDV+MKA ATEGQE S+
Sbjct: 238 IGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDIDVYMKAIATEGQEYSI 297
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NS 340
TDY+LKILGLD+CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +S
Sbjct: 298 STDYVLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 357
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
TTFQIV+SLRQ++HI+ GT +ISLLQPAPETYDLFDDIILIS+G +VY GPREYVL+FF+
Sbjct: 358 TTFQIVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFE 417
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
MGF+CP+RKG ADFLQEVTS+K+Q QYW R ++PYRFVTV F + F+SF++G+KL +E
Sbjct: 418 TMGFKCPERKGAADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGRKLAEE 477
Query: 461 LRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
L +PFDK KSH AALTTK YG+++ +LL++ SRE L MKRNSFVYIFKL+Q
Sbjct: 478 LSVPFDKTKSHPAALTTKEYGLNKTELLKANFSREYLLMKRNSFVYIFKLTQ 529
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575322|ref|XP_002528564.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223532008|gb|EEF33819.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/535 (68%), Positives = 439/535 (82%), Gaps = 30/535 (5%)
Query: 1 MESDNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYN 60
MESD +Y+ +S+R G + +W S +A FS S ++ DEEALIWAA L KLPTY+
Sbjct: 1 MESD---LYRAGSSVRRGDSLMW---SNAAEIFSNSHGSQETDEEALIWAA-LSKLPTYD 53
Query: 61 RLKKGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL 120
RL+KGILT+S G E+ V+NLG QER+ LV++LV VAE NE+FLLKL+NR+ RVGI +
Sbjct: 54 RLRKGILTSSIGGVREIKVHNLGLQERKSLVDRLVAVAEEDNEKFLLKLRNRVDRVGIQI 113
Query: 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGI 180
PTIEVRFEHLN+EAEAYVG RALPTFFN+ AN+VE L SL+++ S+KKHL IL +VSGI
Sbjct: 114 PTIEVRFEHLNIEAEAYVGGRALPTFFNYTANMVERILTSLHVISSKKKHLYILNNVSGI 173
Query: 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221
I+P RMTLLLGPP S KTTLLLALAGKLD +LK + ISQ+
Sbjct: 174 IKPSRMTLLLGPPSSGKTTLLLALAGKLDPTLKVSGRVTYNGHGMNEFVPQRSAAYISQY 233
Query: 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQE 281
D+HIGEMTVRETLAFSARC+GVG+RY+MLAEL+RREKA IKPDPDIDVFMKAAA EG+E
Sbjct: 234 DLHIGEMTVRETLAFSARCEGVGTRYDMLAELSRREKAMNIKPDPDIDVFMKAAAIEGEE 293
Query: 282 VSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS--- 338
SV+TDYILK+LGL+VCADTMVGD++LRGISGGQRKRVTTGEMLVGPA+ALFMDEIS
Sbjct: 294 TSVVTDYILKVLGLEVCADTMVGDDMLRGISGGQRKRVTTGEMLVGPAKALFMDEISTGL 353
Query: 339 -NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+STT+Q+VNSL+Q++HIL+GT LISLLQPAPETYDLFDDIIL+S+GHIVYQGP E VLE
Sbjct: 354 DSSTTYQVVNSLKQYVHILKGTALISLLQPAPETYDLFDDIILLSDGHIVYQGPCEQVLE 413
Query: 398 FFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKL 457
FFK MGF+CP+RKGVADFLQEVTS+K+QQQYWAR + PY+F T K F++ F+SF++G++L
Sbjct: 414 FFKHMGFKCPERKGVADFLQEVTSRKDQQQYWARRDVPYKFFTAKEFSEAFQSFHVGREL 473
Query: 458 EDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
D+L +P+DK SHRAALTTK YG+S+K+L ++C SRE L MKRNSF YIFK SQ
Sbjct: 474 GDQLAVPYDKANSHRAALTTKKYGISKKELYKACFSREFLLMKRNSFFYIFKFSQ 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455071|ref|XP_003597816.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486864|gb|AES68067.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/532 (67%), Positives = 437/532 (82%), Gaps = 27/532 (5%)
Query: 4 DNNEVYKVSNSLRAGITSVWRSNSVSAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLK 63
+ ++Y+ +NSLRA ++VWR + V FS SSREE DDEEAL WAA LEKLPTYNRL+
Sbjct: 64 EGTDIYRATNSLRARSSTVWRQSGVEV--FSKSSREE-DDEEALKWAA-LEKLPTYNRLR 119
Query: 64 KGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTI 123
KG+LT S G A+EVDV +L +E+Q+L+E+LV+VAE NE FLLK+K R+ RVG+ +PTI
Sbjct: 120 KGLLTASHGGAHEVDVGDLAFKEKQKLLERLVRVAEEDNEGFLLKVKERVDRVGLDIPTI 179
Query: 124 EVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRP 183
EVR+++L ++AEA+VGSRALP+F N N+VEG N L+I+P++K+H+ IL+DVSGII+P
Sbjct: 180 EVRYQNLKIDAEAFVGSRALPSFINAATNVVEGVFNFLHIIPTKKRHVAILRDVSGIIKP 239
Query: 184 GRMTLLLGPPGSVKTTLLLALAGKLDSSL-------------------KNRCDISQHDVH 224
RMTLLLGPPGS KTTLLLAL+GKLDSS + ISQHDVH
Sbjct: 240 RRMTLLLGPPGSGKTTLLLALSGKLDSSFQLSGNVTYNGHGLNEFVPQRTAAYISQHDVH 299
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
IGEMTVRETLAFSARCQGVGSRY+ML+EL+RREK A IKPDPDIDV+MKA ATEGQE S+
Sbjct: 300 IGEMTVRETLAFSARCQGVGSRYDMLSELSRREKVANIKPDPDIDVYMKAIATEGQESSI 359
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NS 340
TDY+LKILGLD+CADTMVGDE+LRGISGGQRKRVTTGEMLVGPA ALFMDEIS +S
Sbjct: 360 STDYVLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 419
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
TTFQIV+SLRQ++HI+ GT +ISLLQPAPETYDLFDDIILIS+G +VY GPREYVL+FF+
Sbjct: 420 TTFQIVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFE 479
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
MGF+CP+RKGVADFLQEVTS+K+Q QYW R ++PYR+VTV F + F+SF++G KL +E
Sbjct: 480 SMGFKCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRYVTVTQFAEAFQSFHIGGKLAEE 539
Query: 461 LRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
L IPFDK KSH AALTTK YG+++ +LL++ SRE L MKRNSFVYIFKL+Q
Sbjct: 540 LSIPFDKTKSHPAALTTKEYGLNKTELLKANFSREYLLMKRNSFVYIFKLTQ 591
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.566 | 0.207 | 0.702 | 2.3e-170 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.566 | 0.203 | 0.655 | 2.5e-149 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.566 | 0.202 | 0.645 | 2.1e-145 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.566 | 0.200 | 0.615 | 3.7e-145 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.566 | 0.204 | 0.628 | 1.5e-144 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.687 | 0.252 | 0.514 | 4e-133 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.566 | 0.208 | 0.575 | 7.8e-124 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.566 | 0.206 | 0.55 | 2.1e-118 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.815 | 0.300 | 0.479 | 6e-97 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.566 | 0.203 | 0.598 | 2.6e-93 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1117 (398.3 bits), Expect = 2.3e-170, Sum P(2) = 2.3e-170
Identities = 210/299 (70%), Positives = 257/299 (85%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
I Q+DVHIGEMTVRET A++AR QGVGSRY+ML EL RREK A IKPDPDID+FMKA +T
Sbjct: 233 IGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMST 292
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
G++ +V+TDYILKILGL+VCADTMVGD++LRGISGGQ+KRVTTGEMLVGP++ALFMDEI
Sbjct: 293 AGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEI 352
Query: 338 S----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
S +STT+QIVNSLR ++HI GT LISLLQPAPET++LFDDIILI+ G I+Y+GPR+
Sbjct: 353 STGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRD 412
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
+V+EFF+ MGF+CP RKGVADFLQEVTS+K+Q QYWAR +EPYRF+ V+ F + F+SF++
Sbjct: 413 HVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHV 472
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G+++ DEL +PFDK KSH AALTTK YGV K+L+++ SRE L MKRNSFVY FK Q
Sbjct: 473 GRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQ 531
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 2.5e-149, Sum P(2) = 2.5e-149
Identities = 196/299 (65%), Positives = 245/299 (81%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
ISQHD+H GEMTVRE+L FS RC GVG+RY++L EL+RRE+ AGIKPDP+ID FMK+ A
Sbjct: 252 ISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAI 311
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
GQE S++TDY+LK+LGLD+CADT+VGD + RGISGGQRKR+TTGEMLVGPA ALFMDEI
Sbjct: 312 SGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEI 371
Query: 338 S----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
S +STTFQI +RQ +HI + T++ISLLQPAPET++LFDDIIL+S G IVYQG R+
Sbjct: 372 STGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRD 431
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
VLEFF++MGF+CP+RKG+ADFLQEVTS+K+Q+QYW R E PY +V+V F+ F SF+
Sbjct: 432 NVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHA 491
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G++L E R+P+DK K+H AAL T+ YG+S K L ++C RE L MKRNSFVY+FK Q
Sbjct: 492 GQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQ 550
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 2.1e-145, Sum P(2) = 2.1e-145
Identities = 193/299 (64%), Positives = 243/299 (81%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
ISQHD+H GEMTVRE L FS RC GVGSRY++++EL+RREK GIKPDP ID FMK+ A
Sbjct: 254 ISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAI 313
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
GQE S++TDY+LKILGLD+CAD + GD + RGISGGQ+KR+TTGEMLVGPA+ALFMDEI
Sbjct: 314 SGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEI 373
Query: 338 S----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
S +STTFQI +RQ +HI + T++ISLLQPAPET++LFDDIIL+S G IVYQGPR+
Sbjct: 374 STGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRD 433
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
VLEFF++ GF+CP+RKGVADFLQEVTS+K+Q+QYW + E+PY +V+V F+ F +F+
Sbjct: 434 NVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHT 493
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G+KL E R+P+DK K+H AAL T+ YG+S +L ++C RE L MKRNSFVY+FK Q
Sbjct: 494 GQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQ 552
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 3.7e-145, Sum P(2) = 3.7e-145
Identities = 184/299 (61%), Positives = 241/299 (80%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
ISQ+D+H+G MTV+ETL FSARCQGVG+RY++L EL RREK AGI P+ D+D+FMKA+A
Sbjct: 250 ISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAA 309
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
+G + S++TDY LKILGLD+C DT+VGD+++RGISGGQ+KRVTTGEM+VGP + LFMDEI
Sbjct: 310 QGVKNSLVTDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEI 369
Query: 338 S----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
S +STTFQIV L+Q +H+ E T+L+SLLQPAPET+DLFDDIIL+S G IVYQGPR+
Sbjct: 370 STGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRD 429
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
+LEFF+ GF+CP+RKG ADFLQEVTS+K+Q+QYW PY ++ V F +KSF++
Sbjct: 430 NILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHV 489
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G K+ +EL +PFDK + H+AAL Y VS+++LL+SC +E L M+RN+F Y+FK Q
Sbjct: 490 GTKMSNELAVPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQ 548
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 1.5e-144, Sum P(2) = 1.5e-144
Identities = 188/299 (62%), Positives = 242/299 (80%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
ISQ+D+H+G MTV+ETL FSARCQGVG+RY++L EL RREK AGI P+ D+D+FMKA+A
Sbjct: 248 ISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAA 307
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
+G + S+ITDY LKILGLD+C DT+VGD+++RGISGGQ+KRVTTGEM+VGP + LFMDEI
Sbjct: 308 QGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEI 367
Query: 338 S----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
S +STTFQIV L+Q +H+ E T+LISLLQPAPET+DLFDDIIL+S G IVYQGPR+
Sbjct: 368 STGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRD 427
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
++LEFF+ GF+CP+RKG ADFLQEVTS+K+Q+QYW PYR++ V F +FK F++
Sbjct: 428 HILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHV 487
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G KL +EL +P+DK KSH+AAL Y + + +LL+SC +E + MKRNSF Y+FK Q
Sbjct: 488 GSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQ 546
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 4.0e-133, Sum P(2) = 4.0e-133
Identities = 194/377 (51%), Positives = 253/377 (67%)
Query: 152 NIVEGFLNSLNILPS-----RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXX 206
+++ G N L IL R LT+L G G+ TLLL G + T
Sbjct: 139 HVIGGKRNKLTILDGISGVIRPSRLTLLL---GPPSSGKTTLLLALAGRLGTNLQTSGKI 195
Query: 207 XXXXXXXNR-------CDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKA 259
+SQ D H+ EMTVR+TL F+ RCQGVG +Y+ML EL RREK
Sbjct: 196 TYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLLELARREKL 255
Query: 260 AGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV 319
AGI PD D+D+FMK+ A G E S++ +Y++KILGLD CADT+VGDE+++GISGGQ+KR+
Sbjct: 256 AGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGISGGQKKRL 315
Query: 320 TTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF 375
TTGE+LVGPA+ LFMDEISN STT QI+ +R H LEGT +ISLLQP+PETY+LF
Sbjct: 316 TTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSPETYELF 375
Query: 376 DDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEP 435
DD+IL+S G I+YQGPR+ VL+FF +GF CP RK VADFLQEVTS+K+QQQYW+ P
Sbjct: 376 DDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRP 435
Query: 436 YRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRE 495
YR+V F + F+S+ GKKL +L +PFDKR +H AAL+T YGV + +LL+ + +
Sbjct: 436 YRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLKINFAWQ 495
Query: 496 LLPMKRNSFVYIFKLSQ 512
MK+N+F+Y+FK Q
Sbjct: 496 KQLMKQNAFIYVFKFVQ 512
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 7.8e-124, Sum P(2) = 7.8e-124
Identities = 172/299 (57%), Positives = 230/299 (76%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
ISQHD+HI EMT RET+ FSARCQGVGSR +++ E+++REK GI PDP+ID +MKA +
Sbjct: 218 ISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISV 277
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
+G + S+ TDYILKILGLD+CA+T+VG+ + RGISGGQ+KR+TT EM+VGP +ALFMDEI
Sbjct: 278 KGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEI 337
Query: 338 SN----STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
+N ST FQI+ SL+Q HI T+ +SLLQPAPE+YDLFDDI+L++ G IVY GPR+
Sbjct: 338 TNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRD 397
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
VL+FF+ GF+CP+RKGVADFLQEV S+K+Q QYW + P+ FV+V + FK +
Sbjct: 398 DVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEI 457
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G+K+E+ L P+D K+H+ AL+ +Y + + +L +C+SRE L MKRN FVY+FK Q
Sbjct: 458 GRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQ 516
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.1e-118, Sum P(2) = 2.1e-118
Identities = 165/300 (55%), Positives = 222/300 (74%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYE-MLAELTRREKAAGIKPDPDIDVFMKAAA 276
ISQ D HI E+TVRETL F+ARCQG + + +LTR EK GI+P +ID FMKAA+
Sbjct: 239 ISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAAS 298
Query: 277 TEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
+G++ SV TDY+LK+LGLDVC+DTMVG++++RG+SGGQRKRVTTGEM VGP + LFMDE
Sbjct: 299 VKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDE 358
Query: 337 IS----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392
IS +STTFQIV +R F+H+++ T+L++LLQPAPET+DLFDD+IL+S G++VYQGPR
Sbjct: 359 ISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPR 418
Query: 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFY 452
E V+ FF+ +GF P RKGVADFLQEVTS+K+Q QYWA +PY+F+ V F++
Sbjct: 419 EDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSK 478
Query: 453 LGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
G + +L PFDK+ + +AL + +S + L+ C RELL +KR+ F+Y F+ Q
Sbjct: 479 YGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQ 538
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 6.0e-97, P = 6.0e-97
Identities = 218/455 (47%), Positives = 297/455 (65%)
Query: 73 EANEVDVNNLGQQERQRLVEKLVKV--AEVYNEEFLLKLKNRIARVGISLPTIEVRFEHL 130
+ E D ++ R R+ +K+ EV E+ ++ I + +LPT+ L
Sbjct: 85 KVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKR--ALPTLPNAA--L 140
Query: 131 NVEAEAYVGSRALPTFFNFCANIVEGFLNSLN--ILPSRKKHLTILKDVSGIIRPGRMTL 188
N+ AE G R L FNF L ++ I PSR +T+L G G+ TL
Sbjct: 141 NI-AER--GLRLLG--FNFTKTTKVTILRDVSGIIKPSR---MTLLL---GPPSSGKTTL 189
Query: 189 LLGPPG----SVKTTXXXXXXXXXXXXXXNR---CDISQHDVHIGEMTVRETLAFSARCQ 241
LL G S+K T + ISQ+DVH+G MTV+ETL FSARCQ
Sbjct: 190 LLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQ 249
Query: 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301
GVG+RY++L+EL RREK AGI P+P++D+FMK+ A + S+ITDY L+ILGLD+C DT
Sbjct: 250 GVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDT 309
Query: 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS----NSTTFQIVNSLRQFIHILE 357
+VGDE++RGISGGQ+KRVTTGEM+VGP + LFMDEIS +STT+QIV L++ + +
Sbjct: 310 VVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTD 369
Query: 358 GTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417
T+L+SLLQPAPET++LFDDIIL+S G IVYQGPR++VL FF+ GF+CP RKG ADFLQ
Sbjct: 370 ATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQ 429
Query: 418 EVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTT 477
EVTS+K+Q+QYWA ++PY +++V F+ F++F++G LE +L +P+D+ KSH A+L
Sbjct: 430 EVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVF 489
Query: 478 KIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
K + V + QL + C RELL MKRN+F YI K Q
Sbjct: 490 KKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQ 524
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 2.6e-93, P = 2.6e-93
Identities = 179/299 (59%), Positives = 231/299 (77%)
Query: 218 ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
ISQ+D+HI EMTVRET+ FSARCQGVGSR +++ E+++REK GI PD ++D +MKA +
Sbjct: 253 ISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISV 312
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
EG + S+ TDYILKILGLD+CA+ ++GD + RGISGGQ+KR+TT EM+VGP +ALFMDEI
Sbjct: 313 EGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEI 372
Query: 338 SN----STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
+N ST FQIV SL+QF HI T+L+SLLQPAPE+YDLFDDI+L++ G IVY GPR
Sbjct: 373 TNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRG 432
Query: 394 YVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYL 453
VL FF+ GF CP+RKGVADFLQEV S+K+Q QYW E+ PY FV+V+ + FK +
Sbjct: 433 EVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSI 492
Query: 454 GKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
GKK+ED L P+D+ KSH+ AL+ +Y + +L +C+SRE L MKRN FVYIFK +Q
Sbjct: 493 GKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQ 551
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 521 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-103 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-49 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-35 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-29 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-25 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-17 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-15 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-12 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-11 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-11 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-11 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-10 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-10 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-10 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-09 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-09 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-09 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-09 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-08 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-08 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-07 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-07 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-07 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-06 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-06 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-06 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-06 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-06 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-06 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-06 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-06 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-05 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-05 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-05 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-05 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-05 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-05 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-04 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-04 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-04 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-04 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 0.001 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 0.001 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 0.002 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 0.002 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 0.002 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.002 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 0.002 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 0.003 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 0.003 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.003 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 0.003 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 0.003 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 0.003 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 0.003 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 691 bits (1786), Expect = 0.0
Identities = 307/540 (56%), Positives = 391/540 (72%), Gaps = 39/540 (7%)
Query: 11 VSNSLRAGIT-SVWRSNSVSAGAFSMSSREEQ------DDEEALIWAAVLEKLPTYNRLK 63
S+R I+ SV RS+ FS S+ + +DEEAL WAA +EKLPTY+RL+
Sbjct: 4 RGGSMRRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAA-IEKLPTYSRLR 62
Query: 64 KGILTT--------SRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIAR 115
I+ + ++ EVDV L +RQ+ ++ + KVAE NE+FL K +NRI R
Sbjct: 63 TSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDR 122
Query: 116 VGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILK 175
VGI LPT+EVRFEHL VEA+ Y+GSRALPT N NI E L L I ++K LTILK
Sbjct: 123 VGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILK 182
Query: 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCD------------------ 217
D SGII+P RMTLLLGPP S KTTLLLALAGKLD SLK +
Sbjct: 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSA 242
Query: 218 -ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAA 276
ISQ+DVH+G MTV+ETL FSARCQGVG+RY++L+EL RREK AGI P+ ++D+FMKA A
Sbjct: 243 YISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATA 302
Query: 277 TEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
EG + S+ITDY LKILGLD+C DT+VGDE++RGISGGQ+KRVTTGEM+VGP + LFMDE
Sbjct: 303 MEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDE 362
Query: 337 IS----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392
IS +STT+QIV L+Q +H+ E T+L+SLLQPAPET+DLFDDIIL+S G IVYQGPR
Sbjct: 363 ISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 422
Query: 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFY 452
+++LEFF+ GF+CP+RKG ADFLQEVTS+K+Q+QYWA +PYR+++V F + FKSF+
Sbjct: 423 DHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFH 482
Query: 453 LGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQ 512
+G +LE+EL +PFDK +SH+AAL Y V + +LL++C +E L MKRN+FVY+FK Q
Sbjct: 483 VGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQ 542
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-103
Identities = 118/456 (25%), Positives = 201/456 (44%), Gaps = 75/456 (16%)
Query: 102 NEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLN 159
+ ++ + I I + V +++L+ A S PTF N I+
Sbjct: 5 AKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGFR 63
Query: 160 SLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN----- 214
L K ILK + G+I+PG +T++LG PGS +TLL +A D
Sbjct: 64 KL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI 122
Query: 215 --------------RCD---ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRRE 257
R D ++ DVH +TV ETL F+ARC+ +R + ++ +
Sbjct: 123 TYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAK 182
Query: 258 KAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317
I D + GL +T VG++ +RG+SGG+RK
Sbjct: 183 H--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGERK 216
Query: 318 RVTTGEMLVGPAQALFMDEIS----NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYD 373
RV+ E +G A+ D + ++T + + +L+ +IL+ T L+++ Q + + Y+
Sbjct: 217 RVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYE 276
Query: 374 LFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREE 433
LFD +I++ G+ +Y GP + ++F+ MGF+CP R+ ADFL +TS E +Q E
Sbjct: 277 LFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGYE 335
Query: 434 EP-YRFVTVKGFTDTFKSFYLGKKLEDELRIPFDK----------RKSH-----RAALTT 477
+ R T + F +++ +L E+ D+ R+SH + +
Sbjct: 336 KKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPS 393
Query: 478 KIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQN 513
Y VS ++ C++R L MK N +F + N
Sbjct: 394 SPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGN 429
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-49
Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 57/243 (23%)
Query: 160 SLNILPSRKKH----LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR 215
S + + ILKD SG+++PG M L+LG PGS +TLL ALA + + ++
Sbjct: 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS-- 62
Query: 216 CDISQHDVHIGEMTVRETLAFSARCQG----VGSRYEMLAELTRREKAAGIKPDPDIDVF 271
+ D+H + +E F+ + G V LT RE
Sbjct: 63 ---VEGDIHYNGIPYKE---FAEKYPGEIIYVSEEDVHFPTLTVRET------------- 103
Query: 272 MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331
+ A G+E +RGISGG+RKRV+ E LV A
Sbjct: 104 LDFALR------------------------CKGNEFVRGISGGERKRVSIAEALVSRASV 139
Query: 332 LFMDEISN----STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV 387
L D + ST +I+ +R +L+ T +SL Q + E YDLFD ++++ G +
Sbjct: 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
Query: 388 YQG 390
Y G
Sbjct: 200 YYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 5e-35
Identities = 80/309 (25%), Positives = 131/309 (42%), Gaps = 62/309 (20%)
Query: 141 RALPTFFNFCANIVEGFLNSLNILP--SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKT 198
R F + L S + +LK+VSG+ +PG + ++G G+ KT
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKT 65
Query: 199 TLLLALAGKLDSSLKNRCDIS-------------------QHDVHIGEMTVRETLAFSAR 239
TL+ ALA + +K + Q D+ I +TVRE L F A
Sbjct: 66 TLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH 125
Query: 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA 299
M +T++EK + V+ LGL CA
Sbjct: 126 -------LRMPRRVTKKEKRERVD-------------------EVLQA-----LGLRKCA 154
Query: 300 DTMVGDE-ILRGISGGQRKRVTTGEMLVGPAQALFMDE----ISNSTTFQIVNSLRQFIH 354
+T +G ++G+SGG+RKR+ L+ LF DE + + + +V L+
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK---G 211
Query: 355 ILEG--TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGV 412
+ + TI+ ++ QP+ E ++LFD IIL++ G + Y G + + FF +G CP+
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
Query: 413 ADFLQEVTS 421
ADF +V +
Sbjct: 272 ADFYVQVLA 280
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 61/246 (24%)
Query: 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS------------------ 210
K+ IL DVS + G++ +LG GS KTTLL A++G+++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 211 -SLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
K + Q D+ + +TVRETL ++A R+ + I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------RLPRKSSDAIRKKRVED 125
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329
V ++ A T +G +++GISGG+R+RV+ L+
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 330 QALFMDE----ISNSTTFQIVNSLRQFIHILEG-TILISLLQPAPETYDLFDDIILISNG 384
+ L +DE + + T +V++L Q +++++ QP + + LFD I+L+S+G
Sbjct: 163 KVLILDEPTSGLDSFTALNLVSTLSQLAR--RNRIVILTIHQPRSDLFRLFDRILLLSSG 220
Query: 385 HIVYQG 390
IVY G
Sbjct: 221 EIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 2e-27
Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 57/268 (21%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----------------LKN 214
TIL V+G+ PG + +LGP GS K+TLL ALAG++ + LK
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR 141
Query: 215 RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
++Q D+ +TVRETL F S + LT++EK +
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEK-------------ILV 181
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG-EMLVGPAQALF 333
A SVI++ LGL C +T++G+ +RGISGG+RKRV+ EML+ P+ L
Sbjct: 182 AE------SVISE-----LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLI 229
Query: 334 MDE----ISNSTTFQIVNSLRQFIHILEG-TILISLLQPAPETYDLFDDIILISNGHIVY 388
+DE + + +++V +L +G TI+ S+ QP+ Y +FD ++++S G ++
Sbjct: 230 LDEPTSGLDATAAYRLVLTLGSLAQ--KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 389 QGPREYVLEFFKFMGFECPKRKGVADFL 416
G + +F+ +GF ADFL
Sbjct: 288 FGKGSDAMAYFESVGFSPSFPMNPADFL 315
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-25
Identities = 74/295 (25%), Positives = 120/295 (40%), Gaps = 68/295 (23%)
Query: 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL------------- 208
N+ T L VS + PG + LLGP G+ KTTLL LAG L
Sbjct: 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD 68
Query: 209 --DSSLKNRCDIS---QHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIK 263
K R I Q E+TVRE L F AR G+ E+
Sbjct: 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE-------AEERI---- 117
Query: 264 PDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323
+ +L++ GL+ A+ V R +SGG ++R++
Sbjct: 118 -----------------------EELLELFGLEDKANKKV-----RTLSGGMKQRLSIAL 149
Query: 324 MLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTILIS--LLQPAPETYDLFDD 377
L+ + L +DE ++ + +I LR+ TIL+S +L+ E +L D
Sbjct: 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDR 206
Query: 378 IILISNGHIVYQGPREYVLEFFKFMGFEC--PKRKGVADFLQEVTSQKEQQQYWA 430
+I++++G I+ +G E + E F G P+R +A+ L+ + K +++
Sbjct: 207 VIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 67/305 (21%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG-----------------K 207
+K+ IL +V G ++PG +T L+G G+ KTTLL LA
Sbjct: 770 KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829
Query: 208 LDSSLKNRCD-ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP 266
LDSS + + Q D+H+ TVRE+L FSA + +++ EK
Sbjct: 830 LDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR-------QPKSVSKSEK-------- 874
Query: 267 DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG-EML 325
++ + ++K+L ++ AD +VG G++ QRKR+T G E++
Sbjct: 875 --MEYV--------------EEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELV 917
Query: 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHILEG---TILISLLQPAPETYDLFDDIILIS 382
P LF+DE ++ Q S+ + + L IL ++ QP+ ++ FD ++L+
Sbjct: 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQ 977
Query: 383 NG-HIVYQGP----REYVLEFFKFMGF-ECPKRKGVADFLQEV-----TSQKEQQQY--W 429
G VY G ++ +F+ G +CP+ A+++ EV + Q + W
Sbjct: 978 KGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVW 1037
Query: 430 AREEE 434
E
Sbjct: 1038 RNSSE 1042
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-20
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 18/94 (19%)
Query: 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----------------- 210
K +LK+VSG +PG +T ++GP G+ K+TLL ALAG+
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR 78
Query: 211 SLKNR-CDISQHDVHIGEMTVRETLAFSARCQGV 243
S + + Q D+ +TVRETL F+A+ +G+
Sbjct: 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 5e-17
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
Query: 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEG-TILI 362
LRG+SGG+RKRV+ LV LF+DE ++ S+ Q+++ LR+ G TI+
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD--TGRTIIC 166
Query: 363 SLLQPAPETYDLFDDIILISNGHIVYQG 390
S+ QP+ E ++LFD ++L+S G ++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-15
Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 73/264 (27%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG-KLDSSLKNRCDIS---------- 219
L +L++V+G RPG +T L+G G+ KTTL+ LAG K ++ IS
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 952
Query: 220 -------QHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFM 272
Q+D+H ++TVRE+L +SA + + E+++ EK
Sbjct: 953 RISGYCEQNDIHSPQVTVRESLIYSAFLR-------LPKEVSKEEKM------------- 992
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332
+ D +++++ LD D +VG + G+S QRKR+T LV +
Sbjct: 993 -----------MFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 333 FMDE-----------ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381
FMDE I T V++ R T++ ++ QP+ + ++ FD+++L+
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGR--------TVVCTIHQPSIDIFEAFDELLLM 1093
Query: 382 S-NGHIVYQGP----REYVLEFFK 400
G ++Y GP ++E+F+
Sbjct: 1094 KRGGQVIYSGPLGRNSHKIIEYFE 1117
|
Length = 1470 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-14
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG----------------KL 208
P + +L ++SG ++PG +T L+G G+ KTTLL LAG L
Sbjct: 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73
Query: 209 DSSLKNRCD-ISQHDVHIGEMTVRETLAFSARCQGVG 244
D + + + Q DVH +TVRE L FSA +G+
Sbjct: 74 DKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 72/252 (28%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----SSLKNRCDISQHDV-----H 224
L +VS IRPG ++G GS K+TLL L G S L + DI Q D +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540
Query: 225 IGEM---------TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275
IG + T+R+ +A A P D + ++AA
Sbjct: 541 IGYVPQDPRLFYGTLRDNIALGA-------------------------PYADDEEILRAA 575
Query: 276 ATEGQEVSVITDYI-LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
E++ +T+++ GLD +G E R +SGGQR+ V L+ L +
Sbjct: 576 -----ELAGVTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDPPILLL 625
Query: 335 DE----ISNSTTFQIVNSLRQFIHILEGTILI-----SLLQPAPETYDLFDDIILISNGH 385
DE + N + + + L++++ T+++ SLL DL D II++ NG
Sbjct: 626 DEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DLVDRIIVMDNGR 676
Query: 386 IVYQGPREYVLE 397
IV GP++ VLE
Sbjct: 677 IVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 56/244 (22%), Positives = 82/244 (33%), Gaps = 59/244 (24%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKNRCDISQHDV----HI 225
++DVS G +T LLG G+ KTTLL +A L + D + I
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 226 G----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275
G +T RE L + AR G+ E+ R
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSR-----KEIKAR------------------- 113
Query: 276 ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMD 335
+ K L L D VG S G +++V LV L +D
Sbjct: 114 ----------IAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLD 158
Query: 336 EISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393
E ++ + FI L EG +I E L D +I++ G +V +G E
Sbjct: 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218
Query: 394 YVLE 397
+
Sbjct: 219 ALDA 222
|
Length = 245 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 60/271 (22%), Positives = 102/271 (37%), Gaps = 72/271 (26%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL----------DSSLKNRCDISQHDV 223
L D+S I+ G + LLGP G+ K+TLL +AG L + +++ D
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 224 HIG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMK 273
+G MTV + +AF + + E +E R + +
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL----------- 121
Query: 274 AAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333
L + + D +SGGQR+RV L + L
Sbjct: 122 ---------------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160
Query: 334 MDEISNSTTFQIVNSLRQF---IHILEG--TILISLLQPAPETYDLFDDIILISNGHIVY 388
+DE + ++ LR++ +H G T+ ++ E +L D +++++ G I
Sbjct: 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVT--HDQEEALELADRVVVLNQGRIEQ 218
Query: 389 QGPREYVLEFFKFMGFECPKRKGVADFLQEV 419
GP + V + P + VA FL EV
Sbjct: 219 VGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 52/245 (21%), Positives = 85/245 (34%), Gaps = 81/245 (33%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL------------DSSLKNRCDISQ 220
L D+S I+ G L++GP GS K+TLL L G L D + + ++ +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 221 H--------DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFM 272
D TV E +AF G+ E+
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEE--------------------- 113
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332
+ L+++GL+ D +SGGQ++RV +L L
Sbjct: 114 ------------RVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDIL 156
Query: 333 FMDEISNSTTFQIVNSLRQFIHILEG------TILISLLQPAPETYDL------FDDIIL 380
+DE T R+ + +L+ TI+I T+DL D +I+
Sbjct: 157 LLDE---PTAGLDPAGRRELLELLKKLKAEGKTIIIV-------THDLDLLLELADRVIV 206
Query: 381 ISNGH 385
+ +G
Sbjct: 207 LEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 7e-11
Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 62/249 (24%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL-----DSSLKNRCDISQHDVH-I 225
+L+D+S + G +T L+GP G+ K+TLL A+ G L + + + + I
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77
Query: 226 G------------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMK 273
G +TV++ + G + L +++K
Sbjct: 78 GYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEKV------------ 120
Query: 274 AAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333
D L+ +G++ D +G+ +SGGQ++RV L L
Sbjct: 121 -------------DEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLL 162
Query: 334 MDEISNSTTFQIVNSLRQFIHIL--EG-TILISL--LQPAPETYDLFDDIILISNGHIVY 388
+DE + + L EG T+L+ L FD +I + N H++
Sbjct: 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---AYFDRVICL-NRHLIA 218
Query: 389 QGPREYVLE 397
GP E VL
Sbjct: 219 SGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 9e-11
Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 57/190 (30%)
Query: 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----------LKNR 215
+K + D+S + G + LLG G+ KTT L L G+L + +R
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 216 CDIS-------QHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDI 268
Q D E+TVRE L F AR +G+
Sbjct: 71 KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------------- 108
Query: 269 DVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328
E+ + +L++LGL A+ +SGG +++++ L+G
Sbjct: 109 ------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGG 151
Query: 329 AQALFMDEIS 338
L +DE +
Sbjct: 152 PSVLLLDEPT 161
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 23/225 (10%)
Query: 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE 227
KK + + VS ++PG +T LLGP G+ KTT L LAG L+ + DV
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEP 73
Query: 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITD 287
R L F + G+ R LT RE +++ F +G E++ +
Sbjct: 74 AEARRRLGFVSDSTGLYDR------LTARE---------NLEYFAGLYGLKGDELTARLE 118
Query: 288 YILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVN 347
+ LG++ D VG G S G R++V LV L +DE +
Sbjct: 119 ELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 348 SLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+LR+FI L G ++ E L D ++++ G +VY+G
Sbjct: 174 ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDSSLKNRCDISQHDVHIGEMT 229
IL D+S I G +T +LGP GS K+TLL LAG K S ++ I ++
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-----EVLLDGKDIASLS 70
Query: 230 VRE---TLAFSARCQGVGSRYEMLAELTRREKAA-GIKPDPDIDVFMKAAATEGQEVSVI 285
+E LA+ V LT E G P + +E I
Sbjct: 71 PKELAKKLAY------VPQSPSAPFGLTVYELVLLGRYP------HLGLFGRPSKEDEEI 118
Query: 286 TDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----T 341
+ L++LGL+ AD V + +SGG+R+RV L L +DE ++
Sbjct: 119 VEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 342 TFQIVNSLRQFIHILEGTILISLLQPAPETYDLF------DDIILISNGHIVYQGPREYV 395
+++ LR T+++ L +DL D +IL+ +G IV QG E V
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVL-------HDLNLAARYADHLILLKDGKIVAQGTPEEV 226
Query: 396 L 396
L
Sbjct: 227 L 227
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-10
Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 77/232 (33%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
T+L D+S I G + +LGP G+ K+TLL LAG L S ++ +
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--------SSGEILLDGKD-- 62
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
LA L+ +E A ++++ + L+
Sbjct: 63 ------------------LASLSPKELA--------------------RKIAYVPQ-ALE 83
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF-------Q 344
+LGL AD + +SGG+R+RV L L +DE T+ +
Sbjct: 84 LLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDE---PTSHLDIAHQIE 135
Query: 345 IVNSLRQFIHILEGTILISLLQPAPETYDL------FDDIILISNGHIVYQG 390
++ LR+ T+++ L +DL D +IL+ +G IV QG
Sbjct: 136 LLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
L DV+ + G + LLGP GS K+TLL +AG L+ R ++ D
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDSGRIRLNGQDA-------- 64
Query: 232 ETLAFSARCQGVG---SRYEMLAELTRREKAA-GIKPDPDIDVFMKAAATEGQEVSVITD 287
AR + +G Y + LT R+ A G++ +KA E
Sbjct: 65 --TRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEE--------- 113
Query: 288 YILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVN 347
+L+++ L +GD +SGGQR+RV L Q L +DE + ++
Sbjct: 114 -LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRK 167
Query: 348 SLRQFIHILEGTILIS---LLQPAPETYDLFDDIILISNGHI--------VYQGP-REYV 395
LR ++ L + ++ + E ++ D I+++SNG I VY P +V
Sbjct: 168 ELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFV 227
Query: 396 LEF 398
+ F
Sbjct: 228 MSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 70/246 (28%), Positives = 102/246 (41%), Gaps = 74/246 (30%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----SSLKNRCDISQHDV-----H 224
L +VS IR G ++G GS K+TLL LAG S L + DI Q D +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79
Query: 225 IGEM---------TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275
IG + T+R+ + A P D + ++AA
Sbjct: 80 IGYVPQDVTLFYGTLRDNITLGA-------------------------PLADDERILRAA 114
Query: 276 ATEGQEVSVITDYILKI-LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
E++ +TD++ K GLD +G E RG+SGGQR+ V L+ L +
Sbjct: 115 -----ELAGVTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLNDPPILLL 164
Query: 335 DEISNS----TTFQIVNSLRQFIHILEGTILI------SLLQPAPETYDLFDDIILISNG 384
DE +++ + ++ LRQ L LI SLL DL D II++ +G
Sbjct: 165 DEPTSAMDMNSEERLKERLRQL---LGDKTLIIITHRPSLL-------DLVDRIIVMDSG 214
Query: 385 HIVYQG 390
IV G
Sbjct: 215 RIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 64/255 (25%), Positives = 97/255 (38%), Gaps = 66/255 (25%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC-----DISQHDV---HI 225
L DVS I G + LLGP GS KTTLL +AG L+ D + V ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNV 76
Query: 226 G----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275
G MTV + +AF R V R E E R K
Sbjct: 77 GFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKV---------------- 117
Query: 276 ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMD 335
+LK++ LD AD +SGGQR+RV L + L +D
Sbjct: 118 -----------HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLD 161
Query: 336 EISNSTTFQIVNSLRQFIHILEGTILISLL---QPAPETYDLFDDIILISNGHI------ 386
E + ++ LR+++ L + ++ + E ++ D +++++ G I
Sbjct: 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221
Query: 387 --VYQGPR-EYVLEF 398
VY P +V F
Sbjct: 222 DEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 64/242 (26%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---SLKNRCDISQHDVHIG 226
+L+DVS ++PG ++GP G+ K+TLL A+ G K S + + + + IG
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK-PLEKERKRIG 71
Query: 227 EM------------TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ +VR+ + G+ + L++ +KA
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKADKAKV------------- 113
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
D L+ +GL AD +G+ +SGGQ++RV LV L +
Sbjct: 114 ------------DEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLL 156
Query: 335 DE----ISNSTTFQIVNSLRQFIHILEGTILISL--LQPAPETYDLFDDIILISNGHIVY 388
DE + T I LR+ + TIL+ L + FD ++L+ N +V
Sbjct: 157 DEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NRTVVA 211
Query: 389 QG 390
G
Sbjct: 212 SG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 66/274 (24%), Positives = 101/274 (36%), Gaps = 85/274 (31%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE---- 227
+LKDV+ I G +LLGP G K+TLL +AG L+ + + ++ I
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LE-------EPTSGEILIDGRDVT 68
Query: 228 ---------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP 266
MTV E +AF + +GV AE+ +R K
Sbjct: 69 DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK-----AEIDKRVKEV------ 117
Query: 267 DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326
K+LGL+ + +SGGQR+RV LV
Sbjct: 118 -----------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARALV 149
Query: 327 GPAQALFMDE-ISNSTTFQIVNSLRQFI---HILEGTILISLLQPAPETYDLFDDIILIS 382
+ +DE +SN ++ +R I H GT I + E L D I++++
Sbjct: 150 RKPKVFLLDEPLSN-LDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN 208
Query: 383 NGHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416
+G I G + +E P VA F+
Sbjct: 209 DGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-09
Identities = 53/261 (20%), Positives = 90/261 (34%), Gaps = 77/261 (29%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL----------DSSLKNRCDISQHD 222
LKDVS I G LL+GP GS K+TLL L G L + + +
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78
Query: 223 VHIG-----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVF 271
+G TV + +AF G+ R E+
Sbjct: 79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-PREEIEE-------------------- 117
Query: 272 MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331
L+++GL+ D + SGGQ++RV +L +
Sbjct: 118 -------------RVAEALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGPEI 159
Query: 332 LFMDE----ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDL------FDDIILI 381
L +DE + +++ L++ TI+I T+DL D ++++
Sbjct: 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-------THDLELVLEYADRVVVL 212
Query: 382 SNGHIVYQGPREYVLEFFKFM 402
+G I+ G + + +
Sbjct: 213 DDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 38/237 (16%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
L++V+ ++PG+M + GP GS K+TLL + D S DI HD+ + ++ +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLD 385
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
+ +R V + ++ A G +PD A E + V+ +
Sbjct: 386 S---WRSRLAVVSQTPFLFSDTVANNIALG-RPD--------ATQQEIEHVARLASVHDD 433
Query: 292 ILGLDVCADTMVGDEILRGI--SGGQRKRVTTGEMLVGPAQALFMDE----ISNSTTFQI 345
IL L DT VG+ RG+ SGGQ++R++ L+ A+ L +D+ + T QI
Sbjct: 434 ILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 346 VNSLRQFIHILEGTILI-----SLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+++LRQ+ T++I S L A +I+++ +GHI +G + + +
Sbjct: 491 LHNLRQWGE--GRTVIISAHRLSALTEA-------SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEG-TILI 362
LRG+S QRKR+T G L LF+DE ++ + IV L++ G IL
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 363 SLLQPAPETYDLFDDIILI-SNGHIVYQG 390
++ QP+ ++ FD ++L+ G VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG---------KLDSSLKNRCDISQHDV 223
+L+D+S I PG ++G GS K+TLL L G LD + DI +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG--VDLNDIDLASL 545
Query: 224 --HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQE 281
+G +++ FS + RE A P+ + ++AA +
Sbjct: 546 RRQVG-YVLQDPFLFSG---------------SIRENIALGNPEATDEEIIEAA-----Q 584
Query: 282 VSVITDYILKI-LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE---- 336
++ ++I + +G D T VG E +SGGQR+R+ L+ + L +DE
Sbjct: 585 LAGAHEFIENLPMGYD----TPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639
Query: 337 ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+ T I+ +L Q + I+I+ T D II++ G IV QG E +L
Sbjct: 640 LDPETEAIILQNLLQILQ-GRTVIIIA---HRLSTIRSADRIIVLDQGKIVEQGSHEELL 695
Query: 397 E 397
Sbjct: 696 A 696
|
Length = 709 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 4e-08
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 51/187 (27%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DS---SLKNRCDISQHDVH- 224
L L DVS +RPG + L+GP G+ KTTL ++G L S DI+ H
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHE 71
Query: 225 -----IG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
IG E+TV E + +A+ + + +L RRE+
Sbjct: 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE--------- 119
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329
+ A E +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 120 --ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDP 162
Query: 330 QALFMDE 336
+ L +DE
Sbjct: 163 KLLLLDE 169
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 56/248 (22%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHD--------- 222
+L VS +RPG + +LGP G+ K+TLL AL+G+L ++
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEEL 73
Query: 223 -VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQE 281
H + +LAF Q V ++ R +G +P +E
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREP---------------EE 111
Query: 282 VSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML------VGPAQALFMD 335
I L L A R +SGG+++RV +L V + LF+D
Sbjct: 112 DERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166
Query: 336 EISNS-------TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY 388
E +++ T ++ RQ EG ++++L D I+L+ G ++
Sbjct: 167 EPTSALDIAHQHHTLRL---ARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA 221
Query: 389 QGPREYVL 396
G + VL
Sbjct: 222 SGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 58/183 (31%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---SLKNRCDISQHDVH-- 224
L D+S + PG LLGP G KTTLL +AG + DS + R D++
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR-DVTGVPPERR 72
Query: 225 -IG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMK 273
IG +TV E +AF + +GV AE+ R +
Sbjct: 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPK-----AEIRARVRE-------------- 113
Query: 274 AAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333
+L+++GL+ + +SGGQ++RV L L
Sbjct: 114 ---------------LLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLL 153
Query: 334 MDE 336
+DE
Sbjct: 154 LDE 156
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
T+L DVS +RPG + +LGP G+ K+TLL AL+G+L ++ +
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLA 67
|
Length = 258 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 48/182 (26%), Positives = 70/182 (38%), Gaps = 52/182 (28%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD------------------SSLKN 214
+L VS + PG +LGP GS K+TLL LAG LD ++
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRR 409
Query: 215 RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
R + D H+ + TVRE L + + E+ A L R G+
Sbjct: 410 RVSVCAQDAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL-------R 455
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
A +G DT++G E +SGG+R+R+ L+ A L +
Sbjct: 456 ALPDG-------------------LDTVLG-EGGARLSGGERQRLALARALLADAPILLL 495
Query: 335 DE 336
DE
Sbjct: 496 DE 497
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
+ + LK VS I G ++GP GS K+T LL + G LD + D+
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKST-LLNILGGLDRPTSGEVRVDGTDIS 69
Query: 225 IGEMTVRETLAFSARCQG-VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
+++ +E AF R G V + +L +LT E ++++ + A +E
Sbjct: 70 --KLSEKELAAFRRRHIGFVFQSFNLLPDLTALE---------NVELPLLLAGVPKKERR 118
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE-ISN--- 339
+ +L+ +GL + + +SGGQ++RV L + + DE N
Sbjct: 119 ERAEELLERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 340 STTFQIVNSLRQFIHILEGTILISLLQPAPETYD-----LFDDIILISNGHI 386
T +++ LR+ TI++ T+D D II + +G I
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVV-------THDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-07
Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 24/230 (10%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
I+ V PG +T LLGP GS K+TLL LAG L D++ D+H ++ R
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLH--GLSRR 71
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAA-GIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
+ R V + LT R+ A G P A + + + D L
Sbjct: 72 AR---ARRVALVEQDSDTAVPLTVRDVVALGRIP------HRSLWAGDSPHDAAVVDRAL 122
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIV 346
L + + D + +SGG+R+RV L + L +DE +N + +
Sbjct: 123 ARTEL-----SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 347 NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+R+ G +++ L D ++++ G +V GP VL
Sbjct: 178 ALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 59/255 (23%), Positives = 86/255 (33%), Gaps = 85/255 (33%)
Query: 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLKNRCDISQHDV- 223
KK L VS + PG M LLGP G+ KTTL+ LA S
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP 67
Query: 224 -----HIG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDI 268
IG TVRE L + A +G+ S + KA
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS---------KEVKAR-------- 110
Query: 269 DVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328
D +L+++ L A +G +SGG R+RV + LVG
Sbjct: 111 -----------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGD 148
Query: 329 AQALFMDE----------ISNSTTFQIVNSLRQFI---HILEGTILISLLQPAPETYDLF 375
L +DE I + R I HI+E + L
Sbjct: 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE------------DVESLC 196
Query: 376 DDIILISNGHIVYQG 390
+ + +++ G +V++G
Sbjct: 197 NQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
IL ++S I+PG + ++G GS K+TL L + R + HD+ + +
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLT-KLIQRFYVPENGRVLVDGHDLALAD----- 70
Query: 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKI 292
A+ R GV + +L + R+ A P ++ ++AA G D+I +
Sbjct: 71 -PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH-----DFISE- 123
Query: 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQF 352
L DT+VG++ G+SGGQR+R+ L+ + L DE +++ ++ +++ +
Sbjct: 124 --LPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 353 IH-ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+H I G +I ++ T D II++ G IV QG + +L
Sbjct: 181 MHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR 215
++H IL+D+S I PGR+T LLG G+ K+TLL ALAG L R
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPR 58
|
Length = 272 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 54/182 (29%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD------------------SSLKNR 215
L+ VS + PG L+GP G+ K+TLL L G +D S +++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397
Query: 216 CD-ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ QH + T+ E + + + S AE+ + AG +D F+ A
Sbjct: 398 IAWVPQHP-FLFAGTIAENIRLA---RPDASD----AEIREALERAG------LDEFVAA 443
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
GL DT +G+ G+SGGQ +R+ + A L +
Sbjct: 444 LP----------------QGL----DTPIGEG-GAGLSGGQAQRLALARAFLRDAPLLLL 482
Query: 335 DE 336
DE
Sbjct: 483 DE 484
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 69/263 (26%), Positives = 106/263 (40%), Gaps = 74/263 (28%)
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV------ 223
+L D+S I G+M LLGP GS KTTLL +AG L+ DV
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHAR 72
Query: 224 --HIG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREK--AAGIKPDPDID 269
+G MTV + +AF L L RRE+ AA IK
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK------ 114
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329
+V+ +L+++ L AD +SGGQ++RV L
Sbjct: 115 ----------AKVTQ----LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 330 QALFMDEISNSTTFQIVNSLRQFIHILE-----GTILISLLQPAPETYDLFDDIILISNG 384
Q L +DE + Q+ LR+++ L ++ ++ Q E ++ D ++++S G
Sbjct: 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ--EEAMEVADRVVVMSQG 213
Query: 385 HIVYQG-PRE--------YVLEF 398
+I G P + +VLEF
Sbjct: 214 NIEQAGTPDQVWREPATRFVLEF 236
|
Length = 353 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 35/238 (14%)
Query: 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225
R IL D+S + PG ++GP G+ KTTLL L G+ S S +
Sbjct: 40 RRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-------SGDVTLL 91
Query: 226 GEMTVRETLAFSARCQGVG-SRYEMLAELTRREKAAGIKPDPDIDVFMKAA-ATEG--QE 281
G + F R + +G E+ RE DV + A+ G QE
Sbjct: 92 GRRFGKGETIFELR-KRIGLVSSELHERFRVRETV--------RDVVLSGFFASIGIYQE 142
Query: 282 VSVITDY-----ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
D +L++LG AD G +S G+++RV LV + L +DE
Sbjct: 143 DLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDE 197
Query: 337 ISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ Q++N L + L+ + A E F +L+ G +V QG
Sbjct: 198 PAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 75/253 (29%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSL-----KNRCDISQHD-- 222
T+LK V +R G + ++GP GS K+TLL + G L DS ++ +S+ +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 223 ---VHIG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
+G +TV E +AF L E TR + +I
Sbjct: 74 RLRRRMGMLFQSGALFDSLTVFENVAF------------PLREHTRL-------SEEEIR 114
Query: 270 --VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVG 327
V K L+ +GL D + +SGG +KRV L
Sbjct: 115 EIVLEK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRVALARALAL 153
Query: 328 PAQALFMDE-------ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380
+ L DE I++ ++ SL++ + + +I+++ + + D I +
Sbjct: 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL--TSIMVT--HDLDTAFAIADRIAV 209
Query: 381 ISNGHIVYQGPRE 393
+ +G IV +G E
Sbjct: 210 LYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 66/265 (24%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG---------KLDSSLKNRCDISQHD 222
T + D+S I+ G LLGP G KTTLL +AG LD +
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRP 78
Query: 223 VHI--------GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ + MTV E +AF + + ++ K A I KA
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFGLK-------------VRKKLKKAEI----------KA 115
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
E L+++GL+ AD +SGGQ++RV LV + L +
Sbjct: 116 RVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALARALVPEPKVLLL 160
Query: 335 DEISNSTTFQIVNSLRQFIHILEGTILISLL---QPAPETYDLFDDIILISNGHIVYQGP 391
DE ++ ++ +R+ + L+ + I+ + E + D I ++++G I G
Sbjct: 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
Query: 392 REYVLEFFKFMGFECPKRKGVADFL 416
E + +E P + VADF+
Sbjct: 221 PEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL---------DSSLKNRCDISQHD 222
+L++VS + PG L+G G+ K+TLL LAG+L L+ +
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76
Query: 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEV 282
+ E TV + + +G G E+LAEL E+A + DPD ++ + A +
Sbjct: 77 LD-PEKTVLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLAELEALLEELD 127
Query: 283 SVITDY----ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS 338
+ L LG D V +SGG R+RV L+ L +DE +
Sbjct: 128 GWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPT 181
Query: 339 NSTTFQIVNSLRQFIHILEGTILI 362
N + + L ++ GT+++
Sbjct: 182 NHLDLESIEWLEDYLKRYPGTVIV 205
|
Length = 530 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 62/249 (24%), Positives = 94/249 (37%), Gaps = 64/249 (25%)
Query: 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD------------------S 210
+LKD+S I PG ++GP GS K+TL+ L D
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 211 SLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDV 270
SL+ R I D + T+RE +A G E+ K A
Sbjct: 400 SLRKRIGIVSQDPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF----- 447
Query: 271 FMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI--SGGQRKRVTTGEMLVGP 328
I L DT+VG+ RG+ SGGQR+R+ L+
Sbjct: 448 ---------------------IANLPDGYDTIVGE---RGVNLSGGQRQRLAIARALLRN 483
Query: 329 AQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384
L +DE +++ + I ++L++ + T LI + + T D II++ NG
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGR--TTLIIAHRLS--TIKNADRIIVLDNG 539
Query: 385 HIVYQGPRE 393
IV +G E
Sbjct: 540 RIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 78/256 (30%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLAL-------AG--KLD---------SSLKN 214
+L+D+S I G L+GP GS K+TL+ + +G +D +SL+
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 215 RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ + DV + TV E +A+ +P + +A
Sbjct: 77 QIGLVSQDVFLFNDTVAENIAYG-------------------------RPGATREEVEEA 111
Query: 275 A-ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI--SGGQRKRVTTGEMLVGPAQA 331
A A E I+ L DT++G+ RG+ SGGQR+R+ L+
Sbjct: 112 ARAANAHEF---------IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPI 159
Query: 332 LFMDE----ISNSTTFQIVNSLRQFIHILEG--TILI----SLLQPAPETYDLFDDIILI 381
L +DE + + + +L +++ T +I S ++ A D I+++
Sbjct: 160 LILDEATSALDTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA-------DRIVVL 209
Query: 382 SNGHIVYQGPREYVLE 397
+G IV +G E +L
Sbjct: 210 EDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 71/236 (30%)
Query: 183 PGRMTLLLGPPGSVKTTLLLALAG---------KLDSSL----KNRCDISQHDVHIG--- 226
+T + G G+ K+TLL +AG L+ ++ + + ++ IG
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 227 -------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEG 279
+ VRE LAF G + + E
Sbjct: 82 QQYALFPHLNVRENLAF-------GLKRKRNREDRISV---------------------- 112
Query: 280 QEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE--- 336
D +L +LGLD + +SGG+++RV L + L +DE
Sbjct: 113 -------DELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 337 -ISNSTTFQIVNSLRQFIHILEG-TILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ + Q++ L+Q L I ++ E L D I+++ +G + Y G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIPVIFVT--HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 59/187 (31%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV-------- 223
T L D++ I G +LLGP G KTT L +AG L+ R I DV
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVTDLPPKDR 72
Query: 224 HIG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMK 273
I MTV + +AF + + V P +ID ++
Sbjct: 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDERVR 112
Query: 274 AAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333
A ++L ++ D + +SGGQR+RV G +V +
Sbjct: 113 EVA--------------ELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFL 153
Query: 334 MDE-ISN 339
MDE +SN
Sbjct: 154 MDEPLSN 160
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 56/246 (22%)
Query: 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221
N+ +LKD+S I G ++GP G+ K+TLL LAG+L
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP----------- 374
Query: 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQE 281
G + V ET+ Q R E+ + T ++ + ++
Sbjct: 375 --LSGTVKVGETVKIGYFDQ---HRDELDPDKTV------------LEELSEGFPDGDEQ 417
Query: 282 VSVITDYILKILG-LDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN- 339
+ LG + ++ + +SGG++ R+ ++L+ P L +DE +N
Sbjct: 418 ------EVRAYLGRFGFTGEDQ--EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469
Query: 340 ---STTFQIVNSLRQFIHILEGTILI-----SLLQPAPETYDLFDDIILISNGHIVYQGP 391
+ + +L F EGT+L+ L + I L+ + ++G
Sbjct: 470 LDIESLEALEEALLDF----EGTVLLVSHDRYFLD------RVATRIWLVEDKVEEFEGG 519
Query: 392 REYVLE 397
E LE
Sbjct: 520 YEDYLE 525
|
Length = 530 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 55/184 (29%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL----------DSSLKNRCD---- 217
L D++ I+ G++T L+G G+ K+TLL L G L L++
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394
Query: 218 -----ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFM 272
+SQ+ ++ T+RE + + + S E++A L AG+
Sbjct: 395 KQISWVSQNP-YLFAGTIRENILLA---RPDASDEEIIAAL----DQAGLL--------- 437
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332
+++ K GL DT++G+ G+SGGQ +R+ L+ PA L
Sbjct: 438 --------------EFVPKPDGL----DTVIGEG-GAGLSGGQAQRLALARALLSPASLL 478
Query: 333 FMDE 336
+DE
Sbjct: 479 LLDE 482
|
Length = 559 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 64/272 (23%), Positives = 98/272 (36%), Gaps = 61/272 (22%)
Query: 152 NIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211
N+ + + + + + + + DVS +R G L+G GS K+TL LAG L
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPP 343
Query: 212 LKNRCDISQHDVHIGEMTVRETLAFSARCQGV-----------GSRYEMLAELTRREKAA 260
D+ +T E R Q V + ++LAE
Sbjct: 344 SSGSIIFDGQDLD---LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE------PL 394
Query: 261 GIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQR 316
I G E +L+++GL E L +SGGQR
Sbjct: 395 RIHGG-----------GSGAERRARVAELLELVGL--------PPEFLDRYPHELSGGQR 435
Query: 317 KRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTIL-IS-----LLQ 366
+RV L + L +DE + S Q++N L+ L T L IS +
Sbjct: 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY 495
Query: 367 PAPETYDLFDDIILISNGHIVYQGPREYVLEF 398
A D + ++ +G IV +GP E V E
Sbjct: 496 IA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 49/187 (26%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDSS---LKNRCDISQHDVH- 224
LT + DVS +RPG + L+GP G+ KTTL + G K S + R DI+ H
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR-DITGLPPHR 75
Query: 225 -----IG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
I +TV E +A A + S + E+ A
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA--------- 126
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329
+ A +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 127 --RERARE-----------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQP 168
Query: 330 QALFMDE 336
+ L +DE
Sbjct: 169 KLLLLDE 175
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-06
Identities = 53/244 (21%), Positives = 85/244 (34%), Gaps = 68/244 (27%)
Query: 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG----------KLDSSLKNRCDI 218
+L D+S ++ G + LGP G+ KTT + + G S + +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70
Query: 219 SQH-----DVHI--GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVF 271
+ + +T RE L AR G+ ID
Sbjct: 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGI--------------------RKKRIDE- 109
Query: 272 MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331
+L ++GL A V G S G ++R+ L+G
Sbjct: 110 -----------------VLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDL 147
Query: 332 LFMDEISNSTTFQIVNSLRQFIHIL---EGTILIS--LLQPAPETYDLFDDIILISNGHI 386
L +DE +N + LR+ I L T+LIS LL E + D I +I+ G +
Sbjct: 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGIINKGKL 204
Query: 387 VYQG 390
+ +G
Sbjct: 205 IEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARC 240
+ G L+ G G+ KTTLL LAG L + I G+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRGD------------- 79
Query: 241 QGVGSRYEMLAELTRREKAAGIKPDPD-IDVFMKAAATEGQEVSVITDYILKILGLDVCA 299
R +A L G+K D ++ G+ + L I+GL
Sbjct: 80 -----RSRFMAYLGH---LPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE 131
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
DT+V R +S GQ+KR+ + + PA +DE
Sbjct: 132 DTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDE 163
|
Length = 214 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 53/178 (29%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS--------------LKNRCDI 218
L+DVS I G + ++LGP G KTTLL +AG + S R +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 219 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATE 278
Q++ + + V + +AF + +G+ RRE A
Sbjct: 80 FQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA------------------- 113
Query: 279 GQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
+L ++GL+ + +SGG R+RV L Q L +DE
Sbjct: 114 --------HQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQLLLLDE 158
|
Length = 259 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 84/302 (27%)
Query: 127 FEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI---LPSRKKHLTILKDVSGIIRP 183
F L+ E G+RA+ G + N+ P R + L +S +I P
Sbjct: 308 FTLLDSPPEKDTGTRAIER--------ARGDVEFRNVTFRYPGRDR--PALDSISLVIEP 357
Query: 184 GRMTLLLGPPGSVKTTLL------------------LALAGKLDSSLKNRCDISQHDVHI 225
G L+G GS K+TL+ LA +SL+ + + DV +
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417
Query: 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVI 285
T+ +A+ Q ++ AA Q+
Sbjct: 418 FNDTIANNIAYGRTEQA-----------------------DRAEIERALAAAYAQDF--- 451
Query: 286 TDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE----ISNST 341
+ L + DT +G+ + +SGGQR+R+ L+ A L +DE + N +
Sbjct: 452 ------VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
Query: 342 TFQIVNSLRQFIHILEG--TILI----SLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395
+ +L +++G T++I S ++ A D I+++ +G IV +G +
Sbjct: 505 ERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTHNEL 554
Query: 396 LE 397
L
Sbjct: 555 LA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 58/269 (21%), Positives = 96/269 (35%), Gaps = 84/269 (31%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSL-----KNRCDIS----- 219
IL V + G + +LG GS K+TLL + G L D ++ +S
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81
Query: 220 ----------QHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
Q +TV E +AF L E T+ P+ I
Sbjct: 82 EIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPESLIR 122
Query: 270 --VFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTTGEMLV 326
V MK L+++GL AD + +SGG RKRV +
Sbjct: 123 ELVLMK----------------LELVGLRGAAADLYPSE-----LSGGMRKRVALARAIA 161
Query: 327 GPAQALFMDE-------ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDII 379
+ LF+DE IS +++ L L T+++ + + D +
Sbjct: 162 LDPELLFLDEPTSGLDPISAGVIDELIRELN---DALGLTVIM-VTHDLDSLLTIADRVA 217
Query: 380 LISNGHIVYQGPRE--------YVLEFFK 400
++++G ++ +G E +V +FF
Sbjct: 218 VLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 71/270 (26%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDSS--LKNRCDIS-----QHD 222
++ ++ I G LLGP G KTT+L +AG DS + + DI+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87
Query: 223 VH--------IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
V+ MTV E +AF R Q + AE+T R A
Sbjct: 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPA-----AEITPRVMEA-------------- 128
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
L+++ L+ A +SGGQ++RV +V + L +
Sbjct: 129 ---------------LRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLL 168
Query: 335 DEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
DE ++ + Q+ N L+ L G + + E + D I+++ +G I G
Sbjct: 169 DESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
Query: 391 -PREYVLEFFKFMGFECPKRKGVADFLQEV 419
PRE +E PK VA F+ E+
Sbjct: 228 TPREI---------YEEPKNLFVARFIGEI 248
|
Length = 375 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 61/244 (25%), Positives = 100/244 (40%), Gaps = 60/244 (24%)
Query: 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-------- 213
S +K +L D++ I PG + +L GP GS KTT LL L G L S SLK
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYG 71
Query: 214 -NRCDISQHDVHIGEMTVRETL--AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDV 270
+ ++ Q +IG + L +AR Q V E+ L+ +E
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLLGFLTAR-QNVQMALELQPNLSYQEARE---------- 120
Query: 271 FMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI---LRGISGGQRKRVTTGEMLVG 327
+A A +L+ +GL GD + +SGGQ++RV LV
Sbjct: 121 --RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARALVH 158
Query: 328 PAQALFMDE----ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383
+ + DE + + + +V +++ TILI + D+ D I+ + +
Sbjct: 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI--VTHDNRILDVADRIVHMED 216
Query: 384 GHIV 387
G ++
Sbjct: 217 GKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 75/247 (30%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV---------H 224
L DVS +RPGR LLGP G+ K+TL L + + + ++ HD+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPRAALAR 75
Query: 225 IG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+G +++VR+ L + A G+ R E A I
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLS----------RAEARARIAE---------- 115
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
+L LGL AD V R ++GG R+RV L+ L +
Sbjct: 116 --------------LLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLL 156
Query: 335 DEI-------SNSTTFQIVNSL--RQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385
DE S + V +L Q + +L T L+ ++ D ++++ G
Sbjct: 157 DEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGR 209
Query: 386 IVYQGPR 392
++ G
Sbjct: 210 VLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211
R T L +VS ++ G + L+GP GS K+TLL A+AG L +
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 43/177 (24%), Positives = 63/177 (35%), Gaps = 43/177 (24%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
+LK ++ G + LLG G+ K+TLLL L G L G + +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-------------QSGAVLI-- 51
Query: 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKI 292
G Y L RR++ + DPD +F AA Q+V+ +
Sbjct: 52 --------DGEPLDYSRKGLLERRQRVGLVFQDPDDQLF---AADVDQDVA----FGPLN 96
Query: 293 LGLDVCADTMVGDEILRGI-------------SGGQRKRVTTGEMLVGPAQALFMDE 336
LGL E L + SGG++KRV + L +DE
Sbjct: 97 LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMT 229
+LKDVS I G+ ++GP GS K+T+L +L L D+S + I
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL-----RL---LFRFYDVSSGSILIDGQD 64
Query: 230 VRE-TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP-DIDVFMKAAATEGQEVSVITD 287
+RE TL R GV + +L T +PD D +V AA + + I D
Sbjct: 65 IREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI--EAA----KAAQIHD 118
Query: 288 YILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTF 343
KI+ DT+VG+ L+ +SGG+++RV ++ L +DE +++ T
Sbjct: 119 ---KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 344 QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+I +LR + +G I + + D II++ +G IV +G E +L
Sbjct: 175 EIQAALRD---VSKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 62/253 (24%), Positives = 90/253 (35%), Gaps = 71/253 (28%)
Query: 189 LLGPPGSVKTTLLLALAG--KLDSS--LKNRCDISQ---HDVHIG----------EMTVR 231
LLGP G KTTLL LAG + DS + + D++ H HI MTV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
E +AF + + V AE+ R A L+
Sbjct: 61 ENVAFGLKMRKVPR-----AEIKPRVLEA-----------------------------LR 86
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE----ISNSTTFQIVN 347
++ L D +SGGQ++RV LV + L +DE + Q+
Sbjct: 87 LVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL 141
Query: 348 SLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG-PREYVLEFFKFMGFEC 406
L+ L G + + E + D I ++ G I G P E +E
Sbjct: 142 ELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI---------YEE 191
Query: 407 PKRKGVADFLQEV 419
P VA F+ E+
Sbjct: 192 PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 55/260 (21%), Positives = 82/260 (31%), Gaps = 92/260 (35%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LKNRCDISQHDVH- 224
IL VS + G + LLG G+ KTTLL + G L R DI+ H
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLPPHE 71
Query: 225 ---------------IGEMTVRETLAFSARCQGVGSRYEMLAEL--------TRREKAAG 261
E+TV E L A + R L + RR++ AG
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAG 131
Query: 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTT 321
T+ SGG+++ +
Sbjct: 132 ---------------------------------------TL---------SGGEQQMLAI 143
Query: 322 GEMLVGPAQALFMDEISN-------STTFQIVNSLRQFIHILEG-TILISLLQPAPETYD 373
L+ + L +DE S F+ + LR EG TIL+ Q A +
Sbjct: 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-----EGVTILLV-EQNARFALE 197
Query: 374 LFDDIILISNGHIVYQGPRE 393
+ D ++ G +V +G
Sbjct: 198 IADRAYVLERGRVVLEGTAA 217
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 151 ANIVEGFLNSLN-ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206
NI+E ++ L+ + + L+ILK V +++ G ++GP GS K+TLL LAG
Sbjct: 4 ENIIE--VHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
|
Length = 228 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 59/240 (24%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG---------------KLDSSLKNR- 215
T++ +++ I+ G M LLGP G KTT+L +AG S++ R
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79
Query: 216 -CDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
C + Q M++ E + + + GV E +R K A
Sbjct: 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-------------- 120
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
L+++ L D V D+ ISGGQ++RV L+ + L
Sbjct: 121 ---------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKVLLF 160
Query: 335 DEISNSTTFQIVNSLRQFIHILEGTILISLL---QPAPETYDLFDDIILISNGHIVYQGP 391
DE ++ + S+R+ I L+ I+ L E + + D +I+++ G I+ G
Sbjct: 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 56/182 (30%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS-----SLKNRCDISQHDVH 224
L VS I+ G LLGP G KTTLL +AG S K+ ++ H
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 225 IG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ +TV E +AF R + + AE+ R A
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA-------------- 114
Query: 275 AATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334
L ++ L+ A+ +SGGQ++RV LV + L +
Sbjct: 115 ---------------LDLVQLEGYANRKPSQ-----LSGGQQQRVAIARALVNEPKVLLL 154
Query: 335 DE 336
DE
Sbjct: 155 DE 156
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 61/239 (25%), Positives = 99/239 (41%), Gaps = 42/239 (17%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----SSLKNRCDISQHDVHIGE 227
LK+ + + G +LG GS K+TLL LAG D S N +I+ + E
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA----SLDE 407
Query: 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITD 287
+RET++ + + S T R+ PD D + AA Q+V +
Sbjct: 408 QALRETISVLTQRVHLFSG-------TLRDNLRLANPDAS-DEELWAAL---QQVG-LEK 455
Query: 288 YILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTF 343
+ +T +G+ R +SGG+R+R+ L+ A +DE + T
Sbjct: 456 L---LESAPDGLNTWLGEG-GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 344 QIVNSLRQFIHILEGTILISLLQPAPETYDL-----FDDIILISNGHIVYQGPREYVLE 397
Q++ L F H T+L+ T+ L D II++ NG I+ +G +L
Sbjct: 512 QVLALL--FEHAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 9e-05
Identities = 58/270 (21%), Positives = 98/270 (36%), Gaps = 74/270 (27%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-LKNRCDISQHDV-HI---- 225
T+L D+S I G + L+G G KTTLL A+AG + ++ L R I+ D+ H
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 226 -------------GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFM 272
+ V + +AF R Q + A++ R A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA------------ 121
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332
LK++GL + +SGG ++R+ + L
Sbjct: 122 -----------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 333 FMDEISNSTTFQIVNSLRQFIHIL-----EGTILISLLQPAPETYDLFDDIILISNGHIV 387
+DE ++ I ++R+ I L E TIL + + L D ++ +G +
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELTIL-CVTHDQDDALTLADKAGIMKDGRLA 218
Query: 388 YQG-PREYVLEFFKFMGFECPKRKGVADFL 416
G P+ ++ P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 67/275 (24%), Positives = 105/275 (38%), Gaps = 61/275 (22%)
Query: 148 NFCANIVEGFL-NSLNILPSRKKHL-TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA 205
N+ I E L SLN RK+ ++D+S I G + LG G+ K+T L L
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 206 GKLDSSLKNRCDISQHD---------VHIG-EMTVRETLAFSARCQGVGSRYEMLAELTR 255
G L + + ++ D IG M + L + E+L
Sbjct: 72 GLLLPT-SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWW---DLPALDSLEVLKL--- 124
Query: 256 REKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315
I PD D F + D++ +IL L+ V R +S GQ
Sbjct: 125 ------IYEIPD-DEFAERL-----------DFLTEILDLEGFLKWPV-----RKLSLGQ 161
Query: 316 RKRVTTGEMLVGPAQALFMDEIS----NSTTFQIVNSLRQFIHILEGTILISLLQPAPET 371
R R L+ P + LF+DE + + I L+++ + T+L++ T
Sbjct: 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT-------T 214
Query: 372 YDLFDDI-------ILISNGHIVYQGPREYVLEFF 399
+ FDDI +LI G +V+ G + E F
Sbjct: 215 HI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRET 233
++ VS +R G + LLGP G+ KTT + L L + R ++ HDV VRE
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDV------VREP 68
Query: 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293
R V + ELT E ++ + + G E D +L +
Sbjct: 69 REVRRRIGIVFQDLSVDDELTGWE---------NLYIHARLYGVPGAERRERIDELLDFV 119
Query: 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFI 353
GL D +++ SGG R+R+ LV + LF+DE + Q + ++I
Sbjct: 120 GL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 354 HILEG----TILISLLQPAPETYDLFDDIILISNGHIVYQG 390
L+ TIL++ E L D + +I +G I+ +G
Sbjct: 175 EKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 73/258 (28%), Positives = 107/258 (41%), Gaps = 43/258 (16%)
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMT 229
T LKD+S ++ G LLGP G KTTLL +AG L+ + I Q G
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGTIYQG----GRDI 68
Query: 230 VRETLAFSARCQG-VGSRYEMLAELTRREKAA-GIKPDPDIDVFMKAAATEGQEVSVITD 287
R L R G V Y + LT + A G+K M A EV+
Sbjct: 69 TR--LPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG-----MGRA-----EVAERVA 116
Query: 288 YILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVN 347
+L ++GL G +SGGQ++RV L L +DE ++ ++
Sbjct: 117 ELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVRE 171
Query: 348 SLRQFIHILE-----GTILISLLQPAPETYDLFDDIILISNGHIVYQG-PREYVLEFFKF 401
LR I L+ TI+++ Q E + D I+++++G I G P+E
Sbjct: 172 HLRTEIRQLQRRLGVTTIMVTHDQ--EEALSMADRIVVMNHGVIEQVGTPQEI------- 222
Query: 402 MGFECPKRKGVADFLQEV 419
+ P VADF+ EV
Sbjct: 223 --YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV-----HIGE 227
ILK V+ ++ G + ++GP GS K+TL + G ++++ ++ I E
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK------YEVTEGEILFDGEDILE 72
Query: 228 MTVRE------TLAFS--ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEG 279
++ E LAF GV + + A + R A GI P+ F+K
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE-----FIK------ 121
Query: 280 QEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
++LGLD + + + G SGG++KR ++L+ + +DE
Sbjct: 122 -----ELKEKAELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
|
Length = 251 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 66/245 (26%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG-----------------KLDSSLKNRC 216
LK V+ + PG + LLG G+ K+TL+ L+G KLD L +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 217 DIS---QHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID-VFM 272
I Q I E+TV E L + R LT+ K G+ ID M
Sbjct: 81 GIGIIYQELSVIDELTVLENL-YIGR------------HLTK--KVCGV---NIIDWREM 122
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332
+ A +L +GL V D V + +S ++ + + L+ A+ +
Sbjct: 123 RVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVI 167
Query: 333 FMDEISNSTT-------FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385
MDE ++S T F I+N LR+ EGT ++ + E + D ++ +G
Sbjct: 168 IMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYTVMKDGS 222
Query: 386 IVYQG 390
V G
Sbjct: 223 SVCSG 227
|
Length = 510 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 34/175 (19%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LKNRCDISQHDVH-IGE 227
L D+S + PG + +L+GP G+ KTTL+ + GK D+++ H I
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 228 MTVRETLAFSARCQGVGSRYE---MLAELTRREK---AAGIKPDPDIDVFMKAAATEGQE 281
G+G +++ + LT RE A +F + A E +
Sbjct: 81 A-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR 127
Query: 282 VSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
+ D +L +GL D + +S GQ++ + G +L + L +DE
Sbjct: 128 I----DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDE 173
|
Length = 249 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-04
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209
+LKDVS I+PG ++GP GS K+TLL L D
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 53/244 (21%), Positives = 84/244 (34%), Gaps = 61/244 (25%)
Query: 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAF 236
+S +R G + L+GP G+ K+TLL +AG L S G +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS--------------GSIQFAGQPLE 60
Query: 237 SARCQGVGSRYEMLAELTRREK--AAGIKPDPDIDVF------MKAAATEGQEVSVITDY 288
+ AEL R + P + VF S +
Sbjct: 61 AWS----------AAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALN-- 108
Query: 289 ILKILGLDVCADTMVGDEILRGI---SGG--QRKRVTTGEMLVGP-----AQALFMDEIS 338
+V + D++ R + SGG QR R+ + V P Q L +DE
Sbjct: 109 -------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161
Query: 339 NSTTFQIVNSLRQFIHILE---GTILIS---LLQPAPETYDLFDDIILISNGHIVYQGPR 392
NS +L + + L +++S L T D + L+ G ++ G R
Sbjct: 162 NSLDVAQQAALDRLLSELCQQGIAVVMSSHDL----NHTLRHADRVWLLKQGKLLASGRR 217
Query: 393 EYVL 396
+ VL
Sbjct: 218 DEVL 221
|
Length = 248 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 47/228 (20%), Positives = 74/228 (32%), Gaps = 74/228 (32%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
+LK++S ++ G LLG GS K+TLL L G L GE+T+
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ-------------GEITLD 62
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
+ Q + +
Sbjct: 63 GVPVSDLEKA--------------LSSLISVLN---------------QRPYLFDTTLRN 93
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVN 347
LG R SGG+R+R+ +L+ A + +DE + T Q+
Sbjct: 94 NLG--------------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL-- 137
Query: 348 SLRQFIHILEGTILISLLQPAPETYDL-----FDDIILISNGHIVYQG 390
L +L+ LI + T+ L D I+ + NG I+ QG
Sbjct: 138 -LSLIFEVLKDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 68/251 (27%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG----------------------KLD 209
LK+++ I PG ++GP G+ K+TLL + KL
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75
Query: 210 SSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
+ I QH I +TV E + R + +L + +K
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK----------- 123
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329
+A L+ +GL A D+ +SGGQ++RV L
Sbjct: 124 --ERAL------------SALERVGLADKAYQRA-DQ----LSGGQQQRVAIARALAQQP 164
Query: 330 QALFMDEISNS----TTFQIVNSLRQFIHILEG-TILISLLQPAPETYDL----FDDIIL 380
+ DE S T+ Q+++ L++ I+ +G T++I+L Q DL D I+
Sbjct: 165 DLILADEPIASLDPKTSKQVMDYLKR-INKEDGITVIINLHQ-----VDLAKKYADRIVG 218
Query: 381 ISNGHIVYQGP 391
+ G IV+ G
Sbjct: 219 LKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPA 368
+SGGQR+RV L+ L +DE ++ L + + L EG +I +
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 369 PETYDLFDDIILISNGH 385
D +I++ +G
Sbjct: 141 ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-04
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---------------S 211
T L D+S + G + LLGP G+ KTTL+ + G K DS
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE 70
Query: 212 LKNRCD-ISQHDVHIGEMTVRETLAFS 237
+K R + + +TVRE L S
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH-DVHIGEMTVR 231
+L +++ I+PG ++GP GS K+TL + L R QH V + + +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL---------TKLLQRLYTPQHGQVLVDGVDLA 522
Query: 232 ETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
R Q GV + +L + R+ A P + + AA G D+I
Sbjct: 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAH-----DFIS 577
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IV 346
L +T VG E +SGGQR+R+ LVG + L DE +++ ++ I+
Sbjct: 578 ---ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 347 NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
++R+ I G +I + T D II++ G I G E +L
Sbjct: 634 RNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206
+ L+ VS + G + LLG G+ KTTLL + G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG 51
|
Length = 237 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 64/164 (39%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEM---- 228
LKD++ + G + ++GP GS K++LL AL G+L+ +S G +
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-------LSGSVSVPGSIAYVS 72
Query: 229 --------TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKP---DPDIDVFMKAAAT 277
T+RE + F G ++ R EK IK +PD+++
Sbjct: 73 QEPWIQNGTIRENILF-------GKPFDE----ERYEKV--IKACALEPDLEIL-----P 114
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGI--SGGQRKRV 319
+G T +G+ +GI SGGQ++R+
Sbjct: 115 DGDL-------------------TEIGE---KGINLSGGQKQRI 136
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 70/283 (24%), Positives = 124/283 (43%), Gaps = 57/283 (20%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
L D+S I G T L+G GS K+T+ + G L I+ + + TV +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS-------VI 285
REK + +PD + F+ AT G +V+ V
Sbjct: 82 I----------------------REKVGIVFQNPD-NQFV--GATVGDDVAFGLENRAVP 116
Query: 286 TDYILKILGLDVCADTMVGDEI---LRGISGGQRKRVT-TGEMLVGPAQALFMDEISN-- 339
++KI+ DV AD + D I +SGGQ++RV G + V P + + +DE ++
Sbjct: 117 RPEMIKIVR-DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP-KIIILDESTSML 174
Query: 340 --STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG-PREYV- 395
+ QI+ +R+ + +IS+ E ++ D ++++ +G ++ QG P E
Sbjct: 175 DPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFS 232
Query: 396 -LEFFKFMGFECP---------KRKGVADFLQEVTSQKEQQQY 428
+E K +G + P K KG++ QE+ ++++ QY
Sbjct: 233 KVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 53/256 (20%), Positives = 103/256 (40%), Gaps = 78/256 (30%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD------------------SSLKN 214
+LKD++ I+PG ++GP G+ KTTL+ L D SL++
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77
Query: 215 RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ D + T+ E + +P+ + ++A
Sbjct: 78 MIGVVLQDTFLFSGTIMENIRLG-------------------------RPNATDEEVIEA 112
Query: 275 AATEGQEVSVITDYILKIL-GLDVCADTMVGDEILRG--ISGGQRKRVTTGEMLVGPAQA 331
A G D+I+K+ G DT++G+ G +S G+R+ + ++ +
Sbjct: 113 AKEAG-----AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAMLRDPKI 160
Query: 332 LFMDE----ISNSTTFQIVNSLRQFIHILEG--TILI----SLLQPAPETYDLFDDIILI 381
L +DE I T I +L + +++G +I+I S ++ A D I+++
Sbjct: 161 LILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------DKILVL 210
Query: 382 SNGHIVYQGPREYVLE 397
+G I+ +G + +L
Sbjct: 211 DDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 46/233 (19%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKNRCDISQHDVHIGEM 228
IL D+S I+ T ++G GS K+TL L G + L N + D H
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 229 TV----RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
+ +E FS GS E L G K + D A E++
Sbjct: 549 FINYLPQEPYIFS------GSILENLL--------LGAKENVSQDEIWAAC-----EIAE 589
Query: 285 ITDYILKI-LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS--- 340
I D I + LG T + +E ISGGQ++R+ L+ ++ L +DE +++
Sbjct: 590 IKDDIENMPLGYQ----TELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 341 -TTFQIVNSLRQFIHILEGTILI--SLLQPAPETYDLFDDIILISNGHIVYQG 390
T +IVN+L +++ + TI+ L A ++ D II++ +G I+ QG
Sbjct: 645 ITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKIIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 27/261 (10%)
Query: 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLL---LALAGKLDSSLKNRCDISQH-D 222
R LT+L ++ + G L+GP GS K+T+L + L + ++ + H
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP 68
Query: 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEV 282
G + + +G ++ + + P + + M A E + +
Sbjct: 69 GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM 128
Query: 283 SVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT 342
+L ++GL AD M +SGGQ++RV L + + DE++++
Sbjct: 129 E-----LLDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
Query: 343 FQIV----NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398
++V N +R+ + T+L+ + + D + G IV QG + +
Sbjct: 179 PELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDKGRIVEQGKPDEI--- 234
Query: 399 FKFMGFECPKRKGVADFLQEV 419
F PK + +FL +V
Sbjct: 235 -----FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 21/89 (23%)
Query: 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDSSL---------KNRCD 217
T+L DVS I G + LLGP GS K+TLL +AG + DS +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 218 ISQHDVHIG----------EMTVRETLAF 236
+ IG +TV E +A
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 47/238 (19%)
Query: 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225
+ + LKDV+ I G ++GP GS K+T LL L G LD I+ D+
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPTSGEVLINGKDLT- 70
Query: 226 GEMTVRETLAFSARCQGVGS---RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEV 282
+++ +E R + +G + +L +LT E ++++ + A
Sbjct: 71 -KLSEKELAKL--RRKKIGFVFQNFNLLPDLTVLE---------NVELPLLIAGKSAGRR 118
Query: 283 SVITDYILKILGLDVCADTMVGDEILRG-----ISGGQRKRVTTGEMLVGPAQALFMDE- 336
+ +L++LGL ++ L +SGGQ++RV L+ + + DE
Sbjct: 119 KRAAEELLEVLGL---------EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169
Query: 337 ISN---STTFQIVNSLRQFIHILEGTILISLLQPAPETYDL-----FDDIILISNGHI 386
N T +++ LR+ TI++ T+D D +I + +G I
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTIIMV-------THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211
LKDV+ I G M ++GP G+ K+TLL +L G +D +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57
|
Length = 258 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 312 SGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEG-TILISLLQ 366
SGGQ++RV LV + + DE S + ++++ L+ I+ +G T++++L Q
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQ 207
Query: 367 PAPETYDL----FDDIILISNGHIVYQGPREYV 395
DL D II + G IV+ GP +
Sbjct: 208 -----VDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIG----- 226
ILKD+S PG +LG G+ K+TLL +AG +D + +G
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKEFNGEA-RPAPGIKVGYLPQE 76
Query: 227 -----EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQE 281
TVRE + +GV E+ L R + + +PD D M A E E
Sbjct: 77 PQLDPTKTVRENVE-----EGVA---EIKDALDRFNEISAKFAEPDAD--MDALLAEQAE 126
Query: 282 VSVITDYILKILG-------LDVCADTM---VGDEILRGISGGQRKRVTTGEMLVGPAQA 331
+ I D L++ D + D + +SGG+R+RV +L+
Sbjct: 127 LQEIIDA----ADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDM 182
Query: 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILI 362
L +DE +N + V L Q + GT++
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 52/254 (20%)
Query: 155 EGFLNSLNILPSRKKHL-TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK 213
G + SL L RK LK +S I G + +GP G+ KTT L L+G L
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--- 73
Query: 214 NRCDISQHDVHI-GEMTVRETLAFSARCQGV-GSRYEMLAELTRREKAAGIKPDPDIDVF 271
+ +V + G + + F R V G + ++ +L + + D+
Sbjct: 74 -----TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLP-- 126
Query: 272 MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRKRVTTGEMLVG 327
A + LD ++ + +E+L R +S GQR R L+
Sbjct: 127 -PARFKK---------------RLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH 170
Query: 328 PAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDI----- 378
+ LF+DE + ++R F+ T+L++ ++ + DI
Sbjct: 171 EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-------SHYM-KDIEALAR 222
Query: 379 --ILISNGHIVYQG 390
++I G ++Y G
Sbjct: 223 RVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 77/256 (30%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLAL-------AGK--LDSSLKNR 215
PSR ILK +S I PG+ L+G G K+T++ L +G+ LD
Sbjct: 11 PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRD 69
Query: 216 CDISQHDVHIG---------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP 266
++ IG + T+ E + + KPD
Sbjct: 70 LNLRWLRSQIGLVSQEPVLFDGTIAENIRYG-------------------------KPDA 104
Query: 267 DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG--ISGGQRKRVTTGEM 324
+ +AA + + I D+I+ L DT+VG+ RG +SGGQ++R+
Sbjct: 105 TDEEVEEAA-----KKANIHDFIMS---LPDGYDTLVGE---RGSQLSGGQKQRIAIARA 153
Query: 325 LVGPAQALFMDE----ISNSTTFQIVNSLRQFIHILEG--TILI----SLLQPAPETYDL 374
L+ + L +DE + + + +L + + +G TI+I S ++ A
Sbjct: 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIRNA------ 204
Query: 375 FDDIILISNGHIVYQG 390
D I ++ NG +V QG
Sbjct: 205 -DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL---------------DSSLKNRC 216
+ +S + G +L GP GS KTTLL +AG L D + C
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 217 D-ISQHDVHIGEMTVRETLAFSARCQG 242
+ + +TV E L F A G
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLG 102
|
Length = 207 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 55/181 (30%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LKNRCDISQHDVHI 225
+ +L+D++ + G +LGP G K+TLL +AG + L R ++ I
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR-PVTGPGPDI 74
Query: 226 GEM----------TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275
G + TV + +A +G RE+A
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA---------------- 111
Query: 276 ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMD 335
+L+++GL D+ +SGG R+RV L + L +D
Sbjct: 112 -----------KELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLLD 155
Query: 336 E 336
E
Sbjct: 156 E 156
|
Length = 248 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 85/199 (42%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE----- 227
++K + + G +L+GP G K+TLL +AG L+ I+ ++ IG
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-LER-------ITSGEIWIGGRVVNE 70
Query: 228 --------------------MTVRETLAFSARCQGVGSRYEMLAELTRR-EKAAGIKPDP 266
M+VRE +A+ + +G+ AE+ R +AA
Sbjct: 71 LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK-----AEIEERVAEAA------ 119
Query: 267 DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRKRVTTG 322
+IL L + +L R +SGGQR+RV G
Sbjct: 120 ------------------------RILEL---------EPLLDRKPRELSGGQRQRVAMG 146
Query: 323 EMLV-GPAQALFMDE-ISN 339
+V PA LF DE +SN
Sbjct: 147 RAIVREPAVFLF-DEPLSN 164
|
Length = 356 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 53/178 (29%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--------------KLDSSLKNRCDI 218
L+D++ + G + ++LGP G KTTLL +AG ++ R +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 219 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATE 278
Q++ + V++ +AF + GV R E A
Sbjct: 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIAHQ----------------- 111
Query: 279 GQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
+LK +GL+ + +SGGQR+RV L Q L +DE
Sbjct: 112 ----------MLKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154
|
Length = 255 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 25/102 (24%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLAL------------AGKLDSSLKNRCDISQ 220
LKD+S I G +T L+GP G K+TLL L G++ K+ D+
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 221 HDVH----IG---------EMTVRETLAFSARCQGVGSRYEM 249
+ +G ++ + +A+ R G+ + E+
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEEL 116
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 312 SGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQP 367
SGGQ++RV L+ + + DE S ++ Q+++ L++ T+++SL Q
Sbjct: 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205
Query: 368 APETYDL----FDDIILISNGHIVYQGPRE 393
DL D I+ + +G IV+ GP
Sbjct: 206 -----DLAREYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206
ILK V+ I+ G + L+GP GS K+TL + G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206
K L +VS I G ++G GS K+TL LAG
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55
|
Length = 252 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206
LKDVS I PG L+GP G+ K+TLL L G
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLL-------------LALAGKLDSSLKNRCDIS 219
L DVS IR G L GP G+ KTTLL + +AG+ + L+ R +
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR-QLP 75
Query: 220 QHDVHIG----------EMTVRETLAFSARCQGVGSR 246
IG + TV E +A +G R
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER 112
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARC 240
+RPG LLG G+ KTT L G D++ ++ D + ++ ++ +
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTT------VTSGDATVAGKSILTNISDVHQN 2013
Query: 241 QGVGSRYEMLAEL-TRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA 299
G +++ + +L T RE + ++ + +E+ + ++ ++ LGL + A
Sbjct: 2014 MGYCPQFDAIDDLLTGREH---------LYLYARLRGVPAEEIEKVANWSIQSLGLSLYA 2064
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
D + G SGG +++++T L+G + +DE
Sbjct: 2065 DRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDE 2096
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 77/260 (29%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---SLKNRCDIS 219
P+ + L DVS I+ G L+G GS K+TL A+ G K S + D+
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK-DLL 70
Query: 220 QHDVHIGE--------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKA 259
+ + + MT+ E +A R G S+ E +
Sbjct: 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKE-ARKEAVLLLL 129
Query: 260 AGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV 319
G+ + + E +SGGQR+RV
Sbjct: 130 VGVGLPEE---VLNRYPHE--------------------------------LSGGQRQRV 154
Query: 320 TTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTIL-----ISLLQPAPE 370
L + L DE ++ S QI++ L++ L T+L + ++
Sbjct: 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA---- 210
Query: 371 TYDLFDDIILISNGHIVYQG 390
+ D + ++ G IV +G
Sbjct: 211 --KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 63/191 (32%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---SLKNRCDIS 219
+T L+D+S + G L+GP G K+TLL +AG + S + ++
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE-PVT 69
Query: 220 QHDVHIGEM----------TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
G + TV + +A QGV RE+A
Sbjct: 70 GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE-------- 114
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV----TTGEML 325
+L+++GL + +SGG R+RV +
Sbjct: 115 -------------------LLELVGLSGFENAYPHQ-----LSGGMRQRVALARA---LA 147
Query: 326 VGPAQALFMDE 336
V P L +DE
Sbjct: 148 VDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 38/173 (21%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
+L +V+ I G + L+GP G K+TLL + G L Q GE+ + E
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA---------GQFSCT-GELWLNE 66
Query: 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPD----PDIDV-----FMKAAATEGQEVS 283
R +ML + + + D P + V F A +G
Sbjct: 67 Q------------RLDMLP--AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARR 112
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336
+ L+ GLD +SGGQR RV L+ +AL +DE
Sbjct: 113 NAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKALLLDE 160
|
Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKNRCDIS-------Q 220
T+ D+S + G + GP G+ KTTLL LAG L I Q
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 221 HDVHIG-------EMTVRETLAF 236
+++G E+T E L F
Sbjct: 76 ALLYLGHQPGIKTELTALENLHF 98
|
Length = 209 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 56/259 (21%)
Query: 158 LNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG---------KL 208
+ ++ I+P K L+ +S ++ G ++GP GS K+TL + G +L
Sbjct: 319 VENVTIVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377
Query: 209 DSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDI 268
D + + D HIG + Q V L T E A + D
Sbjct: 378 DGADLKQWDRETFGKHIGYLP-----------QDV-----ELFPGTVAENIARFGENADP 421
Query: 269 DVFMKAAATEG-QEVSVITDYILKILGLDVCADTMVGDEILRGI--SGGQRKRVTTGEML 325
+ ++AA G E+ IL L DT++G G SGGQR+R+ L
Sbjct: 422 EKIIEAAKLAGVHEL---------ILRLPDGYDTVIGP---GGATLSGGQRQRIALARAL 469
Query: 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHILE---GTILI-----SLLQPAPETYDLFDD 377
G + + +DE +++ + +L I L+ T+++ SLL D
Sbjct: 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-------DK 522
Query: 378 IILISNGHIVYQGPREYVL 396
I+++ +G I G R+ VL
Sbjct: 523 ILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.98 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.98 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.98 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.98 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.98 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.98 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.98 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.98 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.98 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.98 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.98 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.98 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.96 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.95 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.95 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.95 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.95 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.94 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.93 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.93 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.9 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.89 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.87 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.87 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.87 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.87 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.86 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.86 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.86 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.84 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.81 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.81 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.79 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.79 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.78 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.77 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.77 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.74 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.74 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.74 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.72 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.71 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.7 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.7 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.69 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.67 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.64 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.64 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.61 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.61 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.59 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.58 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.57 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.54 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.54 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.52 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.5 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.49 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.31 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.28 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.2 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.19 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.18 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.18 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.15 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.1 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.05 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.04 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.02 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.01 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.0 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.99 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.94 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.93 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.91 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.89 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.87 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.85 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.84 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.84 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.81 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.81 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.78 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.72 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.66 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.66 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.63 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.59 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.57 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.53 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.5 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.49 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.49 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.49 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.48 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.44 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.43 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.39 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.38 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.37 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.28 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.28 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.2 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.2 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.19 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.18 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.15 | |
| PRK13764 | 602 | ATPase; Provisional | 98.15 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.12 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.11 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.09 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.04 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.04 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.95 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 97.91 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.9 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.88 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 97.87 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 97.85 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.85 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 97.83 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.82 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 97.81 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.79 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.77 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.77 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.74 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 97.73 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.73 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.72 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.71 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.7 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 97.67 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 97.65 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 97.65 | |
| COG3044 | 554 | Predicted ATPase of the ABC class [General functio | 97.63 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.61 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.61 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.6 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.59 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.58 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.57 |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-83 Score=762.48 Aligned_cols=490 Identities=61% Similarity=0.990 Sum_probs=429.2
Q ss_pred CCcccCC---CC---CCCCcHHhhhHHHhhccCCchhhhhhhccccC-----CCC---cccccccCCcHHHHHHHHHHHH
Q 044321 30 AGAFSMS---SR---EEQDDEEALIWAAVLEKLPTYNRLKKGILTTS-----RGE---ANEVDVNNLGQQERQRLVEKLV 95 (521)
Q Consensus 30 ~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~l~~~~~~~~~~r~~ 95 (521)
+++|++. .+ +.+||||+|+||| +||||||+|+|++++.+. .|+ ..++|+.+||.++++.+++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1470)
T PLN03140 24 EDVFSGGSQSRRRTSSVDEDEEALKWAA-IEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVF 102 (1470)
T ss_pred hhhhhccchhccccccccCChHhhhhHH-hhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhh
Confidence 5888552 12 3478999999999 999999999999999653 122 2369999999999999999999
Q ss_pred HHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeee
Q 044321 96 KVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILK 175 (521)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~ 175 (521)
++.++|+++|+.+++++.+++|+++|+++|+|+||+|++++.++.+.+||++|.+.+.++.+....+...+++.++.||+
T Consensus 103 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~ 182 (1470)
T PLN03140 103 KVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILK 182 (1470)
T ss_pred cccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceecc
Confidence 99999999999999999999999999999999999999999999999999999999988876654433223334578999
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-------------------CceeeecCCccccCCCCHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
||||.|+||++++|+||||||||||||+|+|+++++. +..+||+|++.|++.+||+||+.|
T Consensus 183 ~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f 262 (1470)
T PLN03140 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDF 262 (1470)
T ss_pred CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHH
Confidence 9999999999999999999999999999999987641 113899999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+++|++.+.++++..++++.++..++.|+.+++.++++...++.+.+..++.+|+.+||++|+||.||++++++||||||
T Consensus 263 ~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGer 342 (1470)
T PLN03140 263 SARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342 (1470)
T ss_pred HHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccc
Confidence 99988765554444455566666666666677778887777666667788999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhh----HHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNST----TFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~----~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
|||+||++|+.+|++|||||||+++ +.++++.|+++++..+.|+|+++||+.++++++||+|++|++|+++|+|++
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~ 422 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 422 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCH
Confidence 9999999999999999999999965 456777788876655778888888988999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCccccccccc
Q 044321 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHR 472 (521)
Q Consensus 393 ~~v~~~f~~~g~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 472 (521)
+++.+||+++||.||+++++|||++++++++++.+||.....|+.+.++++|+++|++|+.++++.+++..|+++++.++
T Consensus 423 ~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 502 (1470)
T PLN03140 423 DHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHK 502 (1470)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccc
Confidence 99999999999999999999999999999988889997777888889999999999999999999988888887777777
Q ss_pred ccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 473 AALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 473 ~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
.++..++|.+|+|+|+++|++|+|++++||++++++|++|.+++++++
T Consensus 503 ~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~ 550 (1470)
T PLN03140 503 AALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIA 550 (1470)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 777778899999999999999999999999999999999999988653
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=670.28 Aligned_cols=439 Identities=55% Similarity=0.882 Sum_probs=402.5
Q ss_pred CCcHHhhhHHHhhccCCchhhhhhhccccCCCCcccccccCCcHHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC
Q 044321 41 QDDEEALIWAAVLEKLPTYNRLKKGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL 120 (521)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~ 120 (521)
++|||+++||+ ++||||++| +++.+.. .+++|+.+++..++..++++..+..++|+++++.+++++++++ ++
T Consensus 12 ~~~e~~~~~a~-~~~~pt~~~---~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAA-IERLPTFDR---SLLRSIF--ESEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHH-HhcCccccc---hhhhhhc--cCcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 34999999999 999999999 5554321 1279999999999999999999999999999999999999987 88
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
|.++++++++.+++++..| ||+.|...+.++..+...+.. ++....||+|+|+.++||+++.++||+|||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999988766 999999999888777666554 4455789999999999999999999999999999
Q ss_pred HHHHhCCCCCCC-------------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcC
Q 044321 201 LLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAG 261 (521)
Q Consensus 201 Lk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~ 261 (521)
|++|+|.++... +..+|++|+|+|+++|||+|+|.|+++|++++.+++ ++.++++..
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 999999875421 223899999999999999999999999999988765 444544321
Q ss_pred CCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCCh--
Q 044321 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN-- 339 (521)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs-- 339 (521)
.++|.+++.+||++|+||+||++++||+||||||||+||++++++|++++|||+|+
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 26789999999999999999999999999999999999999999999999999999
Q ss_pred --hhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 340 --STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 340 --~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++.++++.|+++++..+.|.+++++|++++++++||+|++|++|++||+||++++++||+++||.||+++++||||+
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 578899999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCcccccccccccccccccCCCHHHHHHHHHHHhHH
Q 044321 418 EVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELL 497 (521)
Q Consensus 418 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~ 497 (521)
++++.+++.|||.....|+.+.++.||.++|.+++.|+++..+++.|+++++.|+.++.+++|.+|+|+|+++|+.|+|+
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHhcccc
Q 044321 498 PMKRNSFVYIFKLSQNENAPRF 519 (521)
Q Consensus 498 ~~~r~~~~~~~~~~q~~~~~~~ 519 (521)
+|+||+++|+++++|.+++.++
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali 473 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALI 473 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHH
Confidence 9999999999999999988754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-56 Score=527.31 Aligned_cols=390 Identities=29% Similarity=0.446 Sum_probs=300.8
Q ss_pred CcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeE
Q 044321 101 YNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVS 178 (521)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS 178 (521)
|.+++++.+.++.++.+...| .++|+|+||+|++ ...+...+||++|.+.+....+...+. ..++...++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~vs 81 (1394)
T TIGR00956 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPMD 81 (1394)
T ss_pred CHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCCE
Confidence 445555443333334444444 8999999999998 444666789999988776654332221 122334578999999
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCC----CCC------------------CceeeecCCccccCCCCHHHHHHH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----SSL------------------KNRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~----~~~------------------~~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+++||+++|+||||||||||||+|+|+.. +.. ...+|++|++.+++.+||+||+.|
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence 9999999999999999999999999999863 221 013799999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+++++....... ..+..+ ..+..++.+|+.+||.+++||.||++++++||||||
T Consensus 162 ~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 215 (1394)
T TIGR00956 162 AARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215 (1394)
T ss_pred HHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccc
Confidence 887653211000 000000 011234668999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
|||+||++|+.+|++|||||||+++| .++++.|+++.++.+.|+|+++||+.++++++||+|++|++|+++|+|++
T Consensus 216 kRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 99999999999999999999999655 45677777776544678888888888899999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCccccc----
Q 044321 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKR---- 468 (521)
Q Consensus 393 ~~v~~~f~~~g~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 468 (521)
+++.+||+++||.||++.+++||+++++++.+ ++++... +...+.++++|+++|++|+.++++.+++..+.++.
T Consensus 296 ~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~-~~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 373 (1394)
T TIGR00956 296 DKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESD 373 (1394)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHhccChhh-hhccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchh
Confidence 99999999999999999999999999998754 3444321 11234678999999999998888877765432110
Q ss_pred -----------ccccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 469 -----------KSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 469 -----------~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
...+.....++|..|+|+|+++|++|++++++||+.+++.|+++.+++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~ 436 (1394)
T TIGR00956 374 TKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALIL 436 (1394)
T ss_pred hHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 0011123346799999999999999999999999999999999999998754
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=456.02 Aligned_cols=325 Identities=34% Similarity=0.535 Sum_probs=255.4
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
..+++.|+++++..... . ...+++|+|||+.++|||++||+||||||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~----------------------------~-~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTL 72 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEK----------------------------S-KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 (613)
T ss_pred ccceeEEEEEEEEecCC----------------------------C-CccceeeeCcEEEEecCeEEEEECCCCCCHHHH
Confidence 35689999999986321 0 134689999999999999999999999999999
Q ss_pred HHHHhCCCCCCC-------------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcC
Q 044321 201 LLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAG 261 (521)
Q Consensus 201 Lk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~ 261 (521)
|++|+|+..... +..+||.|+|.+++.+||+|++.|++.++.... ++
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~------- 138 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LS------- 138 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CC-------
Confidence 999999987531 123999999999999999999999998765421 11
Q ss_pred CCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh-
Q 044321 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS- 340 (521)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~- 340 (521)
.++.+.+++++++.+||.+|+||++|+...||+||||||||+||..|+.+|.||||||||++
T Consensus 139 -----------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 139 -----------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred -----------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 12345678999999999999999999988899999999999999999999999999999995
Q ss_pred ---hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 341 ---TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 341 ---~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
++.++++.|++++++ |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||.++|++||+..|++||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 567899999999987 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChH--HHHHHHhhccCCccccChhHHHHHHH-hchhhhhHHHhhcCcccccccccccccccccCCCHHHHHHHHHHH
Q 044321 418 EVTSQK--EQQQYWAREEEPYRFVTVKGFTDTFK-SFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSR 494 (521)
Q Consensus 418 ~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R 494 (521)
++.+.. .+... ...........++ .....+... ......... ......+..+||.|++.+++|
T Consensus 281 ~l~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 281 DLLSVDSGTRELE--------EAVRIAKLINKFSQTDNLKKTLE-ALEKSLSTS-----KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHccCCCchhHH--------hHHHHHHHhhhccccchhhhhHH-HHhhhcccc-----cccccccCCcHHHHHHHHHHH
Confidence 987732 11000 0000001111111 000001100 000000000 000111178999999999999
Q ss_pred hHHHhhcChHHHHHHHHHHHhccccC
Q 044321 495 ELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 495 ~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
.+..++||+.++..|++|.++++.++
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~l 372 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLL 372 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=443.83 Aligned_cols=359 Identities=24% Similarity=0.373 Sum_probs=250.8
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
+.++++|.++++.+...-...+.. .+...+...-. ...+.+.++++.+|+||||+|++||+++|+||||||||||
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~-~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTL 110 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGS----NIKRILGHKPK-ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTL 110 (659)
T ss_pred CceEEEEEeEEEEEccCCCccccc----ccccccccccc-cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 467899999999864220000010 01111111001 1112233455789999999999999999999999999999
Q ss_pred HHHHhCCCCCC--C---------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCC
Q 044321 201 LLALAGKLDSS--L---------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIK 263 (521)
Q Consensus 201 Lk~LaG~l~~~--~---------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~ 263 (521)
|++|+|++++. . ...+||+|++.+++.+||+||+.|++.+..... .+.
T Consensus 111 L~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~-------- 175 (659)
T PLN03211 111 LNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTK-------- 175 (659)
T ss_pred HHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCH--------
Confidence 99999998763 1 123799999999999999999999765432110 000
Q ss_pred CCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH
Q 044321 264 PDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF 343 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~ 343 (521)
.+....++++++.+||.+++||.+|+..+++|||||||||+||++|+.+|++|||||||+++|.
T Consensus 176 ----------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 176 ----------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred ----------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 0122356789999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHH---cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhh
Q 044321 344 QIVNSLRQFIHI---LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVT 420 (521)
Q Consensus 344 ~i~~~L~~l~~~---~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~ 420 (521)
.....+.+++++ .+.|+|+++|++..+++++||+|++|++|++++.|+++++.+||+++||.||.+.|+|||+.+++
T Consensus 240 ~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~ 319 (659)
T PLN03211 240 TAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLA 319 (659)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHc
Confidence 555444444432 36677777777766789999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCc-ccc--cc-----cccc-cccccccCCCHHHHHHHH
Q 044321 421 SQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIP-FDK--RK-----SHRA-ALTTKIYGVSEKQLLESC 491 (521)
Q Consensus 421 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~-----~~~~-~~~~~~y~~s~~~q~~~~ 491 (521)
+...+.........+ ...+.+.+.|++.. .+...+.+... ... .. ..+. ......|..|||+|+++|
T Consensus 320 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 395 (659)
T PLN03211 320 NGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395 (659)
T ss_pred CccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHH
Confidence 754211000000011 11234455554321 11111111100 000 00 0000 011123667999999999
Q ss_pred HHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 492 MSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 492 ~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
++|+++. +||+.++..|++|.++++.++
T Consensus 396 ~~R~~~~-~r~~~~~~~r~~~~i~~~ll~ 423 (659)
T PLN03211 396 LQRSLKE-RKHESFNTLRVFQVIAAALLA 423 (659)
T ss_pred HHHHHHH-HhCcHHHHHHHHHHHHHHHHH
Confidence 9999988 888888889999999988764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=442.54 Aligned_cols=314 Identities=28% Similarity=0.421 Sum_probs=247.2
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--C-----------------ceeeecCCccccCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--K-----------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~-----------------~~~~v~q~d~~~~~l 228 (521)
++++.+|+|||++|+|||+++|+|||||||||||++|+|+.++.. . ..+|++|++.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 345679999999999999999999999999999999999887631 1 128999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc-
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI- 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~- 307 (521)
||+||+.|++.+...... +. .+....++.+++.+||.+++||.+|+..
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TK------------------------KEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CH------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999998876432110 00 1122357889999999999999999853
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.++|||||||||+||++|+.+|++|||||||+++|.. +++.|+++.+ .+.|+|+++||+..+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 6899999999999999999999999999999976654 5555555543 3678888888887889999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcC
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRI 463 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 463 (521)
|+++|+|+++++.+||+++||.||+..+++||+.++++..... ......+.+++.+.|+++..+++..+.+..
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS-------ENESRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------ccchHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 9999999999999999999999999999999999987643211 000112346677888877766665544332
Q ss_pred cccccc---cccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 464 PFDKRK---SHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 464 ~~~~~~---~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
...... ..........|..++|.|+++|++|+++.++||+.++..++++.++++.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~ 375 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILI 375 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 111100 111111235688999999999999999999999999999999999887654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=460.41 Aligned_cols=335 Identities=23% Similarity=0.374 Sum_probs=256.9
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
..+.+.|+||++.+....+. .......+.+.+|+|||+.|+||++++|+||||||||||
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~---------------------~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTL 922 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEM---------------------KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTL 922 (1470)
T ss_pred CcceEEEEEEEEEEccCccc---------------------cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHH
Confidence 34579999999987432100 000112244579999999999999999999999999999
Q ss_pred HHHHhCCCCCC--C----------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCC
Q 044321 201 LLALAGKLDSS--L----------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGI 262 (521)
Q Consensus 201 Lk~LaG~l~~~--~----------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i 262 (521)
|++|+|+..+. . ...+|++|++.+++.+||+||+.|++.++..... +.
T Consensus 923 L~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~~------- 988 (1470)
T PLN03140 923 MDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------SK------- 988 (1470)
T ss_pred HHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------CH-------
Confidence 99999987531 0 1238999999999999999999998654321100 00
Q ss_pred CCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH
Q 044321 263 KPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT 342 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~ 342 (521)
.+....++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+++|
T Consensus 989 -----------------~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 989 -----------------EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred -----------------HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 011235678999999999999999987778999999999999999999999999999999876
Q ss_pred HH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC-CEEEEecCH----hHHHHHHHHc-CC-CCCCCCC
Q 044321 343 FQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN-GHIVYQGPR----EYVLEFFKFM-GF-ECPKRKG 411 (521)
Q Consensus 343 ~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~-G~iv~~G~~----~~v~~~f~~~-g~-~~p~~~~ 411 (521)
.. +++.|+++.+ .+.|+|+++||+..+++++||++++|++ |+++|+|+. +++.+||+++ |+ .||+..|
T Consensus 1052 ~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~N 1130 (1470)
T PLN03140 1052 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYN 1130 (1470)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCC
Confidence 65 4555555543 3678888887777678999999999996 899999996 5899999997 66 5999999
Q ss_pred HHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCcccccccccccccccccCCCHHHHHHHH
Q 044321 412 VADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESC 491 (521)
Q Consensus 412 ~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~ 491 (521)
+|||+.++++..... ....++++.|+.|+.+++..+++..........+.....++|..|+|.|+++|
T Consensus 1131 PAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l 1198 (1470)
T PLN03140 1131 PATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSC 1198 (1470)
T ss_pred chhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHH
Confidence 999999997642110 12247899999998877765544211100011111122467999999999999
Q ss_pred HHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 492 MSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 492 ~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
++|+++.+||||.++..|+++.+++++++
T Consensus 1199 ~~R~~~~~~R~p~~~~~r~~~~i~~al~~ 1227 (1470)
T PLN03140 1199 LWKQWWTYWRSPDYNLVRFFFTLAAALMV 1227 (1470)
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=446.55 Aligned_cols=306 Identities=28% Similarity=0.415 Sum_probs=257.9
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC------------------CCceeeecCCccccCCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS------------------LKNRCDISQHDVHIGEMT 229 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~------------------~~~~~~v~q~d~~~~~lT 229 (521)
.+++++|+|||+-++||.+|||+|+|||||||||++|+|+.... .+..+||.|+|.|.+++|
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 36678999999999999999999999999999999999985421 134599999999999999
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|+|.|.|++.++.+.. +. ..+..+.++++++.++|++++|..||... .
T Consensus 881 VrESL~fSA~LRlp~~-------v~------------------------~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------VS------------------------DEEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------CC------------------------HHHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999988754321 11 11223568999999999999999999866 9
Q ss_pred CCChHHHHHHHHHHHHcCCC-cEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe-C
Q 044321 310 GISGGQRKRVTTGEMLVGPA-QALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS-N 383 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P-~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~-~ 383 (521)
|||.+||||++||-.|+.+| .||||||||||+|. .+++.+++++. .|.|+++++|||+..+++.||++++|. .
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999998665 46777777776 589999999999999999999999997 5
Q ss_pred CEEEEecCH----hHHHHHHHHcC-CCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHH
Q 044321 384 GHIVYQGPR----EYVLEFFKFMG-FECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLE 458 (521)
Q Consensus 384 G~iv~~G~~----~~v~~~f~~~g-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (521)
|+.||.|+. +.+++||++.| ..||...|||||+.++++...+.. ...+|++.|++|..++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 899999986 45778999987 899999999999999987532211 1237999999999998887
Q ss_pred Hhhc---CcccccccccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 459 DELR---IPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 459 ~~l~---~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
+++. .+.+. ........+.|+.|+|.|++.|++|+++..||+|.+...|+++.++.++||
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~i 1138 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFI 1138 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhh
Confidence 6643 43332 233344457799999999999999999999999999999999999999987
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=444.21 Aligned_cols=306 Identities=26% Similarity=0.390 Sum_probs=237.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC---CC---------------CceeeecCCccccCCCCHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS---SL---------------KNRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~---~~---------------~~~~~v~q~d~~~~~lTV~ 231 (521)
.+.+|+|||+.|+||++++|+|||||||||||++|+|+.++ .. +..+||+|++.+++.+||+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 45799999999999999999999999999999999999862 21 1137999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|++.++..... + ..+....++++++.+||.+++|+.+|+. ..+|
T Consensus 855 E~L~~~a~l~~~~~~-------~------------------------~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~L 902 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSV-------S------------------------KSEKMEYVEEVIKLLEMESYADAVVGVP-GEGL 902 (1394)
T ss_pred HHHHHHHHhCCCCCC-------C------------------------HHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCC
Confidence 999998765421100 0 0112235678999999999999999863 3489
Q ss_pred ChHHHHHHHHHHHHcCCCc-EEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC-E
Q 044321 312 SGGQRKRVTTGEMLVGPAQ-ALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG-H 385 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~-iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G-~ 385 (521)
||||||||+||++|+.+|+ +|||||||+++|.. +++.|+++.+ .+.|+|+++||+...+++.||+|++|++| +
T Consensus 903 SgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~ 981 (1394)
T TIGR00956 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQ 981 (1394)
T ss_pred CHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCE
Confidence 9999999999999999997 99999999977654 4555555543 36677887777766678899999999997 9
Q ss_pred EEEecCH----hHHHHHHHHcCC-CCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHh
Q 044321 386 IVYQGPR----EYVLEFFKFMGF-ECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460 (521)
Q Consensus 386 iv~~G~~----~~v~~~f~~~g~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (521)
++|.|++ +++.+||+..|+ +||+..|+|||+.++.+..... ....++.+.|+.+...++..++
T Consensus 982 iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 982 TVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred EEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc------------chhccHHHHHhcCHHHHHHHHH
Confidence 9999997 578999999996 9999999999999987642110 0123567788877766655444
Q ss_pred hcC---cccccccccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 461 LRI---PFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 461 l~~---~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
+.. +.............++|..|+|.|+++|++|.++.+||||.++..|++|.+++++++
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~ 1112 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFI 1112 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 322 111010000111225799999999999999999999999999999999999998875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=351.17 Aligned_cols=208 Identities=24% Similarity=0.350 Sum_probs=174.3
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
.+.++..++|+|||++|++||+++|+|||||||||||+||+|+..++.+ ..++|+|+..+
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 3445677899999999999999999999999999999999998877632 12689999999
Q ss_pred cCCCCHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 225 IGEMTVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
||++||.||+.++... .+ ....++++.+..+|+.+||.+.+|.++
T Consensus 89 FPHlTvleNv~lap~~v~~----------------------------------~~k~eA~~~A~~lL~~VGL~~ka~~yP 134 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKK----------------------------------LSKAEAREKALELLEKVGLADKADAYP 134 (240)
T ss_pred cccchHHHHHHhhhHHHcC----------------------------------CCHHHHHHHHHHHHHHcCchhhhhhCc
Confidence 9999999999987431 11 112334556778999999999998766
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
. .|||||||||+|||||+.+|+++++|||||++|++.+..+.+.+..+ .+.|.+++||.+..+.+.+|||++|
T Consensus 135 ~-----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 135 A-----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred c-----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe
Confidence 5 59999999999999999999999999999999998776665554433 4566666789999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
++|+++..|+++++ |..|.+..+.+||..+
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 99999999999988 6789988899998653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=340.01 Aligned_cols=205 Identities=26% Similarity=0.324 Sum_probs=173.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~ 226 (521)
+...+|+|||++|++|++++|+|.||||||||+++|+++..|+.+ ..++|+|+..++.
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 345799999999999999999999999999999999999888742 1289999999999
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
..||.+|++|..++.+.. +.+++.++.++|+.+||++.++.++.
T Consensus 97 srTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~yP~-- 140 (339)
T COG1135 97 SRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRYPA-- 140 (339)
T ss_pred cchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccCch--
Confidence 999999999998766532 12345678889999999998887665
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+|||||||||+|||||+.+|+|||+|||||++|++..+. |+++-+++ +.+|++++|.++.+.++||+|.+|+
T Consensus 141 ---qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 141 ---QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred ---hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheEee
Confidence 599999999999999999999999999999776655554 44444443 5566667788999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhhC
Q 044321 383 NGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTS 421 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~s 421 (521)
+|++++.|+..++ |..|.+.-+..|+.+...
T Consensus 217 ~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 217 QGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred CCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999998 678988888888887654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.12 Aligned_cols=198 Identities=30% Similarity=0.395 Sum_probs=171.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+|+|||++|++||+++|+|||||||||||++|||+..|+.+ ..++|+|+..+||+|||+||++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 99999999999999999999999999999999999987632 3489999999999999999999
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
|+.+..+... ++++.++.++.+.|+|++..|+++. +|||||
T Consensus 98 f~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQ 138 (338)
T COG3839 98 FGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQ 138 (338)
T ss_pred hhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCChhh
Confidence 9988765421 2345578889999999999987764 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
||||+|||||+.+|++++||||.|++|.+....++..++++ -++++|.+||+..++..++|+|++|++|+|...|++
T Consensus 139 rQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p 218 (338)
T COG3839 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218 (338)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCCh
Confidence 99999999999999999999999988887766666554433 246667778999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 393 EYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 393 ~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
.++ |..|.+.-+|.|+-
T Consensus 219 ~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 219 LEL--------YERPANLFVAGFIG 235 (338)
T ss_pred HHH--------hhCccchhhhhhcC
Confidence 999 56788888888874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=352.17 Aligned_cols=205 Identities=29% Similarity=0.388 Sum_probs=173.6
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCH
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV 230 (521)
++...+|+|||++|++||+++|+|||||||||||++|||+..|+.+ ..++|+|+-.+||+|||
T Consensus 15 yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred cCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 3467899999999999999999999999999999999999988742 23899999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||++|+.+...... ..++..++.++|+.++|.+.++.++. .
T Consensus 95 ~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~p~-----q 136 (352)
T COG3842 95 EENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADRKPH-----Q 136 (352)
T ss_pred HHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhhChh-----h
Confidence 999999977332110 11234578889999999998877665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|||||||||+|||||+.+|++||||||.+++|......++. +.++. +++.|.+||+..+++.++|+|++|++|+|
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999999999999999999888766665544 44433 56666678999999999999999999999
Q ss_pred EEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 387 VYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 387 v~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
...|+++++ |..|...-+|+|+.+.
T Consensus 216 ~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 216 EQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 999999999 6789999999998754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=324.04 Aligned_cols=190 Identities=26% Similarity=0.327 Sum_probs=160.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~l 228 (521)
++++.+++|+||+|++||+++++|||||||||+||+|++++.|+.+ ..+||-|+..+||++
T Consensus 11 y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 11 YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred cCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc
Confidence 3467899999999999999999999999999999999999998742 128999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc--cccccccCc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV--CADTMVGDE 306 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~ 306 (521)
||.||+.+-..+.+... ++++.+++++|+.+||+. .++ +
T Consensus 91 Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~~~~~-----R 131 (309)
T COG1125 91 TVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPSEYAD-----R 131 (309)
T ss_pred cHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHHHHhh-----c
Confidence 99999999776654421 234557899999999974 455 4
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+++.|||||+|||.+||||+.+|++|+||||++++|+-....|++.+... =++|||.+||+.+|++.++|+|.+|++
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 55679999999999999999999999999999988876666665544332 245566678999999999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++.+++|++++
T Consensus 212 G~i~Q~~~P~~il 224 (309)
T COG1125 212 GEIVQYDTPDEIL 224 (309)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999999985
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=331.53 Aligned_cols=210 Identities=29% Similarity=0.435 Sum_probs=173.4
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
++..+...+++|||++|+.||+++|+|||||||||||++|+|+..|+.+ ..++|+|+..+
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YAL 88 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYAL 88 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhh
Confidence 3445667899999999999999999999999999999999999988632 22899999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|++|||.+||+|+.+++.. +|. ..+++.++.++|+.+.|++.++.++
T Consensus 89 F~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~ryP- 135 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLADRYP- 135 (345)
T ss_pred cccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhhcCc-
Confidence 9999999999999876521 010 1123456788999999998777554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+|||||||||++||||+..|++|+||||++++|..+.+.|++.+.+. -+.+.+.+||+.++++++||+|++|
T Consensus 136 ----~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 136 ----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred ----hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEe
Confidence 569999999999999999999999999999999988887777765443 1444555679999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
++|+|...|+++++ |..|...-+..|+-++
T Consensus 212 ~~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~~ 241 (345)
T COG1118 212 NQGRIEQVGPPDEV--------YDHPASRFVARFLGEV 241 (345)
T ss_pred cCCeeeeeCCHHHH--------hcCCCccceecccccc
Confidence 99999999999999 5677777777777554
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=321.84 Aligned_cols=177 Identities=24% Similarity=0.342 Sum_probs=147.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
..+|+||||+|.+||+++|+||||||||||||+|+|+..|+.+ ..+||+|++.++|.+||.+|+.|
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 5799999999999999999999999999999999999988642 23899999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+....+... .+...+++.+|+.+||.+..|.++ +.||||||
T Consensus 96 ~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMr 136 (248)
T COG1116 96 GLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDKYP-----HQLSGGMR 136 (248)
T ss_pred hhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhcCc-----cccChHHH
Confidence 977654211 112335778999999999888665 46999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeC--CEEE
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISN--GHIV 387 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv 387 (521)
|||+|||||+.+|++|+||||++++|......|++ +.++ .+.+++.+||+.+|+..++|||++|.+ |+|.
T Consensus 137 QRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 137 QRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999877766555554 4443 345666678999999999999999998 4453
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=316.46 Aligned_cols=192 Identities=24% Similarity=0.312 Sum_probs=154.9
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCcccc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHI 225 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~ 225 (521)
.+.+.||+||||+|++||+++|+||||||||||||+|.|++.|+.+ .-++++|+..+|
T Consensus 18 fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 18 FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97 (263)
T ss_pred cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc
Confidence 3567899999999999999999999999999999999999998742 128899999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-cccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg 304 (521)
..+||+||+.|..+-+.- + .....+..+..-|+.+||... ++.
T Consensus 98 ssltV~eNVafplre~~~---------l------------------------p~~~i~~lv~~KL~~VGL~~~~~~~--- 141 (263)
T COG1127 98 SSLTVFENVAFPLREHTK---------L------------------------PESLIRELVLMKLELVGLRGAAADL--- 141 (263)
T ss_pred cccchhHhhheehHhhcc---------C------------------------CHHHHHHHHHHHHHhcCCChhhhhh---
Confidence 999999999997653221 0 011223345556889999875 554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++.+|||||+||++|||||+.+|++||+||||+++|+.....+.+++..+ =+.|++++||+.++++.+||+|++|
T Consensus 142 --~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 142 --YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred --CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 45569999999999999999999999999999998875555444444333 1445555678999999999999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
.+|+|+++|+++++.+
T Consensus 220 ~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 220 ADGKVIAEGTPEELLA 235 (263)
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999999854
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=333.62 Aligned_cols=198 Identities=29% Similarity=0.398 Sum_probs=165.4
Q ss_pred cCCCC-cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCcccc
Q 044321 165 PSRKK-HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHI 225 (521)
Q Consensus 165 ~~~~~-~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~ 225 (521)
.+.++ .+.+|+||||+|++|++++|+||||||||||||+|+|++.|+.+ ..+|++|++.++
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 33445 57899999999999999999999999999999999999988631 138999999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+||+|++.|.+.+.+.... .....++++++.+||.+..++++
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~-- 134 (293)
T COG1131 91 PELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKKV-- 134 (293)
T ss_pred ccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcch--
Confidence 999999999999888764310 11235678999999998555544
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
++||+||||||+||.||+++|++|||||||+++|......+.++++.+ ++++|++++|...++..+||+|++|+
T Consensus 135 ---~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~ 211 (293)
T COG1131 135 ---RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211 (293)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe
Confidence 569999999999999999999999999999998887766666665543 33677778888999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHH
Q 044321 383 NGHIVYQGPREYVLEFFKF 401 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~ 401 (521)
+|++++.|+.+++...+..
T Consensus 212 ~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 212 DGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCEEEEeCCHHHHHHhhcc
Confidence 9999999999998766543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=324.34 Aligned_cols=190 Identities=31% Similarity=0.394 Sum_probs=156.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
++.||+||||+|++|++++|+||||||||||||+|+|+++|..+ .-+|++|.....+.+||
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 45799999999999999999999999999999999999987532 22899999888889999
Q ss_pred HHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 231 RETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+|.+.++..-. +... . ...+....++..|+.+|+.+.+++.+.+
T Consensus 94 ~d~V~~GR~p~~~~~~-------------------~------------~~~~D~~~v~~aL~~~~~~~la~r~~~~---- 138 (258)
T COG1120 94 YELVLLGRYPHLGLFG-------------------R------------PSKEDEEIVEEALELLGLEHLADRPVDE---- 138 (258)
T ss_pred eehHhhcCCccccccc-------------------C------------CCHhHHHHHHHHHHHhCcHHHhcCcccc----
Confidence 99998874321 1100 0 0111223577889999999999988764
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||||.|||||+++|++|||||||+.+|. ++++.++++.++. +.++|++.|+...+..+||++++|++|+
T Consensus 139 -LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 139 -LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred -cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999997654 6777777776543 4555556788899999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
++++|++++++
T Consensus 217 i~a~G~p~evl 227 (258)
T COG1120 217 IVAQGTPEEVL 227 (258)
T ss_pred EEeecCcchhc
Confidence 99999998875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=307.61 Aligned_cols=194 Identities=28% Similarity=0.330 Sum_probs=163.0
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc------------------eeeecCCccccC
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN------------------RCDISQHDVHIG 226 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~------------------~~~v~q~d~~~~ 226 (521)
++++....+++||||+++.|++++|+|||||||||+|++|++++.|+.+. .+.++.+..++.
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~ 88 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYA 88 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhh
Confidence 33334445999999999999999999999999999999999999987431 144455556788
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.||++|||.|.+++.+.. + .+.+.+++.+.+.|+|.++.|+.+|+
T Consensus 89 RlT~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rRv~~- 133 (245)
T COG4555 89 RLTARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRRVGE- 133 (245)
T ss_pred hhhHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHHHhh-
Confidence 899999999988765432 1 22345678899999999999999986
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+|.||||||+|||||+++|++++|||||+++|....+.+++.+.+. .+.+++.++|.++++..+||+|++|+.|
T Consensus 134 ----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 ----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred ----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999988887777776654 2566777789999999999999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++|+.|+++.+.+
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999988753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=316.04 Aligned_cols=189 Identities=25% Similarity=0.383 Sum_probs=150.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCc--cccCCCCHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHD--VHIGEMTVRET 233 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d--~~~~~lTV~E~ 233 (521)
++|+||||+|++|++++|+||||||||||+|+|+|++.|..+ ..+||||.. ..-+.+||+|.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 599999999999999999999999999999999999987521 248999964 22345899999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+..+..... .++...+ .+.++.++++|+.+|+.+.+|..+|+ |||
T Consensus 98 V~~g~~~~~-----g~~~~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSG 142 (254)
T COG1121 98 VLLGRYGKK-----GWFRRLN-------------------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSG 142 (254)
T ss_pred HHccCcccc-----ccccccc-------------------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCc
Confidence 887632111 0000000 11234678899999999999999886 999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||+|||.|||||+.+|++|+|||||++.|......+.++++++ .+.+|+++||+...+.++||+|++|+ +++++.|+
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~ 221 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGP 221 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccC
Confidence 9999999999999999999999999987766555555554433 26677778899999999999999995 78999999
Q ss_pred HhHHH
Q 044321 392 REYVL 396 (521)
Q Consensus 392 ~~~v~ 396 (521)
++++.
T Consensus 222 ~~~~~ 226 (254)
T COG1121 222 PEEVL 226 (254)
T ss_pred hhhcc
Confidence 99885
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=306.66 Aligned_cols=204 Identities=24% Similarity=0.312 Sum_probs=160.6
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------ceeeecCCc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------NRCDISQHD 222 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------~~~~v~q~d 222 (521)
+.+.+|+|||+.|+++++|||+|||||||||||++|..+.+.... ..+.|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 456899999999999999999999999999999999997653210 127899999
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADT 301 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt 301 (521)
..|| +|++||+.|+.+.++... . .+ .++++..|+...|-+ ..|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~-~-~l--------------------------------deiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD-K-EL--------------------------------DEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch-H-HH--------------------------------HHHHHHHHHHhHhHHHhHHH
Confidence 9998 999999999999887633 1 11 112222333333321 1111
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
. ++...+||||||||++|||||+.+|+|||||||||++|+.....+.+++.++ ..-+||++||.+..+.+..|+..+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taF 220 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAF 220 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhh
Confidence 1 1234569999999999999999999999999999998887777777766655 345666778999999999999999
Q ss_pred EeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 381 ISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+..|++|++|+.+++ |..|..+.+.||+.
T Consensus 221 f~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 221 FYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 999999999999998 77899988888874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=329.98 Aligned_cols=200 Identities=29% Similarity=0.405 Sum_probs=162.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||.||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADN 96 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHH
Confidence 4699999999999999999999999999999999999887531 23899999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..++.+. .|||
T Consensus 97 i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSg 137 (353)
T TIGR03265 97 IAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKYPG-----QLSG 137 (353)
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCChh-----hCCH
Confidence 999865322110 0122356789999999988876664 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++||||||++++|......+++.+++. .++++|+++|+..++..+||+|++|++|++++.|
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999998877766666655432 2456666788889999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++. ..|....++.|+.
T Consensus 218 ~~~~~~--------~~p~~~~~a~~~g 236 (353)
T TIGR03265 218 TPQEIY--------RHPATPFVADFVG 236 (353)
T ss_pred CHHHHH--------hCCCCHHHHHhcC
Confidence 999884 3455555555553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=328.86 Aligned_cols=200 Identities=25% Similarity=0.372 Sum_probs=163.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||.||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999987632 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..+.++. .|||
T Consensus 99 i~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSg 139 (351)
T PRK11432 99 VGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRYVD-----QISG 139 (351)
T ss_pred HHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 999865432210 1122356778999999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++||||||++++|....+.+++.++.. .++++++++|+..++..+||+|++|++|+++..|
T Consensus 140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999988887777766655432 2456677788999999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++. ..|....++.|+.
T Consensus 220 ~~~~~~--------~~p~~~~~a~~~g 238 (351)
T PRK11432 220 SPQELY--------RQPASRFMASFMG 238 (351)
T ss_pred CHHHHH--------hCCCchHHHHhcC
Confidence 999883 3465555666653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=329.33 Aligned_cols=187 Identities=23% Similarity=0.335 Sum_probs=156.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--C-----------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--K-----------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~-----------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.|+. + ..+|++|+..+|+++||+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~ 97 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence 469999999999999999999999999999999999988764 2 137899999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|+.+..+... .+....++++++.+||.+..++.+. .|
T Consensus 98 enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~~-----~L 138 (362)
T TIGR03258 98 DNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLPA-----QL 138 (362)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCChh-----hC
Confidence 99999865432210 0122346778999999988887665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||||+|||||+.+|++|||||||+++|....+.|++.+.+. ++++++++||+..++..+||+|++|++|+++
T Consensus 139 SgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 139 SGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999998887666666655432 2567777889999999999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
..|+++++.
T Consensus 219 ~~g~~~~~~ 227 (362)
T TIGR03258 219 AHGEPQALY 227 (362)
T ss_pred EEcCHHHHH
Confidence 999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=306.56 Aligned_cols=196 Identities=24% Similarity=0.291 Sum_probs=157.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~ 226 (521)
+++++|+||||+|++||+++|+|||||||||||++|+|+.+++.+ ..++|+|+..+.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 566899999999999999999999999999999999999887632 1289999999999
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.++|.+|+..+..-+. .....+ .++. ..+.+..+-+.|+.+|+.+.+-++.+.
T Consensus 95 r~sv~~NVl~grl~~~-s~~~sl----------fglf---------------sk~dk~~Al~aLervgi~~~A~qra~~- 147 (258)
T COG3638 95 RLSVLENVLLGRLGYT-STWRSL----------FGLF---------------SKEDKAQALDALERVGILDKAYQRAST- 147 (258)
T ss_pred ccHHHHHHHhhhcccc-hHHHHH----------hCCC---------------CHHHHHHHHHHHHHcCcHHHHHHHhcc-
Confidence 9999999987643211 110001 1111 112233455689999999988888765
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|||||+|||+|||||+.+|++||.|||++++|+ ++++.|+++.++.+.|+|+. .|..+.+.++||||+-|+
T Consensus 148 ----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 148 ----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRIIGLK 222 (258)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhheEec
Confidence 999999999999999999999999999997654 67788888776655555554 567788999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+|+|.||++++-
T Consensus 223 ~G~ivfDg~~~el~ 236 (258)
T COG3638 223 AGRIVFDGPASELT 236 (258)
T ss_pred CCcEEEeCChhhhh
Confidence 99999999998864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=325.42 Aligned_cols=187 Identities=21% Similarity=0.282 Sum_probs=154.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 4699999999999999999999999999999999999887521 238899998899999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....+.++++.+||.+..|.+++
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~~---- 139 (343)
T TIGR02314 98 TVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYPS---- 139 (343)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh----
Confidence 99999998754322110 0122345678999999988876664
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++++. .+.+||+++|+++.+.++||+|++|++|+
T Consensus 140 -~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~ 218 (343)
T TIGR02314 140 -NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (343)
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999988877666665555443 24566667888899999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|++++++
T Consensus 219 iv~~g~~~~v~ 229 (343)
T TIGR02314 219 LIEQGTVSEIF 229 (343)
T ss_pred EEEEcCHHHHH
Confidence 99999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=329.93 Aligned_cols=187 Identities=24% Similarity=0.319 Sum_probs=155.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||+||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN 96 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence 4699999999999999999999999999999999999887531 23899999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..+..+. .|||
T Consensus 97 i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSg 137 (356)
T PRK11650 97 MAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKPR-----ELSG 137 (356)
T ss_pred HHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCChh-----hCCH
Confidence 999865322110 0112346778999999988877665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|....+.|.+.+.+. .++++|+++|+..++..+||+|++|++|+++..|
T Consensus 138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 9999999999999999999999999998877666665554432 2566677788889999999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+++++.
T Consensus 218 ~~~~~~ 223 (356)
T PRK11650 218 TPVEVY 223 (356)
T ss_pred CHHHHH
Confidence 999884
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=328.24 Aligned_cols=200 Identities=25% Similarity=0.365 Sum_probs=164.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||.||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFEN 106 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999887521 23899999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..++++. .|||
T Consensus 107 i~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSg 147 (375)
T PRK09452 107 VAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKPH-----QLSG 147 (375)
T ss_pred HHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 999764322110 0112346778999999988877664 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++||||||++++|......|++.+... .++++|++||+..++..++|+|++|++|+++..|
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999988877766666655432 2566677789999999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++ |..|....+++|+.
T Consensus 228 ~~~~i--------~~~p~~~~~a~~~g 246 (375)
T PRK09452 228 TPREI--------YEEPKNLFVARFIG 246 (375)
T ss_pred CHHHH--------HhCcccHHHHHhcC
Confidence 99988 34666666677664
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=303.30 Aligned_cols=175 Identities=25% Similarity=0.349 Sum_probs=141.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----------------------eeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----------------------RCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----------------------~~~v~q~d~~~~~ 227 (521)
..+|++|||+|++||+++|+|||||||||||++|+|+..|+.+. .+||+|+..+++.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 57999999999999999999999999999999999999886321 2899999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccc-ccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCAD-TMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d-t~vg~~ 306 (521)
+||.||+.+.....+.... ......+.+++.+||.+..+ .++.
T Consensus 98 ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~-- 141 (226)
T COG1136 98 LTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKPS-- 141 (226)
T ss_pred CCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCch--
Confidence 9999999987665443210 11234567899999987665 5554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++||.||||.++|. .+++.|+++.++. +++++++||+ +.+..+|||++.|.
T Consensus 142 ---eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~i~l~ 216 (226)
T COG1136 142 ---ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRVIELK 216 (226)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEEEEEe
Confidence 5999999999999999999999999999997655 4566666655443 5555666676 46778999999999
Q ss_pred CCEE
Q 044321 383 NGHI 386 (521)
Q Consensus 383 ~G~i 386 (521)
+|++
T Consensus 217 dG~~ 220 (226)
T COG1136 217 DGKI 220 (226)
T ss_pred CCee
Confidence 9994
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=318.98 Aligned_cols=188 Identities=26% Similarity=0.326 Sum_probs=159.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++.|+.+ ..+|++|+..+++.+||+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e 99 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHH
Confidence 4699999999999999999999999999999999999887632 2389999988889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|.+...+... .+....++.+++.++|.+..++.++ +||
T Consensus 100 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (306)
T PRK13537 100 NLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG-----ELS 140 (306)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----hCC
Confidence 9998655433210 0111245678899999988888775 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.++||+|++|++|++++.|
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999998888777777654 3567777889999999999999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++..
T Consensus 221 ~~~~l~~ 227 (306)
T PRK13537 221 APHALIE 227 (306)
T ss_pred CHHHHHh
Confidence 9998864
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=348.36 Aligned_cols=238 Identities=26% Similarity=0.349 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+...+|+.++++.++|.-. +..-...| ..+|+|+|++|.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~-------~~~~~~~~~~~g~I~~~nvsf~y~~------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEG-------DKTLIHLPKLQGEIEFENVSFRYGP------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCccccc-------ccccccccccCceEEEEEEEEEeCC-------------------------
Confidence 78889999999999999988421 11012233 348999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....+|+|+|++|+|||.+||+|+||||||||+|+|+|++.|..+ ..+||+|++
T Consensus 484 -------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~ 556 (709)
T COG2274 484 -------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556 (709)
T ss_pred -------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc
Confidence 112699999999999999999999999999999999999998642 128899976
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
. ++..|++||+.++ .|+.+.+..+.++...+ ..+.+. .++..++|.
T Consensus 557 ~-Lf~gSI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag-----~~~fI~---~lP~gy~t~ 602 (709)
T COG2274 557 F-LFSGSIRENIALG-------------------------NPEATDEEIIEAAQLAG-----AHEFIE---NLPMGYDTP 602 (709)
T ss_pred h-hhcCcHHHHHhcC-------------------------CCCCCHHHHHHHHHHhC-----cHHHHH---hcccccccc
Confidence 5 5578999999986 24444555555555443 334443 489999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+|+ ++.+||||||||++|||||+.+|+||+||||||++|.+..+.+.+.+.+. ++|+|+++|+ ..+.+.||+|+|
T Consensus 603 v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHR--l~ti~~adrIiV 679 (709)
T COG2274 603 VGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR--LSTIRSADRIIV 679 (709)
T ss_pred ccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEcc--chHhhhccEEEE
Confidence 996 67789999999999999999999999999999998887776666655544 3677666655 357889999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+|+.+|+++++++
T Consensus 680 l~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 680 LDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccCCceeccCCHHHHHH
Confidence 99999999999999975
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=338.81 Aligned_cols=237 Identities=22% Similarity=0.328 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC---ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP---TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.++...+.+|+++.+|..|. ++..|...| +..|+|+|++|.|..
T Consensus 431 lmkgvGAs~rvFel~dr~P~---------i~~~G~~~p~~~~G~IeF~~VsFaYP~------------------------ 477 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPR---------IPLTGTLAPDHLQGVIEFEDVSFAYPT------------------------ 477 (716)
T ss_pred HHHhcchHHHHHHHhccCCC---------CCCCCccccccccceEEEEEeeeecCC------------------------
Confidence 56667788999999998885 233366555 358999999999732
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
..+..||+|+||+|+|||+|||+||||+||||+.++|-.+++|+.+ ..++|.|+
T Consensus 478 -------Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QE 550 (716)
T KOG0058|consen 478 -------RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQE 550 (716)
T ss_pred -------CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecc
Confidence 2345799999999999999999999999999999999999999742 12889999
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+++| .-||+|||.|+.. ..+.+.++.++..+ ...+++. ++++.+||
T Consensus 551 PvLF-s~sI~eNI~YG~~-------------------------~~t~e~i~~AAk~A-----Nah~FI~---~~p~gY~T 596 (716)
T KOG0058|consen 551 PVLF-SGSIRENIAYGLD-------------------------NATDEEIEAAAKMA-----NAHEFIT---NFPDGYNT 596 (716)
T ss_pred ceee-cccHHHHHhcCCC-------------------------CCCHHHHHHHHHHh-----ChHHHHH---hCcccccc
Confidence 8876 5799999999743 12223333333222 1344543 59999999
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
.||+ .+..||||||||++|||||+++|.||||||.||++|.+.-..+++.+.+. +.|++++. |. -.+.+.+|+|+
T Consensus 597 ~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA-HR-LSTV~~Ad~Iv 673 (716)
T KOG0058|consen 597 VVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA-HR-LSTVRHADQIV 673 (716)
T ss_pred ccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe-hh-hhHhhhccEEE
Confidence 9997 44579999999999999999999999999999998887777776666432 45666654 44 46778999999
Q ss_pred EEeCCEEEEecCHhHHHH
Q 044321 380 LISNGHIVYQGPREYVLE 397 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~~ 397 (521)
++++|++++.|+++++++
T Consensus 674 vi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 674 VIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEcCCeEEecccHHHHhh
Confidence 999999999999999864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=321.62 Aligned_cols=204 Identities=28% Similarity=0.378 Sum_probs=161.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence 4699999999999999999999999999999999999887521 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+......... .. ..+....++++++.+||.+..++++. .|||
T Consensus 95 i~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 139 (353)
T PRK10851 95 IAFGLTVLPRRER-------------------PN-----------AAAIKAKVTQLLEMVQLAHLADRYPA-----QLSG 139 (353)
T ss_pred HHhhhhhcccccC-------------------CC-----------HHHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 9987543110000 00 00122356778999999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++..+||+|++|++|++++.|
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999988887766666655433 2556777789999999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++. ..|....++.|+.
T Consensus 220 ~~~~i~--------~~p~~~~~~~~~g 238 (353)
T PRK10851 220 TPDQVW--------REPATRFVLEFMG 238 (353)
T ss_pred CHHHHH--------hCccchHHHHhcC
Confidence 999884 3455555555543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=323.85 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=161.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+.+|+.+ ..+|++|+..+|+++||.||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence 4699999999999999999999999999999999999887531 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....+.++++.+||.+..++.+. +|||
T Consensus 112 i~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSg 152 (377)
T PRK11607 112 IAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKPH-----QLSG 152 (377)
T ss_pred HHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 999765332110 0122346778999999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||+|||||+.+|++||||||++++|....+.|++ +.++. ++++|++||+..++..++|+|++|++|+++..
T Consensus 153 Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999999999999999988877766654 43333 45666678889999999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|+++++. ..|....++.|+.
T Consensus 232 g~~~~~~--------~~p~~~~~a~~~g 251 (377)
T PRK11607 232 GEPEEIY--------EHPTTRYSAEFIG 251 (377)
T ss_pred cCHHHHH--------hCCccHHHHHhcC
Confidence 9999884 3455555566553
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=323.00 Aligned_cols=187 Identities=25% Similarity=0.356 Sum_probs=154.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999877521 23789999889999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+....+... .+....++++++.+||.+..++.++ .|||
T Consensus 96 i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSg 136 (369)
T PRK11000 96 MSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKPK-----ALSG 136 (369)
T ss_pred HHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 998754322110 0112245678999999887777665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|....+.+.+++++. .++++|+++|+..++..+||+|++|++|+++..|
T Consensus 137 Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999998887776665555432 2556677788888999999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+++++.
T Consensus 217 ~~~~i~ 222 (369)
T PRK11000 217 KPLELY 222 (369)
T ss_pred CHHHHH
Confidence 999884
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=304.67 Aligned_cols=205 Identities=26% Similarity=0.356 Sum_probs=163.1
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV 223 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~ 223 (521)
+.++.+..++++||||+|++||+++|+||||||||||+|+|+|.++|+.+ +.+-.+|...
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 45667888999999999999999999999999999999999999999732 1145688888
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
.|++|||.||+..+...+.. .. ..+ + .+.. ..+..+..+.+..+|+.+||.+.+|+..
T Consensus 90 lF~~lTVlENv~va~~~~~~---~~--~~l-------~-~~~~---------~~~e~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLG---LS--GLL-------G-RPRA---------RKEEREARERARELLEFVGLGELADRPA 147 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhh---hh--hhh-------c-cccc---------hhhHHHHHHHHHHHHHHcCCchhhcchh
Confidence 99999999999988654321 00 000 0 0000 0011223446678999999999999998
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
|+ ||+||||||.|||||+.+|++|+||||.+++... +.+.|+++.+ .++++|+++.|++..++.+||+|+
T Consensus 148 ~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~ 221 (250)
T COG0411 148 GN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIV 221 (250)
T ss_pred hc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEE
Confidence 86 9999999999999999999999999999976554 4445555433 245788888999999999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
||+.|+++++|+|+++.
T Consensus 222 Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 222 VLNYGEVIAEGTPEEVR 238 (250)
T ss_pred eccCCcCcccCCHHHHh
Confidence 99999999999999985
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=301.48 Aligned_cols=187 Identities=27% Similarity=0.339 Sum_probs=150.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 4699999999999999999999999999999999999876421 126889988888889
Q ss_pred CHHHHHHHHHHhcc-CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 229 TVRETLAFSARCQG-VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~-~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
||.||+.+...... ... .+....+..+++.+||.+..++.++
T Consensus 93 tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 135 (235)
T cd03261 93 TVFENVAFPLREHTRLSE----------------------------------EEIREIVLEKLEAVGLRGAEDLYPA--- 135 (235)
T ss_pred cHHHHHHHHHhhccCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999988643210 000 0011235668899999877776665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++..+||+|++|++|
T Consensus 136 --~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G 213 (235)
T cd03261 136 --ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213 (235)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999998887776666665443 2456667778888899999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 214 ~i~~~g~~~~~~ 225 (235)
T cd03261 214 KIVAEGTPEELR 225 (235)
T ss_pred eEEEecCHHHHc
Confidence 999999988763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=321.34 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=158.9
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVH 224 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~ 224 (521)
++.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+..+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 3456799999999999999999999999999999999999987521 24899999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++++||+||+.|.....+... .+....+.++++.+||.+..+++++
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p~ 128 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYPD 128 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCChh
Confidence 999999999999765433211 0112346778999999887777665
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++... .+.+||+++|+..++..+||+|++|
T Consensus 129 -----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl 203 (363)
T TIGR01186 129 -----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIM 203 (363)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999888877777765433 2456777789999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|+++..|+++++.
T Consensus 204 ~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 204 KAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCEEEeeCCHHHHH
Confidence 999999999999874
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=314.60 Aligned_cols=191 Identities=26% Similarity=0.349 Sum_probs=158.6
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 345799999999999999999999999999999999999887531 13789999888999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|.+...+... .+....++++++.+||.+..++.++ .
T Consensus 84 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 124 (302)
T TIGR01188 84 RENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG-----T 124 (302)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----h
Confidence 999988654432210 0011245678999999988887765 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|++|++|++++
T Consensus 125 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988777777766543 35667778889999999999999999999999
Q ss_pred ecCHhHHHHH
Q 044321 389 QGPREYVLEF 398 (521)
Q Consensus 389 ~G~~~~v~~~ 398 (521)
.|+++++..-
T Consensus 205 ~g~~~~l~~~ 214 (302)
T TIGR01188 205 EGTPEELKRR 214 (302)
T ss_pred ECCHHHHHHh
Confidence 9999987653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=297.06 Aligned_cols=191 Identities=23% Similarity=0.293 Sum_probs=154.1
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcccc
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHI 225 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~ 225 (521)
.+++..+||++|||++++||+++|+|||||||||||++|+|+.++..+ +.+||+|....|
T Consensus 11 ~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred ecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 345667899999999999999999999999999999999999887421 238999999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCcccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg 304 (521)
+.|||.|||..++...... .. .....+++.+.|= |.+..+++-|
T Consensus 91 ~~LTVeENL~~g~~~~~~~-~~----------------------------------~~~~~e~v~~lFP~Lker~~~~aG 135 (237)
T COG0410 91 PRLTVEENLLLGAYARRDK-EA----------------------------------QERDLEEVYELFPRLKERRNQRAG 135 (237)
T ss_pred hhCcHHHHHhhhhhccccc-cc----------------------------------ccccHHHHHHHChhHHHHhcCccc
Confidence 9999999999875432100 00 0000233444432 4444555555
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
. |||||||.++|||||+.+|++|+|||||.++++.+++.+.+.++++ ++.+|+.+.|+...+.+++|+.++|
T Consensus 136 ~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 T-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred C-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEE
Confidence 4 9999999999999999999999999999999998888887776655 2568888999999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
.+|+|+++|+.+++.
T Consensus 211 e~Griv~~G~~~eL~ 225 (237)
T COG0410 211 ENGRIVLSGTAAELL 225 (237)
T ss_pred eCCEEEEecCHHHHh
Confidence 999999999999885
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=316.86 Aligned_cols=189 Identities=23% Similarity=0.323 Sum_probs=158.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~ 231 (521)
.+.+|+||||+|++|++++|+||||||||||+++|+|++.|+.+ ..+|++|+..+++.+||.
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 45699999999999999999999999999999999999987531 238999998888999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|.....+... .+....++.+++.+||.+..++.++ .|
T Consensus 133 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~-----~L 173 (340)
T PRK13536 133 ENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS-----DL 173 (340)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----hC
Confidence 99987654332110 0011234568889999988888776 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.++||+|++|++|++++.
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999988888777776554 356777788999999999999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+++++..
T Consensus 254 g~~~~l~~ 261 (340)
T PRK13536 254 GRPHALID 261 (340)
T ss_pred cCHHHHHh
Confidence 99998864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=302.07 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=159.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc-cccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD-VHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d-~~~~~lT 229 (521)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|..+ ..+||+|++ ..+..-|
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 5799999999999999999999999999999999999988631 137888885 3567889
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|.+.++|+....++.. +++..+++++|+.+||.+.++..+.
T Consensus 97 V~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p~----- 137 (235)
T COG1122 97 VEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRPPF----- 137 (235)
T ss_pred HHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCCcc-----
Confidence 9999999987665431 1234567889999999998876654
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||.+|+.+|++|+|||||+++|....+.+.+++.++ ++.++|+++|+.+.+..+||++++|++|++
T Consensus 138 ~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 138 NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE
Confidence 59999999999999999999999999999998887776666666544 356777788999999999999999999999
Q ss_pred EEecCHhHHHH
Q 044321 387 VYQGPREYVLE 397 (521)
Q Consensus 387 v~~G~~~~v~~ 397 (521)
+++|++.++++
T Consensus 218 ~~~g~p~~i~~ 228 (235)
T COG1122 218 LADGDPAEIFN 228 (235)
T ss_pred eecCCHHHHhh
Confidence 99999887754
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=294.18 Aligned_cols=184 Identities=27% Similarity=0.304 Sum_probs=143.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------------------eeeecCCc--cccCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------------------RCDISQHD--VHIGEMT 229 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------------------~~~v~q~d--~~~~~lT 229 (521)
++|+||||+|.+||+++|+|+||||||||.++|+|+..|+.+. .-+|+|++ .+.|..|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 6999999999999999999999999999999999998876321 13566664 3456677
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-ccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~ 308 (521)
|++.|.-+.+..+.. +.++.+.++|+.+||+.. ++ +++
T Consensus 101 v~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l~-----R~P 139 (252)
T COG1124 101 VGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFLD-----RRP 139 (252)
T ss_pred HHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHHh-----cCc
Confidence 777665544332221 112236778999999764 34 345
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..|||||+|||+|||||+.+|++||+|||||++|. ++++.|.++.++. +.++++++|+...+..+||||+||++|
T Consensus 140 ~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~~G 218 (252)
T COG1124 140 HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNG 218 (252)
T ss_pred hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeeeCC
Confidence 67999999999999999999999999999996655 5566666655543 455666789999999999999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++++.++.+++..
T Consensus 219 ~ivE~~~~~~l~~ 231 (252)
T COG1124 219 QIVEIGPTEELLS 231 (252)
T ss_pred eEEEeechhhhhc
Confidence 9999999999853
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=295.82 Aligned_cols=186 Identities=29% Similarity=0.334 Sum_probs=151.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH
Confidence 4699999999999999999999999999999999999876521 1368899888888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++.+++.+||.+..++.++ .||
T Consensus 93 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 133 (220)
T cd03265 93 NLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK-----TYS 133 (220)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----hCC
Confidence 9988643322100 0011245678999999877777665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.+++..+||++++|++|++++.
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999888777776665442 255677778888899999999999999999999
Q ss_pred cCHhHH
Q 044321 390 GPREYV 395 (521)
Q Consensus 390 G~~~~v 395 (521)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03265 214 GTPEEL 219 (220)
T ss_pred CChHHc
Confidence 987754
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=306.01 Aligned_cols=206 Identities=26% Similarity=0.335 Sum_probs=161.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCc-cccCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHD-VHIGE 227 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d-~~~~~ 227 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++ ..+..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 599999999999999999999999999999999999877521 126888875 24445
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
.||.+|+.|+....+... .+....+.++++.+||. ...++.+
T Consensus 100 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~--- 142 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEKSP--- 142 (288)
T ss_pred chHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccCCc---
Confidence 799999998754322110 01122456788999996 3555544
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.|||||||||+||++|+.+|++|||||||+++|....+.+.+++... .+.+|++++|+..++..+||+|++|++|
T Consensus 143 --~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G 220 (288)
T PRK13643 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220 (288)
T ss_pred --ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 569999999999999999999999999999998888777776665443 3566777788888899999999999999
Q ss_pred EEEEecCHhHHH---HHHHHcCCCCCCCCCHHHHH
Q 044321 385 HIVYQGPREYVL---EFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 385 ~iv~~G~~~~v~---~~f~~~g~~~p~~~~~adfl 416 (521)
++++.|+++++. ++++..|+.+|....+++.+
T Consensus 221 ~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 221 HIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999875 45667788887665554444
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=309.63 Aligned_cols=188 Identities=24% Similarity=0.335 Sum_probs=154.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence 4699999999999999999999999999999999999877521 1378999888888999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++.+++.+||.+..++.++ .||
T Consensus 97 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~-----~LS 137 (303)
T TIGR01288 97 NLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA-----LLS 137 (303)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----hCC
Confidence 9987543221100 0011234567889999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|++|++|++++.|
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999888777777666543 3566777788888999999999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++..
T Consensus 218 ~~~~~~~ 224 (303)
T TIGR01288 218 RPHALID 224 (303)
T ss_pred CHHHHHh
Confidence 9998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=287.13 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=156.5
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCcc
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDV 223 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~ 223 (521)
.|.....+|+||||+|++||++-|+||||||||||||+|.+...|+.+ ..+.|+|+..
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 344456799999999999999999999999999999999999888632 1288999999
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+++..||.||++|+.+..|... .+++.++.++|+.+||.+.++..+
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~lP 135 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARALP 135 (223)
T ss_pred ccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcCc
Confidence 9999999999999987765422 224456788999999999888665
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
. .|||||||||+||||++.+|++||.||||.++|+.....+.++..+. -+|+|++.||+...+..+--+++.|
T Consensus 136 ~-----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 136 S-----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred c-----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEE
Confidence 4 59999999999999999999999999999987776655555555443 3788888899998888888999999
Q ss_pred eCCEEEEecC
Q 044321 382 SNGHIVYQGP 391 (521)
Q Consensus 382 ~~G~iv~~G~ 391 (521)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=308.06 Aligned_cols=188 Identities=24% Similarity=0.333 Sum_probs=158.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+..+++.+||.|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999877532 2388999988889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|.+...+... .+....++.+++.+||.+..++.++ .||
T Consensus 95 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 135 (301)
T TIGR03522 95 YLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----QLS 135 (301)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----hCC
Confidence 9998765432210 0011245678999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.++++.. .+++|++++|+.+++.++||+|++|++|++++.|+
T Consensus 136 ~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999998888888777654 24677778899999999999999999999999999
Q ss_pred HhHHHH
Q 044321 392 REYVLE 397 (521)
Q Consensus 392 ~~~v~~ 397 (521)
.+++..
T Consensus 216 ~~~~~~ 221 (301)
T TIGR03522 216 LDELSA 221 (301)
T ss_pred HHHHHH
Confidence 998854
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=305.46 Aligned_cols=200 Identities=24% Similarity=0.312 Sum_probs=156.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|++. .++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 3699999999999999999999999999999999999877521 1278888752 44568
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC--ccccccccCc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD--VCADTMVGDE 306 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~ 306 (521)
||+||+.|.....+... .+....++++++.+||. +..++.+
T Consensus 100 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~--- 142 (287)
T PRK13637 100 TIEKDIAFGPINLGLSE----------------------------------EEIENRVKRAMNIVGLDYEDYKDKSP--- 142 (287)
T ss_pred cHHHHHHhHHHHCCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhccCCc---
Confidence 99999988643222100 11223457789999996 5556554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++..+||+|++|++
T Consensus 143 --~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 143 --FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999998887777776666443 256777778888889999999999999
Q ss_pred CEEEEecCHhHHHH---HHHHcCCCCCCC
Q 044321 384 GHIVYQGPREYVLE---FFKFMGFECPKR 409 (521)
Q Consensus 384 G~iv~~G~~~~v~~---~f~~~g~~~p~~ 409 (521)
|++++.|+++++.+ .+...|+.+|..
T Consensus 221 G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 249 (287)
T PRK13637 221 GKCELQGTPREVFKEVETLESIGLAVPQV 249 (287)
T ss_pred CEEEEECCHHHHHhCHHHHHHcCCCCChH
Confidence 99999999998753 334557766643
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=313.58 Aligned_cols=187 Identities=22% Similarity=0.297 Sum_probs=154.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 4699999999999999999999999999999999999877521 137889988888899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....+..+++.+||.+..++.+.
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 139 (343)
T PRK11153 98 TVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYPA---- 139 (343)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh----
Confidence 99999998754322110 0011245678999999887776664
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++++. .+++||+++|+..++.++||+|++|++|+
T Consensus 140 -~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~ 218 (343)
T PRK11153 140 -QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218 (343)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999998887777766665543 25667777888889999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+++++.
T Consensus 219 i~~~g~~~~~~ 229 (343)
T PRK11153 219 LVEQGTVSEVF 229 (343)
T ss_pred EEEEcCHHHHH
Confidence 99999998874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=297.07 Aligned_cols=190 Identities=30% Similarity=0.395 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++.+++.+||.||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence 4699999999999999999999999999999999999876421 23788998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|.....+.... ... .+....++.+++.+||.+..++.++ .|||
T Consensus 95 l~~~~~~~~~~~~-------------------~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (239)
T cd03296 95 VAFGLRVKPRSER-------------------PPE-----------AEIRAKVHELLKLVQLDWLADRYPA-----QLSG 139 (239)
T ss_pred Hhhhhhhcccccc-------------------CCH-----------HHHHHHHHHHHHHcCChhhhhcChh-----hCCH
Confidence 9886432111000 000 0011234668899999877776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+|++|++|++++.|
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999999999999999999999999999888777777666543 2456666778888889999999999999999999
Q ss_pred CHhHH
Q 044321 391 PREYV 395 (521)
Q Consensus 391 ~~~~v 395 (521)
+++++
T Consensus 220 ~~~~~ 224 (239)
T cd03296 220 TPDEV 224 (239)
T ss_pred CHHHH
Confidence 98876
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=307.23 Aligned_cols=203 Identities=23% Similarity=0.302 Sum_probs=157.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------------
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------------------- 213 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------------------- 213 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 599999999999999999999999999999999999876421
Q ss_pred -----ceeeecCCc-cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHH
Q 044321 214 -----NRCDISQHD-VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITD 287 (521)
Q Consensus 214 -----~~~~v~q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (521)
..+|++|++ ..++..||.||+.|+....+... .+....+.
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~ 146 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAKKRAA 146 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHHHHHH
Confidence 026888874 34556799999988654322110 01123456
Q ss_pred HHHHHcCCC-ccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEE
Q 044321 288 YILKILGLD-VCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISL 364 (521)
Q Consensus 288 ~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i 364 (521)
.+++.+||. +..++.+ ..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+++||++
T Consensus 147 ~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 221 (305)
T PRK13651 147 KYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILV 221 (305)
T ss_pred HHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 789999996 5666555 459999999999999999999999999999998887776666665443 35667777
Q ss_pred ecChhHHHhhcCeEEEEeCCEEEEecCHhHHH---HHHHHcCCCCCCCCCHH
Q 044321 365 LQPAPETYDLFDDIILISNGHIVYQGPREYVL---EFFKFMGFECPKRKGVA 413 (521)
Q Consensus 365 ~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~---~~f~~~g~~~p~~~~~a 413 (521)
+|+.+.+.++||+|++|++|++++.|+++++. +.+...|+..|.....+
T Consensus 222 tHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 273 (305)
T PRK13651 222 THDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPKLLNFV 273 (305)
T ss_pred eeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCChHHHHH
Confidence 88888999999999999999999999999875 33445566655443333
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=292.38 Aligned_cols=195 Identities=22% Similarity=0.293 Sum_probs=164.2
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
.+.+++++++++|||.|++||+++|+|||||||||.+.++.|+..|+.+ +.+|++|+...
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 4455677899999999999999999999999999999999999988632 23899999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|..+||.||+........... . ..+.+...+.+|+.|+|.++++.+-.
T Consensus 91 Fr~LtV~dNi~~vlE~~~~d~--------~------------------------~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREKDL--------K------------------------KAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred hhcCcHHHHHHHHHhhhhcch--------h------------------------HHHHHHHHHHHHHHhchHHHhcCccc
Confidence 999999999987654322100 0 01122346789999999999987654
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.||||||+|+.|||||+.+|++++||||+++.|+..+..+++++..+ .+.-|+++-|+..++..+|||.++++
T Consensus 139 -----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 139 -----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred -----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEe
Confidence 59999999999999999999999999999999998888888777654 35667778899999999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+++++|+++++.
T Consensus 214 ~G~vla~G~p~ei~ 227 (243)
T COG1137 214 DGKVLAEGSPEEIV 227 (243)
T ss_pred cCeEEecCCHHHHh
Confidence 99999999999985
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=293.37 Aligned_cols=181 Identities=29% Similarity=0.402 Sum_probs=146.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+|++||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 92 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAEN 92 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHH
Confidence 4699999999999999999999999999999999999876521 13788998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... ......+..+++.+||.+..++.+. .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 133 (213)
T cd03259 93 IAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYPH-----ELSG 133 (213)
T ss_pred HHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcChh-----hCCH
Confidence 987643211100 0011234568889999877776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.++||+|++|++|++++.|
T Consensus 134 G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999888777776666543 3566777788888899999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=305.01 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=156.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCc-cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHD-VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d-~~~~ 226 (521)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+. ..+.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 3599999999999999999999999999999999999877521 137888874 2344
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
..||.||+.|+....+... .+....++.+++.+||. ...++.+
T Consensus 100 ~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARSP-- 143 (290)
T ss_pred hhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCCc--
Confidence 6799999988643322110 01122456789999996 4566555
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+.|||||||||+||+||+.+|++|||||||+++|......+.+++... .+++||+++|+..++..+||+|++|+
T Consensus 144 ---~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 144 ---FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220 (290)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 459999999999999999999999999999998887777766665443 25667777888899999999999999
Q ss_pred CCEEEEecCHhHHH---HHHHHcCCCCCCC
Q 044321 383 NGHIVYQGPREYVL---EFFKFMGFECPKR 409 (521)
Q Consensus 383 ~G~iv~~G~~~~v~---~~f~~~g~~~p~~ 409 (521)
+|++++.|+++++. ..+...++.+|..
T Consensus 221 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 221 KGTVFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred CCEEEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 99999999998874 3344556665544
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=292.81 Aligned_cols=186 Identities=27% Similarity=0.376 Sum_probs=151.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+|+++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 4699999999999999999999999999999999999877521 1378889887888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++++++.+||.+..++.++ .||
T Consensus 95 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 135 (220)
T cd03263 95 HLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR-----TLS 135 (220)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----hCC
Confidence 9987644322110 0011234668889999877777665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ...++++++|+.+.+.++||++++|++|++++.|+
T Consensus 136 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 215 (220)
T cd03263 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999888777777766543 23667777888888889999999999999999998
Q ss_pred HhHH
Q 044321 392 REYV 395 (521)
Q Consensus 392 ~~~v 395 (521)
++++
T Consensus 216 ~~~~ 219 (220)
T cd03263 216 PQEL 219 (220)
T ss_pred HHHc
Confidence 8764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=295.78 Aligned_cols=196 Identities=25% Similarity=0.341 Sum_probs=151.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+||
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 4699999999999999999999999999999999999876421 13688998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.+.......... ... ..... ..+....+.++++.+||.+..++.++ .
T Consensus 93 ~~~l~~~~~~~~~~~~---~~~----------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (236)
T cd03219 93 LENVMVAAQARTGSGL---LLA----------RARRE-----------EREARERAEELLERVGLADLADRPAG-----E 143 (236)
T ss_pred HHHHHHHHhhcccccc---ccc----------ccccc-----------HHHHHHHHHHHHHHcCccchhhCChh-----h
Confidence 9999886532210000 000 00000 00112245678899999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+..++..+||+|++|++|++++
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999998887776666665433 34566777788888999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+++++
T Consensus 224 ~~~~~~~ 230 (236)
T cd03219 224 EGTPDEV 230 (236)
T ss_pred ecCHHHh
Confidence 9998876
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=303.49 Aligned_cols=203 Identities=25% Similarity=0.312 Sum_probs=173.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----------------------eeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----------------------RCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----------------------~~~v~q~d~~~ 225 (521)
+....++|+||+|+.||++.|+|-||||||||+++|+++++|+.+. .+.|+|...++
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 4456799999999999999999999999999999999999987421 17899999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
|+.||.||..|+..++|++.. +.+.++.++|+.+||....+.++.
T Consensus 119 PhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~- 163 (386)
T COG4175 119 PHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYPN- 163 (386)
T ss_pred cchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCcc-
Confidence 999999999999988887431 223456789999999999887765
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|||||||||.|||||+.+|+|||||||+|++|+-|...+++ +-.++++ +|+.++|+.+|++++.|+|.+|
T Consensus 164 ----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K-TIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 164 ----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-TIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred ----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC-eEEEEecCHHHHHhccceEEEe
Confidence 599999999999999999999999999999999877665554 4333444 4555679999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
.+|+||..|++++++ ..|.+..+++|+..+
T Consensus 239 kdG~ivQ~Gtp~eIl--------~~PAndYV~~Fv~~v 268 (386)
T COG4175 239 KDGEIVQVGTPEEIL--------LNPANDYVRDFVRNV 268 (386)
T ss_pred cCCeEEEeCCHHHHH--------cCccHHHHHHHHhcC
Confidence 999999999999995 578888899998765
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=293.99 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=151.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 4699999999999999999999999999999999999876421 13688998888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.+.....+... .+....++.+++.+||.+..++.+. .
T Consensus 93 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 133 (232)
T cd03218 93 EENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKAS-----S 133 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh-----h
Confidence 999987543211100 0011235678889999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|++|++++
T Consensus 134 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999888777766665443 35567777888889999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+.+++.
T Consensus 214 ~~~~~~~~ 221 (232)
T cd03218 214 EGTPEEIA 221 (232)
T ss_pred EeCHHHhh
Confidence 99988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=300.82 Aligned_cols=197 Identities=24% Similarity=0.288 Sum_probs=154.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV~ 231 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++. .++.+||.
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 599999999999999999999999999999999999887521 1278888752 45678999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|+....+... .+....+..+++.+||.+..++.+. .|
T Consensus 99 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 139 (274)
T PRK13647 99 DDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPPY-----HL 139 (274)
T ss_pred HHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCChh-----hC
Confidence 99987643211100 0112245678999999877776665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+.+.++||+|++|++|++++.
T Consensus 140 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998887777666665443 256677778888888899999999999999999
Q ss_pred cCHhHHH--HHHHHcCCCCC
Q 044321 390 GPREYVL--EFFKFMGFECP 407 (521)
Q Consensus 390 G~~~~v~--~~f~~~g~~~p 407 (521)
|+++++. +.+...|+.+|
T Consensus 220 g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 220 GDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CCHHHhcCHHHHHHcCCCCC
Confidence 9987642 34445566655
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.34 Aligned_cols=237 Identities=23% Similarity=0.273 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+..+.+.+|+.++++.+++.. .-.....+.+ ..+|+|+|+++.+.
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~~vsf~~~--------------------------- 360 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAHP------QQGEKELASNDPVTIEAEDLEILSP--------------------------- 360 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCccc------CCCccccCCCCCceEEEEeeEEecc---------------------------
Confidence 4667788899998887654310 0000001111 23699999988641
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
.++++|+|+||+|+||+.++|+||||||||||+++|+|++ |+.+ ..+||+|++.
T Consensus 361 ------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~ 433 (588)
T PRK11174 361 ------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ 433 (588)
T ss_pred ------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCc
Confidence 1236999999999999999999999999999999999999 6531 1279999875
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| +.|++|||.++. |+.+.+.+.++....+ .++.++ .|++.+||.+
T Consensus 434 LF-~~TI~eNI~~g~-------------------------~~~~~eei~~al~~a~------l~~~i~--~lp~G~dT~v 479 (588)
T PRK11174 434 LP-HGTLRDNVLLGN-------------------------PDASDEQLQQALENAW------VSEFLP--LLPQGLDTPI 479 (588)
T ss_pred CC-CcCHHHHhhcCC-------------------------CCCCHHHHHHHHHHhC------HHHHHH--hccccccccc
Confidence 54 579999999862 1122222222222111 122222 4778899999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|+. ...||||||||++|||||+.+|+||||||||+++|.+..+.+.+.+.+. +.|+|+++ |.. .....||+|++|
T Consensus 480 ge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiIt-Hrl-~~i~~aD~Iivl 556 (588)
T PRK11174 480 GDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQL-EDLAQWDQIWVM 556 (588)
T ss_pred ccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEe-cCh-HHHHhCCEEEEE
Confidence 974 5679999999999999999999999999999998887777776655543 45555555 444 556789999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++.+
T Consensus 557 ~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 557 QDGQIVQQGDYAELSQ 572 (588)
T ss_pred eCCeEeecCCHHHHHh
Confidence 9999999999998863
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=300.61 Aligned_cols=198 Identities=20% Similarity=0.272 Sum_probs=154.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc-cccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD-VHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d-~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|++ ..++.+||
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 3599999999999999999999999999999999999887532 127888876 36778899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.|+....+... .+....++++++.+||.+..+..++ .
T Consensus 100 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 140 (279)
T PRK13650 100 EDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREPA-----R 140 (279)
T ss_pred HHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc-----c
Confidence 999988643222110 0112245678999999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+.+ ..||+|++|++|+++
T Consensus 141 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~ 219 (279)
T PRK13650 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE 219 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887766666655432 256666677777777 589999999999999
Q ss_pred EecCHhHHH---HHHHHcCCCCCC
Q 044321 388 YQGPREYVL---EFFKFMGFECPK 408 (521)
Q Consensus 388 ~~G~~~~v~---~~f~~~g~~~p~ 408 (521)
..|+++++. ..++..|+.+|.
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 220 STSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred EECCHHHHHcChHHHHHcCCCCcH
Confidence 999998875 234556666554
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=292.85 Aligned_cols=186 Identities=25% Similarity=0.328 Sum_probs=151.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~lT 229 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 699999999999999999999999999999999999877521 1268888888888899
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.||+.+.....+... ......+..+++.+||.+..++.+.
T Consensus 99 ~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 139 (233)
T cd03258 99 VFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYPA----- 139 (233)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcChh-----
Confidence 9999987643221100 0011234668899999877776654
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. ++++|++++|+.+++.++||++++|++|++
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 219 (233)
T cd03258 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999988777776666543 256677777888888999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+.+++.
T Consensus 220 ~~~~~~~~~~ 229 (233)
T cd03258 220 VEEGTVEEVF 229 (233)
T ss_pred EEecCHHHHh
Confidence 9999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=289.72 Aligned_cols=181 Identities=27% Similarity=0.366 Sum_probs=145.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|++||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN 92 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHH
Confidence 3699999999999999999999999999999999999876421 13788998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... .+....++.+++.+||.+..++.++ .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 133 (213)
T cd03301 93 IAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKPK-----QLSG 133 (213)
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCChh-----hCCH
Confidence 988643221100 0011245668899999877776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++.++||+|++|++|++++.|
T Consensus 134 G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999998887766666655432 2456666778888899999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=290.76 Aligned_cols=183 Identities=26% Similarity=0.345 Sum_probs=147.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|++||+.+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 4699999999999999999999999999999999999877521 23788998888888999999988
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.....+... ......++.+++.+||.+..++.++ .||||||
T Consensus 97 ~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~ 137 (220)
T cd03293 97 GLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYPH-----QLSGGMR 137 (220)
T ss_pred HHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHH
Confidence 643322100 0011235668899999877776654 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe--CCEEEEecC
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS--NGHIVYQGP 391 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~--~G~iv~~G~ 391 (521)
|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||++++|+ +|++++.++
T Consensus 138 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 138 QRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 9999999999999999999999999888777777666443 25566667788888899999999999 799999886
Q ss_pred H
Q 044321 392 R 392 (521)
Q Consensus 392 ~ 392 (521)
.
T Consensus 218 ~ 218 (220)
T cd03293 218 V 218 (220)
T ss_pred e
Confidence 5
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=289.05 Aligned_cols=177 Identities=20% Similarity=0.284 Sum_probs=142.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 3699999999999999999999999999999999999876421 127888988888889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.+.....+... .+....+.++++.+||.+..++.++
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALPM---- 137 (216)
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh----
Confidence 99999988654321100 0011235668899999877776664
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+.+..+||++++|++|++
T Consensus 138 -~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 138 -QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 59999999999999999999999999999999888777776666543 245667778888888899999999999975
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=299.56 Aligned_cols=199 Identities=20% Similarity=0.247 Sum_probs=153.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCc-cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHD-VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d-~~~~ 226 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++ ..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 3599999999999999999999999999999999999877521 126888874 2333
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
..||.||+.|+....+... .+....+.++++.+||. +..++.+
T Consensus 100 ~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQSP-- 143 (286)
T ss_pred hhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 4699999987643221100 01122456788999996 5566554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++.++||+|++|+
T Consensus 144 ---~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~ 220 (286)
T PRK13646 144 ---FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK 220 (286)
T ss_pred ---ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999988887777766543 35677778888888999999999999
Q ss_pred CCEEEEecCHhHHHH---HHHHcCCCCCC
Q 044321 383 NGHIVYQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
+|++++.|+++++.. .....++..|.
T Consensus 221 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (286)
T PRK13646 221 EGSIVSQTSPKELFKDKKKLADWHIGLPE 249 (286)
T ss_pred CCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999988753 22334555443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=299.99 Aligned_cols=194 Identities=24% Similarity=0.290 Sum_probs=156.2
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecC
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQ 220 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q 220 (521)
+.+.++.+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|
T Consensus 30 ~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred hhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 34445667899999999999999999999999999999999999876421 2378888
Q ss_pred CccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccc
Q 044321 221 HDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCAD 300 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 300 (521)
+..+++.+||.||+.+.....+... .+....++++++.+||.+..+
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~ 155 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEH 155 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhh
Confidence 8888888999999988643321100 001123566889999988777
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCe
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~ 377 (521)
+.++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+.+++.++||+
T Consensus 156 ~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 156 KYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 7665 59999999999999999999999999999998888777776665443 256677778888889999999
Q ss_pred EEEEeCCEEEEecCHhHHH
Q 044321 378 IILISNGHIVYQGPREYVL 396 (521)
Q Consensus 378 VivL~~G~iv~~G~~~~v~ 396 (521)
+++|++|++++.|+++++.
T Consensus 231 v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 231 IAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=311.91 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=156.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~ 225 (521)
+...+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..++
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 445699999999999999999999999999999999999877521 237899998889
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+||.||+.|.....+... .+....+.++++.+||.+..++.+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~~- 163 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYPD- 163 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCcc-
Confidence 99999999998754332110 0011245678999999887776654
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++..+||+|++|+
T Consensus 164 ----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~ 239 (400)
T PRK10070 164 ----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239 (400)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999988877777766443 35566777888899999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 240 ~G~i~~~g~~~~l~ 253 (400)
T PRK10070 240 NGEVVQVGTPDEIL 253 (400)
T ss_pred CCEEEecCCHHHHH
Confidence 99999999998874
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=289.71 Aligned_cols=185 Identities=24% Similarity=0.335 Sum_probs=147.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 4699999999999999999999999999999999999876521 13788998888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~~r 309 (521)
+||+.+...... .. +....+..+++.+ ++.+..++.+.
T Consensus 93 ~~~l~~~~~~~~--~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~~~----- 131 (222)
T cd03224 93 EENLLLGAYARR--RA----------------------------------KRKARLERVYELFPRLKERRKQLAG----- 131 (222)
T ss_pred HHHHHHHhhhcC--ch----------------------------------hHHHHHHHHHHHHHhhhhhhhCchh-----
Confidence 999987643211 00 0011234456666 46665665554
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|++|++|+++
T Consensus 132 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 59999999999999999999999999999998887777766666543 3566777788888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 212 ~~~~~~~~~ 220 (222)
T cd03224 212 LEGTAAELL 220 (222)
T ss_pred EeCCHHHHh
Confidence 999987763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=292.36 Aligned_cols=187 Identities=24% Similarity=0.306 Sum_probs=149.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------~~~~v~q~d~ 223 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 3699999999999999999999999999999999999876421 1267888877
Q ss_pred ccCCCCHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 224 HIGEMTVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
+++.+|+.||+.++... .+... .+....+..+++.+||....++.
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 141 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPK----------------------------------EEATARARELLAKVGLAGKETSY 141 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCcchhhCC
Confidence 88889999999875321 11000 01112356688899998776665
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..++.++||++++
T Consensus 142 ~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 142 PR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIF 216 (250)
T ss_pred hh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 54 59999999999999999999999999999998887777776665432 245666678888889999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 217 MDQGRIVEQGPAKALF 232 (250)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=327.09 Aligned_cols=237 Identities=25% Similarity=0.321 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.+....+.+|+.++++..++ +.+... ....+..+|+|+|++|.++
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~--~~~~~~~~I~f~~vsf~y~---------------------------- 339 (567)
T COG1132 295 LQRASAAAERLFELLDEEPE-----VEDPPD--PLKDTIGSIEFENVSFSYP---------------------------- 339 (567)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCCC--CCCCCCCeEEEEEEEEEcC----------------------------
Confidence 56677888999999987654 111111 0223445799999999973
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+++++|+||||+|+|||.+||+||||||||||+++|+|+++|..+ ..++|+|+..+
T Consensus 340 -----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 340 -----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred -----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 134799999999999999999999999999999999999998531 12789987666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|. .||++|+.++.. +.+.+...+++.... ..+.+. .+++.+||.||
T Consensus 415 F~-~TI~~NI~~g~~-------------------------~at~eei~~a~k~a~-----~~d~I~---~lp~g~dt~vg 460 (567)
T COG1132 415 FS-GTIRENIALGRP-------------------------DATDEEIEEALKLAN-----AHEFIA---NLPDGYDTIVG 460 (567)
T ss_pred ec-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC-----hHHHHH---hCcccccceec
Confidence 55 999999998732 222233333332221 223332 35788999999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--cCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--LEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ .+..||||||||++|||||+.+|++|+|||||+++|.+....+.+.+.. .++|++++ .|....+ ..||+|++|+
T Consensus 461 e-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI-aHRlsti-~~aD~IiVl~ 537 (567)
T COG1132 461 E-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII-AHRLSTI-KNADRIIVLD 537 (567)
T ss_pred C-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE-eccHhHH-HhCCEEEEEE
Confidence 4 5667999999999999999999999999999998877766666655532 24577774 4554444 4599999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|++++++.
T Consensus 538 ~G~i~e~G~h~eLl~ 552 (567)
T COG1132 538 NGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999864
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=291.96 Aligned_cols=187 Identities=25% Similarity=0.340 Sum_probs=149.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++.+||.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 4699999999999999999999999999999999999876521 127889988888889999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc--cccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV--CADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~~~r 309 (521)
||+.+.....+... .+....+.++++.+||.. ..++.+ .
T Consensus 94 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~~-----~ 134 (242)
T cd03295 94 ENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRYP-----H 134 (242)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcCh-----h
Confidence 99987643221100 001123466888999985 555544 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++.++||+|++|++|++
T Consensus 135 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i 214 (242)
T cd03295 135 ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 69999999999999999999999999999998887777666665443 256677777888888999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (242)
T cd03295 215 VQVGTPDEIL 224 (242)
T ss_pred EEecCHHHHH
Confidence 9999988763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=290.90 Aligned_cols=187 Identities=20% Similarity=0.309 Sum_probs=150.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~lT 229 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 4699999999999999999999999999999999999876421 1378888887888899
Q ss_pred HHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|.+|+.|... ..+... .+....+.++++.+||....+..+.
T Consensus 94 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~---- 135 (240)
T PRK09493 94 ALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYPS---- 135 (240)
T ss_pred HHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcChh----
Confidence 9999987532 111100 0011235678889999877676554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .++++|+++|+.+++..+||++++|++|++
T Consensus 136 -~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 136 -ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214 (240)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999998887777776666443 355666777888889899999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+.+++.
T Consensus 215 ~~~g~~~~~~ 224 (240)
T PRK09493 215 AEDGDPQVLI 224 (240)
T ss_pred EeeCCHHHHh
Confidence 9999988764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=312.21 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=152.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
++.+|+||||+|++||+++|+||||||||||||+|+|+++|..+ ..+|++|+...++.+||
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 34799999999999999999999999999999999999887521 13789998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.++...... .. . .. ..+....++++++.+||.+..++.+. .
T Consensus 95 ~e~v~~~~~~~~~--~~---------------~-~~------------~~~~~~~v~~~le~vgl~~~~~~~~~-----~ 139 (402)
T PRK09536 95 RQVVEMGRTPHRS--RF---------------D-TW------------TETDRAAVERAMERTGVAQFADRPVT-----S 139 (402)
T ss_pred HHHHHhccchhcc--cc---------------c-CC------------CHHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 9999886321100 00 0 00 00112356778999999888877664 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+|||||+++|++|||||||+++|......+.++++++ .+++|++++|+.+++.++||++++|++|++++
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998886655555554433 35567777899999999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|++++++
T Consensus 220 ~G~~~ev~ 227 (402)
T PRK09536 220 AGPPADVL 227 (402)
T ss_pred ecCHHHHh
Confidence 99999753
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=291.82 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=147.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+ ..+|++|+...
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 35999999999999999999999999999999999998764 21 12678887777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ +|+.||+.+.....+.... .+....+..+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhh
Confidence 77 9999999876432211000 00112356688899997 5555
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+.+ ..|||||||||+||+||+.+|++|||||||+++|......+.+++... ...++|+++|+..++.++||+|+
T Consensus 140 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 140 DSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEE
Confidence 544 469999999999999999999999999999999887777776666543 23566777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 215 ~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 215 FFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=290.39 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=147.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC-----CCCCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL-----DSSLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l-----~~~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++ +|..+ ..+|++|+..+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 46999999999999999999999999999999999998 65421 12678888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+ .+||+||+.+.....+.... .+....+.++++.+||.+..+..+.
T Consensus 93 ~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 138 (227)
T cd03260 93 F-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDRLH 138 (227)
T ss_pred c-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhccCC
Confidence 6 78999999876432211000 0011235668899999876655430
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. +.++||+++|+.+.+.++||++++|++
T Consensus 139 ---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 139 ---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeC
Confidence 3569999999999999999999999999999999888777777766543 226677778888889999999999999
Q ss_pred CEEEEecCHhH
Q 044321 384 GHIVYQGPREY 394 (521)
Q Consensus 384 G~iv~~G~~~~ 394 (521)
|++++.|++++
T Consensus 216 G~i~~~g~~~~ 226 (227)
T cd03260 216 GRLVEFGPTEQ 226 (227)
T ss_pred CEEEEecCccc
Confidence 99999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=287.53 Aligned_cols=180 Identities=30% Similarity=0.443 Sum_probs=146.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
++|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 699999999999999999999999999999999999877531 13688998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... .+....++++++.+||.+..++.++ .|||
T Consensus 99 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (218)
T cd03266 99 LEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRVG-----GFST 139 (218)
T ss_pred HHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhhh-----hcCH
Confidence 987543221100 0112245678899999887776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..++..+||++++|++|++++.|
T Consensus 140 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999888777776666543 3556677778888899999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=291.03 Aligned_cols=195 Identities=26% Similarity=0.309 Sum_probs=149.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 4699999999999999999999999999999999999876421 136888888888889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.+....... . ...+ .+.. .......+..+++.+||.+..++.++
T Consensus 94 tv~~~l~~~~~~~~~-~----~~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (241)
T cd03256 94 SVLENVLSGRLGRRS-T----WRSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQRAD---- 143 (241)
T ss_pred cHHHHHHhhhcccch-h----hhhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCCcc----
Confidence 999999875321100 0 0000 0000 00011235668899999876666554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.+++..+||++++|++|+
T Consensus 144 -~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999998887777666665443 25567777888888999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+++++.
T Consensus 223 i~~~~~~~~~~ 233 (241)
T cd03256 223 IVFDGPPAELT 233 (241)
T ss_pred EEeecCHHHhh
Confidence 99999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=285.61 Aligned_cols=181 Identities=24% Similarity=0.293 Sum_probs=146.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+|+.||+.
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence 4699999999999999999999999999999999999876521 1368899888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.....+... .+....++++++.+||.+..++.+. .|||||
T Consensus 93 ~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (210)
T cd03269 93 YLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRVE-----ELSKGN 133 (210)
T ss_pred HHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHH
Confidence 7643322100 0011235668889999877776654 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+..++.++||++++|++|++++.|
T Consensus 134 ~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 134 QQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998887777666665443 3456777788888888999999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=277.03 Aligned_cols=181 Identities=22% Similarity=0.313 Sum_probs=145.7
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----------------eeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----------------RCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----------------~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
.+++.|+.||+++|+|||||||||||++|+|+..|..+. ...++|++.+|.++||.+|+.++.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 478899999999999999999999999999998876321 167889999999999999999874
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.-. -... .+.++.++.++..+||..+.+..++. ||||||||
T Consensus 97 ~P~------------------------LkL~----------a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQR 137 (231)
T COG3840 97 SPG------------------------LKLN----------AEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQR 137 (231)
T ss_pred Ccc------------------------cccC----------HHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHH
Confidence 311 0000 11233567789999999999888765 99999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHH----HHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVN----SLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREY 394 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~----~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~ 394 (521)
|++||+|+++-+||+||||++++|+.... .+.++..+.+.|++++ +|+.+++..++|+++++++|+|.++|+.++
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV-TH~~~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV-THHPEDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence 99999999999999999999977665544 4455544445565555 555678999999999999999999999887
Q ss_pred HH
Q 044321 395 VL 396 (521)
Q Consensus 395 v~ 396 (521)
++
T Consensus 217 ~~ 218 (231)
T COG3840 217 LL 218 (231)
T ss_pred Hh
Confidence 74
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=303.21 Aligned_cols=190 Identities=22% Similarity=0.224 Sum_probs=149.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~ 225 (521)
...+|+||||+|++||+++|+|+||||||||+++|+|++.|+.+ ..+||+|+. .++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 35799999999999999999999999999999999999877421 137888886 477
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-cccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 304 (521)
+.+||.+++.+........ ++ ..+....+.++|+.+||. ...++++
T Consensus 113 p~~tv~~~i~~~l~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~~~~~~~p- 159 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLPNLINRYP- 159 (331)
T ss_pred CCCCHHHHHHHHHHHhccC--------CC------------------------HHHHHHHHHHHHHHcCCChHHhcCCc-
Confidence 8899999998864322100 00 001123456789999994 3455554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
..|||||||||+||+||+.+|++||+||||+++|......+.+++.++ .++++++++|+...+.++||+|++|
T Consensus 160 ----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 160 ----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 569999999999999999999999999999988776665555544332 2567777889999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+.+++.
T Consensus 236 ~~G~ive~g~~~~i~ 250 (331)
T PRK15079 236 YLGHAVELGTYDEVY 250 (331)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=310.81 Aligned_cols=192 Identities=26% Similarity=0.290 Sum_probs=158.3
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------ceeee
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------NRCDI 218 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------~~~~v 218 (521)
++++...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345667899999999999999999999999999999999999876421 23788
Q ss_pred cCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc
Q 044321 219 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC 298 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 298 (521)
+|+..+++.+||.||+.|+....+... .+....+.++++.+||.+.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999889999999999998754332210 0112245678999999888
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhc
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~ 375 (521)
.++.++ .|||||||||+|||||+.+|+||||||||+++|......+.+++.+. .+.+|++++|+.+++.++|
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~ 232 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIG 232 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 777665 49999999999999999999999999999999888777776665433 2566777788899999999
Q ss_pred CeEEEEeCCEEEEecCHhHHH
Q 044321 376 DDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 376 D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+|++|++|+++..|+++++.
T Consensus 233 DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 233 NRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998884
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=330.45 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+..++|+.++++.+.+.. ......+ ...|+|+||+|.+..
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~---------~~~~~~~~~~~~I~~~nvsf~Y~~------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVD---------EAKTDPGKLSGAIEVDRVTFRYRP------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCcccc---------cCcCCCCCCCceEEEEEEEEEcCC-------------------------
Confidence 5677788889988887665421 0001111 236999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+.+|+|+||+|+||+.++|+||||||||||+|+|+|+++|+.+ ..+||+|++
T Consensus 464 -------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 464 -------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred -------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 123699999999999999999999999999999999999988632 128999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++||+.++.. . +.+.+.++....+ . ++.++ .+++..||.
T Consensus 537 ~lf-~gTI~eNi~~~~~---~-----------------------~~e~i~~al~~a~-----l-~~~i~--~lp~G~dt~ 581 (686)
T TIGR03797 537 RLM-SGSIFENIAGGAP---L-----------------------TLDEAWEAARMAG-----L-AEDIR--AMPMGMHTV 581 (686)
T ss_pred ccC-cccHHHHHhcCCC---C-----------------------CHHHHHHHHHHcC-----c-HHHHH--hcccccccc
Confidence 655 5799999988521 0 1111111111111 1 11111 367788999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+|+. ...||||||||++|||||+.+|++|||||||+++|....+.+.+.+...+.|+|+++ |.. +....||+|++|+
T Consensus 582 ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiIt-Hr~-~~i~~~D~Iivl~ 658 (686)
T TIGR03797 582 ISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIA-HRL-STIRNADRIYVLD 658 (686)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEe-cCh-HHHHcCCEEEEEE
Confidence 9864 578999999999999999999999999999999998888888777766666665554 544 5567799999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|+++++++
T Consensus 659 ~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 659 AGRVVQQGTYDELMA 673 (686)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998853
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=295.28 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=150.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 4699999999999999999999999999999999999876421 136888888788889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.+......... . .+....+..+++.+||.+..++.++
T Consensus 100 tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~---- 142 (269)
T PRK11831 100 NVFDNVAYPLREHTQLP---------A------------------------PLLHSTVMMKLEAVGLRGAAKLMPS---- 142 (269)
T ss_pred CHHHHHHHHHHHccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhCChh----
Confidence 99999987532110000 0 0011234567889999887777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|++|+
T Consensus 143 -~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 143 -ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCE
Confidence 59999999999999999999999999999998888777776665543 25667777888889999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+++++.
T Consensus 222 i~~~g~~~~~~ 232 (269)
T PRK11831 222 IVAHGSAQALQ 232 (269)
T ss_pred EEEeCCHHHHh
Confidence 99999988763
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=284.87 Aligned_cols=177 Identities=26% Similarity=0.367 Sum_probs=144.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+||.||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence 4699999999999999999999999999999999999876421 13688898888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+. ....++.+++.+||.+..++.++ .|||
T Consensus 93 l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 129 (208)
T cd03268 93 LRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----GFSL 129 (208)
T ss_pred HHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----hCCH
Confidence 9876432110 01134567889999877776655 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.+.+..+||++++|++|++++.|
T Consensus 130 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999888777776666543 3456666778888888999999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=288.44 Aligned_cols=187 Identities=24% Similarity=0.311 Sum_probs=148.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+|+.|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 4699999999999999999999999999999999999876521 1368888877778899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....+.++++.+||.+..++.++ .||
T Consensus 94 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 134 (236)
T TIGR03864 94 NLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR-----ELN 134 (236)
T ss_pred HHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----hCC
Confidence 9987543221100 0011234567888999877776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.+.+. .||++++|++|++++.
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLAD 213 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999998887777666655432 2456666778877776 5999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+++++..
T Consensus 214 ~~~~~~~~ 221 (236)
T TIGR03864 214 GAAAELRG 221 (236)
T ss_pred CCHHHHHH
Confidence 99887753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=300.64 Aligned_cols=204 Identities=20% Similarity=0.332 Sum_probs=155.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------------------ce
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------------------NR 215 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------------------~~ 215 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 3599999999999999999999999999999999999876421 02
Q ss_pred eeecCCcc-ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC
Q 044321 216 CDISQHDV-HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG 294 (521)
Q Consensus 216 ~~v~q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 294 (521)
+|++|++. .+...||.||+.|+....+... .+....+.++++.+|
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~g 164 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKK----------------------------------SEAKKLAKFYLNKMG 164 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 57777642 3334699999887643211100 011224567889999
Q ss_pred CC-ccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHH
Q 044321 295 LD-VCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPET 371 (521)
Q Consensus 295 L~-~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~ 371 (521)
|. ...++.+ ..|||||||||+|||||+.+|++|||||||+++|....+.+.+++... .+++||+++|+.+.+
T Consensus 165 L~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~ 239 (320)
T PRK13631 165 LDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV 239 (320)
T ss_pred CChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 96 4555444 469999999999999999999999999999998887777766665432 355677778888888
Q ss_pred HhhcCeEEEEeCCEEEEecCHhHHH---HHHHHcCCCCCCCCCHH
Q 044321 372 YDLFDDIILISNGHIVYQGPREYVL---EFFKFMGFECPKRKGVA 413 (521)
Q Consensus 372 ~~l~D~VivL~~G~iv~~G~~~~v~---~~f~~~g~~~p~~~~~a 413 (521)
..+||+|++|++|++++.|+++++. ..+...|+.+|....+.
T Consensus 240 ~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 284 (320)
T PRK13631 240 LEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQVI 284 (320)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHHHH
Confidence 8999999999999999999999875 44566777776544443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=285.10 Aligned_cols=180 Identities=31% Similarity=0.402 Sum_probs=146.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
..+|+|+||+|++| +++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||.|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 36999999999999 9999999999999999999999876421 1368899888888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++.+++.+||.+..++.++ .||
T Consensus 92 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 132 (211)
T cd03264 92 FLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG-----SLS 132 (211)
T ss_pred HHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----hCC
Confidence 9987643221100 0011235668889999877776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ..+++++++|+...+.++||++++|++|++++.|
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988887777776544 2366777788888888999999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=296.14 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=149.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcc-ccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDV-HIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~-~~~ 226 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 4699999999999999999999999999999999999887521 1267888752 344
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
.+||.||+.|+....+... .+....++++++.+||. ...++.++
T Consensus 100 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~- 144 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKSPF- 144 (287)
T ss_pred cchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCCcc-
Confidence 6899999987643211100 01122456789999996 56666654
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+.+..+||+|++|++
T Consensus 145 ----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 145 ----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999988877777776544 356777788999999999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (287)
T PRK13641 221 GKLIKHASPKEIF 233 (287)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=291.27 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=145.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| +.+ ..+|++|+...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 3699999999999999999999999999999999998764 110 12688887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ +|+.||+.|.....+... .+....+..+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 66 899999988643221100 00112345678888874 3344
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. +..|||||||||+||+||+.+|++|||||||+++|......+.+++++. .+++||+++|+..++.++||+|+
T Consensus 150 ~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 150 SP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEE
Confidence 44 4469999999999999999999999999999999888777777766543 24667777888888999999999
Q ss_pred EEeCCEEEEecCHhHH
Q 044321 380 LISNGHIVYQGPREYV 395 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v 395 (521)
+|++|++++.|+++++
T Consensus 225 ~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 225 FFLMGELIEFGQTRQI 240 (258)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998877
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=290.96 Aligned_cols=187 Identities=20% Similarity=0.252 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|+ .+ ..+|++|+...
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 35999999999999999999999999999999999998752 10 12678887666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
+ .+||+||+.|.....+.... ......+..+++.+|+. +..+
T Consensus 100 ~-~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 F-LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred c-cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHh
Confidence 6 48999999886432211000 00112345567777763 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+.+ +.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .++++|+++|+..++.++||+++
T Consensus 146 ~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~ 220 (254)
T PRK14273 146 TNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTA 220 (254)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 544 469999999999999999999999999999998888777776666544 24566677888888899999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|+++..|+++++.
T Consensus 221 ~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 221 FFLNGCIEEESSTDELF 237 (254)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998873
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=295.47 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=154.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|..+ ..+|++|+.. .+...
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 3599999999999999999999999999999999999876521 1278888753 34568
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.+.....+... .+....++.+++.+||.+..++.+.
T Consensus 99 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 140 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPTH---- 140 (283)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCcc----
Confidence 99999987643221100 0111245678899999887776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.||||||||++||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++..+||++++|++|+
T Consensus 141 -~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~ 219 (283)
T PRK13636 141 -CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219 (283)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999998887776665555433 25566777888888889999999999999
Q ss_pred EEEecCHhHHHH---HHHHcCCCCCC
Q 044321 386 IVYQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 386 iv~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
+++.|+++++.. .+...++.+|.
T Consensus 220 i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 220 VILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred EEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 999999988753 33345555543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=291.24 Aligned_cols=194 Identities=24% Similarity=0.283 Sum_probs=149.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 4699999999999999999999999999999999999876421 127888888788889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.++....... . ..+. +. ...+....+.++++.+||.+..++.+.
T Consensus 95 tv~~~l~~~~~~~~~~--~---~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 144 (243)
T TIGR02315 95 TVLENVLHGRLGYKPT--W---RSLL------GR---------------FSEEDKERALSALERVGLADKAYQRAD---- 144 (243)
T ss_pred cHHHHHhhcccccccc--h---hhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 9999997653210000 0 0000 00 000112245668899999876666554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+.+.++||++++|++|+
T Consensus 145 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 145 -QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 59999999999999999999999999999999887777766665443 25667777888888889999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9999998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=300.74 Aligned_cols=205 Identities=19% Similarity=0.181 Sum_probs=154.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---CC-----------------------ceeeecCCc--
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LK-----------------------NRCDISQHD-- 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~~-----------------------~~~~v~q~d-- 222 (521)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|. .+ ..+||+|+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 46999999999999999999999999999999999999773 10 136777775
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+.+.+|+.+++.+........ ...+....+.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~---------------------------------~~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGM---------------------------------SKAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCC---------------------------------CHHHHHHHHHHHHHHcCCCChHHH-
Confidence 4667788888776543221100 001112345678899999754322
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ +.+++.|||||+|||+||+||+.+|++||+||||+++|......+.+++.+. .++++++++|+...+..+||+|+
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~ 233 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL 233 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 2 2466789999999999999999999999999999988876666555544332 25677778899888999999999
Q ss_pred EEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 380 LISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
+|++|+|++.|+++++. ..|.+..+..++..
T Consensus 234 vm~~G~ive~g~~~~i~--------~~p~~pyt~~l~~~ 264 (330)
T PRK09473 234 VMYAGRTMEYGNARDVF--------YQPSHPYSIGLLNA 264 (330)
T ss_pred EEECCEEEEECCHHHHH--------hCCCCHHHHHHHHh
Confidence 99999999999999884 34555555555543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=286.41 Aligned_cols=176 Identities=24% Similarity=0.304 Sum_probs=140.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 4699999999999999999999999999999999999876421 13688888888888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.+.....+... ......++.+++.+||.+..++.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (218)
T cd03255 97 LTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYPS--- 139 (218)
T ss_pred CcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcChh---
Confidence 999999988653322100 0011235668899999877776654
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++. +||++++|++|
T Consensus 140 --~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G 216 (218)
T cd03255 140 --ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216 (218)
T ss_pred --hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCC
Confidence 59999999999999999999999999999999888777776666543 2456666777777776 99999999999
Q ss_pred EE
Q 044321 385 HI 386 (521)
Q Consensus 385 ~i 386 (521)
++
T Consensus 217 ~i 218 (218)
T cd03255 217 KI 218 (218)
T ss_pred cC
Confidence 74
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=292.42 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=155.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-CCCC---ce------------------------eeecCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-SSLK---NR------------------------CDISQH 221 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-~~~~---~~------------------------~~v~q~ 221 (521)
...+++||||+|++||+++|+|.|||||||+.++|+|+++ +... +. ++|+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4221 11 344443
Q ss_pred c--cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhh-hchhhhhHHHHHHHHcCCCcc
Q 044321 222 D--VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT-EGQEVSVITDYILKILGLDVC 298 (521)
Q Consensus 222 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~iL~~lgL~~~ 298 (521)
+ .+.|-+||.+.+.-..+.+ ... ...+....+.++|+.+||++-
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h---------------------------------~~~~~~~ea~~~a~~~L~~Vgi~~~ 143 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLH---------------------------------GKGLSKKEAKERAIELLELVGIPDP 143 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHh---------------------------------hcchhhHHHHHHHHHHHHHcCCCCH
Confidence 2 1233333333222211110 000 123345567789999999863
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhh
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDL 374 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l 374 (521)
.. +-+.++.+|||||||||.||.||+.+|++||.||||+++|. ++++.|+++.++ .++.++.+||+...+.++
T Consensus 144 ~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~ 220 (316)
T COG0444 144 ER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEI 220 (316)
T ss_pred HH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 21 22456778999999999999999999999999999998765 566666666553 467778889999999999
Q ss_pred cCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhhC
Q 044321 375 FDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTS 421 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~s 421 (521)
||+|+||+.|+||+.|+.+++ |..|.+..+..++..+..
T Consensus 221 aDri~VMYaG~iVE~g~~~~i--------~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 221 ADRVAVMYAGRIVEEGPVEEI--------FKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred cceEEEEECcEEEEeCCHHHH--------hcCCCChHHHHHHHhCcc
Confidence 999999999999999999988 668888888777766543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=292.55 Aligned_cols=178 Identities=22% Similarity=0.262 Sum_probs=145.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||+||+.+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHh
Confidence 3599999999999999999999999999999999999887532 13688998888888999999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.... . ....+..+++.+||.+..+..++ .||||||
T Consensus 105 ~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqk 139 (257)
T PRK11247 105 GLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWPA-----ALSGGQK 139 (257)
T ss_pred cccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 4210 0 00124567889999877666554 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
|||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+..+||+|++|++|++++.|+.+
T Consensus 140 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 140 QRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999888777776665432 3456666778888888999999999999999988754
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=329.63 Aligned_cols=245 Identities=20% Similarity=0.207 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC-CCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI-SLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.++.+..++|+.++++.+++............... ......|+|+|++|.+..
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 56778889999999887665210000000000000 111236999999998731
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
..+.+|+|+||+|++|+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 563 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIF 563 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCCh
Confidence 123599999999999999999999999999999999999988642 1279999876
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| +.|++|||.++. |+.+.+.+.++....+ .++.+. .++...||.+
T Consensus 564 lf-~gTi~eNi~l~~-------------------------~~~~~~~i~~al~~~~------l~~~i~--~lp~gl~t~i 609 (710)
T TIGR03796 564 LF-EGTVRDNLTLWD-------------------------PTIPDADLVRACKDAA------IHDVIT--SRPGGYDAEL 609 (710)
T ss_pred hh-hccHHHHhhCCC-------------------------CCCCHHHHHHHHHHhC------CHHHHH--hCcCccccee
Confidence 55 679999998742 1111122222211111 111221 3677889999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|+ .+.+||||||||++|||||+.+|++|||||||+++|....+.+.+.+...+.|+|+++ |.. .....||+|++|++
T Consensus 610 ~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~Iiit-Hrl-~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 610 AE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVA-HRL-STIRDCDEIIVLER 686 (710)
T ss_pred cc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEe-cCH-HHHHhCCEEEEEeC
Confidence 86 4578999999999999999999999999999999999888888777766556666654 544 45567999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++++
T Consensus 687 G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 687 GKVVQRGTHEELWA 700 (710)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=293.98 Aligned_cols=198 Identities=24% Similarity=0.320 Sum_probs=154.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc-cccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD-VHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d-~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+. ..++.+||
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 3599999999999999999999999999999999999887532 126888876 35677899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+.....+... .+....++++++.+||.+..++.++ .
T Consensus 100 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 140 (279)
T PRK13635 100 QDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH-----R 140 (279)
T ss_pred HHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc-----c
Confidence 999987643221100 0112245778899999887777665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++. .||+|++|++|+++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887777776665443 2566666778877776 59999999999999
Q ss_pred EecCHhHHHH---HHHHcCCCCCC
Q 044321 388 YQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 388 ~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
+.|+++++.. .+...++.+|.
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13635 220 EEGTPEEIFKSGHMLQEIGLDVPF 243 (279)
T ss_pred EECCHHHHhcCHHHHHHcCCCCCh
Confidence 9999988753 34445665543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=292.67 Aligned_cols=186 Identities=25% Similarity=0.308 Sum_probs=149.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV~ 231 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.. .+...||.
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 599999999999999999999999999999999999877531 1267888753 34568999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+|+.+.....+... .+....++.+++.+||.+..++.+. .|
T Consensus 98 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 138 (277)
T PRK13652 98 QDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVPH-----HL 138 (277)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCcc-----cC
Confidence 99987543221100 0111245678999999887777664 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+++.++||+|++|++|++++
T Consensus 139 S~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999887777766665432 25667777888889999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 219 ~g~~~~~~ 226 (277)
T PRK13652 219 YGTVEEIF 226 (277)
T ss_pred ECCHHHHh
Confidence 99999885
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=298.91 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~ 226 (521)
..+|+||||+|++||+++|+|+||||||||+++|+|++.|..+ ..+||+|+. .+.+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 5799999999999999999999999999999999999876421 126777775 4666
Q ss_pred CCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-ccccccc
Q 044321 227 EMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVG 304 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg 304 (521)
.+||.+++.+..... +.. ..+....+.++|+.+||.. .+++++
T Consensus 108 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~p- 152 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLS----------------------------------AAERREKALAMMAKVGLRPEHYDRYP- 152 (327)
T ss_pred ccCHHHHHHHHHHHccCCC----------------------------------HHHHHHHHHHHHHHCCCChHHhcCCC-
Confidence 778887776543321 000 0112234677899999963 556554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+.|||||||||+||+||+.+|++||+||||+++|......+.+++.+. .++++++++|+...+..+||+|++|
T Consensus 153 ----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 153 ----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 569999999999999999999999999999988776665555544332 3566777889999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
++|+|++.|+.+++. ..|.+..+..++..
T Consensus 229 ~~G~ive~g~~~~~~--------~~p~hpyt~~ll~~ 257 (327)
T PRK11308 229 YLGRCVEKGTKEQIF--------NNPRHPYTQALLSA 257 (327)
T ss_pred ECCEEEEECCHHHHh--------cCCCCHHHHHHHHh
Confidence 999999999999884 34544445555543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=290.69 Aligned_cols=184 Identities=25% Similarity=0.354 Sum_probs=148.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||+.+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~ 93 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF 93 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHh
Confidence 4699999999999999999999999999999999999877532 13688998888888999999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.....+... .+....+..+++.+||.+..++.++ .||||||
T Consensus 94 ~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~ 134 (255)
T PRK11248 94 GLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQR 134 (255)
T ss_pred HHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHH
Confidence 643221100 0011235678899999877666554 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe--CCEEEEecC
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS--NGHIVYQGP 391 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~--~G~iv~~G~ 391 (521)
|||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|+ +|+++..++
T Consensus 135 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 9999999999999999999999999888877777766543 35666777888889999999999998 599999887
Q ss_pred Hh
Q 044321 392 RE 393 (521)
Q Consensus 392 ~~ 393 (521)
.+
T Consensus 215 ~~ 216 (255)
T PRK11248 215 LN 216 (255)
T ss_pred CC
Confidence 54
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=289.01 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=148.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------ceeee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------------NRCDI 218 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------------~~~~v 218 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++.|+.+ ..+|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 4699999999999999999999999999999999999876411 13678
Q ss_pred cCCccccCCCCHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 219 SQHDVHIGEMTVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
+|+..+++.+|+.||+.++... .+... .+....+.++++.+||.+
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~ 138 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMAR----------------------------------AEAEKRAMELLDMVGLAD 138 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChh
Confidence 8887788889999999875321 11100 001123456788999987
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhh
Q 044321 298 CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDL 374 (521)
Q Consensus 298 ~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l 374 (521)
..+..+ ..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .++++|+++|+..++..+
T Consensus 139 ~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 213 (252)
T TIGR03005 139 KADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF 213 (252)
T ss_pred HhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 766555 459999999999999999999999999999998887766666655432 256677778888889999
Q ss_pred cCeEEEEeCCEEEEecCHhHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||++++|++|++++.|+.+++.
T Consensus 214 ~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 214 ADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988773
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=298.89 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=149.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---CC------------------------ceeeecCCc-
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LK------------------------NRCDISQHD- 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~~------------------------~~~~v~q~d- 222 (521)
..+|+||||+|++||+++|+|+||||||||+++|+|++++. .. ..+||+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 46999999999999999999999999999999999998641 11 126677765
Q ss_pred -cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 223 -VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 223 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
.+.+.+|+.+++......... ....+....+.++|+.+||.+..+.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------------------------------~~~~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------------------------------GNKKTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------------------------------CCHHHHHHHHHHHHHHCCCCChHHH
Confidence 356667777666543321100 0001123356778999999742110
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~V 378 (521)
-+.+++.|||||||||+||+||+.+|++||+||||+++|......+.+++.++ .++++++++|+...+.++||+|
T Consensus 147 --l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 147 --LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred --HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 12345579999999999999999999999999999988876555555544332 3566777789988899999999
Q ss_pred EEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 379 ILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 379 ivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
++|++|+|++.|+++++. ..|.+..+..++..
T Consensus 225 ~vm~~G~ive~g~~~~~~--------~~p~hpyt~~ll~~ 256 (326)
T PRK11022 225 IVMYAGQVVETGKAHDIF--------RAPRHPYTQALLRA 256 (326)
T ss_pred EEEECCEEEEECCHHHHh--------hCCCChHHHHHHHh
Confidence 999999999999999884 34555555555543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=288.00 Aligned_cols=188 Identities=21% Similarity=0.300 Sum_probs=148.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|++..++.+||
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 4699999999999999999999999999999999999876421 13688888878888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+......... . .+....++.+++.+||.+..+..+ +.
T Consensus 96 ~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 137 (241)
T PRK10895 96 YDNLMAVLQIRDDLS---------A------------------------EQREDRANELMEEFHIEHLRDSMG-----QS 137 (241)
T ss_pred HHHHhhhhhcccccC---------H------------------------HHHHHHHHHHHHHcCCHHHhhcch-----hh
Confidence 999987532210000 0 001124566888999987666555 45
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.++++++|+..++.++||++++|++|++++
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 9999999999999999999999999999999887776665555432 34566667788888999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 218 ~~~~~~~~ 225 (241)
T PRK10895 218 HGTPTEIL 225 (241)
T ss_pred eCCHHHHh
Confidence 99988763
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=288.07 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=147.5
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeec-CCccccCC
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDIS-QHDVHIGE 227 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~-q~d~~~~~ 227 (521)
.++.+++|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++ |.+.+++.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34556899999999999999999999999999999999999876521 125776 44556778
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|++|++.+.....+... .+....++.+++.+||.+..++.++
T Consensus 110 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR--- 152 (236)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh---
Confidence 999999987643322110 0011234568888999888887765
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+.+++.++||++++|++|
T Consensus 153 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 230 (236)
T cd03267 153 --QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 49999999999999999999999999999999988888877776554 2456677788888889999999999999
Q ss_pred EEEEec
Q 044321 385 HIVYQG 390 (521)
Q Consensus 385 ~iv~~G 390 (521)
++++.|
T Consensus 231 ~i~~~g 236 (236)
T cd03267 231 RLLYDG 236 (236)
T ss_pred EEEecC
Confidence 998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=287.68 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 4699999999999999999999999999999999999876421 13688888888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~~r 309 (521)
.+|+.++..... .. . ....+..+++.+ ++.+..++.+ .
T Consensus 98 ~~~l~~~~~~~~---~~----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~ 136 (237)
T PRK11614 98 EENLAMGGFFAE---RD----Q-----------------------------FQERIKWVYELFPRLHERRIQRA-----G 136 (237)
T ss_pred HHHHHHhhhccC---hh----H-----------------------------HHHHHHHHHHHHHHHHHHHhCch-----h
Confidence 999987532100 00 0 001223445555 3555444444 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||++++|++|+++
T Consensus 137 ~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 69999999999999999999999999999999888777776665432 3456666778888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (237)
T PRK11614 217 LEDTGDALL 225 (237)
T ss_pred eeCCHHHHh
Confidence 999998874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=291.52 Aligned_cols=198 Identities=25% Similarity=0.318 Sum_probs=153.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|..+ ..+|++|+.. .+..+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 3599999999999999999999999999999999999876421 1268888752 34457
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....+..+++.+||.+..++.++
T Consensus 95 tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 136 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSK----------------------------------EEVEKRVKEALKAVGMEGFENKPPH---- 136 (275)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchhhcCChh----
Confidence 99999987532111100 0111235668899999887777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||+||++||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+...+.++||++++|++|++
T Consensus 137 -~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i 215 (275)
T PRK13639 137 -HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215 (275)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777776666543 356677778888889999999999999999
Q ss_pred EEecCHhHHH---HHHHHcCCCCC
Q 044321 387 VYQGPREYVL---EFFKFMGFECP 407 (521)
Q Consensus 387 v~~G~~~~v~---~~f~~~g~~~p 407 (521)
++.|+++++. ..++..|+..|
T Consensus 216 ~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 216 IKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred EEeCCHHHHhcChHHHHhcCCCCC
Confidence 9999999875 23444455444
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=286.57 Aligned_cols=186 Identities=25% Similarity=0.283 Sum_probs=149.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------------ceeeecCCcccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------NRCDISQHDVHI 225 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------~~~~v~q~d~~~ 225 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 3699999999999999999999999999999999999876421 126788888888
Q ss_pred CCCCHHHHHHHHH-HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 226 GEMTVRETLAFSA-RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~-~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+.+||.||+.+.. ...+... .+....+..+++.+||....++.+.
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRFPL 140 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh
Confidence 8899999987532 1111100 0011235668889999877776654
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++++. .++++++++|+..++.++||++++|.
T Consensus 141 -----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 215 (242)
T PRK11124 141 -----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME 215 (242)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 59999999999999999999999999999999988887777776543 35667777788888889999999999
Q ss_pred CCEEEEecCHhHH
Q 044321 383 NGHIVYQGPREYV 395 (521)
Q Consensus 383 ~G~iv~~G~~~~v 395 (521)
+|++++.|+++++
T Consensus 216 ~g~i~~~~~~~~~ 228 (242)
T PRK11124 216 NGHIVEQGDASCF 228 (242)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=292.42 Aligned_cols=186 Identities=26% Similarity=0.304 Sum_probs=146.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc-ccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV-HIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~-~~~~lT 229 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .++.+|
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 3599999999999999999999999999999999999876421 1267788754 366789
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.||+.|.....+... .+....+..+++.+||.+..++.++
T Consensus 95 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 135 (274)
T PRK13644 95 VEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSPK----- 135 (274)
T ss_pred HHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCcc-----
Confidence 9999987643221100 0112245678899999887776664
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+++|++++|+..++ ..||+|++|++|+++
T Consensus 136 ~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIV 214 (274)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEE
Confidence 59999999999999999999999999999998877666665555432 356666677888777 569999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 215 ~~g~~~~~~ 223 (274)
T PRK13644 215 LEGEPENVL 223 (274)
T ss_pred EECCHHHHh
Confidence 999998874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=286.59 Aligned_cols=195 Identities=21% Similarity=0.288 Sum_probs=152.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+||
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 4699999999999999999999999999999999999876421 13688898888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+........ +. .+ ... ...+....++++++.+|+.+..++.++ .
T Consensus 95 ~~nl~~~~~~~~~~--~~---~~---------~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (242)
T TIGR03411 95 FENLELALPRDKSV--FA---SL---------FFR------------LSAEEKDRIEEVLETIGLADEADRLAG-----L 143 (242)
T ss_pred HHHHHHhhhccccc--cc---cc---------ccc------------cHHHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99998854311000 00 00 000 000112345678899999877776665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.+||+++|+.+++.++||+|++|++|++++.
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999888877777776553 235666777888889999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=287.63 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=148.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC-------------------ceeeecCCccccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK-------------------NRCDISQHDVHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~-------------------~~~~v~q~d~~~~ 226 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++| ..+ ..+|++|+..+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 3699999999999999999999999999999999999864 111 1268899887788
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccccc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CADTM 302 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~dt~ 302 (521)
.+||.||+.+.......... . .+....+.++++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------K------------------------KELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------H------------------------HHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999886432111000 0 001123466888889854 23444
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++.++||+|++|
T Consensus 144 -----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 144 -----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4569999999999999999999999999999999888777777766543 3466777788888888999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999998874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.99 Aligned_cols=240 Identities=24% Similarity=0.329 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
...++.+..+++++++..+.. ... ...+..+ ...+|+|+|++|+|..
T Consensus 314 f~~a~~aa~~I~~~i~~~~~i-----~~~-~~~~~~~~~~~g~ief~nV~FsYPs------------------------- 362 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPSI-----DPY-SKGGRVLSSIKGEIEFRNVCFSYPS------------------------- 362 (1228)
T ss_pred HhccccchHHHHHHhcCCCCC-----Ccc-cccCCcccccccceEEEEEEecCCC-------------------------
Confidence 667788899999999988762 111 1122222 3568999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+..||+|+||.|++|+.++|+|||||||||++++|.++++|+.+ ..+.|.|++
T Consensus 363 ------Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 363 ------RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred ------CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 1245799999999999999999999999999999999999999742 126788887
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
. ++..|++||+.|+. |+.+.+...+++.... ..+++. .|++.+||.
T Consensus 437 v-lF~~tI~eNI~~G~-------------------------~dat~~~i~~a~k~an-----a~~fi~---~lp~g~~T~ 482 (1228)
T KOG0055|consen 437 V-LFATTIRENIRYGK-------------------------PDATREEIEEAAKAAN-----AHDFIL---KLPDGYDTL 482 (1228)
T ss_pred h-hhcccHHHHHhcCC-------------------------CcccHHHHHHHHHHcc-----HHHHHH---hhHHhhccc
Confidence 5 55789999999872 3333333333333221 334444 488999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
||+..+ .|||||||||+|||||+.+|+||||||||+++|.+..+.+++.+.+. ++|+|++.| .... .+.+|+|++
T Consensus 483 vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH-RLSt-IrnaD~I~v 559 (1228)
T KOG0055|consen 483 VGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH-RLST-IRNADKIAV 559 (1228)
T ss_pred ccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee-ehhh-hhccCEEEE
Confidence 998554 49999999999999999999999999999999988777666665443 678877664 4444 455999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+||+.|++++++.
T Consensus 560 ~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 560 MEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999999975
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=284.71 Aligned_cols=182 Identities=23% Similarity=0.266 Sum_probs=144.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 4699999999999999999999999999999999999876421 23688998888888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|++||+.+.....+... .+....+..+++.+||.+..++.+.
T Consensus 102 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (233)
T PRK11629 102 FTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRPS--- 144 (233)
T ss_pred CCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh---
Confidence 999999988643221100 0011235678899999877766554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++||+++|+.+++.. +|++++|++|
T Consensus 145 --~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G 221 (233)
T PRK11629 145 --ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDG 221 (233)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECC
Confidence 59999999999999999999999999999999888777777666543 35666667788777765 5799999999
Q ss_pred EEEEecCH
Q 044321 385 HIVYQGPR 392 (521)
Q Consensus 385 ~iv~~G~~ 392 (521)
++++.|+.
T Consensus 222 ~i~~~~~~ 229 (233)
T PRK11629 222 RLTAELSL 229 (233)
T ss_pred EEEEEecc
Confidence 99988863
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=291.48 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=145.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+|+||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .++..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 4699999999999999999999999999999999999877521 1256666643 23445
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.+|+.+.....+... .+....++.+++.+||.+..++.++
T Consensus 94 ~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPIQ---- 135 (271)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCch----
Confidence 67777766432211100 0111235668889999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||++++|++|++
T Consensus 136 -~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 136 -CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214 (271)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777776666543 345677778888889999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 215 ~~~g~~~~~~ 224 (271)
T PRK13638 215 LTHGAPGEVF 224 (271)
T ss_pred EEeCCHHHHh
Confidence 9999988774
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=288.40 Aligned_cols=187 Identities=24% Similarity=0.279 Sum_probs=149.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------ceeee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------------NRCDI 218 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------------~~~~v 218 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 4699999999999999999999999999999999999876421 12788
Q ss_pred cCCccccCCCCHHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 219 SQHDVHIGEMTVRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
+|+..+++.+||+||+.++.. ...... .+....+.++++.+||.+
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~ 143 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------QEARERAVKYLAKVGIDE 143 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCH----------------------------------HHHHHHHHHHHHHcCCCh
Confidence 888878888999999987532 111100 011223566889999976
Q ss_pred cc-cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh
Q 044321 298 CA-DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL 374 (521)
Q Consensus 298 ~~-dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l 374 (521)
.. +..+ ..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+..++..+
T Consensus 144 ~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~ 218 (257)
T PRK10619 144 RAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 218 (257)
T ss_pred hhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 53 4443 469999999999999999999999999999999888777777765543 356667777888888899
Q ss_pred cCeEEEEeCCEEEEecCHhHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+|++|++|++++.|+++++.
T Consensus 219 ~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 219 SSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred cCEEEEEECCEEEEeCCHHHhh
Confidence 9999999999999999988763
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=285.29 Aligned_cols=183 Identities=25% Similarity=0.288 Sum_probs=145.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 4699999999999999999999999999999999999876421 13688998888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~r 309 (521)
.+|+.+.....+.. .....+.+++.++ +.+..++.+ +
T Consensus 93 ~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~ 130 (230)
T TIGR03410 93 EENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRRG-----G 130 (230)
T ss_pred HHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCCh-----h
Confidence 99998764321100 0012244566665 455455554 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .++++++++|+.+++..+||+|++|++|++
T Consensus 131 ~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210 (230)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777777766543 256677778888889999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|+.+++
T Consensus 211 ~~~~~~~~~ 219 (230)
T TIGR03410 211 VASGAGDEL 219 (230)
T ss_pred EEECCHHHc
Confidence 999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=282.59 Aligned_cols=174 Identities=25% Similarity=0.310 Sum_probs=140.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCcc-ccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDV-HIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~-~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .++.+|+.||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 4699999999999999999999999999999999999877531 1367888753 3456799999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+...... .....+.++++.+||.+..++.++ .|||
T Consensus 93 l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 129 (205)
T cd03226 93 LLLGLKELD--------------------------------------AGNEQAETVLKDLDLYALKERHPL-----SLSG 129 (205)
T ss_pred HhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchhcCCCch-----hCCH
Confidence 877532110 001134668899999887776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+..++.++||++++|++|++|
T Consensus 130 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 130 GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999988877777776543 3456666778888888999999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.42 Aligned_cols=241 Identities=20% Similarity=0.212 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++.+..++|+.++++.++|... .............|+|+|++|.+.
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~~~~~~I~~~~vsf~y~---------------------------- 484 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEFIN-----KKKRTELNNLNGDIVINDVSYSYG---------------------------- 484 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCcccc-----cccccCCCCCCCcEEEEEEEEEcC----------------------------
Confidence 56777888999999877665210 000000111123699999999862
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
..+.+|+|+|++|++|+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.+
T Consensus 485 -----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 485 -----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred -----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 113599999999999999999999999999999999999988632 12899998765
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
| ..|++|||.++.. ++.+.+.+.+++...+ .++.+. .++..+||.+|
T Consensus 560 f-~gTI~eNi~l~~~------------------------~~~~~~~i~~a~~~a~------l~~~i~--~lp~gldt~i~ 606 (708)
T TIGR01193 560 F-SGSILENLLLGAK------------------------ENVSQDEIWAACEIAE------IKDDIE--NMPLGYQTELS 606 (708)
T ss_pred h-hHHHHHHHhccCC------------------------CCCCHHHHHHHHHHhC------CHHHHH--hcccccCcEec
Confidence 5 5699999988521 1111122222221111 111222 36778899998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+ .+.+||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+....+.++|+++|.. .+...||+|++|++|
T Consensus 607 e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~-~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 607 E-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRL-SVAKQSDKIIVLDHG 684 (708)
T ss_pred C-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecch-HHHHcCCEEEEEECC
Confidence 6 45789999999999999999999999999999998888777776666554333444455554 456789999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++++.|+++++++
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=289.32 Aligned_cols=187 Identities=29% Similarity=0.422 Sum_probs=148.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+||+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 4699999999999999999999999999999999999876421 126888887777889999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.+......... .+....+..+++.+||.+..++.++ .|
T Consensus 95 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 135 (258)
T PRK13548 95 EVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDYP-----QL 135 (258)
T ss_pred HHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc-----cC
Confidence 99987532111000 0011234668889999877776665 59
Q ss_pred ChHHHHHHHHHHHHc------CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 312 SGGQRKRVTTGEMLV------GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 312 SGGqrQRvaIAraLv------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
||||||||+||+||+ .+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++..+||+|++|+
T Consensus 136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 215 (258)
T PRK13548 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH 215 (258)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 999999999999999 599999999999998887766665555432 24566667788888999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (258)
T PRK13548 216 QGRLVADGTPAEVL 229 (258)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=288.17 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=152.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 4699999999999999999999999999999999999876521 12577998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.++....... +....+. .. +... ....+....+..+++.+||.+..++.++ .
T Consensus 98 ~enl~~~~~~~~~~---~~~~~~~--------~~-~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (255)
T PRK11300 98 IENLLVAQHQQLKT---GLFSGLL--------KT-PAFR-------RAESEALDRAATWLERVGLLEHANRQAG-----N 153 (255)
T ss_pred HHHHHHhhhccccc---hhhhhhc--------cc-cccc-------cchhHHHHHHHHHHHhCChhhhhhCChh-----h
Confidence 99999864311000 0000000 00 0000 0000112245668889999877776655 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++.++||++++|++|+++
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999988877777766543 2566777788888999999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 234 ~~~~~~~~~ 242 (255)
T PRK11300 234 ANGTPEEIR 242 (255)
T ss_pred ecCCHHHHh
Confidence 999988763
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=325.45 Aligned_cols=238 Identities=26% Similarity=0.359 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+..++|+.++++.+++.. . .......+ ...|+|+|++|.|..
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~~------~-~~~~~~~~~~~~~I~~~~vsf~Y~~------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVERP------E-GTRFLHRPRLQGEIEFRNVSFAYPG------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC------C-CCCCCCCCCccceEEEEEEEEEeCC-------------------------
Confidence 6777888999999988766520 0 00011111 236999999998731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....+|+|+||+|+||+.++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 476 -------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~ 548 (694)
T TIGR03375 476 -------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548 (694)
T ss_pred -------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence 123599999999999999999999999999999999999988642 127899987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++|||.++.. +.+.+.+..+....+ ..+ .++ .|++..||.
T Consensus 549 ~lf-~~TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~-----l~~-~i~--~lp~gl~T~ 594 (694)
T TIGR03375 549 RLF-YGTLRDNIALGAP-------------------------YADDEEILRAAELAG-----VTE-FVR--RHPDGLDMQ 594 (694)
T ss_pred hhh-hhhHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC-----hHH-HHH--hCcccccce
Confidence 655 5799999987521 112222222221111 112 222 367889999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+|+ .+..||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+.+. +.|+|++ +|.. .+...||+|++
T Consensus 595 i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI-tHrl-~~~~~~D~iiv 671 (694)
T TIGR03375 595 IGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV-THRT-SLLDLVDRIIV 671 (694)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-ecCH-HHHHhCCEEEE
Confidence 987 45679999999999999999999999999999998888777776666543 3555555 4554 45678999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|++++.|+++++++
T Consensus 672 l~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 672 MDNGRIVADGPKDQVLE 688 (694)
T ss_pred EeCCEEEeeCCHHHHHH
Confidence 99999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=286.17 Aligned_cols=189 Identities=22% Similarity=0.284 Sum_probs=144.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-----CCC---------------------CceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-----SSL---------------------KNRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-----~~~---------------------~~~~~v~q~d~~~ 225 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|++. |+. ...+|++|+...+
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999853 211 0136888887666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ .||.||+.|.....+.... ......+..+++.+||.+...... +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 5999999886432221000 001123455777888854221111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..++.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+|++++|+..++.++||+|++|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 344569999999999999999999999999999999888777777766543 2456666778888899999999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++++.|+++++
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99999998876
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=310.93 Aligned_cols=246 Identities=24% Similarity=0.306 Sum_probs=178.8
Q ss_pred ccccCCc-----HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhh
Q 044321 77 VDVNNLG-----QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCA 151 (521)
Q Consensus 77 ~~~~~l~-----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~ 151 (521)
.|++.|| .+...+..|+++...+.+++..-... ...-...|.++++.+||+|.++
T Consensus 272 ~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~----~~~~~~~~~~ei~~~~l~~~y~---------------- 331 (559)
T COG4988 272 QPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE----KAEVANEPPIEISLENLSFRYP---------------- 331 (559)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc----ccccccCCCceeeecceEEecC----------------
Confidence 6788888 66677888899888888776211000 0011123567888889999863
Q ss_pred hHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------
Q 044321 152 NIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------ 213 (521)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------ 213 (521)
+++++++|+||++++|+.++|+|+||||||||+++|+|+++|+.+
T Consensus 332 -----------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 332 -----------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred -----------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 122799999999999999999999999999999999999987532
Q ss_pred -ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHH
Q 044321 214 -NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKI 292 (521)
Q Consensus 214 -~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 292 (521)
...+|+|++. ++..|++||+.++. ++.+.+....+.... .+.+.
T Consensus 395 k~i~~v~Q~p~-lf~gTireNi~l~~-------------------------~~~s~e~i~~al~~a---------~l~~~ 439 (559)
T COG4988 395 KQISWVSQNPY-LFAGTIRENILLAR-------------------------PDASDEEIIAALDQA---------GLLEF 439 (559)
T ss_pred hHeeeeCCCCc-cccccHHHHhhccC-------------------------CcCCHHHHHHHHHHh---------cHHHh
Confidence 1278888764 55689999999863 112222221111111 12233
Q ss_pred cCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHH
Q 044321 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPET 371 (521)
Q Consensus 293 lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~ 371 (521)
+.-++..||.+|+ .+++|||||+|||++||||+.+++++|+||||+++|.+..+.+.+.+.+. +.+++++++|.. ..
T Consensus 440 v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl-~~ 517 (559)
T COG4988 440 VPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRL-ED 517 (559)
T ss_pred hcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcCh-HH
Confidence 3335678999996 67889999999999999999999999999999988877666655554433 234444455554 45
Q ss_pred HhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 372 YDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 372 ~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..-+|+|++|++|++++.|.++++.
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHh
Confidence 6679999999999999999999985
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=290.36 Aligned_cols=187 Identities=22% Similarity=0.274 Sum_probs=145.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcc-ccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDV-HIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~-~~~ 226 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+.. .+.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 3599999999999999999999999999999999999876421 1267888752 334
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~ 305 (521)
..||+||+.|.....+... .+....++.+++.+||.. ..++.+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 143 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKNP-- 143 (280)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 5799999887543211100 001123566788899963 455554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 220 (280)
T PRK13649 144 ---FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEK 220 (280)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEEC
Confidence 459999999999999999999999999999999888777777765543 355666777888888899999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (280)
T PRK13649 221 GKLVLSGKPKDIF 233 (280)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=281.23 Aligned_cols=177 Identities=20% Similarity=0.281 Sum_probs=141.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 4699999999999999999999999999999999999876421 136888888888889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... .+....+.++++.+||.+..++.++
T Consensus 94 t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (214)
T cd03292 94 NVYENVAFALEVTGVPP----------------------------------REIRKRVPAALELVGLSHKHRALPA---- 135 (214)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh----
Confidence 99999988643221100 0011235668889999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+...+.++||++++|++|++
T Consensus 136 -~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 136 -ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred -hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 59999999999999999999999999999999887777776665443 356677777888888899999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=282.12 Aligned_cols=180 Identities=25% Similarity=0.309 Sum_probs=147.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|++..++.+|++||+.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 4699999999999999999999999999999999999876532 2368888888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.....+.. ...+..+++.+||.+..+..++ .|||||
T Consensus 93 ~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 129 (223)
T TIGR03740 93 VHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAK-----QFSLGM 129 (223)
T ss_pred HHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHh-----hCCHHH
Confidence 754321100 0124567889999877776654 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
+||++||+||+.+|++|+|||||+++|....+.+.+++.+. .+.+|++++|+..++.++||++++|++|++++.|++.
T Consensus 130 ~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 130 KQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999888777777766543 2456666778888888999999999999999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=291.86 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=151.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCcc-ccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~-~~~~l 228 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|... ..+|++|+.. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 599999999999999999999999999999999999877531 1268888753 56788
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 101 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVPR----------------------------------PEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987543221100 011224567889999987777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
+.|||||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+ ..||++++|++|+
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~ 220 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGK 220 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCE
Confidence 469999999999999999999999999999998888777776666443 255666667777777 5899999999999
Q ss_pred EEEecCHhHHHH---HHHHcCCCCC
Q 044321 386 IVYQGPREYVLE---FFKFMGFECP 407 (521)
Q Consensus 386 iv~~G~~~~v~~---~f~~~g~~~p 407 (521)
+++.|+++++.. ..+..|+..|
T Consensus 221 i~~~g~~~~~~~~~~~~~~~~~~~~ 245 (282)
T PRK13640 221 LLAQGSPVEIFSKVEMLKEIGLDIP 245 (282)
T ss_pred EEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999988753 2334444433
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=281.00 Aligned_cols=176 Identities=27% Similarity=0.361 Sum_probs=140.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 4699999999999999999999999999999999999876421 126888888778889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... ......+..+++.+||.+..++.+.
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (214)
T TIGR02673 95 TVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFPE---- 136 (214)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh----
Confidence 99999988643221100 0011235678899999876666654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.++++++|+..++..+||++++|++|+
T Consensus 137 -~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 137 -QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred -hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 59999999999999999999999999999999888777777766543 35566777788889999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=284.44 Aligned_cols=182 Identities=22% Similarity=0.315 Sum_probs=143.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .||.
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVK 94 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHH
Confidence 3599999999999999999999999999999999999876521 1267777765554 6888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~ 310 (521)
||+.+...... . ....+..+++.+||. +..++.+ ..
T Consensus 95 e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~~ 131 (241)
T PRK14250 95 DNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRDV-----KN 131 (241)
T ss_pred HHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCCc-----cc
Confidence 88766422100 0 011245678889996 4455544 46
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+++||+++|+.+++.++||+|++|++|+++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999998887777766665443 2556667778888889999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 212 ~~~~~~~~~ 220 (241)
T PRK14250 212 EYAKTYDFF 220 (241)
T ss_pred EeCCHHHHh
Confidence 999988773
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=287.75 Aligned_cols=189 Identities=25% Similarity=0.363 Sum_probs=150.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+|+.
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 4699999999999999999999999999999999999876421 137888887777888999
Q ss_pred HHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
||+.++... ..... ... ......++.+++.+||.+..++.++ .
T Consensus 95 ~~i~~~~~~~~~~~~-------------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 138 (255)
T PRK11231 95 ELVAYGRSPWLSLWG-------------------RLS------------AEDNARVNQAMEQTRINHLADRRLT-----D 138 (255)
T ss_pred HHHHhccchhhhhcc-------------------CCC------------HHHHHHHHHHHHHcCCHHHHcCCcc-----c
Confidence 999875210 00000 000 0011235668889999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||+|||+||+||+.+|++|||||||+++|....+.+.+++... .++++++++|+..++.++||++++|++|++++
T Consensus 139 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999988888777776543 35667777888888999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+.+++
T Consensus 219 ~~~~~~~ 225 (255)
T PRK11231 219 QGTPEEV 225 (255)
T ss_pred EcCHHHh
Confidence 9998776
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=289.08 Aligned_cols=186 Identities=26% Similarity=0.328 Sum_probs=146.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV 230 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+.. .++.+||
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 3699999999999999999999999999999999999876421 1268888753 5677899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.+.....+... .+....+.++++.+||.+..++.+. .
T Consensus 102 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 142 (271)
T PRK13632 102 EDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEPQ-----N 142 (271)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCcc-----c
Confidence 999987643211100 0011245678899999877776664 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. +++++++++|+..++. .||++++|++|+++
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 221 (271)
T PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI 221 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887777666666543 3355666667666664 79999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+.+++.
T Consensus 222 ~~g~~~~~~ 230 (271)
T PRK13632 222 AQGKPKEIL 230 (271)
T ss_pred EecCHHHHh
Confidence 999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=285.24 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=145.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---C---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---L---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++ |. . ...+|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 369999999999999999999999999999999999875 21 1 013688888888
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++.+|+.||+.+.....+.... .+....++++++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 8889999999875432110000 001123456788888854211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ..++||+++|+.+++.++||++++|++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEEC
Confidence 1234569999999999999999999999999999998887776666655443 235667777888889999999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|++++.|+++++
T Consensus 223 G~i~~~~~~~~~ 234 (252)
T PRK14256 223 GDLVECGETKKI 234 (252)
T ss_pred CEEEEeCCHHHH
Confidence 999999998877
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=290.13 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=151.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc-ccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV-HIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~-~~~~lT 229 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++. .+...|
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 4699999999999999999999999999999999999887521 1267777653 233568
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|.+++.|.....+... .+....++++++.+||....++.++
T Consensus 103 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (280)
T PRK13633 103 VEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAPH----- 143 (280)
T ss_pred HHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc-----
Confidence 8888877643221100 0112345778999999887777665
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.. ||++++|++|++
T Consensus 144 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i 222 (280)
T PRK13633 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKV 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEE
Confidence 59999999999999999999999999999998887777776666543 25566667787777765 999999999999
Q ss_pred EEecCHhHHHH---HHHHcCCCCCC
Q 044321 387 VYQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 387 v~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
++.|+++++.. .+...++..|.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 223 VMEGTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred EEecCHHHHhcChHHHHhcCCCCCc
Confidence 99999988753 23344555443
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=325.53 Aligned_cols=237 Identities=21% Similarity=0.286 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC---ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP---TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.++.....+|+.++++.+++. +..+...| ...|+|+|++|.++.
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~---------~~~~~~~~~~~~~~I~~~nVsf~Y~~------------------------ 490 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNI---------PLTGTLAPLNLEGLIEFQDVSFSYPN------------------------ 490 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCC---------CCCCCCCCCCCCCeEEEEEEEEECCC------------------------
Confidence 566677888888888765541 00111111 236999999998731
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
..++.+|+|+||+|+||+.++|+||||||||||+++|+|+++|+.+ ..+||+|+
T Consensus 491 -------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 491 -------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred -------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 0124699999999999999999999999999999999999988632 12789997
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+.+ +..|++|||.++.. +.+.+...++....+ .++.++ .+++..||
T Consensus 564 ~~l-F~gTIreNI~~g~~-------------------------~~~~e~i~~al~~a~------l~~~i~--~lp~GldT 609 (711)
T TIGR00958 564 PVL-FSGSVRENIAYGLT-------------------------DTPDEEIMAAAKAAN------AHDFIM--EFPNGYDT 609 (711)
T ss_pred ccc-cccCHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------CHHHHH--hCCCccCC
Confidence 655 46899999988631 011111111111110 111222 36677899
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+|+ ....||||||||++|||||+++|+||||||||+++|.+..+.+.+.. ...+.++|+++|.. .....||+|++|
T Consensus 610 ~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~-~~~~~TvIiItHrl-~~i~~aD~IivL 686 (711)
T TIGR00958 610 EVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESR-SRASRTVLLIAHRL-STVERADQILVL 686 (711)
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhh-ccCCCeEEEEeccH-HHHHhCCEEEEE
Confidence 9986 45679999999999999999999999999999999999888888732 23334444455555 456779999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|+++++.+
T Consensus 687 ~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 687 KKGSVVEMGTHKQLME 702 (711)
T ss_pred ECCEEEEeeCHHHHHh
Confidence 9999999999999864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=285.28 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=146.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ .+ ..+|++|+...
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 36999999999999999999999999999999999998752 10 12678888878
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++.+||.||+.+........... .+....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhhhc
Confidence 88899999998764321110000 001123456778888743 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+...+..+||+|+
T Consensus 145 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 145 D-----YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred c-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEE
Confidence 3 34569999999999999999999999999999998887777776666543 23566777788888899999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=286.36 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=146.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|++.| ..+ ..+|++|+..+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 3699999999999999999999999999999999999853 211 12778887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.++....+.... .+....+..+++.++|.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 66 6999999876432111000 001123456788888854322222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..++.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.+++.++||++++|++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 2345679999999999999999999999999999999888777777666543 245667777888889999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14237 238 GDLIEYDKTRNIF 250 (267)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998873
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=283.25 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=145.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC---CCCC--CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK---LDSS--LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~---l~~~--~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+ +++. .+ ..+|++|+...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 4699999999999999999999999999999999996 2321 10 13778887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.||+.+.....+.... ......++++++.+||.+......
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh-
Confidence 65 6999999876432211000 001123466788888864321111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+.++||+|++|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 1234569999999999999999999999999999999888777777766543 235666677888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~~~~~~~~~~~~ 233 (250)
T PRK14245 221 GEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEECCHHHHh
Confidence 9999999999884
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=283.00 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|.++|..+ ..+|++|+...++.+|+.+|
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHH
Confidence 4699999999999999999999999999999999999887531 23788888888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... ......++.+++.+||.+..++.+. .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~ 133 (232)
T cd03300 93 IAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKPS-----QLSG 133 (232)
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 987643221100 0011234668899999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|+++||||||+++|....+.+.+++... .+.+|++++|+..++.++||++++|++|++++.|
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998888777776666443 2456666677788889999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+.+++.
T Consensus 214 ~~~~~~ 219 (232)
T cd03300 214 TPEEIY 219 (232)
T ss_pred CHHHHH
Confidence 887763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=281.35 Aligned_cols=182 Identities=25% Similarity=0.281 Sum_probs=139.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIGE 227 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~~ 227 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+. .+++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 699999999999999999999999999999999999876421 136788876 35567
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
+||++|+.+.....+.... + .........+++.++|. ...+..++
T Consensus 99 ~tv~~nl~~~~~~~~~~~~----------------------~----------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 144 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSK----------------------K----------EARKEAVLLLLVGVGLPEEVLNRYPH-- 144 (228)
T ss_pred CCHHHHHHHHHHhccCCcH----------------------H----------HHHHHHHHHHHHHCCCChhHhhCCch--
Confidence 9999999876432211000 0 00011124578888985 45565554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+|++|++
T Consensus 145 ---~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 145 ---ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 59999999999999999999999999999998887777666665443 155666677888888889999999999
Q ss_pred CEEEEec
Q 044321 384 GHIVYQG 390 (521)
Q Consensus 384 G~iv~~G 390 (521)
|+++..|
T Consensus 222 G~i~~~g 228 (228)
T cd03257 222 GKIVEEG 228 (228)
T ss_pred CEEEecC
Confidence 9998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=302.93 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=153.8
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCCCHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~lTV~E 232 (521)
||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 89999999999999999999999999999999876421 1368899988899999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.... ....++.+++.+||.+..++.++ .||
T Consensus 96 nl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LS 130 (352)
T PRK11144 96 NLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPG-----SLS 130 (352)
T ss_pred HHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCcc-----cCC
Confidence 998753100 01134668899999887776664 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|....+.+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998887766666555432 245667778888899999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|+++++. ..|....++.|+.
T Consensus 211 g~~~~i~--------~~p~~~~~~~~~g 230 (352)
T PRK11144 211 GPLEEVW--------ASSAMRPWLPKEE 230 (352)
T ss_pred cCHHHHH--------hCcchhhhhcccC
Confidence 9999884 4565555666653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=288.96 Aligned_cols=190 Identities=23% Similarity=0.293 Sum_probs=149.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+|+.
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR 103 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHH
Confidence 3699999999999999999999999999999999999876421 137888887778889999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.+...... .. . ... . ......++.+++.+||.+..++.++ .|
T Consensus 104 e~l~~~~~~~~-~~-~---------------~~~-~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 148 (265)
T PRK10575 104 ELVAIGRYPWH-GA-L---------------GRF-G------------AADREKVEEAISLVGLKPLAHRLVD-----SL 148 (265)
T ss_pred HHHHhCccccc-cc-c---------------cCC-C------------HHHHHHHHHHHHHcCCHHHhcCCcc-----cC
Confidence 99987531100 00 0 000 0 0011235678899999877776665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|++|++++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999888776666655443 25667777888888999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+.+++
T Consensus 229 ~~~~~~~ 235 (265)
T PRK10575 229 QGTPAEL 235 (265)
T ss_pred ecCHHHh
Confidence 9998776
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=279.55 Aligned_cols=177 Identities=21% Similarity=0.256 Sum_probs=138.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 4699999999999999999999999999999999999876421 13688888777888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|++||+.+......... .+....+.++++.+||.+..++.++
T Consensus 98 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRPS--- 140 (221)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh---
Confidence 999999987543211100 0011234568889999877766554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+. .+|+|++|++|
T Consensus 141 --~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~d~v~~l~~G 217 (221)
T TIGR02211 141 --ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK-KLDRVLEMKDG 217 (221)
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEEEeCC
Confidence 59999999999999999999999999999998887777666665432 2455666677777664 58999999999
Q ss_pred EEE
Q 044321 385 HIV 387 (521)
Q Consensus 385 ~iv 387 (521)
+++
T Consensus 218 ~i~ 220 (221)
T TIGR02211 218 QLF 220 (221)
T ss_pred Eec
Confidence 986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=285.70 Aligned_cols=185 Identities=17% Similarity=0.226 Sum_probs=143.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CCC---------------------ceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SLK---------------------NRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~~---------------------~~~~v~q~d~~~ 225 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|++. | +.+ ..+|++|+...+
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999975 2 110 126788877666
Q ss_pred CCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 226 GEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
+ +|+++|+.+..... +... .+....++++++.+|+.. ..+
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR----------------------------------AEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH----------------------------------HHHHHHHHHHHHHcCCChhhHHHHh
Confidence 6 89999998764321 1100 001123456788888742 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+++
T Consensus 152 ~-----~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 152 Q-----SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred c-----CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999998888777776666543 34566777788888889999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+.+++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 227 FMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=283.77 Aligned_cols=195 Identities=22% Similarity=0.241 Sum_probs=147.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++ +|+.+ ..+|++|+...++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 46999999999999999999999999999999999984 34311 126788988888899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
|+.+++.+.......... ....+ ..+....+..+++.+||. ...++.++
T Consensus 93 t~~~~~~~~~~~~~~~~~----------------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (243)
T TIGR01978 93 SNLEFLRSALNARRSARG----------------EEPLD-----------LLDFLKLLKAKLALLGMDEEFLNRSVN--- 142 (243)
T ss_pred CHHHHHHHHHHHhhcccc----------------ccccc-----------HHHHHHHHHHHHHHcCCchhhcccccc---
Confidence 999999876432110000 00000 001122456788999997 35555443
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~G 384 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||++++|++|
T Consensus 143 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 143 -EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred -cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 149999999999999999999999999999998887777776666543 345666677888888888 8999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 222 ~i~~~g~~~~~~ 233 (243)
T TIGR01978 222 RIVKSGDVELAK 233 (243)
T ss_pred EEEEecCHHHhc
Confidence 999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=283.88 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=144.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+.. |. .+ ..+|++|+...
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 369999999999999999999999999999999999843 31 10 13688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ +||.||+.+.....+.... ......+..+++.+++........
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRL- 142 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-
Confidence 65 8999999876432211000 001123455677777743211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+.+++.++||+|++|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD 222 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 2344569999999999999999999999999999999888777777766543 235666777888889999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T PRK14239 223 GDLIEYNDTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999998873
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=279.77 Aligned_cols=179 Identities=21% Similarity=0.246 Sum_probs=142.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 4699999999999999999999999999999999999876521 126888887777889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... .+....++.+++.+||.+..++.++
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (222)
T PRK10908 95 TVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFPI---- 136 (222)
T ss_pred cHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCch----
Confidence 99999987643221100 0011234567889999876666554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++..+||+|++|++|++
T Consensus 137 -~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 137 -QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215 (222)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999887766666655433 356677778888889999999999999998
Q ss_pred EE
Q 044321 387 VY 388 (521)
Q Consensus 387 v~ 388 (521)
+.
T Consensus 216 ~~ 217 (222)
T PRK10908 216 HG 217 (222)
T ss_pred cc
Confidence 53
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=286.76 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=149.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV~ 231 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+.. .++..|+.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 589999999999999999999999999999999999876521 1267888753 56778888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+|+.|.....+... .+....+..+++.+|+.+..++.++ .|
T Consensus 103 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 143 (269)
T PRK13648 103 YDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEPN-----AL 143 (269)
T ss_pred HHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCcc-----cC
Confidence 88877543211100 0011234668899999877776554 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.. ||+|++|++|++++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~ 222 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK 222 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE
Confidence 999999999999999999999999999998887777766665443 24556666777777765 99999999999999
Q ss_pred ecCHhHHHH---HHHHcCCCCC
Q 044321 389 QGPREYVLE---FFKFMGFECP 407 (521)
Q Consensus 389 ~G~~~~v~~---~f~~~g~~~p 407 (521)
.|+++++.+ .+...|+++|
T Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 223 EGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred ecCHHHHhcCHHHHHhcCCCCC
Confidence 999988742 3444455554
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=285.06 Aligned_cols=188 Identities=19% Similarity=0.267 Sum_probs=145.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.| +.+ ..+|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 3699999999999999999999999999999999999863 110 13678888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++.+||.||+.+.....+.... ......++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhh
Confidence 8889999999876432111000 00112345678888874 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. +..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++.++||+|+
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~ 218 (258)
T PRK14241 144 KP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTA 218 (258)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 33 4569999999999999999999999999999999888777776666543 23566677788888999999999
Q ss_pred EEe------CCEEEEecCHhHHH
Q 044321 380 LIS------NGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~------~G~iv~~G~~~~v~ 396 (521)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999998874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=316.65 Aligned_cols=239 Identities=20% Similarity=0.262 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.+..+..++|+.++++.+++.. .+....+.+...|+|+|++|.++.
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 353 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEKD-------EGKRVIERAKGDIEFRNVTFTYPG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcCC-------CCCcCCCCCCCeEEEEEEEEecCC---------------------------
Confidence 4555667788877776544310 000011111236999999998621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+.+.+|+|+|++|++|+.++|+||||||||||+++|+|+++|+.+ ..+|++|++.+
T Consensus 354 -----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 354 -----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred -----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 123599999999999999999999999999999999999988632 12799998765
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
| +.|++|||.++... +.+.+.+.++....+ .++.++ .|++..||.+|
T Consensus 429 f-~~Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig 475 (582)
T PRK11176 429 F-NDTIANNIAYARTE------------------------QYSREQIEEAARMAY------AMDFIN--KMDNGLDTVIG 475 (582)
T ss_pred e-cchHHHHHhcCCCC------------------------CCCHHHHHHHHHHhC------cHHHHH--hcccccCceeC
Confidence 5 58999999875210 011111211111111 112222 36778899999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+. ...||||||||++|||||+++|++|+|||||+++|.+....+.+.+... +.|+|++ +|.. ...+.||+|++|+
T Consensus 476 ~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~V-tHr~-~~~~~~D~Ii~l~ 552 (582)
T PRK11176 476 EN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRL-STIEKADEILVVE 552 (582)
T ss_pred CC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-ecch-HHHHhCCEEEEEE
Confidence 74 5679999999999999999999999999999998887777766665543 3455555 4554 5667899999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|+++++.+
T Consensus 553 ~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 553 DGEIVERGTHAELLA 567 (582)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998853
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=294.95 Aligned_cols=196 Identities=17% Similarity=0.133 Sum_probs=144.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC----CCC-----------------------ceeeecCCc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-----------------------NRCDISQHD 222 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~----~~~-----------------------~~~~v~q~d 222 (521)
...+|+||||+|.+||+++|+|+||||||||+++|+|++++ +.+ ..+||+|+.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 34699999999999999999999999999999999999863 210 135778875
Q ss_pred c--ccCCCCHHHHHHHHHHhccC-chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc
Q 044321 223 V--HIGEMTVRETLAFSARCQGV-GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA 299 (521)
Q Consensus 223 ~--~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 299 (521)
. +.+.+||.+++.+....... +.. .. . ..+....+.++|+.+||.+..
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~----------------~~--~-----------~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRW----------------WQ--R-----------FGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccc----------------cc--c-----------HHHHHHHHHHHHHHCCCCChH
Confidence 4 45678888887653211000 000 00 0 001123456789999997532
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcC
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D 376 (521)
+ +.+.++..|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .++++|+++|+...+.++||
T Consensus 150 ~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 150 D--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred H--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 1 112344569999999999999999999999999999988776666555554432 25677778899999999999
Q ss_pred eEEEEeCCEEEEecCHhHHH
Q 044321 377 DIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~ 396 (521)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=283.01 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=144.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 3699999999999999999999999999999999998754 111 13788888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ +|+.||+.|.....+.... .+....+..+++.+||.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhh
Confidence 66 8999999876433221000 001123455778888742 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.++++++|+..++.++||+++
T Consensus 143 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~ 217 (251)
T PRK14270 143 K-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTA 217 (251)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEE
Confidence 3 34569999999999999999999999999999998887777766666543 23566667788888899999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 218 FFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998873
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=285.73 Aligned_cols=189 Identities=26% Similarity=0.346 Sum_probs=150.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 4699999999999999999999999999999999999876521 136888887677789999
Q ss_pred HHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
||+.++.. ..... . .+ ..+....+..+++.+||.+..++.++ .
T Consensus 94 e~l~~~~~~~~~~~----------------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 137 (256)
T TIGR03873 94 DVVALGRIPHRSLW----------------A-GD--------------SPHDAAVVDRALARTELSHLADRDMS-----T 137 (256)
T ss_pred HHHHhcchhhhhhc----------------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCcc-----c
Confidence 99987521 00000 0 00 00011235668889999877776665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|+++||||||+++|....+.+.+++.+. .+++||+++|+...+.++||+|++|++|++++
T Consensus 138 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 9999999999999999999999999999999888777777766544 35667777888889999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+.+++
T Consensus 218 ~g~~~~~ 224 (256)
T TIGR03873 218 AGPPREV 224 (256)
T ss_pred ecCHHHh
Confidence 9998876
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=285.71 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=144.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+...
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 3599999999999999999999999999999999998864 211 12678887666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||.||+.|.....+.... . .+....+..+++.+||.+......
T Consensus 112 ~~-~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FP-KSIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CC-CcHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 66 4999999876432211000 0 001123466788889864211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|......+.+++... .+.+||+++|+...+..+||++++|++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 1234569999999999999999999999999999998887777776666543 235666677888888899999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14235 238 GNLVEVGDTEKMF 250 (267)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988763
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=288.65 Aligned_cols=186 Identities=19% Similarity=0.247 Sum_probs=144.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------------ceeeecCCcc-ccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------------NRCDISQHDV-HIG 226 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------------~~~~v~q~d~-~~~ 226 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+.. .+.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 599999999999999999999999999999999999876421 1257777642 233
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
..|+.||+.|.....+... .+....++.+++.++|. +..++.++
T Consensus 105 ~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~~- 149 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKRSPF- 149 (289)
T ss_pred hhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcCChh-
Confidence 4688888877532211100 00112345678889995 55665554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|+
T Consensus 150 ----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~ 225 (289)
T PRK13645 150 ----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225 (289)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999998888777776655433 25667777888888999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 226 ~G~i~~~g~~~~~~ 239 (289)
T PRK13645 226 EGKVISIGSPFEIF 239 (289)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988874
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=317.13 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+.+|+.++++.+++.. ..........+++|+|+++.++
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~~--------~~~~~~~~~~~i~~~~v~f~y~---------------------------- 351 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQY--------GNDDRPLQSGRIDIDNVSFAYR---------------------------- 351 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCccC--------CCCccCCCCCeEEEEEEEEEeC----------------------------
Confidence 4566778888888876554310 0000111123689999999862
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
....+|+|+||+|++|+.++|+|+||||||||+++|+|+++|..+ ..+||+|++.+
T Consensus 352 -----~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 352 -----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred -----CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 112599999999999999999999999999999999999988632 12899998776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|+ .|+++||.++.. . . .+...++....+ .++.++ .|++..||.+|
T Consensus 427 F~-~Ti~~NI~~~~~---~-~----------------------d~~i~~a~~~~g------l~~~i~--~lp~Gldt~i~ 471 (592)
T PRK10790 427 LA-DTFLANVTLGRD---I-S----------------------EEQVWQALETVQ------LAELAR--SLPDGLYTPLG 471 (592)
T ss_pred cc-chHHHHHHhCCC---C-C----------------------HHHHHHHHHHcC------cHHHHH--hcccccccccc
Confidence 65 599999998631 1 0 011111111000 111222 26677899998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ ....||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... ++|+|+++ |.. .....||+|++|+
T Consensus 472 e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivt-Hr~-~~l~~~D~ii~l~ 548 (592)
T PRK10790 472 E-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIA-HRL-STIVEADTILVLH 548 (592)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEe-cch-HHHHhCCEEEEEE
Confidence 7 45679999999999999999999999999999998888777776666543 45666555 444 5566799999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|+++++++
T Consensus 549 ~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 549 RGQAVEQGTHQQLLA 563 (592)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999999853
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=293.83 Aligned_cols=203 Identities=21% Similarity=0.291 Sum_probs=153.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~---------------------~~~~~v~q~d~~ 224 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+..+ .. ...+|++|+...
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3599999999999999999999999999999999998752 11 123788898766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+ ..|++||+.|+....+... .+ .....+..+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 5 5899999998643211100 00 001123456777777554444554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+..|||||||||+|||||+.+|+||||||||+++|....+.+.+.+... ...++++++|....+.++||+|++|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 356679999999999999999999999999999998887777776666543 345667777888888999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|++++.|+++++. ..|....+.+|+
T Consensus 300 G~i~e~g~~~~l~--------~~~~~~~~~~~~ 324 (329)
T PRK14257 300 GWIEEAGETKTIF--------IHPKNKRTKDYI 324 (329)
T ss_pred CEEEEeCCHHHHh--------cCCCcHHHHHHh
Confidence 9999999999984 455554444444
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=287.23 Aligned_cols=194 Identities=24% Similarity=0.285 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---C------------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---K------------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---~------------------------~~~~v~q~d~ 223 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|+++|+. + ..+|++|+..
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 469999999999999999999999999999999999987531 0 1278889888
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+++.+||.||+.+....... ..... ... ...+....+..+++.+||.+..++.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~-----~~~~~------~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP-----FWRTC------FSW---------------FTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc-----chhhh------ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 88889999999875321000 00000 000 00011224567899999987777666
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+|++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5 59999999999999999999999999999999888777777766543 256777778888889999999999
Q ss_pred EeCCEEEEecCHhHH
Q 044321 381 ISNGHIVYQGPREYV 395 (521)
Q Consensus 381 L~~G~iv~~G~~~~v 395 (521)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=287.30 Aligned_cols=190 Identities=23% Similarity=0.306 Sum_probs=149.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+|+.
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 4699999999999999999999999999999999999876421 137888988888889999
Q ss_pred HHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+|+.+..... ..... .. ......++.+++.+||.+..++.+. .
T Consensus 100 ~~~~~~~~~~~~~~~~-------------------~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (265)
T PRK10253 100 ELVARGRYPHQPLFTR-------------------WR------------KEDEEAVTKAMQATGITHLADQSVD-----T 143 (265)
T ss_pred HHHHhCcccccccccC-------------------CC------------HHHHHHHHHHHHHcCCHHHhcCCcc-----c
Confidence 9997752100 00000 00 0011235678889999876666554 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++.++||++++|++|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999888777666665443 2566777788888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 224 ~~g~~~~~~ 232 (265)
T PRK10253 224 AQGAPKEIV 232 (265)
T ss_pred EeCCHHHHh
Confidence 999988764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=273.24 Aligned_cols=188 Identities=28% Similarity=0.387 Sum_probs=147.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|++||++++|||+++|+||||||||||||+|+|.+.|+.+ ..+.++|+..+-+..||
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 34799999999999999999999999999999999999987632 12667888777778899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+|-+.++..-.+.+... .+...+++.+|...++.+.+... ...
T Consensus 93 ~eVV~mGr~p~~~g~~~--------------------------------~e~~~i~~~ala~~d~~~la~R~-----y~~ 135 (259)
T COG4559 93 QEVVQMGRIPHRSGREP--------------------------------EEDERIAAQALAATDLSGLAGRD-----YRT 135 (259)
T ss_pred HHHHHhcccccccCCCc--------------------------------hhhHHHHHHHHHHcChhhhhccc-----hhh
Confidence 99999876433221110 01223456678888888776543 356
Q ss_pred CChHHHHHHHHHHHHcC------CCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 311 ISGGQRKRVTTGEMLVG------PAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~------~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
|||||||||.+||.|+. .+++|||||||+++|.. +++..+++++ .+..|+.+.|+.+.+..+||+|++
T Consensus 136 LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~--~g~~V~~VLHDLNLAA~YaDrivl 213 (259)
T COG4559 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVL 213 (259)
T ss_pred cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh--cCCcEEEEEccchHHHHhhheeee
Confidence 99999999999999974 44699999999987764 4555556554 335555667899999999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|+++..|++++++
T Consensus 214 l~~Grv~a~g~p~~vl 229 (259)
T COG4559 214 LHQGRVIASGSPQDVL 229 (259)
T ss_pred eeCCeEeecCCHHHhc
Confidence 9999999999999885
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=282.25 Aligned_cols=204 Identities=18% Similarity=0.234 Sum_probs=151.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----C---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----K---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|.. + ..+|++|+...
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999987641 0 13688888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.||+.|.....+.... .+....++.+++.+||.+......
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FP-KSIFDNVAFGPRMLGTTAQ---------------------------------SRLDEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred Cc-CcHHHHHhhHHHhcCCChh---------------------------------hHHHHHHHHHHHHhCCchhhhhHh-
Confidence 76 4999999886432211000 000112344566667643211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+|||||+.+|++|||||||+++|......+.+++... .+.+|++++|+...+.++||++++|++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLT 221 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence 2345569999999999999999999999999999999988777777666543 345667778888899999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|++++.|+++++. ..|....+.+|+.
T Consensus 222 G~i~~~~~~~~~~--------~~~~~~~~~~~~~ 247 (251)
T PRK14249 222 GDLVEYGRTGEIF--------SRPRDKRTEDYIT 247 (251)
T ss_pred CeEEEeCCHHHHH--------hCCCChHHHHHHh
Confidence 9999999988873 3444444555553
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=283.53 Aligned_cols=191 Identities=18% Similarity=0.251 Sum_probs=143.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++. |. .+ ..+|++|+..+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 369999999999999999999999999999999999875 21 11 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++. ||.||+.|.....+.... .+....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-
Confidence 664 999999876432211000 001123456777888753211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+.++|+++|+.+.+.++||++++|++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 229 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM 229 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 2234569999999999999999999999999999998888777776666543 245666677888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++..|+++++.
T Consensus 230 G~i~~~g~~~~~~ 242 (259)
T PRK14274 230 GELVECNDTNKMF 242 (259)
T ss_pred CEEEEECCHHHHh
Confidence 9999999999874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=281.12 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=146.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC---CCCC-------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD---SSLK-------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~---~~~~-------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++ |..+ ..+|++|+...++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 469999999999999999999999999999999999874 2211 1278888877665 7
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|++||+.+.....+..... ......+..+++.+||........ +..+
T Consensus 94 tv~eni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNK--------------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccCh--------------------------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 9999998864322110000 001123456788889853211111 2344
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
+.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .++++++++|+..++.++||+|++|++|+++
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 579999999999999999999999999999999888777777766543 3566777788888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 221 ~~g~~~~~~ 229 (246)
T PRK14269 221 EFGESKEFF 229 (246)
T ss_pred EECCHHHHH
Confidence 999988763
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=277.68 Aligned_cols=177 Identities=22% Similarity=0.342 Sum_probs=140.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~lT 229 (521)
+.+|+++||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+|
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 4699999999999999999999999999999999999876421 1268888887888899
Q ss_pred HHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
+.||+.+... ..+... .+....+..+++.+||.+..++.+.
T Consensus 93 ~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 134 (213)
T cd03262 93 VLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYPA---- 134 (213)
T ss_pred HHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCcc----
Confidence 9999987532 111000 0011234667888999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+..++.++||++++|++|++
T Consensus 135 -~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 135 -QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred -ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 59999999999999999999999999999999888777776666543 345666778888889999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=314.92 Aligned_cols=232 Identities=21% Similarity=0.290 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+++|+.++++.+++. ... ...........++|+|+++.+..
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~-----~~~-~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 350 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEV-----TFP-TTSTAAADQVSLTLNNVSFTYPD--------------------------- 350 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-----CCC-cccCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 456677888888888766541 000 00001112346999999998621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+++.+|+|+||+|+||+.++|+||||||||||+++|+|+++|+.+ ..+|++|+..+
T Consensus 351 -----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 425 (574)
T PRK11160 351 -----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425 (574)
T ss_pred -----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh
Confidence 123599999999999999999999999999999999999988632 12789998755
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC------Ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL------DVC 298 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL------~~~ 298 (521)
| ..|++||+.++.. +.+.+. +..+++.+|+ ++.
T Consensus 426 f-~~ti~~Ni~~~~~-------------------------~~~~~~---------------i~~al~~~~l~~~i~~p~G 464 (574)
T PRK11160 426 F-SATLRDNLLLAAP-------------------------NASDEA---------------LIEVLQQVGLEKLLEDDKG 464 (574)
T ss_pred h-cccHHHHhhcCCC-------------------------ccCHHH---------------HHHHHHHcCCHHHHcCccc
Confidence 5 5799999988531 011111 1122223332 567
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcC
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D 376 (521)
+||.+|+ .+..||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... ++|+|+++ |.... ...||
T Consensus 465 ldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiit-Hr~~~-~~~~d 541 (574)
T PRK11160 465 LNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMIT-HRLTG-LEQFD 541 (574)
T ss_pred cCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe-cChhH-HHhCC
Confidence 8999987 46679999999999999999999999999999998888777777666543 45555555 54444 45799
Q ss_pred eEEEEeCCEEEEecCHhHHHH
Q 044321 377 DIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~~ 397 (521)
+|++|++|++++.|+++++++
T Consensus 542 ~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 542 RICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999998853
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=285.30 Aligned_cols=188 Identities=22% Similarity=0.261 Sum_probs=146.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~ 225 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+. .++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 35799999999999999999999999999999999999876521 136778875 355
Q ss_pred CCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccc
Q 044321 226 GEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMV 303 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 303 (521)
+.+||.||+.+..... ... ..+....+..+++.+||. ...+..+
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~ 148 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADKLP 148 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 6789999987653211 000 001112356788999996 5566555
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++
T Consensus 149 ~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~ 223 (265)
T TIGR02769 149 R-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV 223 (265)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE
Confidence 4 59999999999999999999999999999998887655555554432 256677778888889999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|++++.|+++++.
T Consensus 224 l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 224 MDKGQIVEECDVAQLL 239 (265)
T ss_pred EeCCEEEEECCHHHHc
Confidence 9999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=326.12 Aligned_cols=240 Identities=22% Similarity=0.305 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCc--eeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT--IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
...++.+..+++++++..+.. .. -+..+...|. .+|+|+|++|.|.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i-----~~-~~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTI-----DP-DSTSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCC-----CC-CCCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 345677888999999887741 11 1123433443 4799999999973
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
...+..||+|+|++|++|+.+||+|||||||||.+.+|-.+++|..+ ..+.|.|++
T Consensus 999 -----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 999 -----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEP 1073 (1228)
T ss_pred -----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCc
Confidence 12456799999999999999999999999999999999999998632 127788887
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++|||.|+... + +.++.++++... ...+++ .+|++.+||.
T Consensus 1074 ~LF-~~TIrENI~YG~~~--v-----------------------s~~eIi~Aak~A-----NaH~FI---~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1074 VLF-NGTIRENIAYGSEE--V-----------------------SEEEIIEAAKLA-----NAHNFI---SSLPQGYDTR 1119 (1228)
T ss_pred hhh-cccHHHHHhccCCC--C-----------------------CHHHHHHHHHHh-----hhHHHH---hcCcCcccCc
Confidence 765 68999999998211 1 112223333222 134443 4699999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
||+ .+.+||||||||++|||||++||+||||||.||++|.+.-+.+++.+... ++|+|++.|. ..+.+.||.|+|
T Consensus 1120 vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHR--LSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1120 VGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHR--LSTIQNADVIAV 1196 (1228)
T ss_pred cCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecc--hhhhhcCCEEEE
Confidence 997 44579999999999999999999999999999999988888777776543 6778777655 467889999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
+++|+|+++|++++++.
T Consensus 1197 i~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1197 LKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EECCEEEecccHHHHHh
Confidence 99999999999999974
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.48 Aligned_cols=188 Identities=21% Similarity=0.274 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|. .+ ..+|++|+..+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 46999999999999999999999999999999999997642 00 13688888888
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++.+|+.||+.+.....+.... ++....+..+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR---------------------------------DHLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCcchhhhhhhc
Confidence 8889999999875432111000 00011233445555543 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. ++.|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. .++++++++|+...+.++||+|+
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 44 4569999999999999999999999999999999888777777766543 24667777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 219 FFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=278.37 Aligned_cols=176 Identities=27% Similarity=0.360 Sum_probs=138.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.. .++.+|+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 4699999999999999999999999999999999999876521 1268888753 4667899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+.....+... .+....++.+++.+||.+..++.++ .
T Consensus 94 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 134 (211)
T cd03225 94 EEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSPF-----T 134 (211)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCcc-----c
Confidence 999987543211100 0011234668889999876666654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++..+||+|++|++|+
T Consensus 135 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998888777776666443 25667777888888999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=277.28 Aligned_cols=176 Identities=22% Similarity=0.288 Sum_probs=141.5
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+|++||+.+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 99999999999999999999999999999999877531 1378899888888899999998753
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
....... .+....+.++++.+||.+..++.+. .||||||||
T Consensus 96 ~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (211)
T cd03298 96 SPGLKLT----------------------------------AEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQR 136 (211)
T ss_pred ccccCcc----------------------------------HHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHH
Confidence 2110000 0011235678899999877776654 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+..++.++||++++|++|++++.|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998887777776666543 2556667788888899999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=298.64 Aligned_cols=211 Identities=23% Similarity=0.311 Sum_probs=162.6
Q ss_pred CCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCCh
Q 044321 117 GISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSV 196 (521)
Q Consensus 117 g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSG 196 (521)
.+..+.-.|+|+|+++++. .+++||++|||+|++|+-+||+|+||||
T Consensus 344 ~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGsG 390 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGSG 390 (591)
T ss_pred CcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCCC
Confidence 4555666899999999972 2346999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 197 KTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 197 KSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
|||++|+|.++++.+.. ..+||||+.. +++-||.+|+.|+.
T Consensus 391 KSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~-LFndTIl~NI~YGn-------------------- 449 (591)
T KOG0057|consen 391 KSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSV-LFNDTILYNIKYGN-------------------- 449 (591)
T ss_pred HHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCccc-ccchhHHHHhhcCC--------------------
Confidence 99999999999874321 2389999765 55689999999873
Q ss_pred hcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCC
Q 044321 259 AAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS 338 (521)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPT 338 (521)
+....+.+.+++...+ ..|.+. .|++.++|.||+++ .-|||||||||+||||++.+|+|+++||||
T Consensus 450 -----~sas~eeV~e~~k~a~-----~hd~i~---~l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda~Il~~DEaT 515 (591)
T KOG0057|consen 450 -----PSASDEEVVEACKRAG-----LHDVIS---RLPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDAPILLLDEAT 515 (591)
T ss_pred -----CCcCHHHHHHHHHHcC-----cHHHHH---hccccchhhHhhcc-cccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence 2223333333333222 233333 48899999999844 459999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHH-c-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 339 NSTTFQIVNSLRQFIHI-L-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 339 s~~~~~i~~~L~~l~~~-~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
|++|.+.-..|.+.+.. . ++|+|+++|.. .+...||+|++|++|++...|++++++.
T Consensus 516 S~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 516 SALDSETEREILDMIMDVMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cccchhhHHHHHHHHHHhcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 98777655555444433 3 56777766543 5677899999999999999999999864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=281.08 Aligned_cols=190 Identities=22% Similarity=0.276 Sum_probs=142.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~~ 225 (521)
.+|+|+||+|++||+++|+|||||||||||++|+|++++ ..+ ..+|++|+...+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998642 110 126888877666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ +|+.+|+.+.....+.... ......++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH-h
Confidence 6 8999999876432221000 001123455677777642111111 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+.+|++++|+...+.++||++++|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 234569999999999999999999999999999999888777776666543 2456666778888899999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 222 ~i~~~~~~~~~~ 233 (250)
T PRK14240 222 EIVEFGDTVDLF 233 (250)
T ss_pred EEEEeCCHHHHH
Confidence 999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=285.26 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=152.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV 230 (521)
..+|+||||+|++|++++|+|+||||||||+++|+|+++|..+ ..+|++|+.. .++..||
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 3599999999999999999999999999999999999877532 1278888853 5777899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+.....+... .+....++.+++.+||.+..++.+. .
T Consensus 100 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (277)
T PRK13642 100 EDDVAFGMENQGIPR----------------------------------EEMIKRVDEALLAVNMLDFKTREPA-----R 140 (277)
T ss_pred HHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc-----c
Confidence 999987543211100 0011245678889999877766554 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. .+++|++++|+.+.+. .||+|++|++|+++
T Consensus 141 LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~ 219 (277)
T PRK13642 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII 219 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887777776665433 2556666778887775 69999999999999
Q ss_pred EecCHhHHHH---HHHHcCCCCCC
Q 044321 388 YQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 388 ~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
..|+++++.. .+...++.+|.
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~~~~~ 243 (277)
T PRK13642 220 KEAAPSELFATSEDMVEIGLDVPF 243 (277)
T ss_pred EeCCHHHHhcCHHHHHHCCCCCCH
Confidence 9999988752 22334555543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=280.55 Aligned_cols=190 Identities=19% Similarity=0.259 Sum_probs=143.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC--------------------ceeeecCCcccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK--------------------NRCDISQHDVHI 225 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~--------------------~~~~v~q~d~~~ 225 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|. .+ ..+|++|+...+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46999999999999999999999999999999999987752 10 126888887767
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ .||.||+.+.....+.... ......+..+++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK---------------------------------KVLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 8999999876432211000 001123345666777643211111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+||+||+.+|++|||||||+++|......+.+++++. ..++|++++|+..++.++||++++|++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 234569999999999999999999999999999999888777777766554 2356677778888899999999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++++.|+.+++
T Consensus 221 ~i~~~g~~~~~ 231 (249)
T PRK14253 221 ELVEHDDTQVI 231 (249)
T ss_pred EEEEeCCHHHH
Confidence 99999998876
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=284.54 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=143.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++++ +.+ ..+|++|+..+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 3699999999999999999999999999999999998752 210 13688888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.+.....+... .....+..+++.+++........
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG-----------------------------------DMDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH-----------------------------------HHHHHHHHHHHHhCCcchhhhhh-
Confidence 66 599999987653221100 00112344566676632111111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||++++|++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 2334569999999999999999999999999999999988887777776544 245677778888899999999999996
Q ss_pred -----------CEEEEecCHhHHH
Q 044321 384 -----------GHIVYQGPREYVL 396 (521)
Q Consensus 384 -----------G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccccccccceEEEeCCHHHHH
Confidence 6799999999884
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=280.86 Aligned_cols=188 Identities=22% Similarity=0.267 Sum_probs=141.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------------ceeeecCCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------------NRCDISQHD 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------------~~~~v~q~d 222 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 3699999999999999999999999999999999999876421 024555554
Q ss_pred c--ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cc
Q 044321 223 V--HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CA 299 (521)
Q Consensus 223 ~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~ 299 (521)
. +++.+|+.+|+.+........ + ..+....+.++++.+|+.. ..
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~----------------------~-----------~~~~~~~~~~~l~~~~l~~~~~ 145 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGAR----------------------H-----------YGDIRATAGDWLERVEIDAARI 145 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccC----------------------c-----------HHHHHHHHHHHHHHcCCChhHH
Confidence 2 344556666665432110000 0 0011224567889999964 45
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcC
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D 376 (521)
++.+ ..|||||||||+|||||+.+|++|||||||+++|....+.+.+++... .+.+||+++|+...+..+||
T Consensus 146 ~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d 220 (258)
T PRK11701 146 DDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH 220 (258)
T ss_pred hCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 5554 459999999999999999999999999999999888777776665432 25667777888888989999
Q ss_pred eEEEEeCCEEEEecCHhHHH
Q 044321 377 DIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~ 396 (521)
+|++|++|++++.|+++++.
T Consensus 221 ~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 221 RLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=278.98 Aligned_cols=185 Identities=25% Similarity=0.375 Sum_probs=149.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+|+.||+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 89999999999999999999999999999999999887532 2378899888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.....+... .+....+.++++.+||.+..++.+. .|||||
T Consensus 94 ~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (235)
T cd03299 94 YGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGE 134 (235)
T ss_pred HHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHH
Confidence 7643221100 0011234567888999877776664 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
||||+||+||+.+|++++|||||+++|....+.+.+++.+. .++++++++|+.+++.++||++++|++|++++.|++
T Consensus 135 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 214 (235)
T cd03299 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999998888777776655432 145666677888889999999999999999999998
Q ss_pred hHHH
Q 044321 393 EYVL 396 (521)
Q Consensus 393 ~~v~ 396 (521)
+++.
T Consensus 215 ~~~~ 218 (235)
T cd03299 215 EEVF 218 (235)
T ss_pred HHHH
Confidence 7764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=283.17 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=142.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-----CCCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-----SSLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-----~~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++. |+.+ ..+|++|+...
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 369999999999999999999999999999999999753 2210 13688888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ .|+.||+.+.......... ......+..+++.+++.. ..+
T Consensus 114 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FP-KSIYNNITHALKYAGERRK---------------------------------SVLDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Cc-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchHHHHh
Confidence 66 4999999876322110000 000112344667777742 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|+
T Consensus 160 ~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~ 234 (268)
T PRK14248 160 S-----SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTA 234 (268)
T ss_pred c-----CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999999988887777776544 23566777788888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 235 FFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988773
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=280.38 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=144.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++ | ..+ ..+|++|+..+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 369999999999999999999999999999999999985 2 110 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ .||+||+.+.....+.... ......++.+++.++|.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK---------------------------------ELIDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchHHHhc
Confidence 64 7999999876432211000 000123455777788842 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
. .+..||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+.++||+|+
T Consensus 143 ~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 143 R-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred c-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEE
Confidence 3 34569999999999999999999999999999999888777777766543 24567777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|+++..|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988773
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=302.69 Aligned_cols=203 Identities=26% Similarity=0.325 Sum_probs=152.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---Cce------------------------eeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---KNR------------------------CDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---~~~------------------------~~v~q~d~ 223 (521)
..+++||||+|.+||+++|+|.|||||||+.++|.|++++.. .+. ++|+|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 579999999999999999999999999999999999988652 111 45555432
Q ss_pred --ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 224 --HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 224 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+-|-+||..-+.=..+.++. ....+....+.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~---------------------------------~~~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGK---------------------------------GSRAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcc---------------------------------ccHHHHHHHHHHHHHHcCCCChhhh
Confidence 22334444333222211110 1123455677889999999986654
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
+.+++.|||||||||.||+||+.+|++||+||||+++|. ++.+.|+++.++ .++.+++++|+...+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 567889999999999999999999999999999997555 566666666544 467777788999999999999
Q ss_pred EEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 378 IILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 378 VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
|+||++|++|+.|++++++ ..|.+..+.-.+..
T Consensus 225 v~Vm~~G~iVE~G~~~~i~--------~~p~hpYT~~Ll~a 257 (539)
T COG1123 225 VVVMYKGEIVETGPTEEIL--------SNPQHPYTRGLLAA 257 (539)
T ss_pred EEEEECCEEEEecCHHHHH--------hccCCcccHHHHhh
Confidence 9999999999999999994 45665555544443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=278.15 Aligned_cols=184 Identities=32% Similarity=0.467 Sum_probs=141.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC---CCCC----------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD---SSLK----------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~---~~~~----------------~~~~v~q~d~~~~~lTV~ 231 (521)
+++|+|+||+|++|++++|+||||||||||+++|+|+++ |..+ ..+|++|+...++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 579999999999999999999999999999999999987 5421 237889988888899999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHH-HHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDY-ILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
||+.|.......... . .. ......+. +++.+++.+..++.+ +.
T Consensus 100 enl~~~~~~~~~~~~--------------------~-~~----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (226)
T cd03234 100 ETLTYTAILRLPRKS--------------------S-DA----------IRKKRVEDVLLRDLALTRIGGNLV-----KG 143 (226)
T ss_pred HHHHHHHHhhccccc--------------------c-hH----------HHHHHHHHHHHHhhcchhhhcccc-----cC
Confidence 999986543211000 0 00 00012233 788888877666555 45
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecCh-hHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPA-PETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~-~~~~~l~D~VivL~~G~iv 387 (521)
|||||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+. .++.++||++++|++|+++
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999998887777766666433 244555555665 5899999999999999999
Q ss_pred Eec
Q 044321 388 YQG 390 (521)
Q Consensus 388 ~~G 390 (521)
+.|
T Consensus 224 ~~g 226 (226)
T cd03234 224 YSG 226 (226)
T ss_pred ecC
Confidence 876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=278.02 Aligned_cols=182 Identities=20% Similarity=0.326 Sum_probs=146.2
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+.||+.+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 89999999999999999999999999999999876521 1378899888888899999998753
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.. ..... ......+.++++.+||.+..++.+. .||||||||
T Consensus 97 ~~-~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (232)
T PRK10771 97 NP-GLKLN---------------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQR 137 (232)
T ss_pred cc-ccCCC---------------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHH
Confidence 21 00000 0011235668899999877777665 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
|+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+..++.++||++++|++|++++.|+.+++
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999888776666655432 245666677888888999999999999999999998877
Q ss_pred H
Q 044321 396 L 396 (521)
Q Consensus 396 ~ 396 (521)
.
T Consensus 218 ~ 218 (232)
T PRK10771 218 L 218 (232)
T ss_pred H
Confidence 4
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=283.35 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=145.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc--ccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV--HIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~--~~~~lT 229 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+.. +++.+|
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 4699999999999999999999999999999999999877521 1256777653 456678
Q ss_pred HHHHHHHHHHhcc-CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 230 VRETLAFSARCQG-VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 230 V~E~l~f~~~~~~-~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
+.+++.+...... .. ..+....+..+++.+||. ...++.+
T Consensus 106 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 147 (267)
T PRK15112 106 ISQILDFPLRLNTDLE----------------------------------PEQREKQIIETLRQVGLLPDHASYYP---- 147 (267)
T ss_pred HHHHHHHHHHhccCCC----------------------------------HHHHHHHHHHHHHHcCCChHHHhcCc----
Confidence 8888776533210 00 001112456789999994 5555554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++|
T Consensus 148 -~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 148 -HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred -hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 459999999999999999999999999999999888777776665543 2566667778888899999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 227 ~i~~~~~~~~~~ 238 (267)
T PRK15112 227 EVVERGSTADVL 238 (267)
T ss_pred EEEecCCHHHHh
Confidence 999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.36 Aligned_cols=178 Identities=26% Similarity=0.333 Sum_probs=139.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~l 228 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 599999999999999999999999999999999999876421 136788887778889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... .+....+..+++.+||.+..++.+.
T Consensus 104 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 145 (228)
T PRK10584 104 NALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLPA---- 145 (228)
T ss_pred CHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCChh----
Confidence 99999987542211100 0012245678899999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+ +.||++++|++|+
T Consensus 146 -~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~~g~ 223 (228)
T PRK10584 146 -QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQ 223 (228)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCE
Confidence 59999999999999999999999999999999888777776666432 245566667777766 5599999999999
Q ss_pred EEEe
Q 044321 386 IVYQ 389 (521)
Q Consensus 386 iv~~ 389 (521)
+++.
T Consensus 224 i~~~ 227 (228)
T PRK10584 224 LQEE 227 (228)
T ss_pred EEec
Confidence 9753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=277.58 Aligned_cols=184 Identities=24% Similarity=0.354 Sum_probs=140.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCcccc--CCCCHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHI--GEMTVRETL 234 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~--~~lTV~E~l 234 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.... +.+||.||+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence 4699999999999999999999999999999999999877532 136888876542 348999999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+........ . .... ......++.+++.+||.+..++.++ .||||
T Consensus 92 ~~~~~~~~~~--~----------------~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 136 (213)
T cd03235 92 LMGLYGHKGL--F----------------RRLS------------KADKAKVDEALERVGLSELADRQIG-----ELSGG 136 (213)
T ss_pred Hhcccccccc--c----------------cCCC------------HHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHH
Confidence 8753211000 0 0000 0011245678899999876676654 59999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+..++.++||++++|++| +++.|
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999998888777766665443 3566777788888899999999999876 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=297.87 Aligned_cols=180 Identities=22% Similarity=0.330 Sum_probs=147.3
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCCCHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~lTV~E 232 (521)
||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 99999999999999999999999999999999876421 1268899888889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+..... . .+....++++++.+||.+..++.+. .||
T Consensus 95 nl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 133 (354)
T TIGR02142 95 NLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLPG-----RLS 133 (354)
T ss_pred HHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCChh-----hCC
Confidence 9988643110 0 0011235678899999887777664 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+.+++..+||+|++|++|++++.
T Consensus 134 gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999999999999999998887766666655432 245667778888899999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 214 g~~~~~~ 220 (354)
T TIGR02142 214 GPIAEVW 220 (354)
T ss_pred CCHHHHh
Confidence 9998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=278.70 Aligned_cols=187 Identities=27% Similarity=0.376 Sum_probs=150.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+|+.||
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 3699999999999999999999999999999999999876421 23788988888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... ......++.+++.+++....++.++ .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~ 133 (237)
T TIGR00968 93 IAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYPN-----QLSG 133 (237)
T ss_pred HHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCChh-----hCCH
Confidence 987643221100 0001134568888999776776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||+||++||++|+.+|+++||||||+++|....+.+.+++.+. .+.++++++|...++.++||++++|++|++++.|
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIG 213 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEec
Confidence 9999999999999999999999999999888777777666543 2456666677888889999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+.+++.
T Consensus 214 ~~~~~~ 219 (237)
T TIGR00968 214 SPDEVY 219 (237)
T ss_pred CHHHHH
Confidence 988774
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=280.98 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=146.0
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHHHHH
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAFSAR 239 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f~~~ 239 (521)
|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+||.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999877532 12688898888888999999987532
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV 319 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRv 319 (521)
...... .. .+....+..+++.+||.+..++.++ .|||||||||
T Consensus 81 ~~~~~~---------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 123 (230)
T TIGR01184 81 RVLPDL---------------------SK-----------SERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRV 123 (230)
T ss_pred hcccCC---------------------CH-----------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHH
Confidence 100000 00 0111235668899999877776665 5999999999
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||+|++|++|++++.|+..++
T Consensus 124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999999999998887777776665442 355667777888889999999999999999999865543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=266.22 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=161.3
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce----------------------------
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR---------------------------- 215 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~---------------------------- 215 (521)
+.++++...+|++||+..+.|+++.|+|.|||||||+|+||+-+..|+.+..
T Consensus 12 lHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred HHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 3566778899999999999999999999999999999999998877753110
Q ss_pred ----eeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHH
Q 044321 216 ----CDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291 (521)
Q Consensus 216 ----~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 291 (521)
+.|+|+..++.+|||.||+.-+.. ......+.+..++++.+|.
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPv---------------------------------hVLg~~k~ea~e~Ae~~L~ 138 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPV---------------------------------HVLGVSKAEAIERAEKYLA 138 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcch---------------------------------HhhcCCHHHHHHHHHHHHH
Confidence 566777777777777777644321 1111222333445677899
Q ss_pred HcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecC
Q 044321 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQP 367 (521)
Q Consensus 292 ~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~ 367 (521)
.+||.+..|.++. .|||||+||++|||||+..|+++++||||+++|++.+-. +++++.+ ++|+++ +||.
T Consensus 139 kVGi~ek~~~YP~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~-VTHE 211 (256)
T COG4598 139 KVGIAEKADAYPA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVV-VTHE 211 (256)
T ss_pred HhCchhhhhcCcc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEE-Eeee
Confidence 9999998887665 599999999999999999999999999999998876544 4555442 555555 5688
Q ss_pred hhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 368 APETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 368 ~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+..+.+...+|++|++|.|-++|+|+++ |..|.......|+.
T Consensus 212 M~FAR~Vss~v~fLh~G~iEE~G~P~qv--------f~nP~S~RlkqFls 253 (256)
T COG4598 212 MGFARDVSSHVIFLHQGKIEEEGPPEQV--------FGNPQSPRLKQFLS 253 (256)
T ss_pred hhHHHhhhhheEEeecceecccCChHHH--------hcCCCCHHHHHHHH
Confidence 8889999999999999999999999999 67788777777764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=278.46 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=141.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---C---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---L---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|.+|++++|+|||||||||||++|+|+++ |. . ...+|++|+...
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 369999999999999999999999999999999999864 21 0 113688888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ .|+.+|+.+.....+..... .....+...++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDKA---------------------------------VLDEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCHH---------------------------------HHHHHHHHHHHHcCCccchhhHHh
Confidence 76 79999998764322210000 0011223455666653 2233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
. .+..|||||||||+||++|+.+|++|||||||+++|....+.+.+++.+. ..+++|+++|+...+.++||+|+
T Consensus 144 ~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 144 E-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred c-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999998888777776666543 23566667788888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|+++..|++.++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 219 FFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988773
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=273.36 Aligned_cols=160 Identities=41% Similarity=0.678 Sum_probs=129.5
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC---CCCC------------------ceeeecCCccccCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD---SSLK------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~---~~~~------------------~~~~v~q~d~~~~~ 227 (521)
+++.+|+|+||+|++|++++|+||||||||||+++|+|+++ |..+ ..+|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 34579999999999999999999999999999999999987 3321 12678888878888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.++.... .+ ..
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------~~-----~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------GN-----EF 115 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------cc-----cc
Confidence 89999887642100 12 23
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. +.|+|+++||+.+++.++||++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 3469999999999999999999999999999998887666666655432 346677777877889999999999999
Q ss_pred CEEEEec
Q 044321 384 GHIVYQG 390 (521)
Q Consensus 384 G~iv~~G 390 (521)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=278.16 Aligned_cols=191 Identities=21% Similarity=0.298 Sum_probs=145.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++++ .. ...+|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3699999999999999999999999999999999998763 11 013678887776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ +|++||+.+.....+.... ......++++++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 66 8999999876432211000 00112345567777875321111 1
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..||||||||++||+||+.+|++|||||||+++|......+.+++.+. .++++++++|+...+..+||+|++|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2345579999999999999999999999999999999888777777666543 245677777888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++..|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14262 221 GELIEYGPTREIV 233 (250)
T ss_pred CEEEEecCHHHHH
Confidence 9999999988874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=282.58 Aligned_cols=205 Identities=22% Similarity=0.275 Sum_probs=152.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC--------------------ceeeecCCcccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK--------------------NRCDISQHDVHI 225 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~--------------------~~~~v~q~d~~~ 225 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++| ..+ ..+|++|+...+
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 4699999999999999999999999999999999999875 110 126888877666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ +|+++|+.+......... . .+....+..+++.+||....++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~----------------------~-----------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP----------------------R-----------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC----------------------H-----------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 6 899999987532211000 0 001113355778888865332221 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. ..++||+++|+.+++.++||++++|++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 234569999999999999999999999999999999888777776666543 2356677788888899999999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 385 HIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
++++.|+++++.+ .|.....++|+.+
T Consensus 239 ~i~~~g~~~~~~~--------~~~~~~~~~~~~~ 264 (276)
T PRK14271 239 RLVEEGPTEQLFS--------SPKHAETARYVAG 264 (276)
T ss_pred EEEEeCCHHHHHh--------CcCcHHHHHHHhh
Confidence 9999999988742 4444455555544
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=265.46 Aligned_cols=183 Identities=26% Similarity=0.356 Sum_probs=152.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
..+|+|||++|.+|+.++++||||||||||||+++|+.+|..+ ..+.|+|++.++|.+||.+|++|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 4599999999999999999999999999999999999988632 23789999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+.++.|+... +...++..++..+||.+..+.++- .||||||
T Consensus 98 gL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmr 138 (259)
T COG4525 98 GLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHKYIW-----QLSGGMR 138 (259)
T ss_pred HHHhcCCCHH----------------------------------HHHHHHHHHHHHhCcccccccceE-----eecchHH
Confidence 9998887432 112356678899999988776654 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe--CCEEEEec
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS--NGHIVYQG 390 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~--~G~iv~~G 390 (521)
|||.|||||+.+|++|+||||+.++|. ++...|.++.+..+ ..++.+||+.+++.-+++++++|+ .|+|+..-
T Consensus 139 QRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~ 217 (259)
T COG4525 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGRVVERL 217 (259)
T ss_pred HHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCceeeEec
Confidence 999999999999999999999996554 45555555555444 445556789999999999999998 48999887
Q ss_pred CHh
Q 044321 391 PRE 393 (521)
Q Consensus 391 ~~~ 393 (521)
+++
T Consensus 218 ~~d 220 (259)
T COG4525 218 PLD 220 (259)
T ss_pred CCC
Confidence 766
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=282.83 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=141.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++.+ ..+ ..+|++|+...
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 3699999999999999999999999999999999998752 110 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ .||.+|+.+.....+... . ....+..+++.+++. +..+
T Consensus 113 ~~-~tv~~nl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 113 FP-KSIYENIAFAPRANGYKG------N-----------------------------LDELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred cc-ccHHHHHHhHHHhcCchH------H-----------------------------HHHHHHHHHHHcccchhhHHHhc
Confidence 65 499999987543211100 0 001123355666653 2233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+...+.++||+++
T Consensus 157 ~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 157 E-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231 (274)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999999988888877777554 24667777888889999999999
Q ss_pred EEe---------CCEEEEecCHhHHH
Q 044321 380 LIS---------NGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~---------~G~iv~~G~~~~v~ 396 (521)
+|+ +|++++.|+++++.
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEecccccccccCceEEEeCCHHHHH
Confidence 998 89999999999884
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=279.71 Aligned_cols=187 Identities=20% Similarity=0.224 Sum_probs=143.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|+||||||||+++|+|+++++ .+ ..+|++|+...
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 35999999999999999999999999999999999987631 10 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ +|+.||+.+.....+.... .+....+..+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAKLPQ---------------------------------ADLDEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCcchhhhHhc
Confidence 76 8999999876432110000 00112344567777773 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+|||||+.+|++|||||||+++|......+.+++... ...+|++++|+.+++.++||+++
T Consensus 146 ~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~ 220 (259)
T PRK14260 146 K-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTA 220 (259)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEE
Confidence 3 34569999999999999999999999999999999887777776666543 23566677788899999999999
Q ss_pred EEe-----CCEEEEecCHhHHH
Q 044321 380 LIS-----NGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~-----~G~iv~~G~~~~v~ 396 (521)
+|+ +|++++.|+++++.
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEeccCCCCceEEEeCCHHHHh
Confidence 998 59999999999873
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=339.27 Aligned_cols=239 Identities=22% Similarity=0.273 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCC---C--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGIS---L--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFL 158 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~---~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l 158 (521)
.+.++.+.+|+.++++..++. ... +..+.. . ....|+|+||+|.|..
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~-----~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------- 1177 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNI-----DVR-DNGGIRIKNKNDIKGKIEIMDVNFRYIS---------------------- 1177 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcC-----CCC-CCcccccccCCCCCceEEEEEEEEECCC----------------------
Confidence 567778889999988765431 000 011111 1 1246999999999731
Q ss_pred hhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---------------------------
Q 044321 159 NSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS--------------------------- 211 (521)
Q Consensus 159 ~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~--------------------------- 211 (521)
....+||+||||+|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1178 ---------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1178 ---------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred ---------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 11236999999999999999999999999999999999999972
Q ss_pred --------------------------CCc--------------------eeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 212 --------------------------LKN--------------------RCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 212 --------------------------~~~--------------------~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..+ .+||+|++.+| ..|++|||.|+..
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~------ 1321 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE------ 1321 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC------
Confidence 111 17899987554 7999999998621
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
+.+.+.+.+++...+ ..+.+ ..|++.+||.||+ .+..||||||||++|||||
T Consensus 1322 -------------------~at~eeI~~A~k~A~-----l~~fI---~~LP~GydT~VGe-~G~~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1322 -------------------DATREDVKRACKFAA-----IDEFI---ESLPNKYDTNVGP-YGKSLSGGQKQRIAIARAL 1373 (1466)
T ss_pred -------------------CCCHHHHHHHHHHcC-----CHHHH---HhCccccCCccCC-CCCcCCHHHHHHHHHHHHH
Confidence 112222222222211 12332 2489999999996 5567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcCeEEEEeC----CEEE-EecCHhHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDIILISN----GHIV-YQGPREYVL 396 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D~VivL~~----G~iv-~~G~~~~v~ 396 (521)
+++|+||||||||+++|.+..+.+.+.+... +.|+|+++ |.. .+.+.||+|++|++ |+++ +.|++++++
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa-HRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA-HRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe-chH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999998887777776665543 45555554 544 56678999999999 9965 899999985
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=280.96 Aligned_cols=190 Identities=21% Similarity=0.320 Sum_probs=149.7
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------------ceeeecCCcc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------NRCDISQHDV 223 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------~~~~v~q~d~ 223 (521)
+++.+|+||||+|.+|++++|+||||||||||+++|+|+++|..+ ..+|++|+..
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 445799999999999999999999999999999999999876421 1268888888
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----cc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CA 299 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~ 299 (521)
+++.+|+.+|+.+.....+.... .+....+.++++.+|+.. ..
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~ 147 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEK---------------------------------REIKKIVEECLRKVGLWKEVYDRL 147 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCccchhhh
Confidence 88889999999886432111000 001123566788888853 33
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeE
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~V 378 (521)
+. .+..||||||||++|||||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+...+..+||++
T Consensus 148 ~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v 222 (257)
T PRK14246 148 NS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYV 222 (257)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEE
Confidence 43 34569999999999999999999999999999999888777777776543 2356667778888888999999
Q ss_pred EEEeCCEEEEecCHhHHH
Q 044321 379 ILISNGHIVYQGPREYVL 396 (521)
Q Consensus 379 ivL~~G~iv~~G~~~~v~ 396 (521)
++|++|+++..|+++++.
T Consensus 223 ~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 223 AFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=284.10 Aligned_cols=191 Identities=27% Similarity=0.319 Sum_probs=147.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC--------CC-------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS--------LK-------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~--------~~-------------------~~~~v~q~d~ 223 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|. .+ ..+|++|+..
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999998774 21 1267888766
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
.++.+||.||+.+......... +.. . .+....+..+++.+||.+..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~---------------~~~---~------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRA---------------GAL---T------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccccc---------------ccC---C------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 5667999999987521100000 000 0 001123566888999987666555
Q ss_pred cCccCCCCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHH
Q 044321 304 GDEILRGISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPET 371 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~ 371 (521)
+ .|||||||||+||+||+ .+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~ 218 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA 218 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 4 59999999999999999 599999999999998887777776665442 245666777888888
Q ss_pred HhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 372 YDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 372 ~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
.++||++++|++|++++.|+++++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 8999999999999999999988763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=306.80 Aligned_cols=237 Identities=21% Similarity=0.268 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+.+|+.++++.+.+.. +....+.+...++|+|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~~--------~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSRD--------PAMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCcccc--------CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 4777888899999887655420 00111112346999999998621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+++++|+|+||+|++|+.++|+||||||||||+++|+|+++|..+ ..+|++|++.+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 123689999999999999999999999999999999999987632 12789998766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|++||+.+... +.+.+....+.... ..++.++ .|++..||.+|
T Consensus 404 f~-~ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~------~~~~~i~--~l~~gl~t~~~ 449 (544)
T TIGR01842 404 FP-GTVAENIARFGE-------------------------NADPEKIIEAAKLA------GVHELIL--RLPDGYDTVIG 449 (544)
T ss_pred cc-ccHHHHHhccCC-------------------------CCCHHHHHHHHHHh------ChHHHHH--hCccccccccC
Confidence 65 599999975321 00111111111100 1223333 34566788887
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ ....||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+... .+.++++++|+.. ..+.||+|++|+
T Consensus 450 ~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~-~~~~~d~i~~l~ 527 (544)
T TIGR01842 450 P-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS-LLGCVDKILVLQ 527 (544)
T ss_pred C-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-HHHhCCEEEEEE
Confidence 6 46789999999999999999999999999999998887777776665543 3344444455554 567899999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 528 ~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 528 DGRIARFGERDEVL 541 (544)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=277.09 Aligned_cols=185 Identities=20% Similarity=0.229 Sum_probs=143.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC----CCC-----------------ceeeecCCcc--ccCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-----------------NRCDISQHDV--HIGEMT 229 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~----~~~-----------------~~~~v~q~d~--~~~~lT 229 (521)
+|+||||+|++|++++|+||||||||||+++|+|+++| +.+ ..+|++|+.. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999887 321 1267777753 445678
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc---cccccccCc
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV---CADTMVGDE 306 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg~~ 306 (521)
+.+++.+.....+... .+....+.++++.+||.+ ..++.+
T Consensus 81 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 123 (230)
T TIGR02770 81 MGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPEEVLKKYP--- 123 (230)
T ss_pred HHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchHHHHhCCh---
Confidence 8888876532211100 001124567889999973 344444
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++..+||++++|++
T Consensus 124 --~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 124 --FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999998887766666655432 256677778888889999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 202 G~i~~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIVERGTVKEIF 214 (230)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.64 Aligned_cols=183 Identities=23% Similarity=0.294 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+..+++.+||
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 4699999999999999999999999999999999999877521 13688998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.|.... . .+....+.++++.+||.+..++.++ .
T Consensus 104 ~e~l~~~~~~----~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (510)
T PRK15439 104 KENILFGLPK----R----------------------------------QASMQKMKQLLAALGCQLDLDSSAG-----S 140 (510)
T ss_pred HHHhhccccc----c----------------------------------hHHHHHHHHHHHHcCCCccccCChh-----h
Confidence 9999875210 0 0011235668899999887777665 4
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+.++||+|++|++|++++
T Consensus 141 LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 141 LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999887777766665443 35667778899889999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 221 ~g~~~~~~ 228 (510)
T PRK15439 221 SGKTADLS 228 (510)
T ss_pred ecChHHcC
Confidence 99987763
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=280.72 Aligned_cols=191 Identities=20% Similarity=0.237 Sum_probs=143.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++++ ..+ ..+|++|+...
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 3699999999999999999999999999999999999763 211 12688887776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++. |+.||+.+.....+.... ......++++++.+++.....+..
T Consensus 118 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 162 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQGINNR---------------------------------RVLDEAVERSLRGAALWDEVKDRL- 162 (272)
T ss_pred Ccc-cHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChhHHHHh-
Confidence 765 999999876432211000 000123455677777753211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+..++.++||+|++|++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 2334569999999999999999999999999999999888777777666543 235666677888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 243 G~i~~~g~~~~~~ 255 (272)
T PRK14236 243 GKLVEYGDTDTLF 255 (272)
T ss_pred CEEEecCCHHHHh
Confidence 9999999988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=279.47 Aligned_cols=190 Identities=21% Similarity=0.234 Sum_probs=143.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~~ 225 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+ .+ ..+|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 5999999999999999999999999999999999998763 10 125667766666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ +|+.||+.+.....+.... .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 6 8999998775322111000 001123456778888754221111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..+..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++.++||+|++|+
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 344569999999999999999999999999999999888777766665442 35666667788889999999999999
Q ss_pred C-----CEEEEecCHhHHH
Q 044321 383 N-----GHIVYQGPREYVL 396 (521)
Q Consensus 383 ~-----G~iv~~G~~~~v~ 396 (521)
+ |++++.|+++++.
T Consensus 226 ~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 226 GNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred cCCCcCceEEEeCCHHHHH
Confidence 9 9999999999884
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=276.54 Aligned_cols=186 Identities=23% Similarity=0.265 Sum_probs=142.1
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeec-------C-CccccCCCCHHHHHHH
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS-------Q-HDVHIGEMTVRETLAF 236 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~-------q-~d~~~~~lTV~E~l~f 236 (521)
..+++.+++|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..++. + ...+.+.+||.||+.+
T Consensus 29 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~tv~enl~~ 107 (224)
T cd03220 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPELTGRENIYL 107 (224)
T ss_pred hhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCCCcHHHHHHH
Confidence 4455667899999999999999999999999999999999999887532 22221 1 2335567899999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.....+... .+....+..+++.+||.+..++.++ .||||||
T Consensus 108 ~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~ 148 (224)
T cd03220 108 NGRLLGLSR----------------------------------KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMK 148 (224)
T ss_pred HHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHH
Confidence 643211100 0011234567888999887777665 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||++++|++|++++.|
T Consensus 149 qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999998887655555544332 3456677788888889999999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=282.46 Aligned_cols=187 Identities=20% Similarity=0.300 Sum_probs=144.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~---------------------~~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+.. | .. ...+|++|+...
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 359999999999999999999999999999999999753 2 21 013688888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ .||.||+.|.....+.... ......+..+++.+|+. +..+
T Consensus 132 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FP-KSIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Cc-cCHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhhHhh
Confidence 66 4999999886432211000 00112344567777763 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. +..|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. ++.+||+++|+..++.++||+++
T Consensus 178 ~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~ 252 (286)
T PRK14275 178 KN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTM 252 (286)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 33 4569999999999999999999999999999999988887777776554 33567777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 253 ~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 253 FFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988873
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=273.19 Aligned_cols=180 Identities=20% Similarity=0.276 Sum_probs=143.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+++|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+.||+.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 45799999999999999999999999999999999877521 1368899888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+....... .. .+....++++++.+||.+..++.+. .|||||
T Consensus 93 ~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (213)
T TIGR01277 93 LGLHPGLK-LN---------------------------------AEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQ 133 (213)
T ss_pred hHhhccCC-cc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHH
Confidence 75321000 00 0011234668899999877776654 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||||+||+||+.+|+++||||||+++|....+.+.+++.+. .+++|++++|+..++.++||++++|++|++++.|.
T Consensus 134 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999998888777666655443 25677777888888889999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=302.27 Aligned_cols=204 Identities=30% Similarity=0.360 Sum_probs=155.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce---------------------eeecCC--ccccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR---------------------CDISQH--DVHIG 226 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~---------------------~~v~q~--d~~~~ 226 (521)
...+++||||+|++||+++|+|+||||||||.++|+|+++|+.+.. -+|+|+ ..+.|
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 4579999999999999999999999999999999999998853211 233333 34566
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.+||.+++.-......... ..+.+++++++|+.+||+.. ..++
T Consensus 383 r~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~----~l~r 425 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE----FLDR 425 (539)
T ss_pred cccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----HHhc
Confidence 7777777766544322110 12233467889999999852 2335
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
++.+|||||||||+|||||+.+|++|++||||+.+| .++.+.|+++.+++ +.+.++++|+...+..+||+|++|+
T Consensus 426 yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv~vm~ 504 (539)
T COG1123 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMY 504 (539)
T ss_pred CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceEEEEE
Confidence 566799999999999999999999999999999655 56666666665554 4556667899999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 383 NGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+|+||+.|+.+++ |..|.+..+..++..+
T Consensus 505 ~G~iVE~G~~~~v--------~~~p~h~Ytr~L~~av 533 (539)
T COG1123 505 DGRIVEEGPTEKV--------FENPQHPYTRKLLAAV 533 (539)
T ss_pred CCeEEEeCCHHHH--------hcCCCChHHHHHHHhc
Confidence 9999999999988 5677776665555443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=294.50 Aligned_cols=237 Identities=23% Similarity=0.317 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.|..-.-+|++++++++++| +.+....-....++..|.|+|++|.++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~---------------------------- 548 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYD---------------------------- 548 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecC----------------------------
Confidence 56666778999999999988 444433334445677999999999973
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
.++++|+||||++.||+.+||+||||+||||+|++|-.+.+.+.+ ..+.|||+..+
T Consensus 549 -----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 549 -----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred -----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 345799999999999999999999999999999999998875421 12677886655
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++-|+..||.|+ +|.+..+++..++..+ .+.|. ++++++.++|+||
T Consensus 624 -FNdTI~yNIrya-------------------------k~~AsneevyaAAkAA-----~IHdr---Il~fPegY~t~VG 669 (790)
T KOG0056|consen 624 -FNDTILYNIRYA-------------------------KPSASNEEVYAAAKAA-----QIHDR---ILQFPEGYNTRVG 669 (790)
T ss_pred -ecceeeeheeec-------------------------CCCCChHHHHHHHHHh-----hHHHH---HhcCchhhhhhhh
Confidence 457888888875 3344444444433222 23444 5679999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
++..+ |||||||||+|||+++..|.+++|||.|++ +..+|...|.+++. ++|+|++.|.- .+.-.+|.|++
T Consensus 670 ERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ILv 744 (790)
T KOG0056|consen 670 ERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADLILV 744 (790)
T ss_pred hcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccEEEE
Confidence 86554 999999999999999999999999999995 55677777777764 68888877653 35557999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
+++|+|++.|.+++++.
T Consensus 745 i~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLK 761 (790)
T ss_pred EeCCeEeecCcHHHHHh
Confidence 99999999999999864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=276.20 Aligned_cols=192 Identities=19% Similarity=0.259 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+.. | ..+ ..+|++|+...
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999875 2 111 12688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++. |+.||+.+........... ......+..+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 664 9999988763221110000 001123456788899865322222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+...+.++||+|++|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEEC
Confidence 1234569999999999999999999999999999998887777776666543 245667777888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 224 G~i~~~~~~~~~~ 236 (251)
T PRK14244 224 GRIVEYNTTQEIF 236 (251)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=308.47 Aligned_cols=190 Identities=22% Similarity=0.318 Sum_probs=150.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 4699999999999999999999999999999999999877421 13688998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+......... . +. .+....+.++++.+||.+..+..++ .
T Consensus 97 ~e~l~~~~~~~~~~~~------~-------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 141 (501)
T PRK10762 97 AENIFLGREFVNRFGR------I-------------DW-----------KKMYAEADKLLARLNLRFSSDKLVG-----E 141 (501)
T ss_pred HHHhhhccccccccCc------c-------------CH-----------HHHHHHHHHHHHHcCCCCCccCchh-----h
Confidence 9999886422100000 0 00 0012245678999999887777665 4
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.+++..+||+|++|++|+++.
T Consensus 142 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999998887776666555432 35567777889899999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+++++
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9987654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=277.34 Aligned_cols=191 Identities=19% Similarity=0.222 Sum_probs=144.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--C---CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--S---LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--~---~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++.+ . .+ ..+|++|+..+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 3699999999999999999999999999999999998642 1 00 12688888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.|.....+.... ......+..+++.+++.+...+..
T Consensus 99 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FP-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Cc-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-
Confidence 76 5999999886443211000 001113345667777643211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|+++||||||+++|....+.+.+++... .+.++++++|+..++.++||++++|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL 223 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEEC
Confidence 2344569999999999999999999999999999999988887777776543 235666777888888899999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++..|+++++.
T Consensus 224 G~i~~~g~~~~~~ 236 (253)
T PRK14261 224 GKLIEFDKTTQIF 236 (253)
T ss_pred CEEEEcCCHHHHH
Confidence 9999999988773
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=297.77 Aligned_cols=231 Identities=21% Similarity=0.290 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
..+...++.|+-++++++++... +...++.+...+.++||+|+++.
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~-------~~~~~~~~~~~l~~~~vsF~y~~--------------------------- 348 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTF-------PDEQTATTGQALELRNVSFTYPG--------------------------- 348 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCC-------CccccCCccceeeeccceeecCC---------------------------
Confidence 45566778888888888887321 11112222226899999998742
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-------------------eeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-------------------CDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-------------------~~v~q~d~~ 224 (521)
.+.++|+|+||++++||.++|+|+||||||||+++|+|.++|+.+.. +.++| ..|
T Consensus 349 -----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-r~h 422 (573)
T COG4987 349 -----QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQ-RVH 422 (573)
T ss_pred -----CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhcc-chH
Confidence 22369999999999999999999999999999999999888763211 22333 456
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-------CCc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-------LDV 297 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L~~ 297 (521)
++..|+++|+.++ +|+.+.+.... +++.+| .++
T Consensus 423 lF~~Tlr~NL~lA-------------------------~~~AsDEel~~---------------aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 423 LFSGTLRDNLRLA-------------------------NPDASDEELWA---------------ALQQVGLEKLLESAPD 462 (573)
T ss_pred HHHHHHHHHHhhc-------------------------CCCCCHHHHHH---------------HHHHcCHHHHHHhChh
Confidence 6667777777664 34444443332 333333 345
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH-c-CCeEEEEEecChhHHHhhc
Q 044321 298 CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI-L-EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 298 ~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~-~-~~t~ii~i~h~~~~~~~l~ 375 (521)
.++|.+|+ .++.||||||||++|||+|++++++++|||||.++|.+..+.+.+++.+ . ++|++++ ||+... .+.|
T Consensus 463 gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~v-THrL~~-le~~ 539 (573)
T COG4987 463 GLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV-THRLRG-LERM 539 (573)
T ss_pred hhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEE-eccccc-Hhhc
Confidence 77889986 6788999999999999999999999999999999887766665555433 2 4555555 555433 4689
Q ss_pred CeEEEEeCCEEEEecCHhHHHH
Q 044321 376 DDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 376 D~VivL~~G~iv~~G~~~~v~~ 397 (521)
|+|++|++|+++++|.+++++.
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhc
Confidence 9999999999999999999864
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=307.24 Aligned_cols=238 Identities=22% Similarity=0.278 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++.+...+|+.++++.+++.. . .....+...-.++|+||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~-----~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKD-----T--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----C--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 6677788888888887654410 0 00001111235999999998631
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
....+|+|+|++|++|+.++|+|+||||||||+++|+|+++|..+ ..+|++|++.
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~- 416 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV- 416 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc-
Confidence 123599999999999999999999999999999999999988632 1279999875
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++..|++|||.++... +.+.+.+.++....+ .++.+. .|++..||.+|
T Consensus 417 lf~~Ti~~Ni~~~~~~------------------------~~~~~~i~~~l~~~~------l~~~i~--~lp~gldt~i~ 464 (571)
T TIGR02203 417 LFNDTIANNIAYGRTE------------------------QADRAEIERALAAAY------AQDFVD--KLPLGLDTPIG 464 (571)
T ss_pred cccccHHHHHhcCCCC------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCcccceec
Confidence 5567999999875210 111111111111100 111222 36677899998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+. .+.||||||||++||||++.+|++|+|||||+++|....+.+.+.+... ++|+|++ +|+. .....||+|++|+
T Consensus 465 ~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIii-tH~~-~~~~~~D~ii~l~ 541 (571)
T TIGR02203 465 EN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI-AHRL-STIEKADRIVVMD 541 (571)
T ss_pred CC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEE-ehhh-HHHHhCCEEEEEe
Confidence 74 5679999999999999999999999999999998888777777666554 3455555 4544 5678899999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+++..|+++++.
T Consensus 542 ~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 542 DGRIVERGTHNELL 555 (571)
T ss_pred CCEEEeeCCHHHHH
Confidence 99999999999885
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=273.78 Aligned_cols=197 Identities=21% Similarity=0.259 Sum_probs=172.8
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCC
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~l 228 (521)
+.++.+.+++++||||.++||+|++++|||||||||.+++|.|++.|+.+ ..+|+|.+.-+++.+
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccC
Confidence 35566788999999999999999999999999999999999999998632 238999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.|.+.|.+++.|+.. +++....+.+|+.+++......+|-
T Consensus 88 tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~kIk---- 129 (300)
T COG4152 88 TVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKKIK---- 129 (300)
T ss_pred cHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccchHH----
Confidence 99999999998887632 1233456789999999887776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.||.|++|++.+..+++++|+++|||||+|++|+-.++.|++.+.++ .+++||.++|.++.+.++||++++|++|+.
T Consensus 130 -~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~ 208 (300)
T COG4152 130 -ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208 (300)
T ss_pred -HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCce
Confidence 59999999999999999999999999999999999999999887655 467777788999999999999999999999
Q ss_pred EEecCHhHHHHHH
Q 044321 387 VYQGPREYVLEFF 399 (521)
Q Consensus 387 v~~G~~~~v~~~f 399 (521)
|.+|+.+++...|
T Consensus 209 V~~G~v~~ir~~~ 221 (300)
T COG4152 209 VLYGTVEDIRRSF 221 (300)
T ss_pred EEeccHHHHHHhc
Confidence 9999999998755
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=307.53 Aligned_cols=189 Identities=25% Similarity=0.286 Sum_probs=150.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--CCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--SLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| +.+ ..+|++|+..+++.+
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 4699999999999999999999999999999999999876 211 137888988788899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.|.......+. . +. .+....++++++.+||.+..++.++
T Consensus 98 tv~e~l~~~~~~~~~~~-------~-------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (506)
T PRK13549 98 SVLENIFLGNEITPGGI-------M-------------DY-----------DAMYLRAQKLLAQLKLDINPATPVG---- 142 (506)
T ss_pred cHHHHhhhcccccccCC-------c-------------CH-----------HHHHHHHHHHHHHcCCCCCcccchh----
Confidence 99999988643210000 0 00 0011245678999999877777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|++|++
T Consensus 143 -~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 143 -NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 59999999999999999999999999999998887777666665443 345677778888899999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|+++++
T Consensus 222 ~~~~~~~~~ 230 (506)
T PRK13549 222 IGTRPAAGM 230 (506)
T ss_pred eeecccccC
Confidence 999987765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=279.48 Aligned_cols=186 Identities=16% Similarity=0.237 Sum_probs=140.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-----CCCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-----SSLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-----~~~~---------------------~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|+|||||||||++|+|+++ |+.+ ..+|++|+..+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999875 2211 13688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC----Ccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL----DVCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL----~~~~d 300 (521)
++ .||.||+.++.......... .....+..+++.+++ .+..+
T Consensus 117 ~~-~tv~eni~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~l~~~~~ 162 (271)
T PRK14238 117 FP-KSIYDNVTYGPKIHGIKDKK---------------------------------TLDEIVEKSLRGAAIWDELKDRLH 162 (271)
T ss_pred cc-ccHHHHHHHHHHhcCCCcHH---------------------------------HHHHHHHHHHHHcCCcchHHHHHh
Confidence 65 59999998764322110000 001122344555543 22233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
. .+..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+.++||+++
T Consensus 163 ~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~ 237 (271)
T PRK14238 163 D-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTA 237 (271)
T ss_pred c-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEE
Confidence 3 44569999999999999999999999999999999888777777766543 23566777888888899999999
Q ss_pred EEeCCEEEEecCHhHH
Q 044321 380 LISNGHIVYQGPREYV 395 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v 395 (521)
+|++|++++.|+++++
T Consensus 238 ~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 238 FFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998877
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=272.50 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=143.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee-------eecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC-------DISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~-------~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
++|+||||+|++|++++|+||||||||||+++|+|+++|+.+... .+.+...+++.+|+.||+.+.....+..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 479999999999999999999999999999999999877633211 1223345677899999998865432211
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
.. .....+++.++|+...++.++ .||||||||++||+|
T Consensus 81 ~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~a 118 (213)
T PRK15177 81 GD-------------------------------------EFSHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAIN 118 (213)
T ss_pred HH-------------------------------------HHHHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHH
Confidence 00 011223445677777777665 499999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHHHH-HcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~-~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~ 400 (521)
|+.+|+++||||||+++|....+.+.+++. .....++++++|+...+..+||++++|++|++++.|+.+++..+++
T Consensus 119 l~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 119 LLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 999999999999999888777666666442 2223346667888888889999999999999999999998876654
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=291.23 Aligned_cols=239 Identities=24% Similarity=0.309 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
...++.+.+|+-+.+.+.++. -....++-|+..+..|++++-.
T Consensus 302 ~~~Ar~s~~Rl~~lL~~~p~~--------~~~m~LP~P~g~L~Ve~l~~~P----------------------------- 344 (580)
T COG4618 302 FVAARQSYKRLNELLAELPAA--------AERMPLPAPQGALSVERLTAAP----------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHHHHhCccc--------cCCCCCCCCCceeeEeeeeecC-----------------------------
Confidence 456677888888888877763 1234555567789999988731
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
...++++|+||||.+.+|+.++|+||||||||||.|+|.|...|..+ ..+|++|+-.
T Consensus 345 ---Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe- 420 (580)
T COG4618 345 ---PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE- 420 (580)
T ss_pred ---CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce-
Confidence 12346899999999999999999999999999999999998887532 2389999654
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++..||.|||.=. .++.+.+.+.+++...+ ..|-+ +.|++.+||.+|
T Consensus 421 LF~GTIaeNIaRf-------------------------~~~~d~~kIieAA~lAg-----vHelI---l~lP~GYdT~iG 467 (580)
T COG4618 421 LFDGTIAENIARF-------------------------GEEADPEKVIEAARLAG-----VHELI---LRLPQGYDTRIG 467 (580)
T ss_pred ecCCcHHHHHHhc-------------------------cccCCHHHHHHHHHHcC-----hHHHH---HhCcCCccCccC
Confidence 5568999998521 22334445555554443 33443 469999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH---HcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH---ILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~---~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+ ...+||||||||+++||||.++|.+++||||-+++|.+--..|...+. ..++|+|+++|. +.+...+|+|++|
T Consensus 468 ~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR--Ps~L~~~Dkilvl 544 (580)
T COG4618 468 E-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR--PSALASVDKILVL 544 (580)
T ss_pred C-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC--HHHHhhcceeeee
Confidence 7 567899999999999999999999999999999988776665554432 235666665543 5788999999999
Q ss_pred eCCEEEEecCHhHHHHHH
Q 044321 382 SNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f 399 (521)
++|++-.+|+.++++..+
T Consensus 545 ~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 545 QDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCChHHhcCCHHHHHHHh
Confidence 999999999999998654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=310.15 Aligned_cols=188 Identities=22% Similarity=0.227 Sum_probs=149.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~ 226 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|+. .+++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 4699999999999999999999999999999999999876421 137888875 4778
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
.+||.+++.+.....+.... .+....+.++|+.+||. ...+++++
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~~gL~~~~~~~~~~- 462 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPG---------------------------------KAAAARVAWLLERVGLLPEHAWRYPH- 462 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCHHHhhCCcc-
Confidence 89999999876432211000 00122456789999996 45666654
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+.+||+++|+...+..+||+|++|+
T Consensus 463 ----~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~ 538 (623)
T PRK10261 463 ----EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY 538 (623)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999988877666666655332 25667777899999999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|++++++
T Consensus 539 ~G~iv~~g~~~~i~ 552 (623)
T PRK10261 539 LGQIVEIGPRRAVF 552 (623)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999999884
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=313.46 Aligned_cols=238 Identities=22% Similarity=0.328 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+..++|+.++++.+++.. .......+ ...|+|+|+++.+..
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~~--------~~~~~~~~~~~~~i~~~~vsf~y~~------------------------- 467 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEPR--------SAGLAALPELRGAITFENIRFRYAP------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCcc--------CCCCCCCCCCCCeEEEEEEEEEcCC-------------------------
Confidence 5678888999999988766521 00011122 246999999998621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+.+|+|+||+|++|+.++|+|+||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 468 -------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 468 -------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred -------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 123589999999999999999999999999999999999988632 127899976
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++||+.++.. +.+.+...++....+ .++.++ .|+...||.
T Consensus 541 ~lf-~~ti~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~t~ 586 (694)
T TIGR01846 541 VLF-SRSIRDNIALCNP-------------------------GAPFEHVIHAAKLAG------AHDFIS--ELPQGYNTE 586 (694)
T ss_pred eeh-hhhHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCccCcE
Confidence 554 5799999987421 111111222211111 122222 366778999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+. ..+||||||||++|||||+.+|++|||||||+++|....+.+.+.+... .+.++|+++|.... ...||+|++|
T Consensus 587 i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~-~~~~d~ii~l 664 (694)
T TIGR01846 587 VGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST-VRACDRIIVL 664 (694)
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH-HHhCCEEEEE
Confidence 9874 6789999999999999999999999999999998887777776666543 33444445555544 4669999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++.+
T Consensus 665 ~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 665 EKGQIAESGRHEELLA 680 (694)
T ss_pred eCCEEEEeCCHHHHHH
Confidence 9999999999998853
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=276.19 Aligned_cols=190 Identities=21% Similarity=0.217 Sum_probs=147.9
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc------eeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN------RCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~------~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
..+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+. ..++.+.....+.+|+.+|+.+.....+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 4567999999999999999999999999999999999998876421 1355565556678999999987543221
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
... .+....++.+++.++|.+..++.++ .|||||+|||+||
T Consensus 115 ~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~La 155 (264)
T PRK13546 115 FKR----------------------------------KEIKAMTPKIIEFSELGEFIYQPVK-----KYSSGMRAKLGFS 155 (264)
T ss_pred CCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHH
Confidence 100 0011134557778888877766554 5999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
+||+.+|++|||||||+++|....+.+.+++... .+.++|+++|+..++.++||+|++|++|++++.|+.+++.+
T Consensus 156 ral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 156 INITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999887666665555432 35566667788888899999999999999999999988754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=307.38 Aligned_cols=189 Identities=22% Similarity=0.303 Sum_probs=143.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|..+ ..+|++|++.+| ..|++|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~ 427 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIED 427 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHH
Confidence 589999999999999999999999999999999999988642 128899987555 679999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.++.. +.+.+....+.... -.+..+. .++...||.+|+ ....||
T Consensus 428 Ni~~~~~-------------------------~~~d~~i~~al~~~------~l~~~i~--~lp~gldt~i~~-~g~~LS 473 (588)
T PRK13657 428 NIRVGRP-------------------------DATDEEMRAAAERA------QAHDFIE--RKPDGYDTVVGE-RGRQLS 473 (588)
T ss_pred HHhcCCC-------------------------CCCHHHHHHHHHHh------CHHHHHH--hCcccccchhcC-CCCCCC
Confidence 9987521 11111111111100 0111222 266778899986 456799
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... ++|+|+++ |+. ...+.||+|++|++|+++..|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiit-Hr~-~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIA-HRL-STVRNADRILVFDNGRVVESG 551 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEE-ecH-HHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999998888777776665543 34555554 544 456789999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++.+
T Consensus 552 ~~~~l~~ 558 (588)
T PRK13657 552 SFDELVA 558 (588)
T ss_pred CHHHHHH
Confidence 9998853
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=272.91 Aligned_cols=188 Identities=24% Similarity=0.357 Sum_probs=138.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..++ ..||.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cchHH
Confidence 4699999999999999999999999999999999999876521 137888887555 57999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
||+.+... ... .. .+.. ... ......+++.+ ++....+. .+.
T Consensus 94 ~nl~~~~~--~~~-~~----~~~~------------------~~~------~~~~~~~l~~l~~~~~~~~~~-----~~~ 137 (237)
T cd03252 94 DNIALADP--GMS-ME----RVIE------------------AAK------LAGAHDFISELPEGYDTIVGE-----QGA 137 (237)
T ss_pred HHhhccCC--CCC-HH----HHHH------------------HHH------HcCcHHHHHhCcccccchhhc-----CCC
Confidence 99977421 100 00 0000 000 00112344444 44443443 345
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+.+++ ..||++++|++|++++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRIVE 216 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEE
Confidence 69999999999999999999999999999999888777777766543 345566667777777 4699999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 217 ~~~~~~~~ 224 (237)
T cd03252 217 QGSHDELL 224 (237)
T ss_pred EcCHHHHH
Confidence 99988774
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=274.65 Aligned_cols=187 Identities=22% Similarity=0.273 Sum_probs=137.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-----------------------------eeecCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-----------------------------CDISQH 221 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-----------------------------~~v~q~ 221 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|.. +. +|++|+
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-GTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 358999999999999999999999999999999999987642 22 334443
Q ss_pred cc--ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-c
Q 044321 222 DV--HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-C 298 (521)
Q Consensus 222 d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~ 298 (521)
+. ..+.+|+.+|+.+....... . . ..+....+..+++.+|+.+ .
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~-------------------~---~-----------~~~~~~~~~~~l~~l~l~~~~ 141 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGA-------------------R---H-----------YGNIRAAAHDWLEEVEIDPTR 141 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcc-------------------c---c-----------hHHHHHHHHHHHHHcCCChhh
Confidence 21 12234455554332110000 0 0 0011234567899999963 5
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhc
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~ 375 (521)
.++.+ ..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+.+.+..+|
T Consensus 142 ~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~ 216 (253)
T TIGR02323 142 IDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA 216 (253)
T ss_pred hhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 56554 459999999999999999999999999999999887777666655432 2556666778888899999
Q ss_pred CeEEEEeCCEEEEecCHhHHH
Q 044321 376 DDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 376 D~VivL~~G~iv~~G~~~~v~ 396 (521)
|++++|++|++++.|+++++.
T Consensus 217 d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 217 QRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999988773
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=311.34 Aligned_cols=187 Identities=22% Similarity=0.270 Sum_probs=148.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------------ceee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------------NRCD 217 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------------~~~~ 217 (521)
.++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 4699999999999999999999999999999999999876411 1267
Q ss_pred ecCCc--cccCCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC
Q 044321 218 ISQHD--VHIGEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG 294 (521)
Q Consensus 218 v~q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 294 (521)
|+|++ .+++.+||.||+.++.+.. +... .+....+.++|+.+|
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~g 154 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASR----------------------------------EEAMVEAKRMLDQVR 154 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHCC
Confidence 88875 4677899999998875431 1100 011234567899999
Q ss_pred CCc---cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecCh
Q 044321 295 LDV---CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPA 368 (521)
Q Consensus 295 L~~---~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~ 368 (521)
|.+ ..+.++ ..|||||||||+||+||+.+|++|||||||+++|......+.++++++ .+++||+++|+.
T Consensus 155 L~~~~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 155 IPEAQTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCChhhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 964 345444 469999999999999999999999999999998887666665555433 256677788999
Q ss_pred hHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 369 PETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 369 ~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..+.++||+|++|++|++++.|++++++
T Consensus 230 ~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 230 GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 9999999999999999999999988774
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=277.43 Aligned_cols=189 Identities=18% Similarity=0.216 Sum_probs=139.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
..+|+||||+|++|++++|+||||||||||+++|+|++.+ ..+ ..+|++|+..+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 3699999999999999999999999999999999998642 110 12677887666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.||+.+.....+... . ....++.+++.+++.+......
T Consensus 103 ~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 145 (264)
T PRK14243 103 FP-KSIYDNIAYGARINGYKG------D-----------------------------MDELVERSLRQAALWDEVKDKL- 145 (264)
T ss_pred cc-ccHHHHHHhhhhhcCcch------H-----------------------------HHHHHHHHHHHhCchhhHHHHh-
Confidence 66 599999887643211100 0 0012233455555532111111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe-
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS- 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~- 382 (521)
+..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++... ...+||+++|+.+++.++||+|++|+
T Consensus 146 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~ 225 (264)
T PRK14243 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNV 225 (264)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 2234569999999999999999999999999999999888777777766543 23566667788889999999999998
Q ss_pred --------CCEEEEecCHhHHH
Q 044321 383 --------NGHIVYQGPREYVL 396 (521)
Q Consensus 383 --------~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 226 ~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 226 ELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccccccCceEEEeCCHHHHH
Confidence 89999999998884
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=271.51 Aligned_cols=178 Identities=24% Similarity=0.322 Sum_probs=141.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~ 225 (521)
+++.+ ||||+|++ ++++|+||||||||||+++|+|+++|+.+ ..+|++|+..++
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALF 87 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccC
Confidence 34445 99999999 99999999999999999999999876421 136888888778
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+|+.+|+.+..... .. . .....+..+++.+||.+..++.++
T Consensus 88 ~~~t~~~~l~~~~~~~--~~------~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 130 (214)
T cd03297 88 PHLNVRENLAFGLKRK--RN------R----------------------------EDRISVDELLDLLGLDHLLNRYPA- 130 (214)
T ss_pred CCCCHHHHHHHHHhhC--CH------H----------------------------HHHHHHHHHHHHcCCHhHhhcCcc-
Confidence 8899999998753210 00 0 011234568889999876666554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.+++..+||++++|+
T Consensus 131 ----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (214)
T cd03297 131 ----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME 206 (214)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 59999999999999999999999999999999888777777666543 25667777888888999999999999
Q ss_pred CCEEEEec
Q 044321 383 NGHIVYQG 390 (521)
Q Consensus 383 ~G~iv~~G 390 (521)
+|++++.|
T Consensus 207 ~G~i~~~g 214 (214)
T cd03297 207 DGRLQYIG 214 (214)
T ss_pred CCEEEecC
Confidence 99998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=279.36 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=143.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++++ ..+ ..+|++|+..+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3699999999999999999999999999999999999752 210 12678888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ .||.||+.+.....+... .....+..+++.+||.. ..+
T Consensus 132 ~~-~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 132 FP-KSIYDNVAYGLKIQGYDG-----------------------------------DIDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred Cc-CCHHHHHHHHHHHcCCcH-----------------------------------HHHHHHHHHHHHcCCCchhHHHHh
Confidence 66 499999987643321100 00113456778888753 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
.. +..|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. +..+||+++|+...+..+||+++
T Consensus 176 ~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~ 250 (285)
T PRK14254 176 SS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA 250 (285)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 33 4569999999999999999999999999999999988877777776554 23566777888888999999975
Q ss_pred -EEeCCEEEEecCHhHHH
Q 044321 380 -LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 -vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 251 v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 251 VFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEeeCCEEEEeCCHHHHH
Confidence 67999999999988763
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.66 Aligned_cols=184 Identities=20% Similarity=0.208 Sum_probs=139.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC----CCC-----------------ceeeecCCcc--ccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-----------------NRCDISQHDV--HIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~----~~~-----------------~~~~v~q~d~--~~~~l 228 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++| +.+ ..+|++|+.. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 589999999999999999999999999999999999877 311 1256677653 33446
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc---cccccccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV---CADTMVGD 305 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg~ 305 (521)
|+.+++.+.+...+.. .....+..+++.+||.+ ..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~-- 138 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKLYP-- 138 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhcCC--
Confidence 7776665432211100 00123566888999975 234444
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. .+++|++++|+..++.++||++++|+
T Consensus 139 ---~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 139 ---FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999998887666655554432 25566777788888889999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (254)
T PRK10418 216 HGRIVEQGDVETLF 229 (254)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988774
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=279.13 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=148.5
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQH 221 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~ 221 (521)
++++.+|+|+||+|++|++++|+||||||||||+++|+|++.| ..+ ..+|++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 3456799999999999999999999999999999999999865 110 12778887
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
...+ .+|+.||+.++....+... +....+..+++.+||.+....
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~i~~ 141 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNRYKG-----------------------------------DLGDRVKHALQGAALWDEVKD 141 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcCchH-----------------------------------HHHHHHHHHHHHcCCchhhhh
Confidence 6655 6999999988643221100 001134557788887543322
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
.. +..++.|||||+||++|||||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++.++||+|++
T Consensus 142 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 142 KL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred hh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 22 1345679999999999999999999999999999999988877777776654 345677778888889999999999
Q ss_pred Ee--------CCEEEEecCHhHHH
Q 044321 381 IS--------NGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~--------~G~iv~~G~~~~v~ 396 (521)
|+ +|++++.|+++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 96 89999999988874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=305.16 Aligned_cols=193 Identities=26% Similarity=0.291 Sum_probs=150.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV 97 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence 4699999999999999999999999999999999999876421 13788898888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.++....... .. . ...+ ..+....+.++++.+||.+..++.++ .
T Consensus 98 ~e~l~~~~~~~~~~--~~-------------~-~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (510)
T PRK09700 98 LENLYIGRHLTKKV--CG-------------V-NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA-----N 145 (510)
T ss_pred HHHhhhcccccccc--cc-------------c-cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh-----h
Confidence 99998753210000 00 0 0000 00112245678999999887777665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|++|++++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 9999999999999999999999999999998887777666665443 35567777899889999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+++++
T Consensus 226 ~g~~~~~ 232 (510)
T PRK09700 226 SGMVSDV 232 (510)
T ss_pred ecchhhC
Confidence 9998765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=303.54 Aligned_cols=190 Identities=21% Similarity=0.252 Sum_probs=147.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC-----------------------------------
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK----------------------------------- 213 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~----------------------------------- 213 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|++ .|+.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999986 34311
Q ss_pred -----------------ceeeecCC-ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 044321 214 -----------------NRCDISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275 (521)
Q Consensus 214 -----------------~~~~v~q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~ 275 (521)
..+|++|+ ..+++.+||.||+.|.....+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~------------------------------- 141 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE------------------------------- 141 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC-------------------------------
Confidence 01456664 44566677777777653221110
Q ss_pred hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH
Q 044321 276 ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI 355 (521)
Q Consensus 276 ~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~ 355 (521)
..+....+.++++.+||.+..+..++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+
T Consensus 142 ---~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 142 ---GKEAVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred ---HHHHHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 01122346778999999877776654 5999999999999999999999999999999988877776555443
Q ss_pred c---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHH
Q 044321 356 L---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 356 ~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f 399 (521)
. .+++||+++|+...+.++||+|++|++|++++.|+++++...+
T Consensus 214 l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 214 AVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 2 2556777788888889999999999999999999998876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=304.56 Aligned_cols=236 Identities=20% Similarity=0.241 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+..+.+.+|+.++++.+++. ...+...+ ...|+|+|+++.+..
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~---------~~~~~~~~~~~~~I~~~~v~~~y~~------------------------- 325 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVV---------KDGSEPVPEGRGELDVNIRQFTYPQ------------------------- 325 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcc---------cCCCCCCCCCCCcEEEEEEEEECCC-------------------------
Confidence 456677888888888765431 00011111 235889999988621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
++..+|+|+|++|++|+.++|+||||||||||+++|+|+++|+.+ ..+|++|++
T Consensus 326 -------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 326 -------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred -------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 123589999999999999999999999999999999999988632 127889987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++||+.++... .+.+....+....+ ..+. ...+++..||.
T Consensus 399 ~lf-~~ti~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~-----l~~~---i~~lp~gl~t~ 444 (569)
T PRK10789 399 FLF-SDTVANNIALGRPD-------------------------ATQQEIEHVARLAS-----VHDD---ILRLPQGYDTE 444 (569)
T ss_pred eec-cccHHHHHhcCCCC-------------------------CCHHHHHHHHHHcC-----CHHH---HHhCcCcccce
Confidence 665 46999999875210 01111111110000 0111 22467788999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+|+ ....||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+... +.|+|+++ |+. +....||+|++
T Consensus 445 ~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it-H~~-~~~~~~d~i~~ 521 (569)
T PRK10789 445 VGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA-HRL-SALTEASEILV 521 (569)
T ss_pred ecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe-cch-hHHHcCCEEEE
Confidence 987 46679999999999999999999999999999998888777776666543 45555554 544 34567999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|++++.|+++++.+
T Consensus 522 l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 522 MQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EeCCEEEEecCHHHHHH
Confidence 99999999999998753
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=305.20 Aligned_cols=240 Identities=19% Similarity=0.274 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.+..+..++|+.++.+.+++. .+..+....+.+...++|+|+++.+.
T Consensus 299 ~~~~~~~~~ri~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 345 (585)
T TIGR01192 299 IFEARAKLEDFFDLEDSVFQR-----EEPADAPELPNVKGAVEFRHITFEFA---------------------------- 345 (585)
T ss_pred HHHHHHHHHHHHHHHcCCccc-----cCCccCCCCCCCCCeEEEEEEEEECC----------------------------
Confidence 355667777777777654331 00000000111123588999998752
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+...+|+|+||+|++|+.++|+||||||||||+++|+|+++|..+ ..+|++|+..+
T Consensus 346 -----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 346 -----NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred -----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 112489999999999999999999999999999999999987632 12788998765
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+ ..|++||+.++... .+.+....+....+ ..+.+ ..++...+|.+|
T Consensus 421 f-~~ti~~Ni~~~~~~-------------------------~~~~~~~~a~~~~~-----~~~~i---~~l~~g~~t~~~ 466 (585)
T TIGR01192 421 F-NRSIRENIRLGREG-------------------------ATDEEVYEAAKAAA-----AHDFI---LKRSNGYDTLVG 466 (585)
T ss_pred C-cccHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC-----cHHHH---Hhccccccchhc
Confidence 5 57999999875210 01111111111000 11112 135566788887
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+ .+..||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+.+. .+.++|+++|+.+.+ ..||+|++|++
T Consensus 467 ~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~-~~~d~i~~l~~ 544 (585)
T TIGR01192 467 E-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV-RNADLVLFLDQ 544 (585)
T ss_pred C-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH-HcCCEEEEEEC
Confidence 6 46679999999999999999999999999999999888877777766543 333444455655454 67999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++.+
T Consensus 545 G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 545 GRLIEKGSFQELIQ 558 (585)
T ss_pred CEEEEECCHHHHHH
Confidence 99999999988753
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=272.76 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=144.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++. | +. ...+|++|+...
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 469999999999999999999999999999999999753 2 11 013788888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.+|+.+.....+.... ......+.++++.+||........
T Consensus 96 ~~-~t~~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14266 96 FP-KSIFDNVAYGLRIHGEDDE---------------------------------DFIEERVEESLKAAALWDEVKDKL- 140 (250)
T ss_pred Cc-chHHHHHHhHHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-
Confidence 66 4999998875432111000 001123456677777743221111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++..+||++++|++
T Consensus 141 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~ 220 (250)
T PRK14266 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN 220 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 2345579999999999999999999999999999999888777777766543 345667777888899999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14266 221 GEIIESGLTDQIF 233 (250)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999988873
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=296.77 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=146.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeee-------cCCccccCCCCHHHHHHHHHHhccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDI-------SQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v-------~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|.. +...+ .....+.+.+|++|++.+.....+.
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s-GeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK-GTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc-eEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 469999999999999999999999999999999999988753 22222 2223455678999999875432111
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.. .+....++.+++.+||.+..++.++ .|||||||||+||+
T Consensus 116 ~~----------------------------------~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLAr 156 (549)
T PRK13545 116 TK----------------------------------EKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAI 156 (549)
T ss_pred CH----------------------------------HHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHH
Confidence 00 0011234568888999877776654 59999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~ 398 (521)
||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+...+..+||++++|++|++++.|+++++...
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999887666666655433 345666677888889999999999999999999999887643
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=273.31 Aligned_cols=194 Identities=23% Similarity=0.281 Sum_probs=142.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC--CCCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK--LDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~--l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+ ++|..+ ..+|++|+...++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 3599999999999999999999999999999999997 344311 124677777777888
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
|+.+++.+......... .. .+.+. .+....+..+++.+||. ...++.++
T Consensus 100 ~~~~~l~~~~~~~~~~~---------------~~-~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 149 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQ---------------GL-PELDP-----------LEFLEIINEKLKLVGMDPSFLSRNVN--- 149 (252)
T ss_pred cHHHHHHHhhhhhhccc---------------cc-ccccH-----------HHHHHHHHHHHHHcCCchhhhccccc---
Confidence 89888876432110000 00 00000 01112356678999997 34555443
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~G 384 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||++++|++|
T Consensus 150 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G 228 (252)
T CHL00131 150 -EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNG 228 (252)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence 249999999999999999999999999999999888777777666543 345666677877777776 8999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++++.|+++.+
T Consensus 229 ~i~~~~~~~~~ 239 (252)
T CHL00131 229 KIIKTGDAELA 239 (252)
T ss_pred EEEEecChhhh
Confidence 99999998843
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=251.96 Aligned_cols=202 Identities=24% Similarity=0.278 Sum_probs=155.7
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------------ceeeecCCc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------NRCDISQHD 222 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------~~~~v~q~d 222 (521)
++...+|.||+++.+.|+.+.++||||+|||||++.|.-+.-|..+ ..+.|+|+-
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 3455799999999999999999999999999999999876544321 015667777
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.++|++||.||+.-+. ++....+..+......++|+.+.|.+.+|..
T Consensus 92 ~lwphltv~enlieap---------------------------------~kv~gl~~~qa~~~a~ellkrlrl~~~adr~ 138 (242)
T COG4161 92 NLWPHLTVQENLIEAP---------------------------------CRVLGLSKDQALARAEKLLKRLRLKPYADRY 138 (242)
T ss_pred ccCchhHHHHHHHhhh---------------------------------HHHhCCCHHHHHHHHHHHHHHhccccccccC
Confidence 7777777777764331 2222233334455677899999999999876
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcC--CeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILE--GTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~--~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+- .|||||+|||+|||||+..|++|++||||+++|++|...+-++++++. +.+-++++|..+.+...+.+|+.
T Consensus 139 pl-----hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvy 213 (242)
T COG4161 139 PL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVY 213 (242)
T ss_pred ce-----ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEe
Confidence 64 599999999999999999999999999999988877776666665552 33444556777888899999999
Q ss_pred EeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 381 ISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|.+|+||++|+.+. |..|.....++|+
T Consensus 214 me~g~ive~g~a~~---------ft~p~te~f~~yl 240 (242)
T COG4161 214 MENGHIVEQGDASC---------FTEPQTEAFKNYL 240 (242)
T ss_pred eecCeeEeecchhh---------ccCccHHHHHHHh
Confidence 99999999998764 5667666666655
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=279.98 Aligned_cols=182 Identities=21% Similarity=0.177 Sum_probs=140.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------------------CceeeecCCccccCCCCHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------------------KNRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------------------~~~~~v~q~d~~~~~lTV~E~ 233 (521)
.+|+||||+|++|++++|+|||||||||||++|+|++++.. ...+|++|++.+|+ .|+++|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~n 96 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKN 96 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHH
Confidence 58999999999999999999999999999999999986321 01278888877765 599999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-------ccccccccCc
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-------VCADTMVGDE 306 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-------~~~dt~vg~~ 306 (521)
+.+... . .. + .+..+++.+||. ..+++.+++
T Consensus 97 l~~~~~---~-~~----------------------~---------------~~~~~l~~~gL~~~~~~~p~~l~~~~~~- 134 (275)
T cd03289 97 LDPYGK---W-SD----------------------E---------------EIWKVAEEVGLKSVIEQFPGQLDFVLVD- 134 (275)
T ss_pred hhhccC---C-CH----------------------H---------------HHHHHHHHcCCHHHHHhCcccccceecC-
Confidence 853210 0 00 0 112233444543 344555554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
....|||||||||+|||||+.+|+||||||||+++|....+.+.+.+... .+++||+++|+.+.+. .||+|++|++|+
T Consensus 135 ~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~~dri~vl~~G~ 213 (275)
T cd03289 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML-ECQRFLVIEENK 213 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-hCCEEEEecCCe
Confidence 45679999999999999999999999999999999988888777777643 3556667778776665 599999999999
Q ss_pred EEEecCHhHHHH
Q 044321 386 IVYQGPREYVLE 397 (521)
Q Consensus 386 iv~~G~~~~v~~ 397 (521)
+++.|++++++.
T Consensus 214 i~~~g~~~~l~~ 225 (275)
T cd03289 214 VRQYDSIQKLLN 225 (275)
T ss_pred EeecCCHHHHhh
Confidence 999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=274.59 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=141.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CC-----------------------CceeeecCCcc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SL-----------------------KNRCDISQHDV 223 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~-----------------------~~~~~v~q~d~ 223 (521)
++|+|+||+|++||+++|+||||||||||+++|+|++.| .. ...+|++|+..
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 699999999999999999999999999999999998763 10 01267888777
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
.++. |++||+.+.....+..... ..+..+..+++.+++........
T Consensus 110 ~~~~-tv~eni~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 110 PFPK-SIFENVAYGLRIRGVKRRS---------------------------------ILEERVENALRNAALWDEVKDRL 155 (265)
T ss_pred CCcc-hHHHHHHhHHHHcCCChHH---------------------------------HHHHHHHHHHHHcCCchhhhHHH
Confidence 6764 9999998764322111000 00112344555666532111111
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+.+++.++||++++|+
T Consensus 156 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~ 234 (265)
T PRK14252 156 -GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMY 234 (265)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 1234569999999999999999999999999999998888777776666543 23567777888889999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+.+++.
T Consensus 235 ~G~i~~~g~~~~~~ 248 (265)
T PRK14252 235 MGELIEFGATDTIF 248 (265)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988773
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=275.41 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=140.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCC--CCHHHHHHHHHHh
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGE--MTVRETLAFSARC 240 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~--lTV~E~l~f~~~~ 240 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++. .|+.+++.+..
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~-- 94 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRP-- 94 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccc--
Confidence 3699999999999999999999999999999999999887632 24788887655554 35665543210
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
+. ....+..+++.+||.+..++.+. .|||||||||+
T Consensus 95 -~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~ 130 (251)
T PRK09544 95 -GT--------------------------------------KKEDILPALKRVQAGHLIDAPMQ-----KLSGGETQRVL 130 (251)
T ss_pred -cc--------------------------------------cHHHHHHHHHHcCChHHHhCChh-----hCCHHHHHHHH
Confidence 00 00123557888999877776554 59999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++.++||+|++|+ |++++.|+++++.
T Consensus 131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 999999999999999999999887777766655432 24566777888889999999999996 5799999988763
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=269.36 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=139.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+...++ .||+|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHH
Confidence 599999999999999999999999999999999999877521 1268888776654 79999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILRG 310 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r~ 310 (521)
|+.+..... . .. .+.... .......+++.+ |+....+.. +..
T Consensus 95 nl~~~~~~~--~--~~---~~~~~~------------------------~~~~~~~~~~~l~~~l~~~~~~~-----~~~ 138 (234)
T cd03251 95 NIAYGRPGA--T--RE---EVEEAA------------------------RAANAHEFIMELPEGYDTVIGER-----GVK 138 (234)
T ss_pred HhhccCCCC--C--HH---HHHHHH------------------------HHcCcHHHHHhcccCcceeeccC-----CCc
Confidence 997753210 0 00 000000 000123445555 555544443 456
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.. ||++++|++|++++.
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeee
Confidence 9999999999999999999999999999999888777777776543 34556666777777765 999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+.+++.+
T Consensus 218 ~~~~~~~~ 225 (234)
T cd03251 218 GTHEELLA 225 (234)
T ss_pred CCHHHHHH
Confidence 99887753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=274.61 Aligned_cols=183 Identities=27% Similarity=0.357 Sum_probs=145.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------------------CceeeecCCccccCCCCHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------------------KNRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------------------~~~~~v~q~d~~~~~lTV~E~l 234 (521)
+|+||||+|++|++++|+||||||||||+++|+|++++.. ...+|++|+...++.+|+.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 8999999999999999999999999999999999875321 0126888887777788999998
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+.... .... .+....++++++.+||.+..++.++ .||||
T Consensus 91 ~~~~~~-~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 130 (248)
T PRK03695 91 TLHQPD-KTRT----------------------------------EAVASALNEVAEALGLDDKLGRSVN-----QLSGG 130 (248)
T ss_pred HhcCcc-CCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHH
Confidence 875211 0000 0011245678889999877776654 59999
Q ss_pred HHHHHHHHHHHcC-------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 315 QRKRVTTGEMLVG-------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 315 qrQRvaIAraLv~-------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||+||+||+. +|++|||||||+++|....+.+.+++... .+++|++++|+..++..+||++++|++|+
T Consensus 131 ~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 210 (248)
T PRK03695 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGK 210 (248)
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999999997 67999999999999888777777766543 35667777888888999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+.+++
T Consensus 211 i~~~g~~~~~ 220 (248)
T PRK03695 211 LLASGRRDEV 220 (248)
T ss_pred EEEECCHHHH
Confidence 9999998776
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=267.24 Aligned_cols=188 Identities=20% Similarity=0.299 Sum_probs=135.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++ .|+.|
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 95 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-GTIME 95 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh-hHHHH
Confidence 599999999999999999999999999999999999876521 1267788765555 48888
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILRG 310 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r~ 310 (521)
|+.+..... .. ..+..... .......++.+ |+....+. .+..
T Consensus 96 ~~~~~~~~~---~~----------------------~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~-----~~~~ 139 (229)
T cd03254 96 NIRLGRPNA---TD----------------------EEVIEAAK------EAGAHDFIMKLPNGYDTVLGE-----NGGN 139 (229)
T ss_pred HHhccCCCC---CH----------------------HHHHHHHH------HhChHHHHHhCcccccCHhhc-----CCCc
Confidence 887642110 00 00000000 00112233333 34333332 3457
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.+|++++|+..++. .||++++|++|++++.
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEE 218 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe
Confidence 9999999999999999999999999999999988777777766543 3455666667777764 5999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=269.41 Aligned_cols=189 Identities=22% Similarity=0.304 Sum_probs=136.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .||+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHH
Confidence 4699999999999999999999999999999999999876521 1367777765554 6888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
||+.+...... . ..+..... ......+++.+ ++....+. .+.
T Consensus 95 e~l~~~~~~~~--~-----~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~-----~~~ 138 (238)
T cd03249 95 ENIRYGKPDAT--D-----EEVEEAAK------------------------KANIHDFIMSLPDGYDTLVGE-----RGS 138 (238)
T ss_pred HHhhccCCCCC--H-----HHHHHHHH------------------------HcChHHHHHhhccccceeecc-----CCc
Confidence 88876421100 0 00000000 00011222333 44333333 345
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.++++++|+.+++. +||++++|++|++++
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~ 217 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE 217 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE
Confidence 69999999999999999999999999999999988877777776543 3455666677777775 899999999999999
Q ss_pred ecCHhHHHH
Q 044321 389 QGPREYVLE 397 (521)
Q Consensus 389 ~G~~~~v~~ 397 (521)
.|+.+++..
T Consensus 218 ~~~~~~~~~ 226 (238)
T cd03249 218 QGTHDELMA 226 (238)
T ss_pred eCCHHHHhh
Confidence 999887754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.78 Aligned_cols=178 Identities=27% Similarity=0.348 Sum_probs=133.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|..+ ..+|++|+...++ .||.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 95 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLR 95 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHH
Confidence 4599999999999999999999999999999999999876421 1267788766555 6888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc------C
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG------D 305 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg------~ 305 (521)
||+.+..... . ...+..+++.++|.+..+..+. .
T Consensus 96 e~l~~~~~~~---~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 135 (220)
T cd03245 96 DNITLGAPLA---D-------------------------------------DERILRAAELAGVTDFVNKHPNGLDLQIG 135 (220)
T ss_pred HHhhcCCCCC---C-------------------------------------HHHHHHHHHHcCcHHHHHhccccccceec
Confidence 8876632100 0 0012234555555544433221 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. ..++||+++|+...+ ++||++++|++|
T Consensus 136 ~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g 214 (220)
T cd03245 136 ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSG 214 (220)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 234579999999999999999999999999999999988888777777654 235666667777665 799999999999
Q ss_pred EEEEec
Q 044321 385 HIVYQG 390 (521)
Q Consensus 385 ~iv~~G 390 (521)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=270.10 Aligned_cols=180 Identities=21% Similarity=0.261 Sum_probs=137.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+++|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .|++
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 98 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVY 98 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHH
Confidence 4699999999999999999999999999999999998876521 1267888776665 5999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~ 310 (521)
||+.+........ .....+..+++.+||. ...++.+ ..
T Consensus 99 enl~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 137 (225)
T PRK10247 99 DNLIFPWQIRNQQ------------------------------------PDPAIFLDDLERFALPDTILTKNI-----AE 137 (225)
T ss_pred HHHHhHHhhcCCC------------------------------------hHHHHHHHHHHHcCCChHHhcCCc-----cc
Confidence 9988753221100 0011345688899995 3555555 45
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe-CCEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS-NGHI 386 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~-~G~i 386 (521)
|||||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++. .||++++|+ ++..
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~ 216 (225)
T PRK10247 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGE 216 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccch
Confidence 9999999999999999999999999999999888777777665543 2455666677777774 699999995 6667
Q ss_pred EEecCHh
Q 044321 387 VYQGPRE 393 (521)
Q Consensus 387 v~~G~~~ 393 (521)
+.+|.++
T Consensus 217 ~~~~~~~ 223 (225)
T PRK10247 217 MQEARYE 223 (225)
T ss_pred Hhhhhhc
Confidence 7777654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=274.86 Aligned_cols=187 Identities=25% Similarity=0.277 Sum_probs=142.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~ 226 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+. .+++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 4699999999999999999999999999999999999876421 125677765 2445
Q ss_pred CCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-cccccccc
Q 044321 227 EMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVG 304 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 304 (521)
..|+.+++.+..... .. + ..+....++.+++.+||. ...++.+
T Consensus 105 ~~t~~~~l~~~~~~~~~~-----------------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~- 149 (268)
T PRK10419 105 RKTVREIIREPLRHLLSL-----------------------D-----------KAERLARASEMLRAVDLDDSVLDKRP- 149 (268)
T ss_pred CCCHHHHHHHHHHhhccC-----------------------C-----------HHHHHHHHHHHHHHcCCChhHhhCCC-
Confidence 678888876542110 00 0 001122456788899996 4555554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+...+.++||++++|
T Consensus 150 ----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 150 ----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 459999999999999999999999999999998887555555544332 2566777788888899999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+++++.
T Consensus 226 ~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 226 DNGQIVETQPVGDKL 240 (268)
T ss_pred ECCEEeeeCChhhcc
Confidence 999999999988763
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=300.72 Aligned_cols=189 Identities=22% Similarity=0.268 Sum_probs=150.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lT 229 (521)
++.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+|
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 45799999999999999999999999999999999999876421 1368899887888999
Q ss_pred HHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|.||+.++.. ..+... +. .+....++.+++.+||.+..++.++
T Consensus 90 v~~~l~~~~~~~~~~~~---------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFV---------------------DQ-----------DKMYRDTKAIFDELDIDIDPRAKVA---- 133 (491)
T ss_pred HHHHhhccccccccccc---------------------CH-----------HHHHHHHHHHHHHcCCCCCccCchh----
Confidence 9999987531 100000 00 0011245678899999877776665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+.+++..+||+|++|++|++
T Consensus 134 -~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 134 -TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999887777776665443 355667778888899999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|+++++
T Consensus 213 ~~~~~~~~~ 221 (491)
T PRK10982 213 IATQPLAGL 221 (491)
T ss_pred EeecChhhC
Confidence 999987664
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=265.33 Aligned_cols=177 Identities=26% Similarity=0.343 Sum_probs=137.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||++++|++++|+||||||||||+++|+|.++|+.+ ..+|++|+...++.+
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 5699999999999999999999999999999999999876421 137788888778889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+......... . .+....+.++++.+||.+..++.+.
T Consensus 98 t~~~n~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (220)
T TIGR02982 98 TARQNVQMALELQPNLS---------Y------------------------QEARERARAMLEAVGLGDHLDYYPH---- 140 (220)
T ss_pred CHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhcChh----
Confidence 99999988643211000 0 0111245678899999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.||||||||++||++|+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.. +.++||+|++|++|+
T Consensus 141 -~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 141 -NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIVHMEDGK 218 (220)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEEEEECCE
Confidence 59999999999999999999999999999998887766655555432 2455555566665 568999999999998
Q ss_pred E
Q 044321 386 I 386 (521)
Q Consensus 386 i 386 (521)
+
T Consensus 219 ~ 219 (220)
T TIGR02982 219 L 219 (220)
T ss_pred E
Confidence 6
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=298.70 Aligned_cols=190 Identities=25% Similarity=0.273 Sum_probs=148.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--CCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--SLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+...++.+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 4699999999999999999999999999999999999875 211 136889988888899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-cccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-DTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~~ 307 (521)
||.||+.+........... .. .+....++.+++.+||.+.. ++.++
T Consensus 94 tv~~~l~~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 140 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRM-------------------AY-----------NAMYLRAKNLLRELQLDADNVTRPVG--- 140 (500)
T ss_pred cHHHHHHhhcccccccccc-------------------CH-----------HHHHHHHHHHHHHcCCCCCcccCchh---
Confidence 9999998764221000000 00 01122456789999997654 34454
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||+|++|++|+
T Consensus 141 --~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 141 --DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218 (500)
T ss_pred --hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCe
Confidence 59999999999999999999999999999999888777776665443 35567777899899999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 219 i~~~~~~~~~ 228 (500)
T TIGR02633 219 HVATKDMSTM 228 (500)
T ss_pred EeeecCcccC
Confidence 9999987543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=267.80 Aligned_cols=200 Identities=20% Similarity=0.241 Sum_probs=136.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCCce---------------------eeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLKNR---------------------CDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~~~---------------------~~v~q~d~~~~~ 227 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++ +|. .+. +|++|+...++.
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC-ceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 46999999999999999999999999999999999985 343 222 344444444444
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~ 306 (521)
+|+.+++.+.... +.. ....... ........++.+++.++|+. ..++.+.
T Consensus 93 ~~~~~~~~~~~~~------------~~~------~~~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (248)
T PRK09580 93 VSNQFFLQTALNA------------VRS------YRGQEPL---------DRFDFQDLMEEKIALLKMPEDLLTRSVN-- 143 (248)
T ss_pred hhHHHHHHHhhhh------------hhc------ccccccc---------hHHHHHHHHHHHHHHcCCChhhcccCCC--
Confidence 4443333221100 000 0000000 00011234567888899953 4444432
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~ 383 (521)
+.|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+++||+++|+...+... +|+|++|++
T Consensus 144 --~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~ 221 (248)
T PRK09580 144 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ 221 (248)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEEC
Confidence 259999999999999999999999999999999988777777655433 245566667777777776 899999999
Q ss_pred CEEEEecCHhHHHHHHHHcC
Q 044321 384 GHIVYQGPREYVLEFFKFMG 403 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g 403 (521)
|++++.|+++.+ +.++..+
T Consensus 222 g~i~~~g~~~~~-~~~~~~~ 240 (248)
T PRK09580 222 GRIVKSGDFTLV-KQLEEQG 240 (248)
T ss_pred CeEEEeCCHHHH-HHHHhcC
Confidence 999999998855 3334333
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=299.44 Aligned_cols=241 Identities=23% Similarity=0.319 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.++.+..++|+.++++.+.+. .........+.+ ...++|+|+++.+..
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~f~y~~-------------------------- 349 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDI-----KAPAHPKTLPVPLRGEIEFEQVNFAYPA-------------------------- 349 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcC-----CCCCCCccCCcCCCceEEEEEEEEECCC--------------------------
Confidence 456777788888887654331 000000001112 125899999998631
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
...+.+|+|+||+|+|||.++|+||||||||||+++|+|+++|..+ ..+|++|++.
T Consensus 350 -----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 350 -----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred -----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 0113699999999999999999999999999999999999988632 1278888765
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+++.|++||+.++.. +.+.+....+....+ ..+.++ .++...||.+
T Consensus 425 -lf~~Ti~~Ni~~~~~-------------------------~~~~~~~~~~l~~~~------l~~~i~--~l~~gl~t~i 470 (576)
T TIGR02204 425 -LFAASVMENIRYGRP-------------------------DATDEEVEAAARAAH------AHEFIS--ALPEGYDTYL 470 (576)
T ss_pred -cccccHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------cHHHHH--hCCCCCCcee
Confidence 557899999987521 011111111111000 111222 2456678888
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|+ ....||||||||++||||++.+|++|+|||||+++|....+.+.+.+... .+.++|+++|+. +....||+|++|+
T Consensus 471 ~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~-~~~~~~d~vi~l~ 548 (576)
T TIGR02204 471 GE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL-ATVLKADRIVVMD 548 (576)
T ss_pred CC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecch-HHHHhCCEEEEEE
Confidence 86 45679999999999999999999999999999988877766665554443 334444455554 4557899999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+++..|+++++.
T Consensus 549 ~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 549 QGRIVAQGTHAELI 562 (576)
T ss_pred CCEEEeeecHHHHH
Confidence 99999999998874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=297.67 Aligned_cols=212 Identities=25% Similarity=0.284 Sum_probs=155.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHh-c
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARC-Q 241 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~-~ 241 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++.+||.||+.++... .
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~ 99 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVK 99 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHH
Confidence 4699999999999999999999999999999999999887532 237999998888899999999875321 0
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHH-------HHHHH-hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDV-------FMKAA-ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~-------~~~~~-~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+. ............ .+..+... +.... .....+....++.+++.+||.. .+..++ .|||
T Consensus 100 ~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~-----~LSg 166 (556)
T PRK11819 100 AA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVT-----KLSG 166 (556)
T ss_pred HH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchh-----hcCH
Confidence 00 000000000000 00000000 00000 0011122345678899999963 565554 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCH
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPR 392 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~ 392 (521)
||||||+||+||+.+|++|||||||+++|......+.++++..++ +||+++|+...+..+||+|++|++|+++ +.|+.
T Consensus 167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~-tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 245 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG-TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 245 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCC-eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCH
Confidence 999999999999999999999999999999999999998887765 5666788888999999999999999986 88988
Q ss_pred hHHH
Q 044321 393 EYVL 396 (521)
Q Consensus 393 ~~v~ 396 (521)
+++.
T Consensus 246 ~~~~ 249 (556)
T PRK11819 246 SSWL 249 (556)
T ss_pred HHHH
Confidence 7653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=264.65 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=133.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~ 226 (521)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 35799999999999999999999999999999999999876421 1367788877778
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.+|++||+.|.....+... .+....+..+++.+||.+..++.+.
T Consensus 90 ~~t~~e~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSK----------------------------------KEKREKKKEALEKVGLNLKLKQKIY-- 133 (206)
T ss_pred CCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhhcCChh--
Confidence 8999999988643221100 0011235668899999877776654
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.||||||||++||+||+.+|++|||||||+++|....+.+.+++++. .++++++++|+... ..+||++++|
T Consensus 134 ---~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~d~i~~l 206 (206)
T TIGR03608 134 ---ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-AKQADRVIEL 206 (206)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhcCEEEeC
Confidence 59999999999999999999999999999998887777777766543 24555556677654 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=327.54 Aligned_cols=240 Identities=18% Similarity=0.186 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhc-CC-CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARV-GI-SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.+....+++|+.++++.++|... ..+.. .. ..| ...|+|+||++.|..
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~~-----~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAPL-----VIENNRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcccc-----cccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 35667888999998876665210 00000 01 112 246999999999731
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
+...+|+||||+|+|||.+||+|++|||||||+++|.|+++|..+ ..++|+|+
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQd 1321 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQA 1321 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCC
Confidence 112599999999999999999999999999999999999988632 12789998
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+.+|. .|++|||.++.. .+.+...++....+ ..+.+ + .++..+||
T Consensus 1322 p~LF~-GTIreNLd~~~~--------------------------~tdeei~~Al~~a~-----l~~~I-~--~lp~GLdt 1366 (1622)
T PLN03130 1322 PVLFS-GTVRFNLDPFNE--------------------------HNDADLWESLERAH-----LKDVI-R--RNSLGLDA 1366 (1622)
T ss_pred Ccccc-ccHHHHhCcCCC--------------------------CCHHHHHHHHHHcC-----cHHHH-H--hCccccCc
Confidence 87664 699999976421 01111122211111 11222 2 36778899
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
.||+ .+..||||||||++|||||+++|+||||||||+++|.+.-+.+.+.+++. .+.|+|++.|.... ...||+|++
T Consensus 1367 ~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t-I~~~DrIlV 1444 (1622)
T PLN03130 1367 EVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT-IIDCDRILV 1444 (1622)
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH-HHhCCEEEE
Confidence 9986 45679999999999999999999999999999988877776666665543 34455555566544 456999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+|++.|+++++++
T Consensus 1445 Ld~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1445 LDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999999863
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=328.33 Aligned_cols=191 Identities=25% Similarity=0.331 Sum_probs=162.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||.|++||+++|+||||||||||+|+|+|.+.|+.+ ..+|++|.+.+++.+||+|
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 5799999999999999999999999999999999999887531 1378999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
++.+.++..+.... +.+..++++|+.+||.+..|+.++. ||
T Consensus 2032 ~L~l~a~l~g~~~~----------------------------------~~~~~v~~lLe~lgL~~~~dk~~~~-----LS 2072 (2272)
T TIGR01257 2032 HLYLYARLRGVPAE----------------------------------EIEKVANWSIQSLGLSLYADRLAGT-----YS 2072 (2272)
T ss_pred HHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99987665443110 1123456789999999888877764 99
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+++|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++..+||+|++|.+|++++.|
T Consensus 2073 GGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999988777777766543 3567777889999999999999999999999999
Q ss_pred CHhHHHHHHH
Q 044321 391 PREYVLEFFK 400 (521)
Q Consensus 391 ~~~~v~~~f~ 400 (521)
+++++...|.
T Consensus 2153 s~q~Lk~~~g 2162 (2272)
T TIGR01257 2153 TIQHLKSKFG 2162 (2272)
T ss_pred CHHHHHHHhC
Confidence 9999987664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=296.34 Aligned_cols=187 Identities=21% Similarity=0.242 Sum_probs=147.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 5799999999999999999999999999999999999865310 12678887777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-----cc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-----CA 299 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-----~~ 299 (521)
++.+||.||+.+...+ .... .+....+..+++.+||.+ ..
T Consensus 377 ~~~~tv~e~l~~~~~~-~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 421 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGL-ELPD----------------------------------ELARMKAVITLKMVGFDEEKAEEIL 421 (520)
T ss_pred CCCCcHHHHHHHHHHc-CCCH----------------------------------HHHHHHHHHHHHhCCCCCccchhhh
Confidence 7888999998775321 0000 001123566889999975 34
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcC
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D 376 (521)
++.+ ..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+.++||
T Consensus 422 ~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 422 DKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCC
Confidence 5555 459999999999999999999999999999998887777766665432 24566777888899999999
Q ss_pred eEEEEeCCEEEEecCHhHHHH
Q 044321 377 DIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~~ 397 (521)
++++|++|++++.|+++++.+
T Consensus 497 ~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 497 RAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999887743
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=274.20 Aligned_cols=188 Identities=21% Similarity=0.268 Sum_probs=141.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCcccc--CCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDVHI--GEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~~~--~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+. ...++.+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 4699999999999999999999999999999999999877521 135677764331 2345677
Q ss_pred HHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 233 TLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 233 ~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
++.++.... +. .... .......+..+++.+||.+..++.++ .|
T Consensus 100 ~i~~~~~~~~~~-------------------~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 143 (272)
T PRK15056 100 VVMMGRYGHMGW-------------------LRRA------------KKRDRQIVTAALARVDMVEFRHRQIG-----EL 143 (272)
T ss_pred heeccccccccc-------------------ccCC------------CHHHHHHHHHHHHHcCChhHhcCCcc-----cC
Confidence 665431100 00 0000 00012235668899999887777665 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||+++++ +|++++.
T Consensus 144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 999999999999999999999999999999888777777766543 3456677788888899999999877 8999999
Q ss_pred cCHhHH
Q 044321 390 GPREYV 395 (521)
Q Consensus 390 G~~~~v 395 (521)
|+++++
T Consensus 223 g~~~~~ 228 (272)
T PRK15056 223 GPTETT 228 (272)
T ss_pred cCHHhc
Confidence 998876
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=276.52 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=146.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++.+ ..+ ..+|++|+..+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 3599999999999999999999999999999999998752 110 13688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.+.....+.... ..... ..+. . . .......+..+++.++|........
T Consensus 138 ~~-~tv~enl~~~~~~~~~~~~-~~~~~------~~~~--~-~-----------~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 138 FP-KSIRENISYGPRKHGDINT-GLLAR------LLGR--D-D-----------KDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred cc-ccHHHHHHhHHhhcccccc-ccccc------cccc--C-c-----------hHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 66 5999999886432110000 00000 0000 0 0 0011234566788888854332222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeE-EEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDI-ILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~V-ivL~ 382 (521)
+..++.|||||||||+||+||+.+|++|||||||+++|......+.+++++. +..+||+++|+...+.++||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 2345679999999999999999999999999999999888777777766544 2356677788888899999997 5789
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 275 ~G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 GGELVEYDDTDKIF 288 (305)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988763
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=327.05 Aligned_cols=241 Identities=17% Similarity=0.190 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC-CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI-SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+....+++|+.++++.++|... ... +.... ..| ..+|+|+||++.|..
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~~--~~~--~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------- 1246 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEATA--IIE--NNRPVSGWPSRGSIKFEDVHLRYRP------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccccc--ccc--CCCCCCCCCCCCcEEEEEEEEEECC-------------------------
Confidence 44567788999999876665210 000 00000 112 246999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
+...+|+||||+|+|||.+||+|+||||||||+++|.|+++|+.+ ..++|+|++
T Consensus 1247 -------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp 1319 (1495)
T PLN03232 1247 -------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSP 1319 (1495)
T ss_pred -------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCC
Confidence 123599999999999999999999999999999999999988632 128899988
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+|. .|++|||.+... . +.+...++....+ ..+. ++ .++...||.
T Consensus 1320 ~LF~-gTIr~NL~~~~~---~-----------------------sdeei~~al~~a~-----l~~~-I~--~lp~GLdt~ 1364 (1495)
T PLN03232 1320 VLFS-GTVRFNIDPFSE---H-----------------------NDADLWEALERAH-----IKDV-ID--RNPFGLDAE 1364 (1495)
T ss_pred eeeC-ccHHHHcCCCCC---C-----------------------CHHHHHHHHHHcC-----CHHH-HH--hCcCCCCce
Confidence 7665 699999976421 0 1111111111111 1111 11 366778999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+..||||||||++|||||+++|+||||||||+++|.+..+.+.+.+++. .+.|+|+++|... +...||+|++|
T Consensus 1365 v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~-ti~~~DrIlVL 1442 (1495)
T PLN03232 1365 VSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLN-TIIDCDKILVL 1442 (1495)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH-HHHhCCEEEEE
Confidence 986 45679999999999999999999999999999988887777777666543 3444555556654 44569999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|+++++++
T Consensus 1443 ~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1443 SSGQVLEYDSPQELLS 1458 (1495)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999863
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=250.88 Aligned_cols=181 Identities=26% Similarity=0.333 Sum_probs=146.1
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcc
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDV 223 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~ 223 (521)
..+..+||++|++.|++||.++|+|||||||||||-+|+|+..|+.. ..++|+|...
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 34667899999999999999999999999999999999999887632 1289999999
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
++|+||..||+...+.+.+-... +.......+|+.+||.+..+.++
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~HyP 144 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLTHYP 144 (228)
T ss_pred ccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCcccccccCc
Confidence 99999999999987766542110 11123456899999998877666
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ +|||||+|||+||||++..|+|||.||||-++| .++.+.|..+..+ .+|++|.+||+. .+...|||++
T Consensus 145 ~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc~R~~ 217 (228)
T COG4181 145 A-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARCDRQL 217 (228)
T ss_pred c-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhhhhee
Confidence 5 599999999999999999999999999999655 4566666665544 466666677764 5677899999
Q ss_pred EEeCCEEEE
Q 044321 380 LISNGHIVY 388 (521)
Q Consensus 380 vL~~G~iv~ 388 (521)
-|..|+++.
T Consensus 218 r~~~G~l~~ 226 (228)
T COG4181 218 RLRSGRLVE 226 (228)
T ss_pred eeecceecc
Confidence 999999974
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=297.32 Aligned_cols=187 Identities=21% Similarity=0.211 Sum_probs=143.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC----CCc------------------------eeeecCCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKN------------------------RCDISQHD 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~----~~~------------------------~~~v~q~d 222 (521)
+.+|+||||+|.+||+++|+|||||||||||++|+|+++|. ..+ .+|++|+.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999998751 111 25666664
Q ss_pred c--ccCCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc--
Q 044321 223 V--HIGEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-- 297 (521)
Q Consensus 223 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 297 (521)
. .++.+|+.+++.+..... +.. ..+....++++++.+||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 2 345567777765432110 000 0112234677899999975
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHh
Q 044321 298 -CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYD 373 (521)
Q Consensus 298 -~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~ 373 (521)
..++.+ ..|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+.+||+++|+...+..
T Consensus 148 ~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 222 (529)
T PRK15134 148 KRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK 222 (529)
T ss_pred HHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 245555 459999999999999999999999999999999888777766665543 24566677888888999
Q ss_pred hcCeEEEEeCCEEEEecCHhHHH
Q 044321 374 LFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 374 l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+||+|++|++|++++.|+++++.
T Consensus 223 ~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 223 LADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=297.43 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=138.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|+. +...+...+. ...+..+ +...+..+.+....
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~-G~i~~~~~~~--~~~~~~~---~~~~i~~~~q~~~~- 88 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS-GERQSQFSHI--TRLSFEQ---LQKLVSDEWQRNNT- 88 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-ceEEECCccc--ccCCHHH---HHHHhceeccCcch-
Confidence 359999999999999999999999999999999999987753 2233322221 1111111 00011111111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
..+...... ......... . ...+....++.+++.+||.+..++.++ .|||||||||+||+||+.+|+
T Consensus 89 ~~~~~~~~~----~~~~~~~~~---~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~ 155 (490)
T PRK10938 89 DMLSPGEDD----TGRTTAEII---Q-DEVKDPARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPD 155 (490)
T ss_pred hhcccchhh----ccccHHHhc---c-cchhHHHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCC
Confidence 000000000 000000000 0 001123356778999999887777665 499999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+|||||||+++|....+.+.+++++. .+++||+++|+...+.++||+|++|++|++++.|+++++.
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999988777777666543 2456666778888999999999999999999999988764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=291.78 Aligned_cols=194 Identities=26% Similarity=0.362 Sum_probs=158.1
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV 223 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~ 223 (521)
..+.++..++|+||||+|.+||+++|+|.||||||||+|+|+|.+.|+.+ +...|.|+-.
T Consensus 14 i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred ceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 44556778899999999999999999999999999999999999988742 2267899999
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
++|+|||.||+.++....... .+. + .......+..+|+.+|+....++.|
T Consensus 94 L~p~LsVaeNifLgre~~~~~---g~i----------------d-----------~~~m~~~A~~~l~~lg~~~~~~~~v 143 (500)
T COG1129 94 LVPNLSVAENIFLGREPTRRF---GLI----------------D-----------RKAMRRRARELLARLGLDIDPDTLV 143 (500)
T ss_pred ccCCccHHHHhhcccccccCC---Ccc----------------C-----------HHHHHHHHHHHHHHcCCCCChhhhh
Confidence 999999999998875432100 000 0 0112335677899999965578888
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++ ||+||||.|+|||||..++++|||||||++++..-.+.|.++++++ ++..+|.++|.+++++++||+|.||
T Consensus 144 ~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 144 GD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 76 9999999999999999999999999999988777666666666544 5777888889999999999999999
Q ss_pred eCCEEEEecCH
Q 044321 382 SNGHIVYQGPR 392 (521)
Q Consensus 382 ~~G~iv~~G~~ 392 (521)
.+|++|..++.
T Consensus 219 RDG~~v~~~~~ 229 (500)
T COG1129 219 RDGRVVGTRPT 229 (500)
T ss_pred eCCEEeeeccc
Confidence 99999988873
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=298.70 Aligned_cols=189 Identities=21% Similarity=0.252 Sum_probs=147.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---------------------CceeeecCCc--cccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---------------------KNRCDISQHD--VHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---------------------~~~~~v~q~d--~~~~~ 227 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++... ...+|++|+. .+++.
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 579999999999999999999999999999999999874210 0136888875 36778
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
+||.||+.++........ . ..+....+..+|+.+||. ...++.++
T Consensus 379 ~tv~e~l~~~~~~~~~~~--------~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 424 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTL--------S------------------------AAQREQQVIAVMEEVGLDPETRHRYPA-- 424 (529)
T ss_pred ccHHHHHHHHHHhccccC--------C------------------------hHHHHHHHHHHHHHcCCCHHHHhcCCc--
Confidence 999999987643211000 0 001112456789999997 45666554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+.++||+|++|++
T Consensus 425 ---~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 425 ---EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred ---cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 59999999999999999999999999999998887666666655432 245666778999999999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 502 G~i~~~~~~~~~~ 514 (529)
T PRK15134 502 GEVVEQGDCERVF 514 (529)
T ss_pred CEEEEEcCHHHHh
Confidence 9999999988873
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=295.44 Aligned_cols=185 Identities=27% Similarity=0.319 Sum_probs=146.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+||
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence 4699999999999999999999999999999999999876421 13688898888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.+|+.++......+. . + ..+....+..+++.+||.+..++.++ .
T Consensus 97 ~~~l~~~~~~~~~~~-------~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (501)
T PRK11288 97 AENLYLGQLPHKGGI-------V-------------N-----------RRLLNYEAREQLEHLGVDIDPDTPLK-----Y 140 (501)
T ss_pred HHHHHhcccccccCC-------C-------------C-----------HHHHHHHHHHHHHHcCCCCCcCCchh-----h
Confidence 999988531100000 0 0 00112245678999999876666654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||+|++|++|+++.
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998887777766665543 35567777888889999999999999999987
Q ss_pred ecC
Q 044321 389 QGP 391 (521)
Q Consensus 389 ~G~ 391 (521)
.++
T Consensus 221 ~~~ 223 (501)
T PRK11288 221 TFD 223 (501)
T ss_pred ecC
Confidence 765
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=264.16 Aligned_cols=190 Identities=25% Similarity=0.304 Sum_probs=136.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..++ ..||.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~ 92 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDTIG 92 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cchHH
Confidence 3599999999999999999999999999999999999876532 136888876655 57999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.+.... ... . .+.... .. ......+..+ +...++.+. ..++.|
T Consensus 93 ~nl~~~~~~--~~~-~----~~~~~~---------------~~---------~~l~~~~~~l--~~~~~~~~~-~~~~~L 138 (236)
T cd03253 93 YNIRYGRPD--ATD-E----EVIEAA---------------KA---------AQIHDKIMRF--PDGYDTIVG-ERGLKL 138 (236)
T ss_pred HHHhhcCCC--CCH-H----HHHHHH---------------HH---------cCcHHHHHhc--cccccchhh-cCCCcC
Confidence 999775211 000 0 000000 00 0012223333 212222222 234579
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+++|++++|+...+. .||++++|++|++++.|
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV-NADKIIVLKDGRIVERG 217 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEeeC
Confidence 999999999999999999999999999999988887777776543 2455666677777775 49999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+.+++.
T Consensus 218 ~~~~~~ 223 (236)
T cd03253 218 THEELL 223 (236)
T ss_pred CHHHHh
Confidence 987764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=325.75 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=160.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~ 231 (521)
++.+|+||||.|.+||+++|+||||||||||+++|+|++.|+.+ ..+|++|++.+++.+||+
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 35799999999999999999999999999999999999887531 127899999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
|++.|.++..+... .+.+..++.+|+.+||.+..++.++ .|
T Consensus 1022 E~L~f~~~lkg~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 1062 (2272)
T TIGR01257 1022 EHILFYAQLKGRSW----------------------------------EEAQLEMEAMLEDTGLHHKRNEEAQ-----DL 1062 (2272)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hC
Confidence 99999766543211 0112245678999999988887765 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||||+||+||+++|++|||||||+++|....+.+.+++++. .+.+||+++|+.+++..+||+|++|++|++++.|
T Consensus 1063 SGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999888777776666544 3556777788999999999999999999999999
Q ss_pred CHhHHHHHH
Q 044321 391 PREYVLEFF 399 (521)
Q Consensus 391 ~~~~v~~~f 399 (521)
+++.+...|
T Consensus 1143 s~~~Lk~~~ 1151 (2272)
T TIGR01257 1143 TPLFLKNCF 1151 (2272)
T ss_pred CHHHHHHhc
Confidence 999987655
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=260.13 Aligned_cols=169 Identities=22% Similarity=0.209 Sum_probs=133.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+.|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence 4699999999999999999999999999999999999887532 1257777777778899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+. .....++.+++.+||.+..++.++ .||
T Consensus 94 ~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 131 (204)
T PRK13538 94 NLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVPVR-----QLS 131 (204)
T ss_pred HHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCChh-----hcC
Confidence 99876432110 001235668899999877776654 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+...+....++++++
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999888777777766543 3455666777777777767777776
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=264.20 Aligned_cols=177 Identities=25% Similarity=0.253 Sum_probs=131.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|.+.|..+ ..+|++|+..++ ..||+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~ 95 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIR 95 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cchHH
Confidence 3599999999999999999999999999999999999877532 126788876655 46999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-------ccccccc
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-------CADTMVG 304 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-------~~dt~vg 304 (521)
||+.+.... ... .+..+++.+++.+ ..++..+
T Consensus 96 enl~~~~~~----~~~-------------------------------------~~~~~~~~~~l~~~~~~l~~~l~~~~~ 134 (221)
T cd03244 96 SNLDPFGEY----SDE-------------------------------------ELWQALERVGLKEFVESLPGGLDTVVE 134 (221)
T ss_pred HHhCcCCCC----CHH-------------------------------------HHHHHHHHhCcHHHHHhcccccccccc
Confidence 988643110 000 0111122222221 1222222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++. .||++++|++
T Consensus 135 -~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~ 212 (221)
T cd03244 135 -EGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII-DSDRILVLDK 212 (221)
T ss_pred -cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEEC
Confidence 245679999999999999999999999999999999988888877777653 2456666777777775 4999999999
Q ss_pred CEEEEecC
Q 044321 384 GHIVYQGP 391 (521)
Q Consensus 384 G~iv~~G~ 391 (521)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 99998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=294.19 Aligned_cols=212 Identities=17% Similarity=0.246 Sum_probs=154.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHH-hc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSAR-CQ 241 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~-~~ 241 (521)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||.|++.++.. ..
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 93 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELW 93 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHH
Confidence 4699999999999999999999999999999999999887532 13788998888889999999987531 00
Q ss_pred cCchhhHHHHHHHHHHHhcCCC---CCCC--hHHHH-HHHhhhchhhhhHHHHHHHHcCCCccc-cccccCccCCCCChH
Q 044321 242 GVGSRYEMLAELTRREKAAGIK---PDPD--IDVFM-KAAATEGQEVSVITDYILKILGLDVCA-DTMVGDEILRGISGG 314 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~---~~~~--~~~~~-~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~~~r~LSGG 314 (521)
.. . .......... .... ..... ......+.+....+..+|+.+||.+.. +..+ ..||||
T Consensus 94 ~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgG 159 (530)
T PRK15064 94 EV------K---QERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM-----SEVAPG 159 (530)
T ss_pred HH------H---HHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch-----hhcCHH
Confidence 00 0 0000000000 0000 00000 000111122234567899999997643 3344 459999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHh
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPRE 393 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~ 393 (521)
|||||+||++|+.+|++|||||||+++|......+.+++.+. +.+||+++|+...+.++||+|++|++|++ ++.|+++
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER-NSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 999999999999999999999999999999999999988754 45566677888889999999999999999 5899988
Q ss_pred HHHH
Q 044321 394 YVLE 397 (521)
Q Consensus 394 ~v~~ 397 (521)
++++
T Consensus 239 ~~~~ 242 (530)
T PRK15064 239 EYMT 242 (530)
T ss_pred HHHH
Confidence 7653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=258.17 Aligned_cols=195 Identities=27% Similarity=0.347 Sum_probs=158.6
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-------------------eeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-------------------CDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-------------------~~v~q~d~~ 224 (521)
..+.++.+.||+|||+.|++|.+|+|+|||||||||||.+++.+++.+.+.. ..+-|....
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i 86 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI 86 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh
Confidence 3455677889999999999999999999999999999999999887653211 233455555
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
...+||+|-+.|+.-...-+. + ..+.+..++..++.|+|.+..|.++.
T Consensus 87 ~~rlTV~dLv~FGRfPYSqGR-------l-------------------------t~eD~~~I~~aieyl~L~~l~dryLd 134 (252)
T COG4604 87 NSRLTVRDLVGFGRFPYSQGR-------L-------------------------TKEDRRIINEAIEYLHLEDLSDRYLD 134 (252)
T ss_pred hheeEHHHHhhcCCCcccCCC-------C-------------------------chHHHHHHHHHHHHhcccchHHHhHH
Confidence 668999999999742211110 0 11234467888999999998887765
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+||||||||.-||..|+.+.+.++||||.+.+| .++++.|+++++++++|+++++ |+...+..++|+|+-
T Consensus 135 -----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVl-HDINfAS~YsD~IVA 208 (252)
T COG4604 135 -----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-HDINFASCYSDHIVA 208 (252)
T ss_pred -----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEE-ecccHHHhhhhheee
Confidence 599999999999999999999999999999655 5799999999999988888765 677889999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|.+|+++.+|+++++.
T Consensus 209 lK~G~vv~~G~~~eii 224 (252)
T COG4604 209 LKNGKVVKQGSPDEII 224 (252)
T ss_pred ecCCEEEecCCHHHhc
Confidence 9999999999999985
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=255.46 Aligned_cols=152 Identities=36% Similarity=0.585 Sum_probs=120.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CCCC---------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SSLK---------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~~~---------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++. +..+ ..+|++|++.+++.+|++||
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 469999999999999999999999999999999999753 3211 12566776666777788777
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+... ++ .|||
T Consensus 100 l~~~~~--------------------------------------------------~~------------------~LSg 111 (192)
T cd03232 100 LRFSAL--------------------------------------------------LR------------------GLSV 111 (192)
T ss_pred HHHHHH--------------------------------------------------Hh------------------cCCH
Confidence 765310 00 4999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChh-HHHhhcCeEEEEeC-CEEEEe
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAP-ETYDLFDDIILISN-GHIVYQ 389 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~-~~~~l~D~VivL~~-G~iv~~ 389 (521)
||+|||+||+||+.+|++|||||||+++|......+.+++.+. .++++++++|+.+ ++.+.||+|++|++ |++++.
T Consensus 112 Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 9999999999999999999999999998887777766665443 2455566667666 47889999999999 999987
Q ss_pred c
Q 044321 390 G 390 (521)
Q Consensus 390 G 390 (521)
|
T Consensus 192 g 192 (192)
T cd03232 192 G 192 (192)
T ss_pred C
Confidence 6
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=270.79 Aligned_cols=175 Identities=26% Similarity=0.367 Sum_probs=148.0
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCCCHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++|.++.-.+|||.|+||||||||+|+|+|+..|+.+ ..+||+|+-.+||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68888888689999999999999999999999988632 1299999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
||.|+..... ....+.+...+|+.|..+.++. .||
T Consensus 96 NL~YG~~~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~-----~LS 130 (352)
T COG4148 96 NLRYGMWKSM----------------------------------------RAQFDQLVALLGIEHLLDRYPG-----TLS 130 (352)
T ss_pred chhhhhcccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCC-----ccC
Confidence 9999853210 0123668889999999987665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||+|||||+..|++|+||||.+++|. +++-.|..+.++.+ .-|+.++|...|+.+++|+|++|++|++..
T Consensus 131 GGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~-IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred cchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC-CCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 9999999999999999999999999998775 56666666665544 456667788999999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+.+++.
T Consensus 210 ~g~~e~v~ 217 (352)
T COG4148 210 SGPLEEVW 217 (352)
T ss_pred cCcHHHHh
Confidence 99999985
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=292.44 Aligned_cols=213 Identities=23% Similarity=0.254 Sum_probs=155.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHh-c
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARC-Q 241 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~-~ 241 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||+.++... .
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~ 97 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIK 97 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence 4699999999999999999999999999999999999887532 237999998888899999999875321 0
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCCh-------HHHHHHH-hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDI-------DVFMKAA-ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~-------~~~~~~~-~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+. ...+........ .+..+. ..+.... ..........+..+++.+|+.. .++.++ .|||
T Consensus 98 ~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~-----~LSg 164 (552)
T TIGR03719 98 DA------LDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVT-----KLSG 164 (552)
T ss_pred HH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchh-----hcCH
Confidence 00 000000000000 000000 0000000 0111122345677888999954 455554 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCH
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPR 392 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~ 392 (521)
||||||+||++|+.+|++|||||||+++|....+.|.+++...++ +||+++|+...+..+||+|++|++|+++ +.|+.
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~-tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG-TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 999999999999999999999999999999999999998877665 5666778888999999999999999976 78988
Q ss_pred hHHHH
Q 044321 393 EYVLE 397 (521)
Q Consensus 393 ~~v~~ 397 (521)
+++.+
T Consensus 244 ~~~~~ 248 (552)
T TIGR03719 244 SSWLE 248 (552)
T ss_pred HHHHH
Confidence 87543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=267.49 Aligned_cols=188 Identities=24% Similarity=0.301 Sum_probs=135.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
..+|+||||+|++|++++|+|+||||||||+++|+|+++|..+ ..+|++|+..+++ .|++
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~ 112 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIR 112 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHH
Confidence 3599999999999999999999999999999999999876522 1267777765554 5888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
+|+.+.... ... . ...+.. .......++.+ |++. .++ ..+.
T Consensus 113 ~nl~~~~~~----~~~----~------------------~~~~l~------~~~l~~~~~~~~~~l~~----~~~-~~~~ 155 (257)
T cd03288 113 FNLDPECKC----TDD----R------------------LWEALE------IAQLKNMVKSLPGGLDA----VVT-EGGE 155 (257)
T ss_pred HhcCcCCCC----CHH----H------------------HHHHHH------HhCcHHHHhhcccccCc----Eec-cCCC
Confidence 876432100 000 0 000000 00112234443 4443 332 2456
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
.||||||||++|||||+.+|++|||||||+++|....+.+.+++... .+.++|+++|+...+.. ||+|++|++|++++
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE 234 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence 79999999999999999999999999999999988887777766543 34556666777777765 99999999999999
Q ss_pred ecCHhHHHH
Q 044321 389 QGPREYVLE 397 (521)
Q Consensus 389 ~G~~~~v~~ 397 (521)
.|+++++.+
T Consensus 235 ~g~~~~~~~ 243 (257)
T cd03288 235 CDTPENLLA 243 (257)
T ss_pred eCCHHHHHh
Confidence 999887743
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-32 Score=294.93 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=147.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-CCC--------------------ceeeecCCc---ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-SLK--------------------NRCDISQHD---VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-~~~--------------------~~~~v~q~d---~~~ 225 (521)
++.+|+||||+|++|++++|+||||||||||+++|+|+++| +.+ ..+|++|+. ..+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35699999999999999999999999999999999999873 310 136788874 367
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-cccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 304 (521)
+.+||.||+.+......... +. .+ ..+....++.+++.+||. +..++.++
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~---------------~~---~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 404 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGG---------------SR---ID-----------DAAELKTILESIQRLKVKTASPELAIA 404 (506)
T ss_pred CCCCHHHHhhhhhhhhhccC---------------cc---cC-----------hHHHHHHHHHHHHhcCccCCCcccccc
Confidence 78999999987531000000 00 00 001112456789999996 56676665
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++..+ .+++||+++|+..++.++||++++|+
T Consensus 405 -----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 405 -----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred -----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999998887777766665432 35667778899999999999999999
Q ss_pred CCEEEEecCHhHH
Q 044321 383 NGHIVYQGPREYV 395 (521)
Q Consensus 383 ~G~iv~~G~~~~v 395 (521)
+|+++..|+++++
T Consensus 480 ~G~i~~~~~~~~~ 492 (506)
T PRK13549 480 EGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEEeccccC
Confidence 9999999987664
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=260.11 Aligned_cols=173 Identities=22% Similarity=0.226 Sum_probs=133.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------~~~~v~q~d~ 223 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 4699999999999999999999999999999999999876411 1257788777
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-cccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTM 302 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~ 302 (521)
+++.+||.|++.+.....+... .+....+..+++.+||.+. .+..
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 146 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPR----------------------------------EAARARARELLARLNIPERLWHLP 146 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhhCC
Confidence 7888899999877533211100 0011234567888999753 3544
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+ ..||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+...+..+||+++.
T Consensus 147 ~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 147 P-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence 4 469999999999999999999999999999998888777777666543 245666677887778889999987
Q ss_pred Ee
Q 044321 381 IS 382 (521)
Q Consensus 381 L~ 382 (521)
+.
T Consensus 222 ~~ 223 (224)
T TIGR02324 222 VT 223 (224)
T ss_pred cC
Confidence 63
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=321.67 Aligned_cols=240 Identities=18% Similarity=0.205 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC--CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI--SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~--~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.+....+++|+.++++.++|... ..+.... ..| ..+|+|+|+++.|..
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~-----~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1296 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPW-----QIQETAPPSGWPPRGRVEFRNYCLRYRE------------------------ 1296 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCccc-----cccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 56777889999999876655210 0000001 112 357999999999731
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
+...+|+||||+|+|||.+||+|++|||||||+++|.|+++|+.+ ..++|+|+
T Consensus 1297 --------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1297 --------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred --------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 112599999999999999999999999999999999999988632 12789998
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+.+|. .|+++||..... . +.+...++....+ ..+.+ . .+++.+||
T Consensus 1369 p~LF~-gTIr~NLdp~~~----~----------------------sdeei~~al~~a~-----l~~~I-~--~lp~GLdt 1413 (1522)
T TIGR00957 1369 PVLFS-GSLRMNLDPFSQ----Y----------------------SDEEVWWALELAH-----LKTFV-S--ALPDKLDH 1413 (1522)
T ss_pred CcccC-ccHHHHcCcccC----C----------------------CHHHHHHHHHHcC-----cHHHH-h--hCccCCCc
Confidence 87765 699999973210 0 1111111111110 11111 1 35677899
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
.||+ .+..||||||||++|||||+++|+||+|||||+++|.+.-+.+.+.+++. .+.|+|+++|.. .+...||+|++
T Consensus 1414 ~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl-~ti~~~DrIlV 1491 (1522)
T TIGR00957 1414 ECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL-NTIMDYTRVIV 1491 (1522)
T ss_pred eecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHHhCCEEEE
Confidence 9986 45679999999999999999999999999999988887777776666543 344455555655 45567999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+|++.|+++++++
T Consensus 1492 ld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1492 LDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=267.04 Aligned_cols=188 Identities=21% Similarity=0.258 Sum_probs=135.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++ .||+||+.+..... .
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~---~ 126 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYD---E 126 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccC---H
Confidence 489999999999999999999999999999999999887643 1478999876665 59999998742110 0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
. ..... .... .....++.+ ....++.++ ..+..|||||||||+||++|
T Consensus 127 -~----~~~~~---------------l~~~---------~l~~~l~~~--~~~~~~~~~-~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 127 -Y----RYKSV---------------VKAC---------QLEEDITKF--PEKDNTVLG-EGGITLSGGQRARISLARAV 174 (282)
T ss_pred -H----HHHHH---------------HHHh---------CCHHHHHhc--cccccceec-CCCCcCCHHHHHHHHHHHHH
Confidence 0 00000 0000 001122222 222333333 24567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHH-HHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQF-IHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+.+|++|||||||+++|....+.+.+. +... .+.+|++++|+...+ ..||++++|++|++++.|+++++.
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998877766543 2221 245556667777666 589999999999999999988874
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=293.40 Aligned_cols=183 Identities=23% Similarity=0.281 Sum_probs=149.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCcc--ccCCCCHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDV--HIGEMTVRETLAFSA 238 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~--~~~~lTV~E~l~f~~ 238 (521)
+.+.+|+|+||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+.. +++.+|+.+++.+..
T Consensus 330 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 345799999999999999999999999999999999999877632 2378999753 445789999875421
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQ 317 (521)
. . . .....++.+|+.+|+. +..++.++ .|||||||
T Consensus 410 ~---~-~-----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~q 445 (530)
T PRK15064 410 Q---E-G-----------------------------------DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEKG 445 (530)
T ss_pred c---C-C-----------------------------------ccHHHHHHHHHHcCCChhHhcCccc-----ccCHHHHH
Confidence 0 0 0 0012345688899994 56666665 59999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHH
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVL 396 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~ 396 (521)
||+||++|+.+|++|||||||+++|....+.+.+++...++ +||+++|+.+.+..+||+|++|++|+++ +.|++++++
T Consensus 446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEG-TLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999999999999998887765 5666778888999999999999999998 889887764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=255.33 Aligned_cols=152 Identities=38% Similarity=0.610 Sum_probs=120.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC----------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK----------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~----------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++ +|..+ ..+|++|+...++.+|++|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 46999999999999999999999999999999999998 66421 1256666666666677777
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+... + ..||
T Consensus 102 ~i~~~~~-------------------------------------------------------~-------------~~LS 113 (194)
T cd03213 102 TLMFAAK-------------------------------------------------------L-------------RGLS 113 (194)
T ss_pred HHHHHHH-------------------------------------------------------h-------------ccCC
Confidence 6654210 0 0499
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChh-HHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAP-ETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~-~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.. ++.++||++++|++|++++.
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999998887777776666543 2445555666664 68889999999999999876
Q ss_pred c
Q 044321 390 G 390 (521)
Q Consensus 390 G 390 (521)
|
T Consensus 194 ~ 194 (194)
T cd03213 194 G 194 (194)
T ss_pred C
Confidence 5
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=260.73 Aligned_cols=171 Identities=21% Similarity=0.264 Sum_probs=137.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCccccCCCCHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|.+.+++.+|+.||+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence 3699999999999999999999999999999999999877531 136888887777888999998
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+.....+. .....+..+++.+||.+..++.++ .||||
T Consensus 104 ~~~~~~~~~-------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (214)
T PRK13543 104 HFLCGLHGR-------------------------------------RAKQMPGSALAIVGLAGYEDTLVR-----QLSAG 141 (214)
T ss_pred HHHHHhcCC-------------------------------------cHHHHHHHHHHHcCChhhccCChh-----hCCHH
Confidence 875322110 001123557888999877777665 59999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|||||+||++++.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..++.++||++++|+.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999988877777766533 345666778888899999999999863
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=257.87 Aligned_cols=166 Identities=20% Similarity=0.180 Sum_probs=132.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+|+||+|++|++++|+|+||||||||+++|+|+++|..+ ..+|++|+..+++.+|++|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 4699999999999999999999999999999999999876521 1267777777777889999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+..... ....++.+++.+||.+..++.+. .||
T Consensus 93 ~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 127 (201)
T cd03231 93 NLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRPVA-----QLS 127 (201)
T ss_pred HHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCchh-----hCC
Confidence 887642100 01134668888999877776654 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
||||||++||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..+....|++++++
T Consensus 128 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999999888777777766543 2445555667667788899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=293.55 Aligned_cols=212 Identities=23% Similarity=0.270 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+.+|+.++++.+++.-. .+............+|+|+||+|.|.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~~~I~~~~vsf~Y~---------------------------- 345 (529)
T TIGR02868 297 LTRVRAAAERIEEVTGAKGPRPE---GVVPAAGALGLGKPTLELRDLSFGYP---------------------------- 345 (529)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCC---CCCCCCcccCCCCceEEEEEEEEecC----------------------------
Confidence 56677888999888876654100 00000000111124699999999862
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCcccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHI 225 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~ 225 (521)
.+..+|+|+||+|++|+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.+|
T Consensus 346 -----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF 420 (529)
T TIGR02868 346 -----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF 420 (529)
T ss_pred -----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc
Confidence 112499999999999999999999999999999999999988632 237899987655
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.|++|||.++.. +.+.+.+.++....+ ..+.+ -.|++.+||.+|+
T Consensus 421 -~~TI~eNI~~g~~-------------------------~~~~e~i~~al~~a~-----l~~~i---~~lp~GldT~ige 466 (529)
T TIGR02868 421 -DTTVRDNLRLGRP-------------------------DATDEELWAALERVG-----LADWL---RSLPDGLDTVLGE 466 (529)
T ss_pred -cccHHHHHhccCC-------------------------CCCHHHHHHHHHHcC-----CHHHH---HhCcccccchhcc
Confidence 6799999998621 111122222221111 11121 2377889999997
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEec
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQ 366 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h 366 (521)
....||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... +.|+|+++|+
T Consensus 467 -~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 467 -GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred -ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 45679999999999999999999999999999999888887777766544 3455555543
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=252.20 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=155.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~ 227 (521)
+...+|+|+||+|.|||+-+|+|||||||||+|.+|+|..+|..+ +.+--+|.+..|..
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 446799999999999999999999999999999999999887621 11334677888999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+|||..+.+... ..+..+..+. ..+.+.+++++|...||.+.++...+.
T Consensus 96 ltV~eNLelA~~~~k-----~v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~~-- 147 (249)
T COG4674 96 LTVRENLELALNRDK-----SVFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAAL-- 147 (249)
T ss_pred ccHHHHHHHHhcCCc-----chHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhhh--
Confidence 999999998754321 1122221111 112345789999999999999888775
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
||.||||++.|+..|+++|++|++|||+++++.+-....-++++.+ ++..|+++.|++..+..++++|.+|++|.+
T Consensus 148 ---LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 148 ---LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred ---hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccce
Confidence 9999999999999999999999999999976554444333333332 466788889999999999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
...|+.+++.
T Consensus 225 L~EGsld~v~ 234 (249)
T COG4674 225 LAEGSLDEVQ 234 (249)
T ss_pred eecccHHHhh
Confidence 9999998874
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-31 Score=255.15 Aligned_cols=181 Identities=21% Similarity=0.254 Sum_probs=120.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|.. .|. .+..++...+. ......+.. ...+..+++...
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~--~~~~~~~~~--~~~i~~v~q~~~ 87 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDI--TDLPPEERA--RLGIFLAFQYPP 87 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEEC--CcCCHHHHh--hCcEEEeecChh
Confidence 46999999999999999999999999999999999985 343 34445544322 111111100 000111111100
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
.+ +.. .+...++ .....|||||||||+||+||+.+
T Consensus 88 ~~-------------~~~------------------~~~~~l~--------------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 88 EI-------------PGV------------------KNADFLR--------------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred hc-------------cCc------------------cHHHHHh--------------hccccCCHHHHHHHHHHHHHhcC
Confidence 00 000 0111111 11236999999999999999999
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHh-hcCeEEEEeCCEEEEecCHhHHHHHHHHc
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYD-LFDDIILISNGHIVYQGPREYVLEFFKFM 402 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~-l~D~VivL~~G~iv~~G~~~~v~~~f~~~ 402 (521)
|++|||||||+++|....+.+.+++.+. .+.++++++|+...+.. +||++++|++|++++.|+.+ +.++|...
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~~~ 198 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE-LALEIEKK 198 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH-HHhhhccc
Confidence 9999999999998877776666655443 24556666777777777 79999999999999999555 55555433
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-31 Score=318.35 Aligned_cols=189 Identities=20% Similarity=0.210 Sum_probs=142.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+||||+|+|||.+||+|++|||||||+++|.|+++|..+ ..++|+|++.+|. .||++
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-gTIre 1402 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-GTVRQ 1402 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc-ccHHH
Confidence 599999999999999999999999999999999999988632 1289999887664 69999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
||..... .+.+.+..+....+ ..+.+ -.|++.+||.||+ .+..||
T Consensus 1403 NIdp~~~--------------------------~sdeeI~~Al~~a~-----l~~~I---~~lp~Gldt~vge-~G~nLS 1447 (1560)
T PTZ00243 1403 NVDPFLE--------------------------ASSAEVWAALELVG-----LRERV---ASESEGIDSRVLE-GGSNYS 1447 (1560)
T ss_pred HhCcccC--------------------------CCHHHHHHHHHHCC-----ChHHH---hhCcccccccccC-CcCcCC
Confidence 9964210 01111222221111 11111 1367788999986 556799
Q ss_pred hHHHHHHHHHHHHcCC-CcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGP-AQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~-P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||++|||||+++ |+||||||||+++|.+.-+.+.+.+.+. ...|+|++.|.. .+...||+|++|++|+|++.|
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl-~ti~~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRL-HTVAQYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999995 8999999999988777777776665543 344455555655 566789999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++++
T Consensus 1527 t~~eLl~ 1533 (1560)
T PTZ00243 1527 SPRELVM 1533 (1560)
T ss_pred CHHHHHh
Confidence 9999863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=292.04 Aligned_cols=189 Identities=16% Similarity=0.257 Sum_probs=145.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCC---ccccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQH---DVHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~---d~~~~~l 228 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+ ..+++.+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 489999999999999999999999999999999999876421 12788887 3567889
Q ss_pred CHHHHHHHHHHhc--cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 229 TVRETLAFSARCQ--GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 229 TV~E~l~f~~~~~--~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
||.||+.+..... +....+ +.. . .......++.+++.+||. +..++.++
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~-------------~~~---~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 408 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAM-------------GLF---H-----------EVDEQRTAENQRELLALKCHSVNQNIT- 408 (510)
T ss_pred cHHHHhccccccccccccccc-------------ccc---C-----------hHHHHHHHHHHHHhcCCCCCCccCccc-
Confidence 9999998753211 000000 000 0 000112356789999996 67777766
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.++++.. .+.+||+++|+...+..+||++++|++
T Consensus 409 ----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 409 ----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred ----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 49999999999999999999999999999998888777776666432 345677778888899999999999999
Q ss_pred CEEEEecCH
Q 044321 384 GHIVYQGPR 392 (521)
Q Consensus 384 G~iv~~G~~ 392 (521)
|++++.++.
T Consensus 485 G~i~~~~~~ 493 (510)
T PRK09700 485 GRLTQILTN 493 (510)
T ss_pred CEEEEEecC
Confidence 999988865
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=260.86 Aligned_cols=177 Identities=21% Similarity=0.330 Sum_probs=131.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .||.|
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~ 106 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQD 106 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHH
Confidence 599999999999999999999999999999999999876532 1267777765554 68888
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILRG 310 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r~ 310 (521)
|+.+...... . ..+.... ....+..+++.+ |+....+..+ ..
T Consensus 107 nl~~~~~~~~----~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~-----~~ 150 (226)
T cd03248 107 NIAYGLQSCS----F---ECVKEAA------------------------QKAHAHSFISELASGYDTEVGEKG-----SQ 150 (226)
T ss_pred HhccccCCCC----H---HHHHHHH------------------------HHcCcHHHHHhccccccchhhcCC-----Cc
Confidence 8876432100 0 0000000 001234567777 6765555444 56
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|||||||||+||++|+.+|++|||||||+++|....+.+.+++.+. +.+++++++|+..++. .||+|++|++|++
T Consensus 151 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 9999999999999999999999999999999988888877776553 3356666677777775 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=315.83 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCc-eeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT-IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+.+..+.+|++++++.+++. .. ...+..++. .+|+|+||++.+..
T Consensus 348 ~~~a~~a~~ri~~ii~~~~~~-----~~--~~~~~~~~~~~~I~~~nVsf~Y~~-------------------------- 394 (1466)
T PTZ00265 348 YMKSLEATNSLYEIINRKPLV-----EN--NDDGKKLKDIKKIQFKNVRFHYDT-------------------------- 394 (1466)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CC--CCCCccCCCCCcEEEEEEEEEcCC--------------------------
Confidence 566788889999999877651 11 111222222 27999999998621
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD 222 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d 222 (521)
....++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 395 -----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~ 469 (1466)
T PTZ00265 395 -----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP 469 (1466)
T ss_pred -----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccc
Confidence 1123699999999999999999999999999999999999987531 127899987
Q ss_pred cccCCCCHHHHHHHHHHhc-cC---chhhHHH----HHH-----HHHHH----hcCCCCCCChHHHHHHHhhhchhhhhH
Q 044321 223 VHIGEMTVRETLAFSARCQ-GV---GSRYEML----AEL-----TRREK----AAGIKPDPDIDVFMKAAATEGQEVSVI 285 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~-~~---~~~~~~~----~~l-----~~~e~----~~~i~~~~~~~~~~~~~~~~~~~~~~~ 285 (521)
.+|+ .|++||+.++.... .. ...+... .+. ...++ ...+....+...+.+............
T Consensus 470 ~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 548 (1466)
T PTZ00265 470 LLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSE 548 (1466)
T ss_pred cchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHH
Confidence 7775 69999999863110 00 0000000 000 00000 000000000000000000000000112
Q ss_pred HHHHHHHc-------CCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--
Q 044321 286 TDYILKIL-------GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-- 356 (521)
Q Consensus 286 ~~~iL~~l-------gL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-- 356 (521)
+..+++.+ .|++.+||.+|+ .+..|||||||||+|||||+.+|+||||||||+++|......+.+.+.+.
T Consensus 549 v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~ 627 (1466)
T PTZ00265 549 VVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627 (1466)
T ss_pred HHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhh
Confidence 22333333 466778999986 46789999999999999999999999999999998887777776666544
Q ss_pred -CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 357 -EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 357 -~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.+.++|+++|+...+ +.||+|++|++|
T Consensus 628 ~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 628 NENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred cCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 234555566666554 789999999986
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=254.81 Aligned_cols=168 Identities=24% Similarity=0.276 Sum_probs=129.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCccccCCCCHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++..++.+|+.||+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l 94 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL 94 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence 4699999999999999999999999999999999999876521 125777777677788999998
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+.....+. ....+.++++.+||.+..+..++ .||||
T Consensus 95 ~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 131 (207)
T PRK13539 95 EFWAAFLGG--------------------------------------EELDIAAALEAVGLAPLAHLPFG-----YLSAG 131 (207)
T ss_pred HHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHcCChh-----hcCHH
Confidence 764322110 00124568889999876666554 59999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||||++||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.. |+++.+..
T Consensus 132 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 132 QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 999999999999999999999999998887777766666543 34566666777777765 88887743
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=274.61 Aligned_cols=169 Identities=27% Similarity=0.335 Sum_probs=136.7
Q ss_pred EEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 189 LLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 189 LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||+.|+.+..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~------ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR------ 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH------
Confidence 6899999999999999999877521 13789999888999999999998754322100
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+....++++++.+||.+..++.+. .|||||||||+|||||+.+|++
T Consensus 75 ----------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 75 ----------------------------AEIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred ----------------------------HHHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCE
Confidence 0011245678999999887776654 5999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|||||||+++|......+.+++.+. .++++|+++|+..++..+||+|++|++|+++..|+++++.
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999888777776665442 2556666788888999999999999999999999999884
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=261.10 Aligned_cols=180 Identities=22% Similarity=0.161 Sum_probs=136.2
Q ss_pred eeeeeEEEEe-----CCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------ceeeecCCccccCCCCHHHHHHHHHHh
Q 044321 173 ILKDVSGIIR-----PGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------NRCDISQHDVHIGEMTVRETLAFSARC 240 (521)
Q Consensus 173 iL~dVS~~I~-----~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------~~~~v~q~d~~~~~lTV~E~l~f~~~~ 240 (521)
.++|+++++. +|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+||.|++.+....
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhh
Confidence 5666666665 7999999999999999999999999887632 236888887667789999998654211
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
... ......++++.+||.+..++.++ .|||||||||+
T Consensus 89 ~~~--------------------------------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ 125 (246)
T cd03237 89 FYT--------------------------------------HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVA 125 (246)
T ss_pred ccc--------------------------------------cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHH
Confidence 000 00123457788999877776665 59999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE--EecCHhHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV--YQGPREYV 395 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv--~~G~~~~v 395 (521)
||+||+.+|+++||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|+++..+ ..+++..+
T Consensus 126 iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 999999999999999999998887776666655443 2566777788888899999999999765433 33455443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=289.94 Aligned_cols=185 Identities=18% Similarity=0.250 Sum_probs=148.7
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCc-cccCCCCHHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHD-VHIGEMTVRETLAFSAR 239 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d-~~~~~lTV~E~l~f~~~ 239 (521)
+.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. .+++.+||.|++.+...
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 345799999999999999999999999999999999999887632 137899985 57788999999987632
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQR 318 (521)
..+... . ......+++.+||.. ..++.++ .||||||||
T Consensus 415 ~~~~~~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qr 453 (556)
T PRK11819 415 IIKVGN---------------------R---------------EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGERNR 453 (556)
T ss_pred cccccc---------------------c---------------HHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHH
Confidence 211000 0 001234788899964 4566655 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC-CEEE-EecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN-GHIV-YQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~-G~iv-~~G~~~~v 395 (521)
|+||+||+.+|++|||||||+++|....+.+.+++....+| ||+++|+...+..+||+|++|++ |+++ +.|+.++.
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~t-vi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGC-AVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCe-EEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 99999999999999999999999999999999988877665 56678888899999999999986 7886 57776554
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=254.37 Aligned_cols=166 Identities=21% Similarity=0.255 Sum_probs=128.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .|++|
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 100 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRS 100 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHH
Confidence 589999999999999999999999999999999999876521 1378888775554 59999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+... .. .+ .+...++ + + ..+..||
T Consensus 101 ~l~~~~~---~~-----------------------~~---------------~~~~~l~---~----~-----~~~~~LS 127 (207)
T cd03369 101 NLDPFDE---YS-----------------------DE---------------EIYGALR---V----S-----EGGLNLS 127 (207)
T ss_pred HhcccCC---CC-----------------------HH---------------HHHHHhh---c----c-----CCCCcCC
Confidence 8864210 00 00 0111222 1 2 2345799
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||+|||+|||||+.+|++|||||||+++|....+.+.+++++. .+.++|+++|+...+.. ||++++|++|+++..|+
T Consensus 128 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999998888877777654 34566667777777755 99999999999998886
Q ss_pred H
Q 044321 392 R 392 (521)
Q Consensus 392 ~ 392 (521)
+
T Consensus 207 ~ 207 (207)
T cd03369 207 P 207 (207)
T ss_pred C
Confidence 3
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=248.66 Aligned_cols=158 Identities=22% Similarity=0.349 Sum_probs=110.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+|+||+|.+|++++|+||||||||||+++|+|+++|. .+...+...+.. ..+ ..+......+++...+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~--~~~----~~~~~~i~~~~q~~~~-- 84 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIK--KEP----EEVKRRIGYLPEEPSL-- 84 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcc--cch----HhhhccEEEEecCCcc--
Confidence 6999999999999999999999999999999999998775 233333332211 111 0111111111111000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+... ..+.+ .|||||+|||+||+||+.+|++
T Consensus 85 -----------~~~~t-----------------v~~~~--------------------~LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 85 -----------YENLT-----------------VRENL--------------------KLSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred -----------ccCCc-----------------HHHHh--------------------hcCHHHHHHHHHHHHHHcCCCE
Confidence 00000 00110 0999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|+|||||+++|....+.+.+++++. .++++++++|+..++.++||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999998887777776666543 346677778888888899999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=286.87 Aligned_cols=222 Identities=22% Similarity=0.302 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC-CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL-PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+..+..++|+.++++.+++.. +...... +...++|+|+++.++.
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~--------~~~~~~~~~~~~i~~~~v~f~y~~-------------------------- 332 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLA--------GKAPVTAAPAPSLEFSGLSVAYPG-------------------------- 332 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccC--------CCcCCCCCCCCeEEEEEEEEECCC--------------------------
Confidence 5566778888888887443210 0001111 1236999999998631
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
..+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.
T Consensus 333 ------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~ 406 (529)
T TIGR02857 333 ------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406 (529)
T ss_pred ------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc
Confidence 123589999999999999999999999999999999999988632 1288999876
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| ..|++||+.++... .+.+...++....+ ..+.++ .+++..||.+
T Consensus 407 lf-~~ti~~Ni~~~~~~-------------------------~~~~~i~~a~~~~~------l~~~i~--~lp~Gldt~v 452 (529)
T TIGR02857 407 LF-AGTIAENIRLARPD-------------------------ASDAEIRRALERAG------LDEFVA--ALPQGLDTLI 452 (529)
T ss_pred cc-CcCHHHHHhccCCC-------------------------CCHHHHHHHHHHcC------cHHHHH--hCcccccchh
Confidence 55 57999999875211 00011111111000 111222 3566789999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|+ ....||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... .+.++++++|+.. ....||+|++|
T Consensus 453 ~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~-~~~~~d~i~~l 529 (529)
T TIGR02857 453 GE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA-LAERADRIVVL 529 (529)
T ss_pred cc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHhCCEEEeC
Confidence 86 55679999999999999999999999999999998888777776666543 3344444556554 45789999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=267.07 Aligned_cols=201 Identities=26% Similarity=0.312 Sum_probs=154.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc---------------------eeeecCCc--ccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN---------------------RCDISQHD--VHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~---------------------~~~v~q~d--~~~ 225 (521)
....++++||+++++|+.++|+|.||||||||-.+|.+++++.... --.|+|++ .+-
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 4567999999999999999999999999999999999998775211 03456654 356
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
|.|||.+-+.-+.....+. + ...+...++.+.|+.+||+... -+
T Consensus 378 PRmtV~qII~EGL~vh~~~--------l------------------------s~~eR~~rv~~aL~EVGLDp~~----r~ 421 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPK--------L------------------------SAAERDQRVIEALEEVGLDPAT----RN 421 (534)
T ss_pred cccCHHHHhhhhhhhcCCC--------C------------------------CHHHHHHHHHHHHHHcCCChhH----hh
Confidence 7788888777665544321 0 1123345677789999997532 13
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+++..+|||||||++|||||+.+|++++||||||++|. ++++.|+++-++. +-.-++++|+...+..+||+|+||
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhceEEEE
Confidence 55677999999999999999999999999999996654 5666666665543 445555679999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHH
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVAD 414 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~ad 414 (521)
.+|+||++|+.+++ |..|....+..
T Consensus 501 ~~GkiVE~G~~~~i--------f~~P~~~YT~~ 525 (534)
T COG4172 501 RDGKIVEQGPTEAV--------FANPQHEYTRA 525 (534)
T ss_pred eCCEEeeeCCHHHH--------hcCCCcHHHHH
Confidence 99999999999999 55776654433
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=315.54 Aligned_cols=237 Identities=18% Similarity=0.191 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
..+...+++|+.++++.+++. ... ..........|+|+|++|.+..
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~-----~~~--~~~~~~~~~~I~~~~vsF~y~~--------------------------- 626 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERI-----LAQ--NPPLQPGAPAISIKNGYFSWDS--------------------------- 626 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccc-----ccc--cCCcCCCCCcEEEEeeEEEcCC---------------------------
Confidence 567888999999988765431 000 0001111236899999998631
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------ceeeecCCccccCCCCHHHHHHH
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
.....+|+||||+|++|+.++|+||+|||||||+++|.|.++|..+ ..+||+|++.++ +.|++|||.|
T Consensus 627 ----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf-~gTIreNI~f 701 (1495)
T PLN03232 627 ----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF-NATVRENILF 701 (1495)
T ss_pred ----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc-cccHHHHhhc
Confidence 0123589999999999999999999999999999999999988642 248999987655 5799999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+... .. + ....+.+++. ..+.+ -.|++..+|.||+. +.+||||||
T Consensus 702 g~~~----~~-e------------------~~~~vl~~~~--------L~~di---~~Lp~Gd~T~IGe~-G~~LSGGQk 746 (1495)
T PLN03232 702 GSDF----ES-E------------------RYWRAIDVTA--------LQHDL---DLLPGRDLTEIGER-GVNISGGQK 746 (1495)
T ss_pred CCcc----CH-H------------------HHHHHHHHhC--------CHHHH---HhCCCCCCceecCC-CcccCHHHH
Confidence 7321 00 0 0011111111 11111 24788899999985 557999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHH-HHHHH--cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR-QFIHI--LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~-~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
||++||||+..+|+||||||||+++|....+.+. +++.. .++|+|+++ |.. .....||+|++|++|++++.|+++
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvT-H~~-~~l~~aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-NQL-HFLPLMDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEE-CCh-hhHHhCCEEEEEeCCEEEEecCHH
Confidence 9999999999999999999999999987666543 33322 245666655 444 456789999999999999999999
Q ss_pred HHH
Q 044321 394 YVL 396 (521)
Q Consensus 394 ~v~ 396 (521)
++.
T Consensus 825 eL~ 827 (1495)
T PLN03232 825 ELS 827 (1495)
T ss_pred HHH
Confidence 886
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=290.37 Aligned_cols=191 Identities=18% Similarity=0.274 Sum_probs=146.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc---cccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD---VHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d---~~~~~l 228 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. .+++.+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 489999999999999999999999999999999999876421 125778874 377889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
|+.||+.++........ +... . .......+..+++.+||. +..++.+++
T Consensus 347 tv~e~l~~~~~~~~~~~---------------~~~~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 396 (501)
T PRK11288 347 SVADNINISARRHHLRA---------------GCLI--N-----------NRWEAENADRFIRSLNIKTPSREQLIMN-- 396 (501)
T ss_pred CHHHHhccccchhhccc---------------cccc--C-----------hHHHHHHHHHHHHhcCcccCCccCcccc--
Confidence 99999877532110000 0000 0 000112356789999994 667777764
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.++ .+.+||+++|+..++.++||++++|++|+
T Consensus 397 ---LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 397 ---LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred ---CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999888777776665433 24556777889999999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 474 i~~~~~~~~~ 483 (501)
T PRK11288 474 IAGELAREQA 483 (501)
T ss_pred EEEEEccccC
Confidence 9999987754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=289.99 Aligned_cols=190 Identities=19% Similarity=0.252 Sum_probs=144.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-CCC--------------------ceeeecCCc---ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-SLK--------------------NRCDISQHD---VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-~~~--------------------~~~~v~q~d---~~~ 225 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+. .++
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 35699999999999999999999999999999999999874 210 126788874 467
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-ccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg 304 (521)
+.+||++|+.++..-. ..... .. . ....+..++.+++.+||.. ..++.++
T Consensus 352 ~~~tv~~~~~~~~~~~-~~~~~----~~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 402 (500)
T TIGR02633 352 PILGVGKNITLSVLKS-FCFKM----RI-------------D-----------AAAELQIIGSAIQRLKVKTASPFLPIG 402 (500)
T ss_pred CCCCHHHHhcchhhhh-hccCC----cC-------------C-----------HHHHHHHHHHHHHhcCccCCCccCccc
Confidence 8899999988753100 00000 00 0 0011224567899999964 4676665
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.++++.+ .+++||+++|+..++.++||++++|+
T Consensus 403 -----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 403 -----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred -----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999998887777666555432 35567778899999999999999999
Q ss_pred CCEEEEecCHh
Q 044321 383 NGHIVYQGPRE 393 (521)
Q Consensus 383 ~G~iv~~G~~~ 393 (521)
+|+++..++.+
T Consensus 478 ~G~i~~~~~~~ 488 (500)
T TIGR02633 478 EGKLKGDFVNH 488 (500)
T ss_pred CCEEEEEEccc
Confidence 99999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=253.20 Aligned_cols=161 Identities=22% Similarity=0.245 Sum_probs=121.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGE 227 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~ 227 (521)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.. .++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 35699999999999999999999999999999999999876421 1267888752 3445
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||.||+.|.....+... .+....++++++.+||.+..++.+.
T Consensus 84 ~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 126 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSE----------------------------------AEVERRVREALTAVGASGLRERPTH--- 126 (190)
T ss_pred ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCchhhhhCChh---
Confidence 799999987543211100 0011235678889999877776664
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChh
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAP 369 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~ 369 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..
T Consensus 127 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 127 --CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 59999999999999999999999999999998888777776666543 2455555666543
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=287.78 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=148.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCc-cccCCCCHHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHD-VHIGEMTVRETLAFSAR 239 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d-~~~~~lTV~E~l~f~~~ 239 (521)
+++.+|+||||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+. .+++.+||.|++.+...
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 345799999999999999999999999999999999999887632 237899975 46788999999987532
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQR 318 (521)
..+... .......+++.+||.. ..++.++ .||||||||
T Consensus 413 ~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~qr 451 (552)
T TIGR03719 413 IIQLGK------------------------------------REVPSRAYVGRFNFKGSDQQKKVG-----QLSGGERNR 451 (552)
T ss_pred ccccCc------------------------------------chHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHH
Confidence 111000 0001235788899964 4566655 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC-CEEE-EecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN-GHIV-YQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~-G~iv-~~G~~~~v 395 (521)
|+||++|+.+|++|||||||+++|....+.+.+++.+.++| ||+++|+...+..+||+|++|++ |+++ +.|+.++.
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGC-AVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 99999999999999999999999999999999998877665 66678888899999999999986 6876 56776543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=248.78 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=150.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-CCce---------------------eeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-LKNR---------------------CDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-~~~~---------------------~~v~q~d~~~~~l 228 (521)
+.||++||++|++||+.+|+||||||||||.++|+|.-... ..+. ...+|.+.-++..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 47999999999999999999999999999999999964211 0111 2335666677777
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~ 307 (521)
|+.+.|..+.....-.. .. . .+....+++.++.++++. .+++.|+.
T Consensus 97 ~~~~fLr~a~n~~~~~~-------------------~~-~-----------~~~~~~~~e~~~~l~~~~~~l~R~vN~-- 143 (251)
T COG0396 97 TNSDFLRAAMNARRGAR-------------------GI-L-----------PEFIKELKEKAELLGLDEEFLERYVNE-- 143 (251)
T ss_pred eHHHHHHHHHHhhhccc-------------------cc-c-----------HHHHHHHHHHHHHcCCCHHHhhcccCC--
Confidence 77776655433211000 00 0 112334567889999987 67888875
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhc--CeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLF--DDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~--D~VivL~~ 383 (521)
|+|||||||..|+.+++.+|++.|||||.|++|....+.+.+-+..+ .+..++++||. ..+.++. |+|.+|.+
T Consensus 144 --GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy-~rll~~i~pD~vhvl~~ 220 (251)
T COG0396 144 --GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY-QRLLDYIKPDKVHVLYD 220 (251)
T ss_pred --CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH-HHHHhhcCCCEEEEEEC
Confidence 89999999999999999999999999999999998888777766554 24444445555 4566666 99999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCC
Q 044321 384 GHIVYQGPREYVLEFFKFMGFEC 406 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~ 406 (521)
|+||..|.+ ++.++++..||.|
T Consensus 221 GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 221 GRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CEEEecCCH-HHHHHHHHhchHH
Confidence 999999999 8889999999865
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=252.10 Aligned_cols=164 Identities=23% Similarity=0.228 Sum_probs=124.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|.++|..+ ..+|++|+..+++.+|+.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence 4699999999999999999999999999999999999876531 1267888777777889999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+....... + ...+.++++.+||.+..++.++ .||
T Consensus 93 ~l~~~~~~~~~-------------------------------------~-~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (198)
T TIGR01189 93 NLHFWAAIHGG-------------------------------------A-QRTIEDALAAVGLTGFEDLPAA-----QLS 129 (198)
T ss_pred HHHHHHHHcCC-------------------------------------c-HHHHHHHHHHcCCHHHhcCChh-----hcC
Confidence 98775321100 0 1134567888999877776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
|||||||+||+||+.+|++|+|||||+++|....+.+.+++.+. +.|+|+++|++ .. -.|++++.
T Consensus 130 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~--~~~~~~~~ 197 (198)
T TIGR01189 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD-LG--LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc-cc--ccceEEee
Confidence 99999999999999999999999999998887777776666543 45555554443 22 24566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=253.60 Aligned_cols=177 Identities=24% Similarity=0.295 Sum_probs=125.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..++ ..|++||+.+..... .
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~---~ 94 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFD---E 94 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcC---H
Confidence 599999999999999999999999999999999999887643 147889987665 679999998742210 0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
.......+.. .....+..+ +...++.+. ..+..||||||||++|||||
T Consensus 95 -----~~~~~~~~~~------------------------~l~~~~~~~--~~~~~~~~~-~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 95 -----ERYEKVIKAC------------------------ALEPDLEIL--PDGDLTEIG-EKGINLSGGQKQRISLARAV 142 (204)
T ss_pred -----HHHHHHHHHc------------------------CcHHHHHhc--cCcccceec-CCCCcCCHHHHHHHHHHHHH
Confidence 0000000000 001112211 112223332 23567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHH-HHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQ-FIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~-l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
+.+|+++||||||+++|....+.+.+ ++... +++++|+++|+...+.. ||++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 99999999999999999988776655 33322 34566666777767766 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=288.05 Aligned_cols=191 Identities=21% Similarity=0.300 Sum_probs=147.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc---cccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD---VHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d---~~~~~l 228 (521)
.+|+|+||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. ..++.+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 479999999999999999999999999999999999876421 137888874 467889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
||.||+.+..... ...... .. . ..+....++.+++.+||. +..++.++
T Consensus 346 tv~e~l~~~~~~~-~~~~~~---~~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 394 (501)
T PRK10762 346 SVKENMSLTALRY-FSRAGG---SL-------------K-----------HADEQQAVSDFIRLFNIKTPSMEQAIG--- 394 (501)
T ss_pred cHHHHhhhhhhhh-hccccc---cc-------------C-----------HHHHHHHHHHHHHhcCCCCCCccCchh---
Confidence 9999998753100 000000 00 0 000112456789999995 56776665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||+|++|++|+
T Consensus 395 --~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 395 --LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred --hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 49999999999999999999999999999998887776666665543 35567777889999999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 473 i~~~~~~~~~ 482 (501)
T PRK10762 473 ISGEFTREQA 482 (501)
T ss_pred EEEEeccccC
Confidence 9999987765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=246.75 Aligned_cols=161 Identities=27% Similarity=0.392 Sum_probs=112.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHH-HHHHHHhccCchhhHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRET-LAFSARCQGVGSRYEML 250 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~-l~f~~~~~~~~~~~~~~ 250 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+...+...+ +... ..+...+..+++.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~-------~~~~~~~~~~~i~~~~q~---- 83 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVP-------VSDLEKALSSLISVLNQR---- 83 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEE-------HHHHHHHHHhhEEEEccC----
Confidence 5999999999999999999999999999999999998775 2333333321 1110 0011111111110
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
+.. + . ..+.+.+ +..||||||||++|||||+.+|+
T Consensus 84 ---------------~~~--~-~-------------~tv~~~i--------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 84 ---------------PYL--F-D-------------TTLRNNL--------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ---------------Cee--e-c-------------ccHHHhh--------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 000 0 0 0000100 34699999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
+|||||||+++|....+.+.+++.+. .++++++++|+.+++. .||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 99999999999888777777766543 3455666677777764 79999999999998765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=249.59 Aligned_cols=166 Identities=30% Similarity=0.444 Sum_probs=125.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|. .+..++...+. ......+ +...+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~--~~~~~~~---~~~~i~--------- 76 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDL--ASLSPKE---LARKIA--------- 76 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEC--CcCCHHH---HHHHHh---------
Confidence 46999999999999999999999999999999999998775 33444443322 1112111 000000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
.+..+++.+||.+..++.+ ..||||||||++|||||+.+|+
T Consensus 77 ----------------------------------~~~q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~ 117 (180)
T cd03214 77 ----------------------------------YVPQALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPP 117 (180)
T ss_pred ----------------------------------HHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCC
Confidence 0011667788876666544 4599999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--C-CeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--E-GTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~-~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
++||||||+++|....+.+.+++.+. + +.++++++|+..++.++||++++|++|++++.|
T Consensus 118 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 118 ILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999887777776666543 2 456666778888888999999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=256.97 Aligned_cols=181 Identities=25% Similarity=0.306 Sum_probs=138.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCcccc--CCCCHHHHHHHHHHhc-
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHI--GEMTVRETLAFSARCQ- 241 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~--~~lTV~E~l~f~~~~~- 241 (521)
|+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|++..+ +.+|+.+|+.++....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999876531 247888876543 3479999987753210
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTT 321 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaI 321 (521)
+... ... ......+..+++.+||.+..++.++ .|||||||||+|
T Consensus 81 ~~~~-------------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~l 124 (223)
T TIGR03771 81 GWLR-------------------RPC------------VADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLV 124 (223)
T ss_pred cccc-------------------CCc------------HHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHH
Confidence 0000 000 0011235668899999877776655 599999999999
Q ss_pred HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 322 GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 322 AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.+++.++||++++| +|++++.|+.+++.
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999999999999999998887777777766543 3556666778888899999999999 89999999988763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=249.63 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=156.0
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeec--------CCccccCCCCHHHHHHHHH
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS--------QHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~--------q~d~~~~~lTV~E~l~f~~ 238 (521)
+.....+|+||||++.+||.++|+|+||||||||||+|+|.++|+.+ ...+. -.--+-|++|.+||+.|..
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHH
Confidence 45667899999999999999999999999999999999999999742 21111 1223567899999999987
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.+.|... ++++...+++.+.-+|.+..|.+| +++|.||+-|
T Consensus 115 ~~~G~~~----------------------------------~ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aR 155 (249)
T COG1134 115 LILGLTR----------------------------------KEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYAR 155 (249)
T ss_pred HHhCccH----------------------------------HHHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHH
Confidence 6655421 223456777888888888888766 4699999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
++.|.|...+|+|||+||..+..|..+.+.-.+.+.++ +..+|++++|+...+.++||++++|++|++.+.|.++++.
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 99999999999999999999966655443322222222 4577777889999999999999999999999999999999
Q ss_pred HHHHHc
Q 044321 397 EFFKFM 402 (521)
Q Consensus 397 ~~f~~~ 402 (521)
++|+..
T Consensus 236 ~~Y~~~ 241 (249)
T COG1134 236 PAYEED 241 (249)
T ss_pred HHHHHh
Confidence 888653
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=247.78 Aligned_cols=163 Identities=28% Similarity=0.420 Sum_probs=111.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ .+..++.+.+.. ..+- ....+......+.+...
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~--~~~~-~~~~~~~~i~~~~q~~~-- 86 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLT--DLED-ELPPLRRRIGMVFQDFA-- 86 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcc--ccch-hHHHHhhcEEEEecCCc--
Confidence 46999999999999999999999999999999999998775 344444443221 1110 00001111111111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
+.+... +.+.+.+ .||||||||++||+||+.+|+
T Consensus 87 -----------~~~~~t---------------------~~~~l~~--------------~lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 87 -----------LFPHLT---------------------VLENIAL--------------GLSGGQQQRVALARALAMDPD 120 (178)
T ss_pred -----------cCCCCC---------------------HHHheee--------------cCCHHHHHHHHHHHHHHCCCC
Confidence 000000 1111111 199999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--C-CeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--E-GTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~-~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
++||||||+++|......+.+++.+. . ++++++++|+.+++.++||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999998888777777666543 2 4667777888888888999999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=312.11 Aligned_cols=244 Identities=18% Similarity=0.149 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHh-h--------hhhcCC--CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKN-R--------IARVGI--SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCA 151 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~--------~~~~g~--~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~ 151 (521)
.+....+++|+.++++.++|.....-.. . .+.... ..| ...|+|+||++.|..
T Consensus 1165 le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~--------------- 1229 (1490)
T TIGR01271 1165 VDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE--------------- 1229 (1490)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC---------------
Confidence 3556788899999887655421000000 0 000000 113 247999999999731
Q ss_pred hHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------
Q 044321 152 NIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------ 213 (521)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------ 213 (521)
+...+|+||||+|+|||.+||+|+||||||||+++|.|++++...
T Consensus 1230 -----------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1230 -----------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred -----------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHh
Confidence 123699999999999999999999999999999999999863211
Q ss_pred ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc
Q 044321 214 NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293 (521)
Q Consensus 214 ~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 293 (521)
..+||+|++.+|. .|+++||...... +.+....+....+ ..+ .+ -
T Consensus 1293 ~is~IpQdp~LF~-GTIR~NLdp~~~~--------------------------tdeei~~aL~~~~-----L~~-~i--~ 1337 (1490)
T TIGR01271 1293 AFGVIPQKVFIFS-GTFRKNLDPYEQW--------------------------SDEEIWKVAEEVG-----LKS-VI--E 1337 (1490)
T ss_pred ceEEEeCCCccCc-cCHHHHhCcccCC--------------------------CHHHHHHHHHHCC-----CHH-HH--H
Confidence 1278999887765 6999999643110 0111111111100 001 11 1
Q ss_pred CCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHH
Q 044321 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETY 372 (521)
Q Consensus 294 gL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~ 372 (521)
.+++..||.||+ .+..||||||||++|||||+++|+||||||||+++|.+.-..+.+.+... ...++|+++|... +.
T Consensus 1338 ~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~-ti 1415 (1490)
T TIGR01271 1338 QFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE-AL 1415 (1490)
T ss_pred hCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH
Confidence 355678999986 55679999999999999999999999999999988777766666655443 3455555666654 55
Q ss_pred hhcCeEEEEeCCEEEEecCHhHHH
Q 044321 373 DLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 373 ~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..||+|++|++|+|++.|++++++
T Consensus 1416 ~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1416 LECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 569999999999999999999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=257.63 Aligned_cols=208 Identities=22% Similarity=0.296 Sum_probs=149.6
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---ceeeecCCccccCCCCHHH--HHHHHHHhcc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---NRCDISQHDVHIGEMTVRE--TLAFSARCQG 242 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---~~~~v~q~d~~~~~lTV~E--~l~f~~~~~~ 242 (521)
+....+++||||+|++|++++++|||||||||+||+|+|++.|+.+ +.+++|+.+. -.+.. ++.|+-+.+
T Consensus 34 ~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~----~~~~~~~~~v~gqk~q- 108 (325)
T COG4586 34 ERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR----EEYLRSIGLVMGQKLQ- 108 (325)
T ss_pred hhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH----HHHHHHHHHHhhhhhe-
Confidence 3456699999999999999999999999999999999999998742 2233333211 00000 111111111
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
+.-.+... .+............++..++.+++.++++|+...+.+| |.||-|||.|+.||
T Consensus 109 ------l~Wdlp~~---------ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLa 168 (325)
T COG4586 109 ------LWWDLPAL---------DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELA 168 (325)
T ss_pred ------eeeechhh---------hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHH
Confidence 00000000 01111111223334455667888999999998877665 56999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f 399 (521)
.+|+++|++|||||||-++|......+++++++. .+++|+.++|....+..+||+|++|+.|+++|.|+.+++.+-|
T Consensus 169 aaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 169 AALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999988877766666666543 3677777889999999999999999999999999999988765
Q ss_pred H
Q 044321 400 K 400 (521)
Q Consensus 400 ~ 400 (521)
.
T Consensus 249 ~ 249 (325)
T COG4586 249 G 249 (325)
T ss_pred C
Confidence 3
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=290.02 Aligned_cols=184 Identities=23% Similarity=0.278 Sum_probs=145.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCcc--ccCCCCHHHHHHHH
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDV--HIGEMTVRETLAFS 237 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~--~~~~lTV~E~l~f~ 237 (521)
++.+.+|+||||+|.+|++++|+|||||||||||++|+|.++|+.+ ..+|++|+.. +.+..|+.+++...
T Consensus 322 y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~ 401 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARL 401 (638)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHh
Confidence 3456799999999999999999999999999999999999887532 1267777531 23344555443210
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQR 316 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqr 316 (521)
. + ......+..+|+.+++.. ..++.++ .||||||
T Consensus 402 ---~----------------------~---------------~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGek 436 (638)
T PRK10636 402 ---A----------------------P---------------QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEK 436 (638)
T ss_pred ---C----------------------c---------------hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHH
Confidence 0 0 001123466889999963 5666665 4999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYV 395 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v 395 (521)
|||+||++|+.+|++|||||||+++|......|.+++...++ +||+++|+...+..+||+|++|++|+++ +.|+.++.
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999999999999999999999888776 4566778888999999999999999997 88998887
Q ss_pred HH
Q 044321 396 LE 397 (521)
Q Consensus 396 ~~ 397 (521)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 54
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=242.64 Aligned_cols=142 Identities=25% Similarity=0.343 Sum_probs=117.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+ +.+|+.||+.+.
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~-~~~tv~~nl~~~----- 87 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL-PLGTLREQLIYP----- 87 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-ccccHHHHhhcc-----
Confidence 4699999999999999999999999999999999999887532 24788887654 467888876531
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.+..||||||||++||
T Consensus 88 ----------------------------------------------------------------~~~~LS~G~~~rv~la 103 (166)
T cd03223 88 ----------------------------------------------------------------WDDVLSGGEQQRLAFA 103 (166)
T ss_pred ----------------------------------------------------------------CCCCCCHHHHHHHHHH
Confidence 0135999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
|||+.+|++|+|||||+++|....+.+.+++.+.+.|+|+ ++|+.. ...+||++++|++|
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiii-vsh~~~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVIS-VGHRPS-LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEE-EeCChh-HHhhCCEEEEEcCC
Confidence 9999999999999999999999999998888776555555 556554 45799999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=285.08 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=144.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc---cccCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD---VHIGEMT 229 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d---~~~~~lT 229 (521)
+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+. .+++.+|
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 69999999999999999999999999999999999876421 126777763 3667788
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~ 308 (521)
+.+++.+..... ... .. . ....+..++.+|+.+||. ...++.++
T Consensus 358 ~~~~l~~~~~~~-~~~-----------------~~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 402 (510)
T PRK15439 358 LAWNVCALTHNR-RGF-----------------WI--K-----------PARENAVLERYRRALNIKFNHAEQAAR---- 402 (510)
T ss_pred HHHHHHhhhhhh-hcc-----------------cc--C-----------hHHHHHHHHHHHHHcCCCCCCccCccc----
Confidence 888875421000 000 00 0 000112456789999997 66777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.++ .+.+||+++|+..++.++||++++|++|++
T Consensus 403 -~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 403 -TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481 (510)
T ss_pred -cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777777766543 356677778999999999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|.++++
T Consensus 482 ~~~~~~~~~ 490 (510)
T PRK15439 482 SGALTGAAI 490 (510)
T ss_pred EEEEccccC
Confidence 999977654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=247.29 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=110.5
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeee---------------------cCCc---cccCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDI---------------------SQHD---VHIGEM 228 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v---------------------~q~d---~~~~~l 228 (521)
+|+|+||+|++|++++|+||||||||||+++|+|+++|+. +..++ +|+. .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS-GEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 8999999999999999999999999999999999987752 22333 3321 122233
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|++||+.+.
T Consensus 94 t~~e~l~~~----------------------------------------------------------------------- 102 (182)
T cd03215 94 SVAENIALS----------------------------------------------------------------------- 102 (182)
T ss_pred cHHHHHHHH-----------------------------------------------------------------------
Confidence 333332221
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.++++++|+..++.++||++++|++|++
T Consensus 103 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 019999999999999999999999999999998888777777666543 345666777888889999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=256.71 Aligned_cols=183 Identities=24% Similarity=0.278 Sum_probs=143.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+++||||+|++||+++|+|.||||||||-++|.|+++|+ .+..+....+.. .++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~--~~~~-------------------- 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDIT--KLSK-------------------- 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchh--hcch--------------------
Confidence 57999999999999999999999999999999999999886 344444444321 1110
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
.+..+.+.++|+.+||.. .++ ++++.|||||+||++|||||+.+|
T Consensus 83 -----------------------------~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~IARALal~P 128 (268)
T COG4608 83 -----------------------------EERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGIARALALNP 128 (268)
T ss_pred -----------------------------hHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHHHHHHhhCC
Confidence 011234677899999865 344 455679999999999999999999
Q ss_pred cEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCC
Q 044321 330 QALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFE 405 (521)
Q Consensus 330 ~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~ 405 (521)
+++++|||+|++| .++.+.|.++-.+. +.+.+.++|+...+..++|+|.+|..|+||+.|+.+++ |.
T Consensus 129 ~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~-~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~--------~~ 199 (268)
T COG4608 129 KLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV--------FS 199 (268)
T ss_pred cEEEecCchhhcchhHHHHHHHHHHHHHHHh-CCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH--------hh
Confidence 9999999999655 46666666665544 45555667888899999999999999999999999998 45
Q ss_pred CCCCCCHHHHHHHh
Q 044321 406 CPKRKGVADFLQEV 419 (521)
Q Consensus 406 ~p~~~~~adfl~~v 419 (521)
.|.+..+...+..+
T Consensus 200 ~p~HpYTk~Ll~a~ 213 (268)
T COG4608 200 NPLHPYTKALLSAV 213 (268)
T ss_pred CCCCHHHHHHHHhC
Confidence 77777666665544
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=310.04 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
..+...+++|+.++++.+.... .. + .........|+|+|++|.+..
T Consensus 581 ~~~a~~s~~RI~~~L~~~e~~~-----~~-~-~~~~~~~~~I~~~nvsf~y~~--------------------------- 626 (1622)
T PLN03130 581 AVNANVSLKRLEELLLAEERVL-----LP-N-PPLEPGLPAISIKNGYFSWDS--------------------------- 626 (1622)
T ss_pred HHHHHHHHHHHHHHHcCccccc-----cc-C-CcccCCCCceEEEeeEEEccC---------------------------
Confidence 5677888899988886543210 00 0 000111235899999998631
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-C------ceeeecCCccccCCCCHHHHHHH
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-K------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-~------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
.....+|+|||++|++|++++|+||+|||||||+++|.|.+++.. + ..+||+|++.++ +.|++|||.|
T Consensus 627 ----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf-ngTIreNI~f 701 (1622)
T PLN03130 627 ----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF-NATVRDNILF 701 (1622)
T ss_pred ----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC-CCCHHHHHhC
Confidence 012358999999999999999999999999999999999998865 2 238999987655 5899999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+.... . . ......+++.. .+. .-.|++..+|.||+. +..||||||
T Consensus 702 g~~~d----~----e---------------~y~~vl~a~~L--------~~d---i~~LP~Gd~T~IGe~-G~~LSGGQK 746 (1622)
T PLN03130 702 GSPFD----P----E---------------RYERAIDVTAL--------QHD---LDLLPGGDLTEIGER-GVNISGGQK 746 (1622)
T ss_pred CCccc----H----H---------------HHHHHHHHhCc--------HHH---HHhCCCcccccccCC-CCCCCHHHH
Confidence 73210 0 0 00111111111 111 224778889999985 557999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-HHHHHH--cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-RQFIHI--LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
|||+|||||..+|+||||||||+++|....+.+ .+.+.. .++|+|+++ |.. .....||+|++|++|++++.|+++
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVT-H~l-~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT-NQL-HFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEE-CCH-hHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999988766544 333322 245666555 444 467789999999999999999999
Q ss_pred HHH
Q 044321 394 YVL 396 (521)
Q Consensus 394 ~v~ 396 (521)
++.
T Consensus 825 eL~ 827 (1622)
T PLN03130 825 ELS 827 (1622)
T ss_pred HHH
Confidence 885
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=247.82 Aligned_cols=164 Identities=20% Similarity=0.197 Sum_probs=124.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||.+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH
Confidence 4699999999999999999999999999999999999876531 1267777666667889999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+..... . ....++++++.+++.+..++.++ .||
T Consensus 94 ~~~~~~~~~---~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (200)
T PRK13540 94 NCLYDIHFS---P------------------------------------GAVGITELCRLFSLEHLIDYPCG-----LLS 129 (200)
T ss_pred HHHHHHhcC---c------------------------------------chHHHHHHHHHcCCchhhhCChh-----hcC
Confidence 987753110 0 00134567888999876666554 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
|||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+... .+.+|...
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~d~~~ 197 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-LNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-ccccchhh
Confidence 99999999999999999999999999999888777777766542 34455556666443 35577543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=264.81 Aligned_cols=235 Identities=25% Similarity=0.304 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCC-CCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccc
Q 044321 86 ERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGIS-LPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNIL 164 (521)
Q Consensus 86 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 164 (521)
+...-+|++++..+...+ ..++.+...+. .....|.|.|++|.+.
T Consensus 228 q~ltdme~mfdLl~~~~~-----v~d~pda~~L~~~~~g~v~F~~V~F~y~----------------------------- 273 (497)
T COG5265 228 QALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYD----------------------------- 273 (497)
T ss_pred HhhhhHHHHHHhhccchh-----hccCCCCccccccccceEEEEEEEeecc-----------------------------
Confidence 334445666665555444 22332222221 1134689999999863
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-------------------eeeecCCcccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-------------------RCDISQHDVHI 225 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-------------------~~~v~q~d~~~ 225 (521)
..+++|+++||.+++|+.++|+||+|+||||++++|-.+++++.+. .+.|+|+.++
T Consensus 274 ----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL- 348 (497)
T COG5265 274 ----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL- 348 (497)
T ss_pred ----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee-
Confidence 3457999999999999999999999999999999999999886431 1677886554
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
++-|...|+.|+. |+...+....++.. -++.+.+. .|++.++|.||+
T Consensus 349 FNDti~yni~ygr-------------------------~~at~eev~aaa~~-----aqi~~fi~---~lP~gy~t~Vge 395 (497)
T COG5265 349 FNDTIAYNIKYGR-------------------------PDATAEEVGAAAEA-----AQIHDFIQ---SLPEGYDTGVGE 395 (497)
T ss_pred hhhhHHHHHhccC-------------------------ccccHHHHHHHHHH-----hhhhHHHH---hCchhhhcccch
Confidence 4678888888863 22222222222211 11223322 389999999998
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++.+ |||||||||+|||+++.+|+||+|||.||++|-. +...|+... .+.|++++.|.- .+.--+|.|+||
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrl--sti~~adeiivl 470 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRL--STIIDADEIIVL 470 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehh--hhccCCceEEEe
Confidence 6553 9999999999999999999999999999976554 444454443 367888876543 345569999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|++++++.
T Consensus 471 ~~g~i~erg~h~~ll~ 486 (497)
T COG5265 471 DNGRIVERGTHEELLA 486 (497)
T ss_pred eCCEEEecCcHHHHHH
Confidence 9999999999999874
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=282.73 Aligned_cols=210 Identities=21% Similarity=0.257 Sum_probs=147.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCccccCCCCHHHHHHHHHHh
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHDVHIGEMTVRETLAFSARC 240 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d~~~~~lTV~E~l~f~~~~ 240 (521)
+.+.+|+||||+|.+|++++|+|||||||||||++|+|.+.|+.+. .+|++|....+ ..|+.+.+.-...
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~-~~~~~~~v~~~~~- 89 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPAL-PQPALEYVIDGDR- 89 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC-CCCHHHHHHHhhH-
Confidence 3457999999999999999999999999999999999988776321 14566643322 3465554432110
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHH----hhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA----ATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGq 315 (521)
.+..++......... .....+.... ...+.+....+..+|+.+||. +..+..++ .|||||
T Consensus 90 --------~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGe 154 (638)
T PRK10636 90 --------EYRQLEAQLHDANER--NDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS-----DFSGGW 154 (638)
T ss_pred --------HHHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh-----hcCHHH
Confidence 011111100000000 0000000000 011223345678899999997 46676665 499999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREY 394 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~ 394 (521)
||||+||++|+.+|++|||||||+++|...+..|.+++...++ +||+++|+...+..+||+|++|++|+++ |.|+.+.
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~-tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG-TLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999999999999999887665 4555678888999999999999999996 6788765
Q ss_pred HH
Q 044321 395 VL 396 (521)
Q Consensus 395 v~ 396 (521)
..
T Consensus 234 ~~ 235 (638)
T PRK10636 234 FE 235 (638)
T ss_pred HH
Confidence 54
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=287.36 Aligned_cols=186 Identities=24% Similarity=0.288 Sum_probs=149.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCc-cccCCCCHHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHD-VHIGEMTVRETLAFSAR 239 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d-~~~~~lTV~E~l~f~~~ 239 (521)
+.+++|+||||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. .+++.+||.|++.+...
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcc
Confidence 446799999999999999999999999999999999999877532 137888864 47788999999977421
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQR 318 (521)
..... . ....+..+|+.+++. +..++.++ .||||||||
T Consensus 410 ~~~~~----------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqR 448 (635)
T PRK11147 410 EVMVN----------------------G--------------RPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNR 448 (635)
T ss_pred ccccc----------------------c--------------hHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHH
Confidence 00000 0 001235578888985 45666665 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe-CCEEE-EecCHhHHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS-NGHIV-YQGPREYVL 396 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~-~G~iv-~~G~~~~v~ 396 (521)
|+||++|+.+|++|||||||+++|....+.|.+++...++| ||+++|+...+..+||+|++|+ +|+++ |.|+.++..
T Consensus 449 l~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~t-vi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 449 LLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGT-VLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCe-EEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999999998877664 5567788888999999999998 89986 567776653
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=251.77 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=138.6
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCC--CCHHHHHHHHHH-hccCch
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE--MTVRETLAFSAR-CQGVGS 245 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~--lTV~E~l~f~~~-~~~~~~ 245 (521)
++++||+|||++|+|||-.+|+|||||||||||++|+|..+|+ .....+.....--.+ -.++.+|-+... +.....
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 4568999999999999999999999999999999999988886 333333322110000 123333332110 000000
Q ss_pred hhHHHHH--HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 246 RYEMLAE--LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 246 ~~~~~~~--l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
......+ ++..-...++... + ...+....+..+++.+|+.+.+|...+. ||-||||||.|||
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~-~----------~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrvLiaR 184 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQE-D----------LTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIAR 184 (257)
T ss_pred cccccceeeeeccccccccccc-C----------CCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHHHHHH
Confidence 0000000 0000000111110 0 0112234567789999999998887764 9999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH----cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHI----LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~----~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||+.+|.+||||||++++|......+.+.+.+ .+.+.+++++|+.+++-..|+++++|++|+++++|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999988776555444433 246778888888999999999999999999999884
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=242.44 Aligned_cols=157 Identities=25% Similarity=0.381 Sum_probs=108.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+..++...+. ...+..+ +...+..+.+...
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~--~~~~~~~---~~~~i~~~~q~~~-- 86 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADI--SQWDPNE---LGDHVGYLPQDDE-- 86 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEc--ccCCHHH---HHhheEEECCCCc--
Confidence 35999999999999999999999999999999999998775 33344433221 1122111 1111111111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
+.+ ..+.+. . ||||||||++||+||+.+|+
T Consensus 87 -----------~~~----------------------~tv~~~---------------l--LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 87 -----------LFS----------------------GSIAEN---------------I--LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred -----------ccc----------------------CcHHHH---------------C--cCHHHHHHHHHHHHHhcCCC
Confidence 000 000110 0 99999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
+|||||||+++|....+.+.+++... .++++++++|+.+.+ ..||++++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 99999999988887766666655433 345666667777666 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=270.60 Aligned_cols=191 Identities=24% Similarity=0.266 Sum_probs=155.9
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
++.++...+++||||+|++||+.+|+|.||||||||+++|.|.+.|+.+ +.+.|.|+..+
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 3344577899999999999999999999999999999999999999742 23789999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++.+||.||+.++...... . ..+. .+....++++.+.+||+-..|.+|+
T Consensus 91 v~~lTV~ENiiLg~e~~~~-~-------------------~~~~-----------~~~~~~i~~l~~~yGl~vdp~~~V~ 139 (501)
T COG3845 91 VPTLTVAENIILGLEPSKG-G-------------------LIDR-----------RQARARIKELSERYGLPVDPDAKVA 139 (501)
T ss_pred ccccchhhhhhhcCccccc-c-------------------ccCH-----------HHHHHHHHHHHHHhCCCCCccceee
Confidence 9999999999987532100 0 0000 1123456788999999998898888
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ ||-||||||.|-+||..+|++|||||||+-++++-++.|.+.++.+ .+.+||.+||-..|+.++||++.||.
T Consensus 140 d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 140 D-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred c-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 6 9999999999999999999999999999988877666665555443 45666777899999999999999999
Q ss_pred CCEEEEecC
Q 044321 383 NGHIVYQGP 391 (521)
Q Consensus 383 ~G~iv~~G~ 391 (521)
.|+++..-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999976554
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=249.86 Aligned_cols=171 Identities=23% Similarity=0.343 Sum_probs=121.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...+ .
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-N 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-c
Confidence 5699999999999999999999999999999999999865311 136778876655 6
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-------ccc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-------CAD 300 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-------~~d 300 (521)
.|++||+.+.... ... ....+++.++|.+ ..+
T Consensus 93 ~t~~~nl~~~~~~----~~~-------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 131 (218)
T cd03290 93 ATVEENITFGSPF----NKQ-------------------------------------RYKAVTDACSLQPDIDLLPFGDQ 131 (218)
T ss_pred ccHHHHHhhcCcC----CHH-------------------------------------HHHHHHHHhCcHHHHHhCcCccc
Confidence 7999998764211 000 0011222222221 112
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH--HHHHc--CCeEEEEEecChhHHHhhcC
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ--FIHIL--EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~--l~~~~--~~t~ii~i~h~~~~~~~l~D 376 (521)
+..+ ..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+ +.... .+.++|+++|+...+ ..||
T Consensus 132 ~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~-~~~d 209 (218)
T cd03290 132 TEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL-PHAD 209 (218)
T ss_pred cCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-hhCC
Confidence 2222 2355799999999999999999999999999999999887766554 33221 245556666777666 5799
Q ss_pred eEEEEeCCE
Q 044321 377 DIILISNGH 385 (521)
Q Consensus 377 ~VivL~~G~ 385 (521)
++++|++|.
T Consensus 210 ~i~~l~~G~ 218 (218)
T cd03290 210 WIIAMKDGS 218 (218)
T ss_pred EEEEecCCC
Confidence 999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=282.51 Aligned_cols=174 Identities=23% Similarity=0.186 Sum_probs=141.0
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCchh
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSR 246 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~ 246 (521)
.|+++||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+||+|++.+..... .
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~-- 429 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDL--G-- 429 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhc--C--
Confidence 59999999999999999999999999999999999987642 2378999877788999999987642100 0
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc
Q 044321 247 YEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326 (521)
Q Consensus 247 ~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv 326 (521)
......++|+.+||.+..++.++ .|||||||||+||+||+
T Consensus 430 -----------------------------------~~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 430 -----------------------------------SSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLS 469 (590)
T ss_pred -----------------------------------hHHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHh
Confidence 00123568899999877777665 49999999999999999
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
.+|++|||||||+++|......+.++++++ .+.++++++|+...+..+||+|++|+ |++...|.
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999998887666666655443 35566667888889999999999996 58877775
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=279.97 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=145.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.|+.+. .+|++|........+|.+++..+....
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~- 94 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQ- 94 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHH-
Confidence 46999999999999999999999999999999999998876321 134455433223357777654321100
Q ss_pred CchhhHHHHHHHHHHHhcCCCCC-CChHHHHHHH----hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPD-PDIDVFMKAA----ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~-~~~~~~~~~~----~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
.........+... ....+. ..+..+.... ...+.+....+..+++.+||.. ++.+ ..|||||||
T Consensus 95 -~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekq 163 (635)
T PRK11147 95 -AEYLKRYHDISHL---VETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAAL-----SSLSGGWLR 163 (635)
T ss_pred -HHHHHHHHHHHHH---hccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCch-----hhcCHHHHH
Confidence 0000000000000 000000 0000000000 0111223456788999999963 4444 469999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHH
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVL 396 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~ 396 (521)
||+||++|+.+|++|||||||+++|......|.+++...++ +||+++|+...+..+||+|++|++|+++ |.|+.++.+
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~-tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG-SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999887765 5566778888999999999999999997 568877654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=282.65 Aligned_cols=186 Identities=23% Similarity=0.292 Sum_probs=150.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 4699999999999999999999999999999999999877421 23789998888888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|+.||+.+.....+... .+....+.++++.+||.+..|+.++
T Consensus 101 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgl~~~~~~~~~--- 143 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLER----------------------------------KQRLLRAQELLQRLGLEDRVEYQPS--- 143 (648)
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhcCCcc---
Confidence 999999987543222100 0112245678889999887777665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||+||++|||||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.+.+ +.||++++|++|+
T Consensus 144 --~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~-~~~d~i~~l~~G~ 220 (648)
T PRK10535 144 --QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGE 220 (648)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HhCCEEEEEECCE
Confidence 59999999999999999999999999999999988888877776543 345566666776655 5799999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+.++..
T Consensus 221 i~~~g~~~~~~ 231 (648)
T PRK10535 221 IVRNPPAQEKV 231 (648)
T ss_pred EEeecCccccc
Confidence 99999998774
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=274.17 Aligned_cols=213 Identities=25% Similarity=0.305 Sum_probs=163.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHh
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARC 240 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~ 240 (521)
+.+.+|+|+|++|.+|+.+||||+||||||||||+|+|.+.|+.+ ..+|+.|+....+..||.+.+.-+...
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 566899999999999999999999999999999999999977642 248999999888889999988765321
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChH---HH-HHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDID---VF-MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
. .++..++..... ..++++.. .+ .......+.+.+..+..+|..+|+... ++.+++ ||||||
T Consensus 94 ~-----~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~-----LSGG~r 159 (530)
T COG0488 94 L-----RELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS-----LSGGWR 159 (530)
T ss_pred H-----HHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh-----cCHHHH
Confidence 1 111111111110 01111110 00 011122335566778889999999877 776664 999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHhHH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPREYV 395 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~~v 395 (521)
.||+||+||+.+|++|||||||+.+|.+.+.+|.+++....+ ++|+++|+....-+.|++|+-|+.|++ .|.|..+..
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 999999999999999999999999999999999999987777 666678999999999999999999988 566877655
Q ss_pred H
Q 044321 396 L 396 (521)
Q Consensus 396 ~ 396 (521)
.
T Consensus 239 ~ 239 (530)
T COG0488 239 L 239 (530)
T ss_pred H
Confidence 4
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=277.59 Aligned_cols=235 Identities=16% Similarity=0.157 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+..+.+.+|+.++.+.+.+... . .....+ ...++|+|+++.++
T Consensus 289 ~~~~~~a~~ri~~l~~~~~~~~~-------~-~~~~~~~~~~i~~~~v~f~y~--------------------------- 333 (547)
T PRK10522 289 LLSAQVAFNKLNKLALAPYKAEF-------P-RPQAFPDWQTLELRNVTFAYQ--------------------------- 333 (547)
T ss_pred HHHHHHHHHHHHHHhcccccccc-------c-cccccCcCceEEEEEEEEEeC---------------------------
Confidence 45667777887777643322100 0 001112 13689999999862
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
+...+|+|+||+|++|+.++|+||||||||||+++|+|+++|+. +...+.+.+. ...+..+ +...+..
T Consensus 334 ------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~~--~~~~~~~---~~~~i~~ 401 (547)
T PRK10522 334 ------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS-GEILLDGKPV--TAEQPED---YRKLFSA 401 (547)
T ss_pred ------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCEEC--CCCCHHH---HhhheEE
Confidence 11259999999999999999999999999999999999998763 2222322221 1111110 0001111
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc--cCCCCChHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE--ILRGISGGQRKRVT 320 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~--~~r~LSGGqrQRva 320 (521)
+.+...++.. +..+. .++ .....+.++++.+++....+. ++. ....||||||||++
T Consensus 402 v~q~~~lf~~-ti~~n----~~~---------------~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPE----GKP---------------ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLA 459 (547)
T ss_pred EecChhHHHH-hhccc----cCc---------------hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHH
Confidence 1111111110 00000 000 001123456677777654332 221 13579999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH----HcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH----ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~----~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||+.+|++|+|||||+++|.+..+.+.+.+. ..+.|+|+++| .. +....||+|++|++|++++.
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH-~~-~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH-DD-HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe-ch-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999988877766654432 12456666554 43 56778999999999999876
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=281.88 Aligned_cols=185 Identities=20% Similarity=0.241 Sum_probs=142.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHhc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARCQ 241 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~~ 241 (521)
...+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. +..+++.++..+.....
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~--~~~l~~~~~~~~~~~~~ 598 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH--VDGLDLSSNPLLYMMRC 598 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc--cccCCcchhHHHHHHHh
Confidence 34699999999999999999999999999999999999887632 136788863 34455555533211000
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRva 320 (521)
.+.. ....+..+|+.+||.. ..+..+ ..|||||||||+
T Consensus 599 ---------------------~~~~---------------~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRva 637 (718)
T PLN03073 599 ---------------------FPGV---------------PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVA 637 (718)
T ss_pred ---------------------cCCC---------------CHHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHH
Confidence 0000 0113456889999973 455554 459999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHHHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVLEF 398 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~~~ 398 (521)
||++|+.+|++|||||||+++|......+.+.+...++ +||+++|+...+..+||++++|++|+++ +.|+.++..++
T Consensus 638 LAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 638 FAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999988888877765555 5666778888999999999999999998 78888766543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=241.76 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=121.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
.+++ +||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|....++.+||.||+.+
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 4555 9999999999999999999999999999999877532 12577777666778999999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
...... ....+..+++.+|+.+..++.++ .||||||
T Consensus 94 ~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 129 (195)
T PRK13541 94 WSEIYN---------------------------------------SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQ 129 (195)
T ss_pred HHHhcc---------------------------------------cHHHHHHHHHHcCCHhhhccChh-----hCCHHHH
Confidence 532110 00124557788898876666554 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--cCCeEEEEEecChhHHHhhcCeE
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--LEGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~~~t~ii~i~h~~~~~~~l~D~V 378 (521)
||++||+||+.+|++|||||||+++|....+.+.+++.. ..+.++++++|+...+. .+|.|
T Consensus 130 ~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~-~~~~~ 192 (195)
T PRK13541 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK-SAQIL 192 (195)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc-hhhee
Confidence 999999999999999999999999988887777776642 23455555667665444 35554
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=283.16 Aligned_cols=175 Identities=13% Similarity=0.207 Sum_probs=132.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|++++..+ ..+|++|++.+++. |++||+.++.....
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~ 543 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSED 543 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhh
Confidence 3699999999999999999999999999999999999876532 24789998876665 99999987532110
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc------cccccCccCCCCChHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA------DTMVGDEILRGISGGQR 316 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~------dt~vg~~~~r~LSGGqr 316 (521)
.. .++.. ...+..+++.+||.+.. ||..+ ....||||||
T Consensus 544 ~~------------------~~~~~---------------~~~i~~~l~~~~l~~~~~~~~g~~~~~~--~~~~LSgGqk 588 (659)
T TIGR00954 544 MK------------------RRGLS---------------DKDLEQILDNVQLTHILEREGGWSAVQD--WMDVLSGGEK 588 (659)
T ss_pred hh------------------ccCCC---------------HHHHHHHHHHcCCHHHHhhcCCcccccc--cccCCCHHHH
Confidence 00 00000 11234466667776543 33332 3457999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||++|||||+.+|++|||||||+++|.+..+.+.+.+++.+.|+|+ ++|+... .+.||++++|+.
T Consensus 589 QRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~-isH~~~~-~~~~d~il~l~~ 653 (659)
T TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS-VSHRKSL-WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE-EeCchHH-HHhCCEEEEEeC
Confidence 9999999999999999999999999999999999888776555555 5565544 578999999973
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=237.89 Aligned_cols=155 Identities=27% Similarity=0.424 Sum_probs=108.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|. .+..++.+.+. ...... .+......+++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~--~~~~~~---~~~~~i~~~~~~----- 84 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDL--RDLDLE---SLRKNIAYVPQD----- 84 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEh--hhcCHH---HHHhhEEEEcCC-----
Confidence 5999999999999999999999999999999999998775 33344433221 111111 011111111110
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
+.. + . ..+.+. + |||||||||+||+||+.+|++
T Consensus 85 --------------~~~--~-~-------------~t~~e~---------------l--LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 85 --------------PFL--F-S-------------GTIREN---------------I--LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred --------------chh--c-c-------------chHHHH---------------h--hCHHHHHHHHHHHHHhcCCCE
Confidence 000 0 0 000000 0 999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||+++|......+.+++.+. .++++++++|+.+.+.. ||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999988877777776544 24566667788878766 99999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=276.99 Aligned_cols=189 Identities=22% Similarity=0.241 Sum_probs=131.9
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee---------------------eecCCcccc
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC---------------------DISQHDVHI 225 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~---------------------~v~q~d~~~ 225 (521)
.++.+.+|+||||+|++|++++|+|||||||||||++|+|+.++...+.. |++|+...+
T Consensus 269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 33445799999999999999999999999999999999997654222333 333332211
Q ss_pred C--CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-ccccc
Q 044321 226 G--EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTM 302 (521)
Q Consensus 226 ~--~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~ 302 (521)
. ..++.+++.+..... ...... ...+....++.+++.+||.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~------------------~~~~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 398 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDS------------------IGIYQA------------VSDRQQKLAQQWLDILGIDKRTADAP 398 (490)
T ss_pred cccCCcHHHHHHhccccc------------------cccccC------------CCHHHHHHHHHHHHHcCCchhhccCc
Confidence 1 123333222110000 000000 00011234677899999987 67766
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHh-hcCeE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYD-LFDDI 378 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~-l~D~V 378 (521)
++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++||+++|+..++.+ +||++
T Consensus 399 ~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 399 FH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE
Confidence 65 49999999999999999999999999999998887777766665443 44567777888888877 59999
Q ss_pred EEEeCCEEEEec
Q 044321 379 ILISNGHIVYQG 390 (521)
Q Consensus 379 ivL~~G~iv~~G 390 (521)
++|++|++++.-
T Consensus 474 ~~l~~G~i~~~~ 485 (490)
T PRK10938 474 EFVPDGDIYRYV 485 (490)
T ss_pred EEecCCceEEee
Confidence 999999998654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=235.18 Aligned_cols=148 Identities=24% Similarity=0.345 Sum_probs=112.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
.++|+|+||+|++||+++|+|||||||||||++|+|+++|. .+..++...+. ...+..+.
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~--~~~~~~~~----------------- 72 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEV--SFASPRDA----------------- 72 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEC--CcCCHHHH-----------------
Confidence 36999999999999999999999999999999999998775 33334433221 11111100
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
.-..++ +...||||||||++||+||+.+|+
T Consensus 73 --------------------------------------~~~~i~------------~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 73 --------------------------------------RRAGIA------------MVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred --------------------------------------HhcCeE------------EEEecCHHHHHHHHHHHHHhcCCC
Confidence 000001 111299999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
+|||||||+++|....+.+.+++++. .++++++++|+.+++.++||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999998888777776666543 35566667888888889999999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=255.29 Aligned_cols=205 Identities=23% Similarity=0.284 Sum_probs=151.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----c------------------------eeeecC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----N------------------------RCDISQ 220 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----~------------------------~~~v~q 220 (521)
+...++++|||+|++||.++|+|.||||||-..+.++|+++.... + .+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999875311 1 134444
Q ss_pred Ccc--ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc
Q 044321 221 HDV--HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC 298 (521)
Q Consensus 221 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 298 (521)
++. +-|-.|+...+.-..+++ ....+...+.++-++|+.+|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~H---------------------------------rg~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLH---------------------------------RGLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHH---------------------------------hcccHHHHHHHHHHHHHHcCCCch
Confidence 432 122223322222221111 112233455677889999999875
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhh
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDL 374 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l 374 (521)
.... +.++..|||||||||.||.||+++|++||.||||+++|. +|.+.|+++-.++ +..++.+||+..-+.++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5433 467889999999999999999999999999999997665 5666666665544 45566678999999999
Q ss_pred cCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+|+|+||.+|+||++|+.+.+ |..|.+..+...+.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~l--------F~~PqHpYTr~Ll~ 259 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETL--------FAAPQHPYTRKLLA 259 (534)
T ss_pred hhhEEEEeccEEeecCcHHHH--------hhCCCChHHHHHHh
Confidence 999999999999999999988 55677766655554
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=275.04 Aligned_cols=190 Identities=18% Similarity=0.247 Sum_probs=135.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------------------eeeecCCc---cccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------------------RCDISQHD---VHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------------------~~~v~q~d---~~~~~ 227 (521)
..+|+||||.|++|++++|+||||||||||+++|+|+++|+.+. .+|++|+. ..++.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 35999999999999999999999999999999999998765210 13555542 23455
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
+|+.+|..+..-.... . ..++. ........+..+++.+++. ...++.++
T Consensus 341 ~~~~~~~~~~~~~~~~-~-------------~~~~~--------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 390 (491)
T PRK10982 341 LDIGFNSLISNIRNYK-N-------------KVGLL--------------DNSRMKSDTQWVIDSMRVKTPGHRTQIG-- 390 (491)
T ss_pred CcHHHheehhhhhhhc-c-------------ccccc--------------CcHHHHHHHHHHHHhcCccCCCcccccc--
Confidence 6665553221000000 0 00000 0001122456688889995 45566665
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|+||||||||+++|....+.+.+++..+ .+.+||+++|+.+++..+||++++|++|
T Consensus 391 ---~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 391 ---SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred ---cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECC
Confidence 59999999999999999999999999999998887777666665332 2455666778889999999999999999
Q ss_pred EEEEecCHh
Q 044321 385 HIVYQGPRE 393 (521)
Q Consensus 385 ~iv~~G~~~ 393 (521)
+++..++.+
T Consensus 468 ~i~~~~~~~ 476 (491)
T PRK10982 468 LVAGIVDTK 476 (491)
T ss_pred EEEEEEccc
Confidence 999877653
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-30 Score=232.98 Aligned_cols=176 Identities=22% Similarity=0.316 Sum_probs=140.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-------------------eeeecCCccccCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-------------------RCDISQHDVHIGEMT 229 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-------------------~~~v~q~d~~~~~lT 229 (521)
+...||+++||.+.+||..+|.||||||||||+|+++.++.|+.+. ..|+.|.+.+|+ -|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg-~t 92 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG-DT 92 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc-cc
Confidence 4567999999999999999999999999999999999999887421 178889888776 59
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-ccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~ 308 (521)
|.+|+.|.-+.+.. ++++ .....+|+.++|++. .++.+
T Consensus 93 VeDNlifP~~~r~r-------------------r~dr-----------------~aa~~llar~~l~~~~L~k~i----- 131 (223)
T COG4619 93 VEDNLIFPWQIRNR-------------------RPDR-----------------AAALDLLARFALPDSILTKNI----- 131 (223)
T ss_pred hhhccccchHHhcc-------------------CCCh-----------------HHHHHHHHHcCCchhhhcchh-----
Confidence 99999997543211 1211 123447888888764 34333
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
..||||||||++|+|-|..-|+||+|||||+++|....+.+..+++.. +...++-++|+..+..+.||+++-+..|+
T Consensus 132 t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCc
Confidence 459999999999999999999999999999988877666666665543 45667778888889999999999999987
Q ss_pred E
Q 044321 386 I 386 (521)
Q Consensus 386 i 386 (521)
+
T Consensus 212 ~ 212 (223)
T COG4619 212 A 212 (223)
T ss_pred c
Confidence 5
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=272.62 Aligned_cols=248 Identities=15% Similarity=0.149 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC---CC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI---SL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFL 158 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~---~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l 158 (521)
.+....+++|+.++++..++... ..+..+..+. .. ....++|+|+++.+...
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~--------------------- 350 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEP--ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP--------------------- 350 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccc--cccccccccccccccCCCCceEEEEEEEEEeCCC---------------------
Confidence 67778899999998753111000 0000000000 11 12469999999997310
Q ss_pred hhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHH
Q 044321 159 NSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
......+|+|+||+|++|++++|+||||||||||+++|+|+++|+. +..++.+.+. ...+..+ +..
T Consensus 351 --------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~-G~i~~~g~~i--~~~~~~~---~~~ 416 (555)
T TIGR01194 351 --------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE-GEILLDGAAV--SADSRDD---YRD 416 (555)
T ss_pred --------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEEC--CCCCHHH---HHh
Confidence 0012359999999999999999999999999999999999998863 2233322221 1111111 000
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc-cCccCCCCChHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV-GDEILRGISGGQRK 317 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v-g~~~~r~LSGGqrQ 317 (521)
....+.+...++... .++. ..++. ....+..+++.+++.+..+... |.+....|||||||
T Consensus 417 ~i~~v~q~~~lf~~t-i~~n---~~~~~---------------~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 417 LFSAIFADFHLFDDL-IGPD---EGEHA---------------SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred hCcEEccChhhhhhh-hhcc---cccch---------------hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 111111111111110 0000 00100 0112344566666654332221 11112469999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH-HHH---HcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ-FIH---ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~-l~~---~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|++|||||+.+|++|||||||+++|.+..+.+.+ +.+ ..++|+|+++ |+. ...+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiis-H~~-~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS-HDD-QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-ccH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999888777754 322 2245555554 554 46679999999999999854
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=298.45 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC-CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL-PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.++...+++|+.+.++.+.+.. ...+...... ....++++|+++.+..
T Consensus 600 ~~~a~~s~~Ri~~~l~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------------- 648 (1522)
T TIGR00957 600 IVQASVSLKRLRIFLSHEELEP-----DSIERRTIKPGEGNSITVHNATFTWAR-------------------------- 648 (1522)
T ss_pred HHHHHHHHHHHHHHHcCccccc-----ccccccccCCCCCCcEEEEEeEEEcCC--------------------------
Confidence 6778889999999887654310 0000000111 1125889999987520
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHH
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
...++|+|+||+|++|++++|+|||||||||||++|+|.++|..+ ..+|++|++.+ +..||+||+.|
T Consensus 649 ------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l-~~~Ti~eNI~~ 721 (1522)
T TIGR00957 649 ------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI-QNDSLRENILF 721 (1522)
T ss_pred ------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc-cCCcHHHHhhc
Confidence 123599999999999999999999999999999999999987642 23899998765 56899999998
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCccccccccCccCCCCChHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~r~LSGGq 315 (521)
+.... . + . .+...+++ .+.+.++ +++..+|.+|+ .+..|||||
T Consensus 722 g~~~~---~--~---~---------------~~~~~~~~------------~l~~~l~~~~~g~~t~ig~-~g~~LSGGQ 765 (1522)
T TIGR00957 722 GKALN---E--K---Y---------------YQQVLEAC------------ALLPDLEILPSGDRTEIGE-KGVNLSGGQ 765 (1522)
T ss_pred CCccC---H--H---H---------------HHHHHHHh------------CCHHHHHhcCCCCCceecC-CCCCCCHHH
Confidence 63210 0 0 0 00001111 0112222 45567888886 466899999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH----cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI----LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~----~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||||+|||||+.+|+++||||||+++|....+.+.+.+.. ..+.++|+++|+...+ ..||+|++|++|++++.|+
T Consensus 766 kqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l-~~~D~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL-PQVDVIIVMSGGKISEMGS 844 (1522)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhh-hhCCEEEEecCCeEEeeCC
Confidence 9999999999999999999999999998887777665531 2234444455665554 5599999999999999999
Q ss_pred HhHHH
Q 044321 392 REYVL 396 (521)
Q Consensus 392 ~~~v~ 396 (521)
++++.
T Consensus 845 ~~~l~ 849 (1522)
T TIGR00957 845 YQELL 849 (1522)
T ss_pred HHHHH
Confidence 98885
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=251.12 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=123.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeec-CCc---cccCCCCHHHHHHHHHH----hccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS-QHD---VHIGEMTVRETLAFSAR----CQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~-q~d---~~~~~lTV~E~l~f~~~----~~~~ 243 (521)
.+|+|+| .+.+|++++|+|||||||||||++|+|+++|+.+ ..... ..+ ..+....+.....-..+ ...+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G-~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG-KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 5999999 4999999999999999999999999999988632 22100 000 01111111110000000 0000
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.+....... ...+ .+... .........+..+++.+||.+..+..+. .|||||||||+||+
T Consensus 93 ~~~~~~~~~-~~~~------------~i~~~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~lar 152 (255)
T cd03236 93 PQYVDLIPK-AVKG------------KVGEL--LKKKDERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAA 152 (255)
T ss_pred cchhccCch-HHHH------------HHHHH--hchhHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 000000000 0000 00000 0111223456778999999877766554 59999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
+|+.+|+++||||||+++|....+.+.+++++. .+.+|++++|+...+..+||+|++| +|++++.|
T Consensus 153 al~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 153 ALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 999999999999999998887665555554432 2456667788888888899999999 56676655
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=294.99 Aligned_cols=189 Identities=19% Similarity=0.264 Sum_probs=142.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
+++|+||||+|++|++++|+|||||||||||++|+|.++|..+ ..+|++|++.+++ .||+||+.|+.... .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~-~Ti~eNI~~g~~~~--~ 515 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP-GTIKDNIIFGLSYD--E 515 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCC-ccHHHHHHhccccc--h
Confidence 4699999999999999999999999999999999999988643 2489999987766 59999999863210 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
.++ ....+++. .+..++. ++...+|.+|+. +..|||||||||+||||
T Consensus 516 ~~~---------------------~~~~~~~~---------L~~~l~~--l~~g~~t~vg~~-g~~LSgGqkqRi~lARA 562 (1490)
T TIGR01271 516 YRY---------------------TSVIKACQ---------LEEDIAL--FPEKDKTVLGEG-GITLSGGQRARISLARA 562 (1490)
T ss_pred HHH---------------------HHHHHHHh---------HHHHHHh--ccccccccccCc-CCCcCHHHHHHHHHHHH
Confidence 000 00011110 1122222 344557888864 67899999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHH-HHH-cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQF-IHI-LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~-~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+.+|+++||||||+++|....+.+.+. +.. .+++++|+++|+...+ ..||+|++|++|++++.|+++++.
T Consensus 563 l~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 563 VYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999998887777653 222 2344555556666555 469999999999999999998885
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=272.85 Aligned_cols=220 Identities=18% Similarity=0.162 Sum_probs=146.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC---CCCCCceeeecCCccccCCCCHHHHHHHHHH--hccCc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL---DSSLKNRCDISQHDVHIGEMTVRETLAFSAR--CQGVG 244 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l---~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~--~~~~~ 244 (521)
.+.+|+|+||+|.+|++++|+|||||||||||++|+|.. .|+.....|+.|+. .....|+.+.+.-... .....
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~-~g~~~t~~~~v~~~~~~~~~~~~ 267 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEV-VGDDTTALQCVLNTDIERTQLLE 267 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccC-CCCCCCHHHHHHHhhHHHHHHHH
Confidence 346999999999999999999999999999999999964 23323345777753 2345676554321100 00000
Q ss_pred hhhHHHHHHHHHHH------hcCC--C--CCCCh-HHHHH----HHhhhchhhhhHHHHHHHHcCCC-ccccccccCccC
Q 044321 245 SRYEMLAELTRREK------AAGI--K--PDPDI-DVFMK----AAATEGQEVSVITDYILKILGLD-VCADTMVGDEIL 308 (521)
Q Consensus 245 ~~~~~~~~l~~~e~------~~~i--~--~~~~~-~~~~~----~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~ 308 (521)
....+......... .... . +.... ..+.. .....+...+.++..+|..+||. +..++.++
T Consensus 268 ~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~---- 343 (718)
T PLN03073 268 EEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATK---- 343 (718)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchh----
Confidence 00000000000000 0000 0 00000 00101 11112334556778899999996 34555554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV- 387 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv- 387 (521)
.|||||||||+||++|+.+|++|||||||+++|......|.+++...++| +|+++|+...+..+||+|++|++|+++
T Consensus 344 -~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~t-viivsHd~~~l~~~~d~i~~l~~g~i~~ 421 (718)
T PLN03073 344 -TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKT-FIVVSHAREFLNTVVTDILHLHGQKLVT 421 (718)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 59999999999999999999999999999999999999999998877655 555678888889999999999999996
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
|.|+.+.+.
T Consensus 422 ~~g~~~~~~ 430 (718)
T PLN03073 422 YKGDYDTFE 430 (718)
T ss_pred eCCCHHHHH
Confidence 778776543
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=224.40 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=108.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+++||++++||+++|+||||||||||+++|+|+++|. .+..++... ..+.
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~----------------~~i~---------- 66 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGST----------------VKIG---------- 66 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCe----------------EEEE----------
Confidence 6999999999999999999999999999999999998765 223333220 0000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
+...||+||+||++|||||+.+|++
T Consensus 67 -------------------------------------------------------~~~~lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 -------------------------------------------------------YFEQLSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred -------------------------------------------------------EEccCCHHHHHHHHHHHHHhcCCCE
Confidence 0112999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
++|||||+++|......+.+++.+.+. ++++++|+.+++..+||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~~~-til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEYPG-TVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999888877654 56667788888889999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=229.48 Aligned_cols=154 Identities=23% Similarity=0.231 Sum_probs=109.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
.+++|+|+||+|++|++++|+|||||||||||++|.+ . .+...+......+. ++.+.| +.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~--~---~G~v~~~~~~~~~~----~~~~~~------~~----- 66 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--A---SGKARLISFLPKFS----RNKLIF------ID----- 66 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh--c---CCcEEECCcccccc----cccEEE------Eh-----
Confidence 4579999999999999999999999999999999964 1 11122211100000 000000 00
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
+ .++++.++|.. ..+..+ +.||||||||++||+||+.+
T Consensus 67 ------------------------------q------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~ 105 (176)
T cd03238 67 ------------------------------Q------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSE 105 (176)
T ss_pred ------------------------------H------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhC
Confidence 0 23577888865 355444 46999999999999999999
Q ss_pred --CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 329 --AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 329 --P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|++|||||||+++|....+.+.+.+.+. .+.+||+++|+...+ ..||++++|.+|+
T Consensus 106 ~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~ 165 (176)
T cd03238 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGS 165 (176)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCC
Confidence 9999999999998888777776665543 345566667777665 6899999996643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=281.71 Aligned_cols=189 Identities=24% Similarity=0.337 Sum_probs=165.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++++|+.|++||+.+++|||||||||++++|+|...|+.+ .-+|+||.|.+++.+|.+|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 99999999999999999999999999999999999887631 1289999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
++.+.++++|.... +....++.+++.+||.+++++.++. +|
T Consensus 660 hL~~~arlrG~~~~----------------------------------di~~~v~~ll~~~~L~~~~~~~~~~-----yS 700 (885)
T KOG0059|consen 660 HLEFYARLRGLPRS----------------------------------DIGSAIEKLLRLVGLGPYANKQVRT-----YS 700 (885)
T ss_pred HHHHHHHHcCCChh----------------------------------HHHHHHHHHHHHcCChhhhccchhh-----CC
Confidence 99999999886421 1223467899999999999988765 99
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||+|+|+++|.||+++|++++|||||+++|+...+.+-++++.. ++..+|.++|.++|+..+|||+.+|.+|++...|
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 99999999999999999999999999999987777766665543 2337777889999999999999999999999999
Q ss_pred CHhHHHHHHH
Q 044321 391 PREYVLEFFK 400 (521)
Q Consensus 391 ~~~~v~~~f~ 400 (521)
+++++...|.
T Consensus 781 s~q~LKsrfG 790 (885)
T KOG0059|consen 781 SPQELKSRYG 790 (885)
T ss_pred ChHHHHhhcC
Confidence 9999987764
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=225.88 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=110.9
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
+++.+++++ ++|++|++++|+||||||||||+++|+|+++|+. +...+...+ +.+ ..+
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~-----------i~~------~~q--- 68 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGIT-----------PVY------KPQ--- 68 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-cEEEECCEE-----------EEE------Ecc---
Confidence 456789885 9999999999999999999999999999988753 223332211 000 000
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
+ ..|||||||||+||++|+.+
T Consensus 69 ---------------------------------------------------~--------~~LSgGq~qrv~laral~~~ 89 (177)
T cd03222 69 ---------------------------------------------------Y--------IDLSGGELQRVAIAAALLRN 89 (177)
T ss_pred ---------------------------------------------------c--------CCCCHHHHHHHHHHHHHhcC
Confidence 0 01999999999999999999
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe--cCHhHH
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ--GPREYV 395 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~--G~~~~v 395 (521)
|++++|||||+++|....+.+.+++.+. ++.++++++|+...+..+||++++|+++-.++. |++...
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcch
Confidence 9999999999998888777666655432 335666778888888899999999998877655 555433
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=287.04 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=138.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|.++|..+ ..+|++|++.++ ..||+||+.|+...
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~-~~Tv~enI~~~~~~--- 747 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIM-NATVRGNILFFDEE--- 747 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccC-CCcHHHHHHcCChh---
Confidence 45799999999999999999999999999999999999987632 248999987654 68999999985210
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
..+ .. +...+.+ ..+..++.+ ++..+|.+|+ .+..|||||||||+|||
T Consensus 748 --~~~---~~---------------~~~~~~~---------~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLAR 795 (1560)
T PTZ00243 748 --DAA---RL---------------ADAVRVS---------QLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLAR 795 (1560)
T ss_pred --hHH---HH---------------HHHHHHh---------hhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHH
Confidence 000 00 0000000 112233433 2233556664 45679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHH-HH-HHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQ-FI-HILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~-l~-~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+.+|++|||||||+++|....+.+.+ ++ ....+.++|+++|+...+ ..||+|++|++|++++.|+.+++.
T Consensus 796 Al~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999876555543 21 222344455556666555 679999999999999999998875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=272.49 Aligned_cols=239 Identities=21% Similarity=0.273 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.-+...+++|+.+.+..+.... +...+...+.+...|.++|.+++=+
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~~-----~~~~~~~~~~~~~~i~i~~~sfsW~---------------------------- 529 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELDP-----DSVERSPDEAGENAIEIKNGSFSWD---------------------------- 529 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccCc-----cccccCCCCCCCceEEEeeeeEecC----------------------------
Confidence 5567888899988876654321 0111123334445688888887621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------CceeeecCCccccCCCCHHHHHHHH
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------KNRCDISQHDVHIGEMTVRETLAFS 237 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------~~~~~v~q~d~~~~~lTV~E~l~f~ 237 (521)
.......|+||||+|++|+++||+||-|||||+||.+|.|.++... +..+|++|.+.. .+.||+|||.|+
T Consensus 530 ---~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI-~ngTvreNILFG 605 (1381)
T KOG0054|consen 530 ---SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI-QNGTVRENILFG 605 (1381)
T ss_pred ---CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh-hCCcHHHhhhcC
Confidence 0122348999999999999999999999999999999999887642 234899998764 568999999998
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
.... .++| +...++++... | ++ -|+.+-.|.||++. -+|||||||
T Consensus 606 ~~~d--~~rY---------------------~~Vi~aC~L~~-------D--le--~Lp~GD~TeIGErG-inLSGGQKq 650 (1381)
T KOG0054|consen 606 SPYD--EERY---------------------DKVIKACALKK-------D--LE--ILPFGDLTEIGERG-INLSGGQKQ 650 (1381)
T ss_pred cccc--HHHH---------------------HHHHHHccCHh-------H--Hh--hcCCCCcceecCCc-cCCcHhHHH
Confidence 4321 0011 11222222211 0 11 25667789999854 469999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--c-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhH
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--L-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREY 394 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~ 394 (521)
|+++|||+..+++|++||.|.+++|..+-+.|.+-+-. + ++|+|+++ | ..+....||.|++|++|+|+..|+.++
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVT-H-ql~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVT-H-QLQFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEe-C-chhhhhhCCEEEEecCCeEecccCHHH
Confidence 99999999999999999999998888766655443221 2 35555554 4 346778999999999999999999999
Q ss_pred HH
Q 044321 395 VL 396 (521)
Q Consensus 395 v~ 396 (521)
+.
T Consensus 729 l~ 730 (1381)
T KOG0054|consen 729 LL 730 (1381)
T ss_pred HH
Confidence 97
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=225.70 Aligned_cols=188 Identities=23% Similarity=0.310 Sum_probs=138.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-------------------eeecCCcc--ccCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-------------------CDISQHDV--HIGE 227 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-------------------~~v~q~d~--~~~~ 227 (521)
..+.||+++|++|..|+++.|+|.||||||||+++|+|.+.|+.+.. +-|+|++. ..+.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 34679999999999999999999999999999999999988863210 34566543 5789
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHH--HcCCCccccccccC
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK--ILGLDVCADTMVGD 305 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--~lgL~~~~dt~vg~ 305 (521)
||+.||+..+..- |- +..+...+..+. .+. ...-++ -+||++..++.+|-
T Consensus 97 lTieENl~la~~R-g~--~rgl~~~ln~~~----------~~~---------------f~~~l~~l~lgLenrL~~~igl 148 (263)
T COG1101 97 LTIEENLALAESR-GK--KRGLSSALNERR----------RSS---------------FRERLARLGLGLENRLSDRIGL 148 (263)
T ss_pred ccHHHHHHHHHhc-Cc--ccccchhhhHHH----------HHH---------------HHHHHhhcccchhhhhcChhhh
Confidence 9999999987532 11 000000000000 000 011222 35778888888886
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|||||||-|+++.|.+++|+||||||-|+++|+.....+.+ ++.+.+-|+++ +||++..+.++.+|.|+|
T Consensus 149 -----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlM-VTHnm~~Al~yG~RlImL 222 (263)
T COG1101 149 -----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM-VTHNMEDALDYGNRLIML 222 (263)
T ss_pred -----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEE-EeccHHHHHhhCCeEEEE
Confidence 99999999999999999999999999999877765555544 44443455555 568899999999999999
Q ss_pred eCCEEEEec
Q 044321 382 SNGHIVYQG 390 (521)
Q Consensus 382 ~~G~iv~~G 390 (521)
++|+||.+-
T Consensus 223 h~G~IvlDv 231 (263)
T COG1101 223 HSGKIVLDV 231 (263)
T ss_pred eCCeEEEEc
Confidence 999999763
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=264.15 Aligned_cols=192 Identities=20% Similarity=0.274 Sum_probs=124.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecC--Ccc--ccCCCCHHHHHH-HHH---Hhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ--HDV--HIGEMTVRETLA-FSA---RCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q--~d~--~~~~lTV~E~l~-f~~---~~~~ 242 (521)
..+|++++ .+++|++++|+|||||||||||++|+|++.|+.+. ..... +.. .+....+..... ... .+..
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD-YEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc-ccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 46999999 99999999999999999999999999999886321 11000 000 000000100000 000 0000
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
..+.....+.+ . ......... ..+....++++++.+||.+..++.+++ |||||||||+||
T Consensus 165 ~~q~~~~~p~~---------~-~~tv~e~l~-----~~~~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia 224 (590)
T PRK13409 165 KPQYVDLIPKV---------F-KGKVRELLK-----KVDERGKLDEVVERLGLENILDRDISE-----LSGGELQRVAIA 224 (590)
T ss_pred cccchhhhhhh---------h-cchHHHHHH-----hhhHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHH
Confidence 00000000000 0 001111110 011234567899999999888877764 999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+||+.+|++|||||||+++|......+.++++.+ .+.+||+++|+...+..++|+|++|++|
T Consensus 225 ~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999988777777766554 1456666788889999999999999863
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=230.30 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=76.1
Q ss_pred HHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEE
Q 044321 288 YILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILI 362 (521)
Q Consensus 288 ~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii 362 (521)
.+|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|||||||+++|....+.+.+++... .+.+++
T Consensus 119 ~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii 193 (226)
T cd03270 119 GFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193 (226)
T ss_pred HHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4688899975 355554 469999999999999999998 599999999988876666665554332 244555
Q ss_pred EEecChhHHHhhcCeEEEE------eCCEEEEec
Q 044321 363 SLLQPAPETYDLFDDIILI------SNGHIVYQG 390 (521)
Q Consensus 363 ~i~h~~~~~~~l~D~VivL------~~G~iv~~G 390 (521)
+++|+...+ .+||+|++| ++|+||++|
T Consensus 194 ~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 194 VVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 566776665 699999999 999999987
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=220.49 Aligned_cols=160 Identities=29% Similarity=0.371 Sum_probs=127.8
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce------------------eeecCCccccCCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR------------------CDISQHDVHIGEMT 229 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~------------------~~v~q~d~~~~~lT 229 (521)
.+..+++.++||++.+||++-|.|||||||||||++|+|++.|..+.. -|+.-++-.-+++|
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 456789999999999999999999999999999999999998863211 12222333456789
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|.||+.|-..+.+... ...+.+.++.+||....|.+++.
T Consensus 92 a~ENL~F~~~~~~~~~-------------------------------------~~~i~~Al~~vgL~g~~dlp~~~---- 130 (209)
T COG4133 92 ALENLHFWQRFHGSGN-------------------------------------AATIWEALAQVGLAGLEDLPVGQ---- 130 (209)
T ss_pred HHHHHHHHHHHhCCCc-------------------------------------hhhHHHHHHHcCcccccccchhh----
Confidence 9999999765443210 11245578899999999988875
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChh
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAP 369 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~ 369 (521)
||-||||||+|||.++.++++.|||||++++|.+-+..|..++... ++.|+.++||+.+
T Consensus 131 -LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 131 -LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred -cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999888888776432 6777788887764
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=215.29 Aligned_cols=220 Identities=21% Similarity=0.261 Sum_probs=141.9
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCc--cccCCCCHHHHHHHHH-Hhc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHD--VHIGEMTVRETLAFSA-RCQ 241 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d--~~~~~lTV~E~l~f~~-~~~ 241 (521)
++.++.....+||||.+.|||+.+|+|.|||||||||++|++.+.|+.....|..... .-+..|+-.|--.+.. ...
T Consensus 13 sk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 13 SKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred hhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 4445666789999999999999999999999999999999999999865555544322 1122222222111000 000
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChH-HHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDID-VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
.+.+... ..+ ........++. ..|..-...--.+......+|+.+.++... + ++.++.+||||+||+.
T Consensus 93 ~VhQnP~--DGL-----Rm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQ 161 (258)
T COG4107 93 FVHQNPR--DGL-----RMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQ 161 (258)
T ss_pred eeecCcc--ccc-----eeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHH
Confidence 0100000 000 00000111221 122221111123344556688888876432 2 3467889999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|||-|+..|+++||||||.++|..+ .+.++.+..+++-.++| ++|+...+.-++|+.++|.+|++++.|-.+.++
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~vi-VTHDl~VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI-VTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEE-EechhHHHHHhhhcceeecCCCEeccccccccc
Confidence 9999999999999999999766554 55556666655555554 568877777889999999999999999988884
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=216.67 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=137.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
....+++.|||+++.|+.++|+|.||||||||.|+|+|.++|+. +...+..+..++....-|- .+++.+++...
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs-G~il~n~~~L~~~Dy~~R~-----k~IRMiFQDpn 97 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRS-----KRIRMIFQDPN 97 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC-ceEEECCccccccchHhhh-----hheeeeecCCc
Confidence 34568999999999999999999999999999999999998873 2333333333332211110 00111111100
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC-CccccccccCccCCCCChHHHHHHHHHHHHcC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL-DVCADTMVGDEILRGISGGQRKRVTTGEMLVG 327 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~ 327 (521)
..+..+.....+.. ..............++.+.+.|+.+|| ++.++-++ .-||-||||||++||||+.
T Consensus 98 --ts~NPRl~iGqiLd----~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~QKQRVaLARALIL 166 (267)
T COG4167 98 --TSLNPRLRIGQILD----FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQKQRVALARALIL 166 (267)
T ss_pred --cccChhhhhhhHhc----chhhhcccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchhHHHHHHHHHHhc
Confidence 00000000000000 000000111122344566778999998 45555444 4699999999999999999
Q ss_pred CCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 328 PAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+|+|+|.||..+++|.. +.+.+.++-.+ .+...|.++|+...+..++|.|+||++|++|+.|.+.+++
T Consensus 167 ~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek-~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 167 RPKIIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred CCcEEEehhhhhhccHHHHHHHHHHHHHHHHH-hCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999998876654 44555554443 3566677789998999999999999999999999999983
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=265.39 Aligned_cols=242 Identities=21% Similarity=0.237 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+....++||+.+.++...|... .... .+-.-.-| ..+|.|+|+++.|...
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~-~~~~--~~pp~~WP~~G~I~f~~~~~RYrp~------------------------- 1151 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPL-EIEE--SRPPPSWPSKGEIEFEDLSLRYRPN------------------------- 1151 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCC-CCcC--CCCCCCCCCCCeEEEEEeEEEeCCC-------------------------
Confidence 55667889999999986665111 0000 01011123 4689999999998421
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
...||+||||+|+|||.+||+|..|||||||+++|-++..|..+ .-+.|||++.
T Consensus 1152 -------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv 1224 (1381)
T KOG0054|consen 1152 -------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV 1224 (1381)
T ss_pred -------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc
Confidence 22699999999999999999999999999999999999887532 1177899877
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| ..|||.||+-..+. +.+...++..... .....+ .++...|+.|
T Consensus 1225 LF-sGTvR~NLDPf~e~--------------------------sD~~IW~ALe~~~------Lk~~v~--~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1225 LF-SGTVRFNLDPFDEY--------------------------SDDEIWEALERCQ------LKDVVS--SLPGGLDSEV 1269 (1381)
T ss_pred ee-cCccccccCccccc--------------------------CHHHHHHHHHHhC------hHHHHh--hCCcCCCcee
Confidence 65 57999998643211 1122222221110 112222 4666688888
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH-cCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI-LEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~-~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+ .+.++|-||||-|++||||+++++||+|||+|++.|.+.-..+++.+++ ....||+++-|....+. -+|+|+||+
T Consensus 1270 ~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-d~DrVlVld 1347 (1381)
T KOG0054|consen 1270 SE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-DSDRVLVLD 1347 (1381)
T ss_pred cC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-hcCeEEEee
Confidence 75 5678999999999999999999999999999997665555555554433 24455555666666555 589999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|+|+++|+|.++++
T Consensus 1348 ~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLS 1362 (1381)
T ss_pred CCeEeecCChHHHHh
Confidence 999999999999974
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=208.46 Aligned_cols=162 Identities=23% Similarity=0.282 Sum_probs=127.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
.....|-+||++|.+||++.|+|||||||||||..+.|.+.+... ..+.++|++.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 445799999999999999999999999999999999998876521 227889999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
+|.+|+.|+...... +...+..++..|+..||....+..+
T Consensus 93 sVg~Nl~fAlp~~~K-----------------------------------G~aRr~~a~aAL~~~gL~g~f~~dP----- 132 (213)
T COG4136 93 SVGQNLLFALPATLK-----------------------------------GNARRNAANAALERSGLDGAFHQDP----- 132 (213)
T ss_pred ccccceEEecCcccc-----------------------------------cHHHHhhHHHHHHHhccchhhhcCh-----
Confidence 999999997432110 1112234566888999998877654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH----HcCCeEEEEEecChhHH
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH----ILEGTILISLLQPAPET 371 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~----~~~~t~ii~i~h~~~~~ 371 (521)
.+||||||-||++-|+|+..|+.++||||++.+|....+.+++++- ..+..++.+ +|+...+
T Consensus 133 ~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~V-THD~~Dv 198 (213)
T COG4136 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQV-THDLQDV 198 (213)
T ss_pred hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEE-ecccccC
Confidence 4699999999999999999999999999999888877777777653 234455554 4555443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=242.70 Aligned_cols=188 Identities=27% Similarity=0.320 Sum_probs=146.4
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccc-cCCCCHHHH
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVH-IGEMTVRET 233 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~-~~~lTV~E~ 233 (521)
....+.+.+.+++++||.|.+|+.++|+||||+|||||||+|+|.+.|..+ ..+|+.|+... .+..|+.+.
T Consensus 327 ~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~ 406 (530)
T COG0488 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEE 406 (530)
T ss_pred cccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHH
Confidence 334443447899999999999999999999999999999999998876522 13888887633 366678776
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCC
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGIS 312 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LS 312 (521)
+.-.. |+.. +..+...|..|++.. ...+.|+ .||
T Consensus 407 l~~~~-------------------------~~~~---------------e~~~r~~L~~f~F~~~~~~~~v~-----~LS 441 (530)
T COG0488 407 LSEGF-------------------------PDGD---------------EQEVRAYLGRFGFTGEDQEKPVG-----VLS 441 (530)
T ss_pred HHhhC-------------------------cccc---------------HHHHHHHHHHcCCChHHHhCchh-----hcC
Confidence 64321 0000 112345788888864 3345554 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE-ecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY-QGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~-~G~ 391 (521)
||||.||.+|..++.+|.+|||||||+.+|.+.++.|.+.+....+|+|++ +|+...+..+|++++++.+ ++.. .|.
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V-SHDr~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV-SHDRYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999999999999999999888887775 5888899999999999998 6544 477
Q ss_pred HhHHHH
Q 044321 392 REYVLE 397 (521)
Q Consensus 392 ~~~v~~ 397 (521)
.++..+
T Consensus 520 y~~y~~ 525 (530)
T COG0488 520 YEDYLE 525 (530)
T ss_pred HHHHHH
Confidence 766544
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=206.32 Aligned_cols=118 Identities=35% Similarity=0.479 Sum_probs=96.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHHHH
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
|+|||++|++|++++|+||||||||||+++|+|...+..+ ..+|++|++.+++.+||.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999876421 116677776777777777760
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
....++.+++.+++.+..++.++. ....||||
T Consensus 81 -----------------------------------------------~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~G 112 (137)
T PF00005_consen 81 -----------------------------------------------SDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGG 112 (137)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHH
T ss_pred -----------------------------------------------cccccccccccccccccccccccc-ccchhhHH
Confidence 012346678889988888888754 33679999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCh
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISN 339 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs 339 (521)
|||||+||+||+.+|++|||||||+
T Consensus 113 e~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 113 EKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=207.15 Aligned_cols=143 Identities=28% Similarity=0.416 Sum_probs=107.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+++|++|++|++++|+||||||||||+++|+|.+++. .+..++...+.. ... ...
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~--~~~---~~~---------------- 70 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIA--KLP---LEE---------------- 70 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcc--cCC---HHH----------------
Confidence 6999999999999999999999999999999999998764 333444332210 000 000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
....++. ..+|||||+||++||++++.+|++
T Consensus 71 -------------------------------------~~~~i~~------------~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 71 -------------------------------------LRRRIGY------------VPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred -------------------------------------HHhceEE------------EeeCCHHHHHHHHHHHHHhcCCCE
Confidence 0000111 112999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
++|||||+++|......+.+++... ++.++++++|+...+..+||++++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999998887777776665443 23567777888888889999999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=221.75 Aligned_cols=209 Identities=20% Similarity=0.218 Sum_probs=126.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh-----CCCC-----CC----------CCceeeecCCccccC-C--
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA-----GKLD-----SS----------LKNRCDISQHDVHIG-E-- 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La-----G~l~-----~~----------~~~~~~v~q~d~~~~-~-- 227 (521)
..-|+|||+.|+.|++++|.|+||||||||++.+. ..+. |. .....+|.|.++.-. .
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 1110 10 011256666554211 1
Q ss_pred ----CCHHHHHH--HHHHhccCchhhHHHH----HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 228 ----MTVRETLA--FSARCQGVGSRYEMLA----ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 228 ----lTV~E~l~--f~~~~~~~~~~~~~~~----~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
..|.+.+. |...|+|.....+.+. ..+..+ ..+............. ........+|+.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~-----v~~ltv~e~~~~~~~~--~~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIAD-----VLDMTVEEALEFFENI--PKIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHH-----HhcCCHHHHHHHHHhh--hhHHHHHHHHHHcCCch
Confidence 11222221 1112333211111000 000000 0011111111111100 01123556889999976
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHcCC---CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHH
Q 044321 298 -CADTMVGDEILRGISGGQRKRVTTGEMLVGP---AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPET 371 (521)
Q Consensus 298 -~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~---P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~ 371 (521)
..+..+ ..|||||+||+.||++|+.+ |+++||||||++++....+.+.+++.++ .+.++|+++|+...+
T Consensus 161 l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i 235 (261)
T cd03271 161 IKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235 (261)
T ss_pred hhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 345444 46999999999999999996 7999999999998887777776666543 244555566776665
Q ss_pred HhhcCeEEEE------eCCEEEEecCH
Q 044321 372 YDLFDDIILI------SNGHIVYQGPR 392 (521)
Q Consensus 372 ~~l~D~VivL------~~G~iv~~G~~ 392 (521)
..||++++| ++|+|+++|++
T Consensus 236 -~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 -KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 579999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=220.07 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=144.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-CceeeecCCccccCCCCHHHHHH-HHHHhccCchhh
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-KNRCDISQHDVHIGEMTVRETLA-FSARCQGVGSRY 247 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-~~~~~v~q~d~~~~~lTV~E~l~-f~~~~~~~~~~~ 247 (521)
++.+++|++|.+.+|+-++|+|||||||||+|++|+|...|.. ....|...........++-+.+. +..... .+.
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~---~rl 163 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHER---KRL 163 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHH---HHH
Confidence 3579999999999999999999999999999999999887742 22233222222222223222222 221110 011
Q ss_pred HHH-HHHHHHHHhcCCCCCCCh----HHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHHHHH
Q 044321 248 EML-AELTRREKAAGIKPDPDI----DVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTT 321 (521)
Q Consensus 248 ~~~-~~l~~~e~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaI 321 (521)
+.. ..+.. ...+.+. +.+...........+..+-.+|..+|.. +..+..+ .+||||+|.|+++
T Consensus 164 e~~~E~l~~------~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 164 EYLAEDLAQ------ACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAAL 232 (614)
T ss_pred HHHHHHHHh------hccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHH
Confidence 100 01100 0011111 1222233344444555666677777764 4455554 4599999999999
Q ss_pred HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCE-EEEecCHhHHH
Q 044321 322 GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH-IVYQGPREYVL 396 (521)
Q Consensus 322 AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~-iv~~G~~~~v~ 396 (521)
||+|..+|++|+|||||+++|.+.+.+|.+++.+....++++++|+.+.+-.+|.+|+-|.+++ +.|.|+.+...
T Consensus 233 Ar~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999999999999999999999999999999988776456667788888899999999999999 56678877653
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=192.00 Aligned_cols=197 Identities=20% Similarity=0.249 Sum_probs=128.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccc--cCCCCHHHHHHHHHHhcc-Cchh
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH--IGEMTVRETLAFSARCQG-VGSR 246 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~--~~~lTV~E~l~f~~~~~~-~~~~ 246 (521)
..++|+||||+++.||+++|=|||||||||||++|-|-+.|+.+ .+.|.-.+.. +-....++-+....+.-| +.+.
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G-~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEG-QILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCc-eEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 35799999999999999999999999999999999999888632 2333222211 122333444433222111 1111
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHH---hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 247 YEMLAELTRREKAAGIKPDPDIDVFMKAA---ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 247 ~~~~~~l~~~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
....+.+ +.++.+++.. ..........+..+|..+++++..-.. .+.++||||||||-|||
T Consensus 102 LRviPRV------------~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaR 165 (235)
T COG4778 102 LRVIPRV------------SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIAR 165 (235)
T ss_pred HHhccCc------------chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhh
Confidence 1111111 1122222221 223344555677889999998755433 24579999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--cCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--LEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.++.+-+||+|||||+++|........+++.+ ..++.++=+-|+-+.-...|||++-+..
T Consensus 166 gfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999998776544444444432 2567777777876555678999988753
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-23 Score=199.21 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=103.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCccccCCCCHHHHHHHHHHhccCchh
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHDVHIGEMTVRETLAFSARCQGVGSR 246 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~ 246 (521)
+++++++.+| +++|+||||||||||+++|+|++.+.... ..+..+.+.. .... ..+...+++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~v~~vfq~ 84 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR--KPAN------FAEVTLTFDN 84 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC--CCCc------eEEEEEEEEc
Confidence 5789999999 99999999999999999999987543100 0000010000 0000 0011111110
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc
Q 044321 247 YEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326 (521)
Q Consensus 247 ~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv 326 (521)
. +.. + . ......++++++. .+..++.+ ..||||||||++||++|+
T Consensus 85 ~-------------------~~~-~----~---~~~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~ 129 (197)
T cd03278 85 S-------------------DGR-Y----S---IISQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFA 129 (197)
T ss_pred C-------------------CCc-e----e---EEehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHH
Confidence 0 000 0 0 0001234455554 33444444 469999999999999987
Q ss_pred ----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 327 ----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 327 ----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.+|+++||||||+++|......+.+++.+. .+.+||+++|+... .+.||+++.|..
T Consensus 130 ~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~-~~~~d~v~~~~~ 190 (197)
T cd03278 130 IFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGT-MEAADRLYGVTM 190 (197)
T ss_pred HhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH-HhhcceEEEEEe
Confidence 577999999999999988888887777654 23556666777665 478999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=204.53 Aligned_cols=180 Identities=14% Similarity=0.211 Sum_probs=121.0
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---C--CceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---L--KNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~--~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
++...+|+++++ ++++|+||||||||||+++|.-.+... . ...+++.+....++.+|+.+.+.+.....+
T Consensus 14 ~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (212)
T cd03274 14 YAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIID 88 (212)
T ss_pred CCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCC
Confidence 355679999987 899999999999999999998322111 1 123566777777777888876655433211
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
. ..+. ..++..... .......++++.++|++..++.++ .||+|||||++||
T Consensus 89 ~-------~~l~----~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la 139 (212)
T cd03274 89 K-------PLLK----SKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLA 139 (212)
T ss_pred H-------HHHH----HCCcCCCCC-------------ceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHH
Confidence 0 0000 001100000 000001345567788877777665 5999999999999
Q ss_pred HHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 323 EMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 323 raLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+|++. +|+++||||||+++|....+.+.+++.+. ++++|+++ |+ +++.++||+|++|..
T Consensus 140 ~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs-~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 140 LVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS-LR-NNMFELADRLVGIYK 204 (212)
T ss_pred HHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE-Cc-HHHHHhCCEEEEEEe
Confidence 99963 68999999999999988888877776655 34555554 54 578899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-22 Score=195.15 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=62.4
Q ss_pred cCCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+..||||||||++||++|+ .+|+++||||||+++|....+.+.+.+.+. .+++++++||. +++.++||++++|
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~~~~d~i~~l 233 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELLEVADKFYGV 233 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHhhCCEEEEE
Confidence 34569999999999999996 368999999999999988888777776654 35777777776 5688999999998
Q ss_pred e
Q 044321 382 S 382 (521)
Q Consensus 382 ~ 382 (521)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 6
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=213.15 Aligned_cols=171 Identities=23% Similarity=0.314 Sum_probs=127.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--------CceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--------KNRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
..|++.++.|++|+.+.|.||||||||||+|+|+|+.+-.. ....|++|.+ .+|..|.+|-+.+......
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P-Y~p~GtLre~l~YP~~~~~- 484 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP-YLPQGTLREALCYPNAAPD- 484 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC-CCCCccHHHHHhCCCCCCC-
Confidence 78999999999999999999999999999999999865321 2237888875 5677799998876422110
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC-ccCCCCChHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD-EILRGISGGQRKRVTTG 322 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-~~~r~LSGGqrQRvaIA 322 (521)
.. .+....+|..+||++..+..=.. +.-+-||+||||||++|
T Consensus 485 ----------------------~~---------------d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 485 ----------------------FS---------------DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred ----------------------CC---------------hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence 00 11234467777777655443211 23456999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|+|+++|+++||||.|+++|.+....+.+++++. -.++||++.|. +....+.++.+-+.
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr-~tl~~~h~~~l~l~ 587 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-PTLWNFHSRQLELL 587 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc-hhhHHHHhhheeec
Confidence 9999999999999999999999999999988752 46777777665 35566666655554
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=190.75 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=64.3
Q ss_pred cCCCCChHHHHHHHHHHHHcC----------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh
Q 044321 307 ILRGISGGQRKRVTTGEMLVG----------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL 374 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~----------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l 374 (521)
.+..|||||+||++||++|+. +|+++||||||+++|....+.+.+++.+. .+.++++++|+...+..+
T Consensus 120 ~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 120 PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199 (213)
T ss_pred CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh
Confidence 345699999999999999984 67899999999999887777766655443 245666677888888899
Q ss_pred cCeEEEEeCCE
Q 044321 375 FDDIILISNGH 385 (521)
Q Consensus 375 ~D~VivL~~G~ 385 (521)
+|++++|++|-
T Consensus 200 ~~~i~~~~~~~ 210 (213)
T cd03279 200 PQRLEVIKTPG 210 (213)
T ss_pred CcEEEEEecCC
Confidence 99999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=219.74 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeE
Q 044321 287 DYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGTI 360 (521)
Q Consensus 287 ~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ 360 (521)
..+|+.+||.. ..+..+ ..|||||+|||.||++|+.+| +++||||||++++......|.++++++ .+.+
T Consensus 811 l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~T 885 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNT 885 (943)
T ss_pred HHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788899975 345544 469999999999999999999 999999999998887777766665543 2445
Q ss_pred EEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 361 LISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 361 ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
||+++|+...+ ..||+|+.| ++|++++.|+++++.. +|. ..++.||..
T Consensus 886 VIiitH~~~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~--------~~~-s~t~~~l~~ 939 (943)
T PRK00349 886 VVVIEHNLDVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK--------VEA-SYTGRYLKP 939 (943)
T ss_pred EEEEecCHHHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh--------Ccc-cHHHHHHHH
Confidence 55566776665 579999999 7999999999998843 343 345666643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-21 Score=226.85 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=86.0
Q ss_pred hhHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHc---CCCcEEEEeCCChhhHHHHHHHHHHHHHHc--
Q 044321 283 SVITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLV---GPAQALFMDEISNSTTFQIVNSLRQFIHIL-- 356 (521)
Q Consensus 283 ~~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv---~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-- 356 (521)
...+ .+|+.+||.+. .+..+ ..|||||+|||+||++|+ .+|++|||||||++++....+.+.++++.+
T Consensus 787 ~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~ 860 (1809)
T PRK00635 787 HEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH 860 (1809)
T ss_pred HHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3344 37888999765 56554 459999999999999997 699999999999999887777666665443
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEEe------CCEEEEecCHhHHH
Q 044321 357 EGTILISLLQPAPETYDLFDDIILIS------NGHIVYQGPREYVL 396 (521)
Q Consensus 357 ~~t~ii~i~h~~~~~~~l~D~VivL~------~G~iv~~G~~~~v~ 396 (521)
.+.+||+++|+...+ ..||+|++|. +|++++.|+++++.
T Consensus 861 ~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 861 QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 345566677887777 8999999996 79999999999875
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-22 Score=196.80 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=61.2
Q ss_pred cCCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+..||||||||++||++|+ .+|++++|||||+++|....+.+.+++.+. .+.++|+++|. +++.+.||+++-+
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~ 241 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRT 241 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEE
Confidence 34569999999999999997 588999999999999988877777766543 34556666676 6888899999887
Q ss_pred e
Q 044321 382 S 382 (521)
Q Consensus 382 ~ 382 (521)
.
T Consensus 242 ~ 242 (251)
T cd03273 242 R 242 (251)
T ss_pred E
Confidence 5
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=184.97 Aligned_cols=179 Identities=27% Similarity=0.364 Sum_probs=137.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc------------------eeeecCCccccCCCCHHHHHH
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN------------------RCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~------------------~~~v~q~d~~~~~lTV~E~l~ 235 (521)
|-.+|+.+..||+.=++|||||||||||-.++|+++.+..+ .+|+.|+..-.+.|.|...+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 55689999999999999999999999999999988754211 166666666666677776665
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.- |+ ++....++++...++|++.....+ ..|||||
T Consensus 95 L~q-------------------------P~--------------~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGE 130 (248)
T COG4138 95 LHQ-------------------------PD--------------KTRTELLNDVAGALALDDKLGRST-----NQLSGGE 130 (248)
T ss_pred hcC-------------------------ch--------------HHHHHHHHHHHhhhcccchhhhhh-----hhcCccc
Confidence 431 10 111224577888899988776555 4699999
Q ss_pred HHHHHHHHHHcC-----C--CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 316 RKRVTTGEMLVG-----P--AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 316 rQRvaIAraLv~-----~--P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
=|||-+|-..+. | .++|+||||.+++|..-...|..++..+ .+.+||+..|+...+.+.+|++.+|+.|++
T Consensus 131 WQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l 210 (248)
T COG4138 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKL 210 (248)
T ss_pred ceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeE
Confidence 999999976653 3 3699999999998877666666665544 456666678999999999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
+..|.+++++
T Consensus 211 ~~~G~~~eVl 220 (248)
T COG4138 211 LASGRREEVL 220 (248)
T ss_pred Eeecchhhhc
Confidence 9999999885
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=201.83 Aligned_cols=185 Identities=21% Similarity=0.354 Sum_probs=137.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--------------------CceeeecCC---ccccCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--------------------KNRCDISQH---DVHIGEMT 229 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--------------------~~~~~v~q~---d~~~~~lT 229 (521)
.++||||++++||+++|.|--|||+|-|+++|.|..++.. .+.+||+.+ +-++..++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 4789999999999999999999999999999999654431 123788765 34688899
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~ 308 (521)
|.+|+.++ .+....... + + ........++...+.|++.. ..+..+
T Consensus 354 I~~Ni~l~-~l~~~~~~~-~---i------------------------~~~~e~~~~~~~~~~l~Ik~~s~~~~v----- 399 (500)
T COG1129 354 IAENITLA-SLRRFSRRG-L---I------------------------DRRKERALAERYIRRLRIKTPSPEQPI----- 399 (500)
T ss_pred HHHheehH-hhhhhcccc-c---c------------------------ChHHHHHHHHHHHHhcCcccCCccchh-----
Confidence 99999887 221110000 0 0 00111234566777777743 233444
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..||||.||+|.|||.|..+|++|||||||.+ ...+|.+.|++++. .+..|++++...+|+..+||||+||++|
T Consensus 400 ~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~--~G~ail~iSSElpEll~~~DRIlVm~~G 477 (500)
T COG1129 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA--EGKAILMISSELPELLGLSDRILVMREG 477 (500)
T ss_pred hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH--CCCEEEEEeCChHHHHhhCCEEEEEECC
Confidence 46999999999999999999999999999995 55678888888775 3555566677889999999999999999
Q ss_pred EEEEecCHh
Q 044321 385 HIVYQGPRE 393 (521)
Q Consensus 385 ~iv~~G~~~ 393 (521)
+++..-+.+
T Consensus 478 ri~~e~~~~ 486 (500)
T COG1129 478 RIVGELDRE 486 (500)
T ss_pred EEEEEeccc
Confidence 998754443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=204.62 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=139.5
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQ 241 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~ 241 (521)
++...+.++-.++++++|-|.+++.+++|||||+|||||||++.|.+.|..+. ..+.....++.. .++..+...+
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~--vs~~~H~~~~~y--~Qh~~e~ldl- 468 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGM--VSRHSHNKLPRY--NQHLAEQLDL- 468 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccc--ccccccccchhh--hhhhHhhcCc-
Confidence 33444444447999999999999999999999999999999999999886321 112222333311 1111111100
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTT 321 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaI 321 (521)
..+.. +..+..... ......+..+|..+||....++. +++.||+|||+||..
T Consensus 469 ----------~~s~l------------e~~~~~~~~--~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 469 ----------DKSSL------------EFMMPKFPD--EKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLF 520 (614)
T ss_pred ----------chhHH------------HHHHHhccc--cchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHH
Confidence 00001 111111110 11223456689999998554432 345799999999999
Q ss_pred HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHhHH
Q 044321 322 GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPREYV 395 (521)
Q Consensus 322 AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~~v 395 (521)
|+.++..|.+|+|||||+++|...++.+.+.+.+..+++|++ +|+.-.+.+++++|.+..+|.+ .+.|.....
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~v-SHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLV-SHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeee-echhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 999999999999999999999999999999998877777664 5778888899999999988776 466765543
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=215.53 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=82.5
Q ss_pred HHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcC---CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVG---PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~---~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
...+|+.+||... .+..+ ..|||||+|||.||++|+. +|+++||||||++++......|.++++++ .+.
T Consensus 808 ~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~ 882 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN 882 (924)
T ss_pred HHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3457888999752 44443 4699999999999999997 59999999999998887777776666543 345
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYV 395 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v 395 (521)
+||+++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 883 TVIvi~H~~~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 883 TVVVIEHNLDVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEEeCCHHHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 666667777666 579999999 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=203.24 Aligned_cols=188 Identities=23% Similarity=0.244 Sum_probs=129.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----ceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----NRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
+.+.+|++-++++..|+.++|+|+||+||||||++|+.-.-.... ...++.-.......-+.+..+..
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~------- 163 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLA------- 163 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHH-------
Confidence 456799999999999999999999999999999999971100000 00111000000000111111000
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.++. -..+....++.+.+|..+|+..-... .+.+.||||-|-|+++||
T Consensus 164 ------------~e~~----------------l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 164 ------------EEKE----------------LLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALAR 211 (582)
T ss_pred ------------hhhh----------------hhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHH
Confidence 0000 00011223345558889999754332 345679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHhHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPREYVL 396 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~~v~ 396 (521)
||..+|+||||||||+.+|...+.+|...+.... .++++++|++...-..|.+||-+++-++ .|.|..+++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK-ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC-ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999999999999999999988655 5666678999888899999999988777 5678776654
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-21 Score=183.51 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=58.1
Q ss_pred cCCCCChHHHHH------HHHHHHHcCCCcEEEEeCCChhhHHHHHH-HHHHHHHHcC---CeEEEEEecChhHHHhhcC
Q 044321 307 ILRGISGGQRKR------VTTGEMLVGPAQALFMDEISNSTTFQIVN-SLRQFIHILE---GTILISLLQPAPETYDLFD 376 (521)
Q Consensus 307 ~~r~LSGGqrQR------vaIAraLv~~P~iLlLDEPTs~~~~~i~~-~L~~l~~~~~---~t~ii~i~h~~~~~~~l~D 376 (521)
.++.||+||+|| ++||++|+.+|++++||||++++|..... .+.+++.+.. +.++++++|+.. ....||
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~-~~~~~d 190 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE-LVDAAD 190 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH-HHhhCC
Confidence 345699999996 78999999999999999999999887766 6666654431 344555556654 456899
Q ss_pred eEEEEeC
Q 044321 377 DIILISN 383 (521)
Q Consensus 377 ~VivL~~ 383 (521)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=170.45 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=152.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceee-ecCCccccCCCCHHHHHHHHHH-hccCch
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCD-ISQHDVHIGEMTVRETLAFSAR-CQGVGS 245 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~-v~q~d~~~~~lTV~E~l~f~~~-~~~~~~ 245 (521)
.+..+++++||+++..||+-+++|.||||||-..|+|+|..+.+-.+.+. ..-+++-+-.+|.++--....+ ...+++
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 35567999999999999999999999999999999999976544221110 0011222223343332111100 000110
Q ss_pred hh----HHHHHHHHHHHhcCCCCCCChHH-HHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 246 RY----EMLAELTRREKAAGIKPDPDIDV-FMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 246 ~~----~~~~~l~~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
.. +-...+- +....+ .|.....- ..+.. +. .+.++-++|..+|+.+..|-+- .++..|.-||-|+|.
T Consensus 97 eP~sCLDPS~~iG-~QlIq~-IP~wTfkgrWWq~F---~W-rKrrAIeLLHrVGIKdHkDIM~--SYP~ElTeGE~QKVM 168 (330)
T COG4170 97 EPQSCLDPSERVG-RQLIQN-IPAWTYKGRWWQRF---GW-RKRRAIELLHRVGIKDHKDIMR--SYPYELTEGECQKVM 168 (330)
T ss_pred CchhhcChHHHHH-HHHHhh-CccccccchHhhhh---ch-hHHHHHHHHHHhccccHHHHHH--hCcchhccCcceeee
Confidence 00 0000000 000001 11111100 00000 01 1234556899999998877653 467789999999999
Q ss_pred HHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 321 TGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||.|++..|++||.||||++ +..++.+.|..+-+ .++|+|+.++|+...+.+.||+|-||.=|+-++.++.++++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ-n~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ-NSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc-cCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHh
Confidence 99999999999999999995 55667776666543 46888888999999999999999999999999999999985
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHh
Q 044321 397 EFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 397 ~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+ .|.+..++..+..+
T Consensus 248 ~--------~PhHPYTqALi~a~ 262 (330)
T COG4170 248 T--------MPHHPYTQALIRAI 262 (330)
T ss_pred c--------CCCCchHHHHHHhC
Confidence 3 56666666655443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=186.88 Aligned_cols=161 Identities=25% Similarity=0.234 Sum_probs=117.2
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----eeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
.+.|..||+++++||||-||||+.++|+|.+.|+.+. ..|=+|.-.--...||.+.+.-..+-....+
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s------- 433 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS------- 433 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccc-------
Confidence 3455567899999999999999999999999987431 2455555444467899986654322110000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEE
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iL 332 (521)
-...++++-|.|+...+..|. +|||||.|||+||.+|..+++++
T Consensus 434 -------------------------------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlY 477 (591)
T COG1245 434 -------------------------------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLY 477 (591)
T ss_pred -------------------------------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEE
Confidence 012346777888888887775 49999999999999999999999
Q ss_pred EEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 333 FMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 333 lLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+||||++.+|. .+.+.|++++...+.|. +++-|+...+--++|++++..
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta-~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA-LVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhcCceE-EEEecceehhhhhhceEEEEe
Confidence 99999997654 35677788776544454 445677766667889988875
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=180.52 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=127.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHH-HHHHhccCchhhHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA-FSARCQGVGSRYEMLA 251 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~-f~~~~~~~~~~~~~~~ 251 (521)
=+..||++|+.||++-|+|.||||||||+++|+|++.|+ .+.+++.++++- .-+..+.-. |++ +++.+.+++
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~--~e~ledYR~LfSa----vFsDyhLF~ 410 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVS--AEQLEDYRKLFSA----VFSDYHLFD 410 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCC--CCCHHHHHHHHHH----HhhhHhhhH
Confidence 356799999999999999999999999999999999987 455677665543 333333321 222 233343333
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+-..+ +....+.++..|+.+.|.+...-+=|+-..-.||.|||||+++--||+-+.+|
T Consensus 411 ~ll~~e---------------------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 411 QLLGPE---------------------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred hhhCCc---------------------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 322111 11112345667777777654322222222335999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 332 LFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
+++||=-+-.|+.+.+. +.-.+++.|+|++.++ |+ +.-+..+||++.+.+|++++.-+
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs-HD-d~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS-HD-DHYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-cC-chhhhhHHHHHHHhcCceeeccc
Confidence 99999777666555444 4445565566666554 54 34678999999999999997643
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-20 Score=178.73 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
-++++++.+.+| +++|+|||||||||||.+|...+....... .......+.+..+.....+.-.++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~---------~r~~~~~~~i~~~~~~~~i~~~~~---- 76 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDT---------NRGSSLKDLIKDGESSAKITVTLK---- 76 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccc---------cccccHHHHhhCCCCeEEEEEEEE----
Confidence 346788888887 889999999999999999975332211000 000011222211100000000000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH----cCC
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML----VGP 328 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL----v~~ 328 (521)
..++.+.+. .......++++|+. .+..++.+ +.||||||||++||+|| +.+
T Consensus 77 ------~~~~~~~~~-----------~~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~ 131 (198)
T cd03276 77 ------NQGLDANPL-----------CVLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVME 131 (198)
T ss_pred ------cCCccCCcC-----------CHHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccC
Confidence 000000000 00001234455554 44455444 46999999999999999 699
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc-----CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL-----EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~-----~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|+++||||||+++|......+.+++.+. ++++|++++|+..++.++ |+|.+|..|+
T Consensus 132 p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 132 SPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 9999999999998887665555544332 345677777888888775 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=182.83 Aligned_cols=180 Identities=24% Similarity=0.297 Sum_probs=127.8
Q ss_pred hhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCc--cccCC
Q 044321 158 LNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHD--VHIGE 227 (521)
Q Consensus 158 l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d--~~~~~ 227 (521)
++.-++...+.+.++++++++|-|.--..++|+||||.||||||++|.|.+.|..+. .++..|+. .+-.+
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~E 666 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGE 666 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccc
Confidence 333344456667889999999999999999999999999999999999999986321 13333321 11222
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
-|..|.|.-... + | ...+...|-.|||...++|.-
T Consensus 667 etp~EyLqr~FN---l--------------------p------------------yq~ARK~LG~fGL~sHAHTik---- 701 (807)
T KOG0066|consen 667 ETPVEYLQRKFN---L--------------------P------------------YQEARKQLGTFGLASHAHTIK---- 701 (807)
T ss_pred cCHHHHHHHhcC---C--------------------C------------------hHHHHHHhhhhhhhhccceEe----
Confidence 333333221100 0 0 001233577899988888863
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..||||||-||++|..-++.|+||||||||+.++.+.++.|.+.+.++++.+||++|. ...+.+.--.++|+.+
T Consensus 702 ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHD-eRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 702 IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHD-ERLIVETDCNLWVVEN 776 (807)
T ss_pred eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecc-cceeeecCceEEEEcc
Confidence 45799999999999999999999999999999999999999999999888888776644 3333333334555544
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=183.33 Aligned_cols=178 Identities=19% Similarity=0.237 Sum_probs=126.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------CceeeecCCccccCCCCHHHHHHHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------KNRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------~~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
+..+++|+||.|+.|+-++|.||||||||+||++|+|+.+... +.--|+||.+ .++-.|.|+-+-|..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP-Ymt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP-YMTLGTLRDQVIYPL 525 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC-CccccchhheeeccC
Confidence 3468899999999999999999999999999999999876321 1236788875 455568888877753
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc------cccccccCccCCCCC
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV------CADTMVGDEILRGIS 312 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~------~~dt~vg~~~~r~LS 312 (521)
...... ....+. ..+..+|+.++|.| ..|+.+--+....||
T Consensus 526 ~~~~~~------------------~~~~~d---------------~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 526 KAEDMD------------------SKSASD---------------EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLS 572 (659)
T ss_pred cccccc------------------ccCCCH---------------HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcC
Confidence 211000 000111 11222344444433 233333233445799
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+||+||++.||.+...|++-||||.|++++.++-..+.+.+++. +++.|++.|. .....+=|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-giT~iSVgHR-kSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-GITFISVGHR-KSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-CCeEEEeccH-HHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999988864 5666666664 456666788888874
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-19 Score=171.03 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHH-HHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR-QFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~-~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
..+|+||||++.|++++ .+|+++|+|||++++|......+. .++... .+.++++++|+ .++..+||++++|.+|+
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENAS 167 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEE
Confidence 45999999999999885 799999999999988876554442 222211 24455556665 57789999999999999
Q ss_pred EEEec
Q 044321 386 IVYQG 390 (521)
Q Consensus 386 iv~~G 390 (521)
+++.+
T Consensus 168 l~~~~ 172 (200)
T cd03280 168 MEFDP 172 (200)
T ss_pred EEEec
Confidence 98874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=179.75 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=144.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCc---cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHD---VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d---~~~~ 226 (521)
...+++|||+|+.||+++|.|-.|-|-+.|+.+|+|+.++... +-+|||.+. -+.+
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~ 350 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL 350 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence 5689999999999999999999999999999999998754320 126676654 2467
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-cccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-DTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~ 305 (521)
.+|+.||+.+...-..++.+.. --+. .+....+..+++.|+...+. ++
T Consensus 351 ~~sl~eN~vL~~~~~~~~~~~g----------------~l~~-----------~~i~~~a~~li~~fdVr~~~~~~---- 399 (501)
T COG3845 351 DLSLAENLVLGRHDKKPFSRGG----------------FLDR-----------RAIRKFARELIEEFDVRAPSPDA---- 399 (501)
T ss_pred CccHHHHhhhhhcccccccccc----------------ccCH-----------HHHHHHHHHHHHHcCccCCCCCc----
Confidence 8899999877543211111100 0011 12334566788888886322 22
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+.||||++||+-+||.|..+|++|++.+||.++|.-..+.+++.+.+. .++.|+.++.+.++++.+||+|.+|++
T Consensus 400 -~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 400 -PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYE 478 (501)
T ss_pred -chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeC
Confidence 34569999999999999999999999999999988887777766654332 567777788999999999999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|+++...++++.
T Consensus 479 Gri~~~~~~~~~ 490 (501)
T COG3845 479 GRIVGIVPPEEA 490 (501)
T ss_pred CceecccccccC
Confidence 999988877653
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-19 Score=175.13 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 309 RGISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..||||||||++||++++. +|+++||||||+++|......+.+++.+. .+.++|+++|+ .++...||++++|.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~-~~~~~~~d~i~~~~ 232 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK-EEFFSKADALVGVY 232 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC-HHHHhhCCeEEEEE
Confidence 6799999999999999986 48999999999999988777776666544 24556666677 56678999999997
Q ss_pred C
Q 044321 383 N 383 (521)
Q Consensus 383 ~ 383 (521)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 4
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=177.74 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=133.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce--------eeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR--------CDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~--------~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.++.++++.+..-...+++|+||+||||++|++.|.+.|..+.. +|..|+.+-+..+.|.+- .+..++
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~--- 453 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAV-DFMEKS--- 453 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHH-HHHHHh---
Confidence 58889999999999999999999999999999999888764322 555565444333333321 111111
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.| +. .++.+..-+..|||+.-. ....+.+||||||-||++|.
T Consensus 454 -------------------~p--------------G~-~~ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 454 -------------------FP--------------GK-TEEEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAA 495 (582)
T ss_pred -------------------CC--------------CC-CHHHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHH
Confidence 11 11 112234467889997532 11235679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE-ecCH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY-QGPR 392 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~-~G~~ 392 (521)
+...+|.+|+|||||+.+|.+.+..|-+.++..++.+|++ +|+.+.+..+|+.+.+.++|++.- .|..
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~V-SHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLV-SHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEE-ECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999988887777765 578888999999999999999963 3444
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=155.09 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=123.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccC-CCCHHHHHHH-HH-HhccCchhhH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIG-EMTVRETLAF-SA-RCQGVGSRYE 248 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~-~lTV~E~l~f-~~-~~~~~~~~~~ 248 (521)
+++-|+|++++.|..++++|.||||||||||+|+|..--.. ....|...+.+-. .++---++.| +. .+..++...+
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~-~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~age 106 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG-GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE 106 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC-CeEEEcCcCccccccccccCceeEeccccccccccccc
Confidence 68999999999999999999999999999999999642111 1111211111100 0000000000 00 0000000000
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
+.-..++....-...+.+... .+-+.+++.+.++-.. ..+.+|-|||+||.|+.-|+.+
T Consensus 107 -------------vplq~D~sae~mifgV~g~dp-~Rre~LI~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 107 -------------VPLQGDISAEHMIFGVGGDDP-ERREKLIDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred -------------ccccccccHHHHHhhccCCCh-hHhhhhhhheeccceE-------EEeeccccchhhhHHHHhcccc
Confidence 000001111111111222222 3456677777775422 1245999999999999999999
Q ss_pred CcEEEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHH
Q 044321 329 AQALFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~ 398 (521)
=++|+|||.|--+|.-. .+.|+.-..+ .+.+|+..||.-+-......+++.|+.|+++..-+.+.+.++
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~-RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQ-RGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhh-cCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhh
Confidence 99999999999766544 4444444443 466777788888888889999999999999986666666543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=170.82 Aligned_cols=179 Identities=23% Similarity=0.291 Sum_probs=112.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHH------HHHHHHHhc-c---CchhhHH
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE------TLAFSARCQ-G---VGSRYEM 249 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E------~l~f~~~~~-~---~~~~~~~ 249 (521)
+.++|++++|+||||-||||-+|+|+|.+.|++... +.+. ..-+|-+ .-.|...+. + +-.+.+.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~----~~pp--~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY 169 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY----EDPP--SWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY 169 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC----CCCC--CHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence 357999999999999999999999999999875321 0000 0001111 001111100 0 0000000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
...+.+.-+ .......+... ..-..+++.+.|+|....|.-|.+ |||||-|||+||.++++++
T Consensus 170 Vd~iPk~~K-------G~v~elLk~~d-----e~g~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 170 VDLIPKVVK-------GKVGELLKKVD-----ERGKFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHHHHHhc-------chHHHHHHhhh-----hcCcHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccC
Confidence 011111000 01111111111 122568899999999998887764 9999999999999999999
Q ss_pred cEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 330 QALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 330 ~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+++|+||||+.+|. ...+.++++++. +..++++.|+....--++|-|.++..
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~--~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAED--GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhcc--CCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999997654 456667776642 45666678887666667888888864
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=175.54 Aligned_cols=162 Identities=22% Similarity=0.307 Sum_probs=109.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--------CCCceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--------SLKNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--------~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
..++..++|.|+||-.++|+||||||||+|+++|+|+.+- .....-|+||.+. +...|.++.+-|...
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPY-ms~gtlRDQIIYPdS--- 570 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPY-MSGGTLRDQIIYPDS--- 570 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCc-cCcCcccceeecCCc---
Confidence 3588999999999999999999999999999999997652 2223478888754 335666766554311
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC----ccCCCCChHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD----EILRGISGGQRKR 318 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~----~~~r~LSGGqrQR 318 (521)
.. ++.+ .+ .++.+ ...+|..+.|++.+..-.|= +.-.-||||||||
T Consensus 571 ---~e----~~~~----kg-~~d~d------------------L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 571 ---SE----QMKR----KG-YTDQD------------------LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred ---HH----HHHh----cC-CCHHH------------------HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 00 0100 01 11111 12233333333322221111 1112499999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecC
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQP 367 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~ 367 (521)
+++||++.++|+.-+|||.|++...++-..+.+.++..+ ..+++++|.
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~g-i~llsithr 668 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAG-ISLLSITHR 668 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcC-ceEEEeecC
Confidence 999999999999999999999999999999999887654 555555554
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=168.62 Aligned_cols=212 Identities=23% Similarity=0.235 Sum_probs=136.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC---CCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhh
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL---DSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRY 247 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l---~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~ 247 (521)
+.++.|.|+.|-.|+.++|+||||-||||||+.|+.+- +|.. ...++.|+ +.-...|.-+++.-+-. .+.
T Consensus 277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI-DvLlCEQE-vvad~t~Ai~tvl~aD~-----kRl 349 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI-DVLLCEQE-VVADSTSAIDTVLKADK-----KRL 349 (807)
T ss_pred ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC-ceEeeeee-eeecCcHHHHHHHHhhH-----HHH
Confidence 45888999999999999999999999999999999852 3321 11333333 22223333333322210 111
Q ss_pred HHHHHHHHHHHhcCCCCCCChH-----HHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 248 EMLAELTRREKAAGIKPDPDID-----VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 248 ~~~~~l~~~e~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.++.+-.+.+.... ..+.... .+.+..+.....++.++..||.-||++.-.. +++...+|||-|-||++|
T Consensus 350 ~lLeee~~L~~q~e-~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 350 ALLEEEAKLMSQIE-EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred HHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHH
Confidence 22221111111000 0011111 1111112223334556778999999876443 233446999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE-ecCHhHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY-QGPREYV 395 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~-~G~~~~v 395 (521)
|||...|-+|+|||||+.++...+-+|.++++....|.+ +++|+...+-..|..||-|++-++-| .|...-+
T Consensus 425 RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLL-IVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLL-IVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF 497 (807)
T ss_pred HHHhcCceeeeecCCccccccceeeehhhHHhhhhheeE-EEecccchHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 999999999999999999999999999988865445544 45677788889999999999988854 4665433
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=161.15 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=105.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhc-cCchhhH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQ-GVGSRYE 248 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~-~~~~~~~ 248 (521)
...+.+|+++.+.+|++++|.||||+||||||+.++=. .+ -+++. .++...
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~-------------------la~~g~~vpa~~- 67 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL-------------------MAQIGCFVPCDS- 67 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH-------------------HHHhCCCcCccc-
Confidence 34689999999999999999999999999999998721 01 11111 000000
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH--c
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML--V 326 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL--v 326 (521)
.. -...+.++..+|+.+.. .+++|.|+++++.+++++ +
T Consensus 68 -----------~~---------------------~~~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~ 107 (222)
T cd03285 68 -----------AD---------------------IPIVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSA 107 (222)
T ss_pred -----------EE---------------------EeccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhC
Confidence 00 00123455566665322 246999999999999999 8
Q ss_pred CCCcEEEEeCC---ChhhHHHHHHH--HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 327 GPAQALFMDEI---SNSTTFQIVNS--LRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 327 ~~P~iLlLDEP---Ts~~~~~i~~~--L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
.+|+++||||| |+++|...... +..+.+..+.+ ++++||. .++.++||++..+.+|++.+.+.
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~-vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCF-CLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCe-EEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999999999 77777654332 23333322444 5555664 78899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-17 Score=158.51 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=58.4
Q ss_pred cCCCCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcC--
Q 044321 307 ILRGISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFD-- 376 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D-- 376 (521)
.+..||||||||+.++.+| +.+|+++|+||||+++|......+.+++... +.+++++++|+.....+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 3456999999999877554 5899999999999988877666665554332 23456666676666777776
Q ss_pred eEEEEeCCE
Q 044321 377 DIILISNGH 385 (521)
Q Consensus 377 ~VivL~~G~ 385 (521)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=171.65 Aligned_cols=117 Identities=24% Similarity=0.341 Sum_probs=87.2
Q ss_pred HHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEE
Q 044321 289 ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILIS 363 (521)
Q Consensus 289 iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~ 363 (521)
.|..+||.-. ..| +..-+|||||.|||-+|..|.... .+++|||||+++-+.-++.|.+.++.+ ++-+||+
T Consensus 805 tL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViV 880 (935)
T COG0178 805 TLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV 880 (935)
T ss_pred HHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5667888632 234 345579999999999999999877 899999999987766555555555443 3455555
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+.|++ .+...||.|+=| ..|+||+.|+|+++.+ +| ...++.||..+
T Consensus 881 IEHNL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~~ 932 (935)
T COG0178 881 IEHNL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKKY 932 (935)
T ss_pred Eeccc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHHH
Confidence 67776 577899999999 4589999999999964 45 55667777553
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=156.77 Aligned_cols=246 Identities=21% Similarity=0.324 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++++..++|+++.-.--....+.+ .|. +. .+.-.-.+.|.+++-........+.+|. .+..++..+..
T Consensus 321 teEa~r~i~rf~~~d~~A~~h~L~~--pRy-r~-ve~L~~p~~~~~v~k~faS~ld~~~lp~-------e~~~IleSFGv 389 (593)
T COG2401 321 TEEAKRYIDRFVGEDPMAYPHLLLA--PRY-RM-VEKLEGPIKFKNVTKTFASELDIKGLPN-------EFQDILESFGV 389 (593)
T ss_pred hHHHHHHHHHHhccCccccccceec--ccc-cc-ccccCCccccceeeeeeeeeeecccCCh-------HHHHHHHHhcc
Confidence 4667777788776432222211111 111 11 1111224667777665443333333331 22223333332
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--------CCCC--------ceeeecCC-ccccC
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--------SSLK--------NRCDISQH-DVHIG 226 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--------~~~~--------~~~~v~q~-d~~~~ 226 (521)
..+.....+|+|||+.|+||++++|+|+|||||||||++|+|... |+.+ .++.++.. +.-|.
T Consensus 390 -~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~ 468 (593)
T COG2401 390 -RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG 468 (593)
T ss_pred -hheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC
Confidence 233455689999999999999999999999999999999999642 2211 01112211 11122
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
+-|+.|.+.- ... |+ ....++|+..||.+.. .-..
T Consensus 469 ~~tilehl~s-------------------------~tG--D~---------------~~AveILnraGlsDAv---lyRr 503 (593)
T COG2401 469 EVTILEHLRS-------------------------KTG--DL---------------NAAVEILNRAGLSDAV---LYRR 503 (593)
T ss_pred chhHHHHHhh-------------------------ccC--ch---------------hHHHHHHHhhccchhh---hhhc
Confidence 2222222110 000 00 1234578888887532 1113
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhh-cCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDL-FDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l-~D~VivL 381 (521)
..+.||-|||.|+.||.++...|.+++.||-.+. ++..+.+.|.+++.+.+.|.++++ |+.+..-.+ =|+++++
T Consensus 504 ~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvT-hrpEv~~AL~PD~li~v 582 (593)
T COG2401 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT-HRPEVGNALRPDTLILV 582 (593)
T ss_pred cHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHhccCCceeEEe
Confidence 3456999999999999999999999999998774 455667777777776565655554 544455556 5888888
Q ss_pred eCCEEE
Q 044321 382 SNGHIV 387 (521)
Q Consensus 382 ~~G~iv 387 (521)
.-|.+.
T Consensus 583 gYg~v~ 588 (593)
T COG2401 583 GYGKVP 588 (593)
T ss_pred eccccc
Confidence 777654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-16 Score=147.04 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 311 ISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 311 LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||||||||++||++|+ .+|+++++|||++++|....+.+.+++.+. .+.++++++|+.. ....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~-~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE-MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999988877666665555432 2345566667654 5578999999974
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=178.51 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=79.9
Q ss_pred HHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC---CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEE
Q 044321 287 DYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP---AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTIL 361 (521)
Q Consensus 287 ~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~---P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~i 361 (521)
-..|..+||.... .| +...+|||||.||+-||..|..+ +.+++|||||+++...-++.|.++++.+ .+-+|
T Consensus 1680 L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tv 1755 (1809)
T PRK00635 1680 LQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV 1755 (1809)
T ss_pred HHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 3467888987532 33 34557999999999999999876 7899999999998877666666665443 23444
Q ss_pred EEEecChhHHHhhcCeEEEEe------CCEEEEecCHhHHHH
Q 044321 362 ISLLQPAPETYDLFDDIILIS------NGHIVYQGPREYVLE 397 (521)
Q Consensus 362 i~i~h~~~~~~~l~D~VivL~------~G~iv~~G~~~~v~~ 397 (521)
|++.|+. ++...||.|+-|- .|+||+.|+++++..
T Consensus 1756 ivieH~~-~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYIDHDP-ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEeCCH-HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 4456665 5666799999994 589999999999953
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-15 Score=138.64 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 310 GISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+||+||+||+++|++|+. +|+++|+|||+++++......+.+.+.+. +++++++++|+.. ....+|+++.|..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~-~~~~~d~~~~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE-LAELADKLIHIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHhhhhEEEEEE
Confidence 499999999999999986 78999999999988876555554443322 2455566667654 4567999999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=149.64 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 310 GISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||+||+++|++++. +|+++|+||||++++......+.+++... .+.++++++|+.. +..+||++++|.+|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH-HHHhcCcEEEEEEe
Confidence 499999999999986553 99999999999999888777776666543 3345555666654 66899999999876
Q ss_pred E
Q 044321 385 H 385 (521)
Q Consensus 385 ~ 385 (521)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-15 Score=141.76 Aligned_cols=139 Identities=15% Similarity=0.030 Sum_probs=88.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC----C-CCCceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----S-SLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~----~-~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..+++|+++.. |++++|+||||||||||||+|+|... . ......++.|.+.+++.+|+.|++.++...
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~----- 86 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISY----- 86 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccCh-----
Confidence 46888887776 79999999999999999999998541 0 001113455667788899999988764311
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
+ .. +. ..+..+++.+++
T Consensus 87 -~-------~~------------------------e~-~~~~~iL~~~~~------------------------------ 103 (199)
T cd03283 87 -F-------YA------------------------EL-RRLKEIVEKAKK------------------------------ 103 (199)
T ss_pred -H-------HH------------------------HH-HHHHHHHHhccC------------------------------
Confidence 0 00 00 123445554431
Q ss_pred cCCCcEEEEeCCChhhHHHHHHH-----HHHHHHHcCCeEEEEEecChhHHHhh--cCeEEEEe
Q 044321 326 VGPAQALFMDEISNSTTFQIVNS-----LRQFIHILEGTILISLLQPAPETYDL--FDDIILIS 382 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~-----L~~l~~~~~~t~ii~i~h~~~~~~~l--~D~VivL~ 382 (521)
.+|+++|+|||+++++...... +..+. + .++++++++|+...+..+ .++|..++
T Consensus 104 -~~p~llllDEp~~glD~~~~~~l~~~ll~~l~-~-~~~tiiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 104 -GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK-N-KNTIGIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred -CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH-H-CCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence 6899999999999887654432 23332 2 345666667776665544 45555543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-15 Score=142.42 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-H---HHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-R---QFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~---~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|++++| +..+.+++.+|+++|+|||+++++......+ . +.+.. .++++++++|+. ++...++++..+..|
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~-~~~~~~~~~~~l~~~ 166 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFH-ELADLPEQVPGVKNL 166 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChH-HHHHHhhcCCCeEEE
Confidence 347776665 6666778899999999999998887544433 2 22222 245556666764 667789999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++...+...++
T Consensus 167 ~~~~~~~~~~~ 177 (202)
T cd03243 167 HMEELITTGGL 177 (202)
T ss_pred EEEEEecCCee
Confidence 99988865443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=142.63 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhc---
Q 044321 308 LRGISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF--- 375 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~--- 375 (521)
..-+|+||||+++||++|+ .+|++++|||||+++|....+.+.+.+.... .+++++| +.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~-~~~~~~~~~~~~ 258 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTT-DLADFDALWLRR 258 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeC-CchhccchhccC
Confidence 3348999999999999985 7999999999999999999998888876544 4555544 445666777
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
++++.|++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=137.02 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=86.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
+..+.+|+++.+++|++++|+||||+|||||+++|++..--. ....++ +.....+++.+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la-~~G~~v---pa~~~~l~~~d~I--------------- 75 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA-QIGCFV---PAEYATLPIFNRL--------------- 75 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH-HcCCCc---chhhcCccChhhe---------------
Confidence 347999999999999999999999999999999998742100 001122 1122233333333
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
+..++..+..+. ..+.+|+|++|. ..+.+++.+|
T Consensus 76 ----------------------------------------~~~~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~ 109 (204)
T cd03282 76 ----------------------------------------LSRLSNDDSMER-----NLSTFASEMSET-AYILDYADGD 109 (204)
T ss_pred ----------------------------------------eEecCCccccch-----hhhHHHHHHHHH-HHHHHhcCCC
Confidence 222333322222 224599999975 5556688999
Q ss_pred cEEEEeCCChhhHHHH-----HHHHHHHHHHcCCeEEEEEecChhHHHhhc
Q 044321 330 QALFMDEISNSTTFQI-----VNSLRQFIHILEGTILISLLQPAPETYDLF 375 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i-----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~ 375 (521)
+++|||||+++++... ...+..+.. . +++++++||..+.+..+.
T Consensus 110 ~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~-~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 110 SLVLIDELGRGTSSADGFAISLAILECLIK-K-ESTVFFATHFRDIAAILG 158 (204)
T ss_pred cEEEeccccCCCCHHHHHHHHHHHHHHHHh-c-CCEEEEECChHHHHHHhh
Confidence 9999999988775532 233333332 3 455555677765554433
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-14 Score=161.20 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=85.2
Q ss_pred hHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CC
Q 044321 284 VITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EG 358 (521)
Q Consensus 284 ~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~ 358 (521)
.+++ .|+.+||.+. .|+.+. .|||||+|||.||++|+.+| ++|||||||++++....+.|.++++++ .+
T Consensus 468 ~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G 541 (943)
T PRK00349 468 ERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLG 541 (943)
T ss_pred HHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCC
Confidence 3444 6888999865 676665 59999999999999999997 999999999998887766666665443 34
Q ss_pred eEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 359 TILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 359 t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
.+||+++|+..++. .||+|++| .+|++++.|+++++.
T Consensus 542 ~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 542 NTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 55666777777664 69999999 999999999998874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=158.27 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=80.9
Q ss_pred HHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEE
Q 044321 289 ILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILIS 363 (521)
Q Consensus 289 iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~ 363 (521)
.|..+||... .++.+ .+|||||+|||.||++|+.+| ++|||||||++++....+.|.++++++ .+.+||+
T Consensus 470 ~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred hHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3677888754 45544 469999999999999999986 899999999998887666666655443 2455566
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
++|+...+ ..||+|++| ++|+|++.|+++++.
T Consensus 545 VeHd~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 545 VEHDEETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EECCHHHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 67776665 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=141.54 Aligned_cols=172 Identities=26% Similarity=0.299 Sum_probs=116.1
Q ss_pred CCCcceeeeeeEEEEeCCc-----EEEEEcCCCChHHHHHHHHhCCCCCCCCce------eeecCCccccCCCCHHHHHH
Q 044321 167 RKKHLTILKDVSGIIRPGR-----MTLLLGPPGSVKTTLLLALAGKLDSSLKNR------CDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge-----~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~------~~v~q~d~~~~~lTV~E~l~ 235 (521)
+.+.+.-+-+..+.|+.|+ ++..+|.||-|||||+++|+|.++|+.... .|-+|.-.--.+.||++.+.
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHH
Confidence 3444567888888888875 789999999999999999999998875422 45556544445667777543
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
--.+- + ++ ..+.+..+++-|.+++..|.-|. +|||||
T Consensus 425 ~kIr~----------------a-------------y~---------~pqF~~dvmkpL~ie~i~dqevq-----~lSgge 461 (592)
T KOG0063|consen 425 TKIRD----------------A-------------YM---------HPQFVNDVMKPLQIENIIDQEVQ-----GLSGGE 461 (592)
T ss_pred HHhHh----------------h-------------hc---------CHHHHHhhhhhhhHHHHHhHHhh-----cCCchh
Confidence 21110 0 00 11234456666677766665554 699999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||++|.+|-.++++++.|||++-+|.+ ..+.+++++-..+.|..+ +.|+.--.--++|+|++..
T Consensus 462 lQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafv-VEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 462 LQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFV-VEHDFIMATYLADRVIVFE 531 (592)
T ss_pred hHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhh-hhhHHHHHHhhcceeEEEe
Confidence 99999999999999999999999954432 233445554333455555 4565443445789988764
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=133.97 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=89.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC-------ccccCCCCHHHHHHHHHHhccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH-------DVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~-------d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
..+.+|+++.+.+ ++++|+|||||||||||++|++..-.. ....+++.. +..++.+++.++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~-~~g~~vp~~~~~i~~~~~i~~~~~~~~~---------- 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA-QIGSFVPASKAEIGVVDRIFTRIGASDD---------- 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh-ccCCeeccccceecceeeEeccCCchhh----------
Confidence 4689999999988 999999999999999999998632100 000111110 111222222222
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH----H
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR----V 319 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR----v 319 (521)
+|+|+.+. +
T Consensus 86 -------------------------------------------------------------------ls~g~s~f~~e~~ 98 (216)
T cd03284 86 -------------------------------------------------------------------LAGGRSTFMVEMV 98 (216)
T ss_pred -------------------------------------------------------------------hccCcchHHHHHH
Confidence 44444332 2
Q ss_pred HHHHHH--cCCCcEEEEeCC---ChhhHHHH-HHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 320 TTGEML--VGPAQALFMDEI---SNSTTFQI-VNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 320 aIAraL--v~~P~iLlLDEP---Ts~~~~~i-~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
.+++++ +.+|+++||||| |++++... ...+.+.+.+. +.++| ++||. .++.+++|++..+.+|++...+..
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi-~~TH~-~~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTL-FATHY-HELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEE-EEeCc-HHHHHHhhcCCCeEEEEEEEEeeC
Confidence 355444 579999999999 77666532 23333333333 44554 45666 477888998888888998877766
Q ss_pred hHH
Q 044321 393 EYV 395 (521)
Q Consensus 393 ~~v 395 (521)
+++
T Consensus 177 ~~l 179 (216)
T cd03284 177 GGV 179 (216)
T ss_pred CeE
Confidence 655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.6e-13 Score=126.19 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-HHH---HHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-RQF---IHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~~l---~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|+|++|...+.. .+.+|+++|+|||+++++......+ ..+ ..+..+.+++++||.. ++.+++|..--+..+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~-~l~~~~~~~~~v~~~ 137 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH-ELTKLADEHPGVRNL 137 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH-HHHHHhhcCccceEE
Confidence 358888886433333 2459999999999998877532222 222 2222234455556665 577788754444444
Q ss_pred EEEE
Q 044321 385 HIVY 388 (521)
Q Consensus 385 ~iv~ 388 (521)
++..
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=119.28 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred cCCCCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhc--
Q 044321 307 ILRGISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF-- 375 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~-- 375 (521)
....+|+||+|++.||..|+ .+|+||+||||++.+|..-.+.|.+++...+..+++++ |+.+.+...+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~-~~~~~~~~~~~~ 348 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITT-TDLEDLADLLEN 348 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEc-CChhhhhhhhcc
Confidence 34569999999999999885 79999999999999999988888887764444555554 4445555554
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
++++.|.+|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 47999999987
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=116.95 Aligned_cols=27 Identities=44% Similarity=0.525 Sum_probs=24.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
.-++|+||||||||||+++|+|.+.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 578999999999999999999998875
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=109.99 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHcC-CeEEEEEecChhHHHhhcCeEEEEe
Q 044321 310 GISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHILE-GTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 310 ~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~-~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+|||||.+++||-.| ..+.+++|||||.+++|..-...+.+++.+.. .+-+|+++|. +.++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~-~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN-PEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S--HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 4999999999999554 36889999999999999998888888877653 3445555555 57888999887764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=120.51 Aligned_cols=179 Identities=22% Similarity=0.229 Sum_probs=105.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHH-HH--HHhccCchhhHHHHHHHHHH
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA-FS--ARCQGVGSRYEMLAELTRRE 257 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~-f~--~~~~~~~~~~~~~~~l~~~e 257 (521)
-.||++.+++|-||-||||-|++|+|.++|+.+. |... ..++++. +. ..++..+.+. ....
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~--~~~p--------p~w~~il~~frgselq~yftk~------le~~ 160 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR--YDNP--------PDWQEILTYFRGSELQNYFTKI------LEDN 160 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCC--CCCC--------cchHHHhhhhhhHHHhhhhhhh------cccc
Confidence 3589999999999999999999999999987432 2111 1111111 10 0111110000 0000
Q ss_pred HhcCCCCCCChHHHHHHHh------hhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 258 KAAGIKPDPDIDVFMKAAA------TEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 258 ~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
...-++|. .++.+-++.. +.....+...+++++.+.|.+..+.-+. .|||||-||.+||.+.+..+++
T Consensus 161 lk~~~kpQ-yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~adv 234 (592)
T KOG0063|consen 161 LKAIIKPQ-YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADV 234 (592)
T ss_pred ccCcCChH-HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcce
Confidence 00000000 1111111111 0111112234567788888887776665 4999999999999999999999
Q ss_pred EEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 332 LFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 332 LlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.++|||++.+|..- ...++.++. ...-||++.|+....--+.|-|.+|..
T Consensus 235 yMFDEpSsYLDVKQRLkaA~~IRsl~~--p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 235 YMFDEPSSYLDVKQRLKAAITIRSLIN--PDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred eEecCCcccchHHHhhhHHHHHHHhhC--CCCeEEEEEeechHHHhhhcceeEEec
Confidence 99999999776543 334444442 234555666776665567888888864
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=113.76 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----H-HHHHHHHHHH-cCCeEEEEEecChhHHHhh
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----I-VNSLRQFIHI-LEGTILISLLQPAPETYDL 374 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i-~~~L~~l~~~-~~~t~ii~i~h~~~~~~~l 374 (521)
.-+-||++++++++.+|+++|+|||+++++.. + ...++.+.+. .++.++++++|+.+.+...
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 35679999999999999999999999988753 2 2344444332 1234566677776555443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-10 Score=133.44 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-HHH---HHHcCCeEEEEEecChh
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-RQF---IHILEGTILISLLQPAP 369 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~~l---~~~~~~t~ii~i~h~~~ 369 (521)
..+|+|+++++.|++++ .+|+++|||||+++++......| ..+ +.. .++.++++||..+
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 46999999999998876 78999999999998876554444 222 222 3444555566543
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-11 Score=111.87 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCC--ChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEI--SNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEP--Ts~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.+||+++-++.+++..+.+|+++++||| +...+....+.+.+++ +.+.++|+++ |. ..+..++|+|..+.+|+|+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~-h~-~~~~~~~~~i~~~~~~~i~ 154 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATL-HR-RSVHPFVQEIKSRPGGRVY 154 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEE-Cc-hhhHHHHHHHhccCCcEEE
Confidence 4999999999999999999999999994 4477788888888887 3455555554 54 3566789999999999997
Q ss_pred Eec
Q 044321 388 YQG 390 (521)
Q Consensus 388 ~~G 390 (521)
+.-
T Consensus 155 ~~~ 157 (174)
T PRK13695 155 ELT 157 (174)
T ss_pred EEc
Confidence 653
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-10 Score=112.03 Aligned_cols=177 Identities=15% Similarity=0.198 Sum_probs=96.0
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-Cce--eeecCCccccCCCCHHHHHHHHHH------hccC-chhhH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-KNR--CDISQHDVHIGEMTVRETLAFSAR------CQGV-GSRYE 248 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-~~~--~~v~q~d~~~~~lTV~E~l~f~~~------~~~~-~~~~~ 248 (521)
+.|..|+.++|+||+|+|||||++.|++.+.... ... .++.++. ..++.+-+.--.. .... ..+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er----~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER----PEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC----CccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 4678999999999999999999999999776531 111 2323331 1244443322100 0000 00000
Q ss_pred HHHHH-HHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH--------HHHH
Q 044321 249 MLAEL-TRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ--------RKRV 319 (521)
Q Consensus 249 ~~~~l-~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq--------rQRv 319 (521)
..... ...+. ....+...-..+|++- .+...+++.++. .++.+|||+ +||+
T Consensus 87 ~~~~~~~~a~~----------------~~~~G~~vll~iDei~---r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~ 146 (249)
T cd01128 87 VAEMVLEKAKR----------------LVEHGKDVVILLDSIT---RLARAYNTVVPP-SGKILSGGVDANALHKPKRFF 146 (249)
T ss_pred HHHHHHHHHHH----------------HHHCCCCEEEEEECHH---Hhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHH
Confidence 00000 00000 0000100001111111 123334454443 445689999 9999
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHH----H-HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTF----Q-IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~----~-i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
++||++..+++|.+| ||+.++. . ++ +..+ ...+.|.|++. |. ......+|.|.+|..|.+
T Consensus 147 ~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls-~~-la~~~~~paI~vl~s~sr 211 (249)
T cd01128 147 GAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLD-RR-LAERRIFPAIDILKSGTR 211 (249)
T ss_pred HHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEc-hH-HhhCCCCCeEEEcCCCCc
Confidence 999999999999999 9986541 1 22 2222 21234555544 43 345678999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-09 Score=110.12 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 310 GISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
-+|+||+|++.+|..|+ ..|++++||||++.+|..-.+.+.+++.... -++|+.++ ..+.+|+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~-q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP-QAIVAGTE----APPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC-cEEEEcCC----CCCCCceEEE
Confidence 38999999999999998 9999999999999999988888877764332 34444443 3468999999
Q ss_pred EeCCEEEEe
Q 044321 381 ISNGHIVYQ 389 (521)
Q Consensus 381 L~~G~iv~~ 389 (521)
+.+|++.-.
T Consensus 338 ~~~~~~~~~ 346 (349)
T PRK14079 338 IEAGVFTPE 346 (349)
T ss_pred EeccEecCC
Confidence 999987543
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-10 Score=98.36 Aligned_cols=63 Identities=21% Similarity=0.048 Sum_probs=47.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC-C--C-CC---------CCceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK-L--D-SS---------LKNRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~-l--~-~~---------~~~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
..+|+++++.+++|++++|+||||||||||+++|..- . . .+ ....++++|+ ....|++|||.+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni~~ 77 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNIFL 77 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhcee
Confidence 4689999999999999999999999999999998720 0 0 00 0112455554 556899999987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=100.20 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=48.3
Q ss_pred CCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhH---HHHHHHHHHHH---HHcCCeEEEEEecChhH------
Q 044321 309 RGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTT---FQIVNSLRQFI---HILEGTILISLLQPAPE------ 370 (521)
Q Consensus 309 r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~---~~i~~~L~~l~---~~~~~t~ii~i~h~~~~------ 370 (521)
..+|+|++| ......+...+|+++++|||++.++ ......+.+++ +..+.|++++ +|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v-~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLT-SEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEE-eccccCCCcccC
Confidence 458999998 4445555678999999999999766 43333333332 2235555555 454332
Q ss_pred ---HHhhcCeEEEEe
Q 044321 371 ---TYDLFDDIILIS 382 (521)
Q Consensus 371 ---~~~l~D~VivL~ 382 (521)
+..+||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 567899999987
|
A related protein is found in archaea. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=107.60 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=35.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
..+.+|+++.+.+|++++|+||||+||||||++|++.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999993
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-10 Score=130.66 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH----HHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL----RQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L----~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+|+|+++++.|++++ .+|+++|||||+++++......+ .+.+... +.+++++||+.+.....+++..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH~~el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTHYKELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECChHHHHHHHhcCCCeE-EE
Confidence 46999999999999988 88999999999998886533332 2222333 445555666655555555555443 34
Q ss_pred EEEE
Q 044321 385 HIVY 388 (521)
Q Consensus 385 ~iv~ 388 (521)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 4444
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=120.65 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCChHHHHHHHHHHHHc----------CCCcEEEEeCCC-hhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcC
Q 044321 308 LRGISGGQRKRVTTGEMLV----------GPAQALFMDEIS-NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv----------~~P~iLlLDEPT-s~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D 376 (521)
+..||||||||++||++|+ .+|++||||||| +++|......+.+++....+.+|++++|. +.....||
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~-~~~~~~~d 544 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHK-DHDPQKFD 544 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECc-hhchhhhh
Confidence 4679999999999999887 599999999998 67998888888777766545555556666 45667899
Q ss_pred eEEEEeC-CEE
Q 044321 377 DIILISN-GHI 386 (521)
Q Consensus 377 ~VivL~~-G~i 386 (521)
++++|.+ |+.
T Consensus 545 ~~~~l~~~~~~ 555 (562)
T PHA02562 545 RHLKMEKVGRF 555 (562)
T ss_pred cEEEEEEECCe
Confidence 9999986 554
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.5e-09 Score=101.01 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=35.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
...+-+|+++.+++|++++|.||||+|||||++.+++.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 34789999999999999999999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=107.35 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
...+++++ +.+.+|++++|+|+||+|||||+++|+|...++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 186 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL 186 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 35689999 9999999999999999999999999999887753
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=109.67 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
.++.+|-.+|+++++|||.+. +....++.+. .+...+++++|... +.+..||++.|..|++...|.+.+++
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~~---e~~~~l~a~~--~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRGD---EAFDFIRAVN--TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHhcCCCCeEEEeccCCH---HHHHHHHHHh--cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHHH
Confidence 466788899999999999973 3444454443 34444444555543 66779999999999999888877664
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=98.96 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=31.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHH-HHHHhCCCCCCCCceeeec
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTL-LLALAGKLDSSLKNRCDIS 219 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTL-Lk~LaG~l~~~~~~~~~v~ 219 (521)
+-+++|++++|.|+|||||||| ++.+++...+. ....|+.
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 3489999999999999999999 68988866543 2335554
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-09 Score=115.65 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHHHHHHcCC----CcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 309 RGISGGQRKRVTTGEMLVGP----AQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~----P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+||||+|||+||++++.. |++|||||||++++......+.+++... .+.+||++||... +...||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~-~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQ-VAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhcCeEEEEEE
Confidence 46899999999999999875 6999999999988877666666655543 3455555666654 4469999999987
Q ss_pred CE
Q 044321 384 GH 385 (521)
Q Consensus 384 G~ 385 (521)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=106.55 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=93.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|...++....+.+.+. ..+|.|.+..-
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer-----g~ev~e~~~~~------------ 204 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER-----GREVKDFIRKE------------ 204 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC-----cccHHHHHHHH------------
Confidence 45688885 9999999999999999999999999999887653322233222 24455433211
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc---
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV--- 326 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv--- 326 (521)
+..-|+... ..+ .....-|.|+|+|++.+.+.+
T Consensus 205 ----------------------------------------l~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 205 ----------------------------------------LGEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ----------------------------------------hhhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHH
Confidence 111112110 111 123458999999999998877
Q ss_pred ----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 327 ----GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 327 ----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
+++-+|++|+||...+.. +.+..++.+. +.+..+.+ |+ +.+ ++|.-....|.|...+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s-~l-~~L---~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMES-YM-KKL---LERSGKTQKGSITGIY 304 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeec-cc-hhH---HHHhccCCCcceEEEE
Confidence 899999999999966654 3333222222 23344433 32 333 3444445788875544
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=90.81 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCCh
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISN 339 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs 339 (521)
.+.++.+++..+.+...+|+++++||++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~ 96 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTR 96 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHH
Confidence 45566677888899999999999999996
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=121.50 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=63.5
Q ss_pred ccCCCCChHHHHHHHHHHHHcC----------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHh
Q 044321 306 EILRGISGGQRKRVTTGEMLVG----------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYD 373 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~----------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~ 373 (521)
..+++|||||++||+||+||+. +|++||+||||+++|......+.+.+..+ .+.+|++++|.......
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 3556799999999999999985 79999999999998887655555544332 45566667788888999
Q ss_pred hcCeEEEEeCC
Q 044321 374 LFDDIILISNG 384 (521)
Q Consensus 374 l~D~VivL~~G 384 (521)
++|+|+|+..|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=112.78 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 309 RGISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+||||+|||+||++++. +|+++|||||+++++......+.+++... .+++||++||.. .+..+||+.+++.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~-~~~~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLP-QVAGCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhCCEEEEEec
Confidence 3479999999999999996 68999999999988877777666666544 334555566665 45689999999987
Q ss_pred C
Q 044321 384 G 384 (521)
Q Consensus 384 G 384 (521)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 4
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-09 Score=99.94 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=39.3
Q ss_pred CChH--HHHHHHHHHHHcCCCcEEEEeCCC-----hhhHHHHHHHHHHHHHHc
Q 044321 311 ISGG--QRKRVTTGEMLVGPAQALFMDEIS-----NSTTFQIVNSLRQFIHIL 356 (521)
Q Consensus 311 LSGG--qrQRvaIAraLv~~P~iLlLDEPT-----s~~~~~i~~~L~~l~~~~ 356 (521)
.||+ |++++.||++++.+|+++++|||| +++|......+.++++.+
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 4444 999999999999999999999999 999888888887776643
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-08 Score=94.40 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=43.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHcC--CeEEEEEecC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHILE--GTILISLLQP 367 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~~--~t~ii~i~h~ 367 (521)
...+|.|++|.+.|+.+|...+ .++++|||.+++-+..+..|.+++.... +.-++++||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHS 298 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHS 298 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCcc
Confidence 3457999999999998887766 8999999999888887777777665442 3555656664
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-08 Score=107.25 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=47.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
.+|++||++|++||+++|+|||||||||||+ +|+..|+.+...++.+.+..-+.-+-.+++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR 81 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD 81 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH
Confidence 5899999999999999999999999999999 7777776554566655554434334444443
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.6e-07 Score=103.04 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred HcCCCcEEEEeCCChhh-HHHHHHHHHHHHHHc--CCeEEEEEecChhHHH---------hhcCeEEEEeCCEEEEecCH
Q 044321 325 LVGPAQALFMDEISNST-TFQIVNSLRQFIHIL--EGTILISLLQPAPETY---------DLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~-~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~---------~l~D~VivL~~G~iv~~G~~ 392 (521)
+.++|+++++|||+..+ +....+.+.++++.. .+.++++++|....+. +.||.+++|.+|++...|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36899999999999987 455555555444322 2345555667766654 68999999999998877754
Q ss_pred h
Q 044321 393 E 393 (521)
Q Consensus 393 ~ 393 (521)
+
T Consensus 729 ~ 729 (818)
T PRK13830 729 E 729 (818)
T ss_pred H
Confidence 3
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.5e-08 Score=112.34 Aligned_cols=75 Identities=24% Similarity=0.224 Sum_probs=57.5
Q ss_pred cCCCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeE
Q 044321 307 ILRGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 307 ~~r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~V 378 (521)
.+..|||||++ |+++|++++.+|+++||||||+++|......+..++... .+.+||+++|+. .+...||++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~-~~~~~~d~~ 863 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE-ELKDAADYV 863 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHhCCeE
Confidence 45679999999 555667888999999999999999887766666555432 234555666765 467899999
Q ss_pred EEEe
Q 044321 379 ILIS 382 (521)
Q Consensus 379 ivL~ 382 (521)
++|.
T Consensus 864 ~~l~ 867 (880)
T PRK03918 864 IRVS 867 (880)
T ss_pred EEEE
Confidence 9998
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=110.42 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred cCCCCChHHHHHHHH------HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH----HcCC-eEEEEEecChhHHHhhc
Q 044321 307 ILRGISGGQRKRVTT------GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH----ILEG-TILISLLQPAPETYDLF 375 (521)
Q Consensus 307 ~~r~LSGGqrQRvaI------AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~----~~~~-t~ii~i~h~~~~~~~l~ 375 (521)
.+..|||||++|++| |++|+.+|++++|||||+++|......+.+++. ..++ +++|++||+.. ....|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~-~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE-LLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH-HHHhc
Confidence 466799999999975 589999999999999999998887666665543 2222 35666677765 45799
Q ss_pred CeEEEEe
Q 044321 376 DDIILIS 382 (521)
Q Consensus 376 D~VivL~ 382 (521)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=97.77 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=73.8
Q ss_pred HHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEE
Q 044321 290 LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTT----FQIVNSLRQFIHILEGTILIS 363 (521)
Q Consensus 290 L~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~ 363 (521)
|-.+||+-.. -++...+|||||.||+-+|.-|-..= =+++||||+.++- ..+++.|+++. .+|.|+|++
T Consensus 465 L~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVV 539 (935)
T COG0178 465 LVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVV 539 (935)
T ss_pred HHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEE
Confidence 4457776432 12334569999999999999886542 4799999999753 34566666653 346666665
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHH
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLE 397 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~ 397 (521)
.|+ +++...||+|+=| +.|+||++|++++++.
T Consensus 540 -EHD-edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 540 -EHD-EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred -ecC-HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 455 6788999999998 5699999999999974
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=86.46 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHcC--CCcEEEEeCCChh---hH-HHHHHH---HHHHHHHcCCeEEEEEecChh------HHHhhc
Q 044321 311 ISGGQRKRVTTGEMLVG--PAQALFMDEISNS---TT-FQIVNS---LRQFIHILEGTILISLLQPAP------ETYDLF 375 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~--~P~iLlLDEPTs~---~~-~~i~~~---L~~l~~~~~~t~ii~i~h~~~------~~~~l~ 375 (521)
.|.++++.+.....++. +|+++++||||+. .+ ..+.+. ++.+.. .+.|++++.|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 56788899999988886 9999999999963 22 223333 333232 35555555443321 145667
Q ss_pred CeEEEEeC
Q 044321 376 DDIILISN 383 (521)
Q Consensus 376 D~VivL~~ 383 (521)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777763
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-06 Score=72.58 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChh
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNS 340 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~ 340 (521)
...+++..+..++.+-..+|.++|+||+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~ 90 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSL 90 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 4778888888888888888999999999884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-07 Score=113.01 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=56.8
Q ss_pred cccccCccCCCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-------CCeEEEEEec
Q 044321 300 DTMVGDEILRGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-------EGTILISLLQ 366 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-------~~t~ii~i~h 366 (521)
|+.++ +...||||||| |++||++|+.+|++|+|||||+++|......|...+... .+.+||+++|
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55553 33469999999 999999999999999999999998887766655444322 2456667788
Q ss_pred ChhHHHhhc
Q 044321 367 PAPETYDLF 375 (521)
Q Consensus 367 ~~~~~~~l~ 375 (521)
+...+..+|
T Consensus 1269 d~~~~~~~~ 1277 (1311)
T TIGR00606 1269 DEDFVELLG 1277 (1311)
T ss_pred CHHHHHHHh
Confidence 888887765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-07 Score=108.87 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=58.5
Q ss_pred ccCCCCChHHHHHHHHHHHHcC--------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhc
Q 044321 306 EILRGISGGQRKRVTTGEMLVG--------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~--------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~ 375 (521)
..+.+|||||+++++||++|+. +|++||+||||+++|......+...+..+ .+.+|++++|.......+-
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4567899999999999999995 89999999999998887666666555433 3555666667555555566
Q ss_pred CeEEEEeC
Q 044321 376 DDIILISN 383 (521)
Q Consensus 376 D~VivL~~ 383 (521)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66776654
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-07 Score=97.12 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=52.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--CceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--KNRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.++++.+..+..|.+++|+||||+||||++..|++.+.... ...+.+..+. ...++.|+|.+.+...++
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt---~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS---YRIGGHEQLRIYGKILGV 314 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc---cchhHHHHHHHHHHHhCC
Confidence 35667777888999999999999999999999999764322 1235666653 457899999887765543
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-07 Score=89.66 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=36.8
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+|+++|..+|+++++|||.. .+.+..+.+.+. .+..++.++ |... +...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEird---~e~~~~~l~~a~-~G~~v~~t~-Ha~~-~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMRD---LETIRLALTAAE-TGHLVMSTL-HTNS-AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCCC---HHHHHHHHHHHH-cCCEEEEEe-cCCc-HHHHHhHHHhhc
Confidence 47899999999999999974 333444444443 355554444 5433 446678876664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-06 Score=79.54 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQP 367 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~ 367 (521)
....|.||-=---+.+.+.+. -++|||||-+++.+ ++...|+++++ .|.-+||.+|.|
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSP 188 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSP 188 (233)
T ss_pred hhhhccchHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecCh
Confidence 445799998766666776655 89999999996544 45666666654 244444444433
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-07 Score=109.14 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=58.3
Q ss_pred ccCCCCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 306 EILRGISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
..+..||||||+|++||+++ +.+|+++||||||+++|......+..++... ..+.+|+++|+.. ...+||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~-~~~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKG-TMEVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChh-HHHHhhhHee
Confidence 34567999999999999998 4788999999999999987777776666543 2344555666655 4578999987
Q ss_pred Ee
Q 044321 381 IS 382 (521)
Q Consensus 381 L~ 382 (521)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 64
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-07 Score=107.59 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=60.4
Q ss_pred cCCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+..||||||++++||.+|+ .+|+++|||||++++|......+..++... ..+.+|++||+. .++.+||+++.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~-~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRS-PMIEYADRAIGV 1149 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcH-HHHHhcceeEeE
Confidence 35679999999999999998 488999999999999998877777777654 234455555554 467899999887
Q ss_pred eC
Q 044321 382 SN 383 (521)
Q Consensus 382 ~~ 383 (521)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 63
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-07 Score=88.49 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.||||||||||.++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=84.25 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q 044321 184 GRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~La 205 (521)
|.+.+|+||+|+|||||+-.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999998776
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=100.85 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcC--CCcEEEEeCC---ChhhHHH-HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 308 LRGISGGQRKRVTTGEMLVG--PAQALFMDEI---SNSTTFQ-IVNSLRQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~--~P~iLlLDEP---Ts~~~~~-i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
..|+|-=+.-...++.+|-. +++++|+||| |+..+-. +...+.+.+....+..++++||. .++.+++++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 34678877777788877755 8999999999 6643321 22223222233333445556666 566667664
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=86.95 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=38.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++++ +.|.+|+.++|+|+||+|||||+++|+|...++
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~ 190 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 446799999 999999999999999999999999999987664
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-06 Score=92.90 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=53.7
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------------ceeeecC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------------NRCDISQ 220 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------------~~~~v~q 220 (521)
....+|+++ +.|.+|++++|+|+||+|||||+++|+|...++.. ..+++++
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 345799999 99999999999999999999999999998766521 1145566
Q ss_pred CccccCCCCHHHHHHHHHH
Q 044321 221 HDVHIGEMTVRETLAFSAR 239 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~ 239 (521)
+...+..+++.+++.+.+.
T Consensus 220 d~s~~~rl~a~e~a~~iAE 238 (434)
T PRK07196 220 DESPLMRIKATELCHAIAT 238 (434)
T ss_pred CCChhhhHHHHHHHHHHHH
Confidence 6666666777777665543
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=83.28 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=32.1
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+=+.+.+++|+.++|+||||||||||+++|+|++++.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3345668899999999999999999999999998765
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-06 Score=67.68 Aligned_cols=36 Identities=39% Similarity=0.478 Sum_probs=28.7
Q ss_pred eeeeEEEEeC-CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 174 LKDVSGIIRP-GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 174 L~dVS~~I~~-Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++.++.+.+ |.+++|.|||||||||||.+|.=.+-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445677775 56999999999999999999876543
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-06 Score=98.84 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCCChHHHH------HHHHHHHHcCC------CcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHH
Q 044321 308 LRGISGGQRK------RVTTGEMLVGP------AQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETY 372 (521)
Q Consensus 308 ~r~LSGGqrQ------RvaIAraLv~~------P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~ 372 (521)
+..||||||+ |+++|++++.+ ++++||||||+++|..-...+..++... +.+.||+++|+...+
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~- 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV- 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH-
Confidence 4579999999 89999988853 3679999999998877666655544432 344566667776444
Q ss_pred hhcCeEEEEeC
Q 044321 373 DLFDDIILISN 383 (521)
Q Consensus 373 ~l~D~VivL~~ 383 (521)
..||+++.|..
T Consensus 858 ~~ad~~~~~~~ 868 (880)
T PRK02224 858 GAADDLVRVEK 868 (880)
T ss_pred HhcCeeEEeec
Confidence 68999999964
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=95.08 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=86.4
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCChHHHHHHHH--hCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 173 ILKDV-SGIIRPGRMTLLLGPPGSVKTTLLLAL--AGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 173 iL~dV-S~~I~~Ge~~~LlGpnGSGKSTLLk~L--aG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
-|+.+ .+=+++|.+++|.||||||||||.... .|..... ....||.-+ -+..+-+..+..+......
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g-e~~lyvs~e------E~~~~l~~~~~~~G~~~~~--- 78 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD-EPGVFVTFE------ESPQDIIKNARSFGWDLQK--- 78 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEe------cCHHHHHHHHHHcCCCHHH---
Confidence 45554 567899999999999999999999865 4433211 223455432 2344433333222111000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH--HHHcC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG--EMLVG 327 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA--raLv~ 327 (521)
.....+...+...+. .....+++.+++.+..+.... .+|+|++|||.|+ .+|..
T Consensus 79 ---~~~~g~l~~~~~~~~----------------~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~ 134 (484)
T TIGR02655 79 ---LVDEGKLFILDASPD----------------PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQ 134 (484)
T ss_pred ---HhhcCceEEEecCch----------------hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhh
Confidence 000000000000000 000112334455444444433 4999999999999 56655
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhH--------H-HhhcCeEEEEe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPE--------T-YDLFDDIILIS 382 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~--------~-~~l~D~VivL~ 382 (521)
.|+.+ ......+.+.++.+ +..+.|++++.|+ ... + ..+||.|++|+
T Consensus 135 ~~~~~------~~~r~~l~~Li~~L-~~~g~TvLLtsh~-~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 135 QYDAV------SVVRREIFRLVARL-KQIGVTTVMTTER-IEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred hcCch------HHHHHHHHHHHHHH-HHCCCEEEEEecC-cccccccccCCceeEeeeeEEEEE
Confidence 54433 22334455555554 3345666666544 322 2 55889999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=89.20 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=46.0
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec---------------ChhHHHhhcCeEEEEeCCEE--
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ---------------PAPETYDLFDDIILISNGHI-- 386 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h---------------~~~~~~~l~D~VivL~~G~i-- 386 (521)
+|..+|+++++||.-..-+.++...+.. .++.++.+.| +...+...+|.|+.+.+|+|
T Consensus 320 lLR~rPD~IivGEiRd~Et~~~~~~l~~-----ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~ 394 (602)
T PRK13764 320 LLLVRPDYTIYDEMRKTEDFKIFADMRL-----AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVSK 394 (602)
T ss_pred HHhhCCCEEEECCCCCHHHHHHHHHHHH-----cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEEE
Confidence 3778999999999887666555444432 2344555556 55566778999999999999
Q ss_pred EEecCH
Q 044321 387 VYQGPR 392 (521)
Q Consensus 387 v~~G~~ 392 (521)
+|.+..
T Consensus 395 v~~~~~ 400 (602)
T PRK13764 395 VYDLEF 400 (602)
T ss_pred EEeeee
Confidence 777763
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-05 Score=81.87 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=63.7
Q ss_pred CCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH-------------------HHHHHHHHHHH
Q 044321 295 LDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ-------------------IVNSLRQFIHI 355 (521)
Q Consensus 295 L~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~-------------------i~~~L~~l~~~ 355 (521)
|+...||.-- ....=||-.-|=..|.+||=..+++||+||=|+++.+- +++.++.+.++
T Consensus 309 LP~g~dT~~F--sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~ 386 (448)
T PF09818_consen 309 LPGGKDTTCF--STENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK 386 (448)
T ss_pred CCCCCCCCcc--cccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH
Confidence 5655665421 22358999999999999999999999999988753332 23445556555
Q ss_pred cCCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 356 LEGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 356 ~~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.+.++|+++ --+...++.+|+|++|++=+
T Consensus 387 ~GvStIlV~-Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 387 LGVSTILVV-GGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred cCceEEEEe-ccchhhHhhCCEEEEecCcc
Confidence 666666665 55667889999999998754
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.2e-06 Score=87.63 Aligned_cols=78 Identities=24% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHhhhhhcCCC--CCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccccc
Q 044321 88 QRLVEKLVKVAEVYNEEFLLKLKNRIARVGIS--LPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILP 165 (521)
Q Consensus 88 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~ 165 (521)
....+|++++++.++.. +.+ ...-.+.|+||++.+..
T Consensus 104 ~~~~ER~~~Ll~v~~vn------------~~~~e~~~~ri~Fe~LTf~YP~----------------------------- 142 (415)
T TIGR00767 104 PKEGERYFALLKVESVN------------GDDPEKAKNRVLFENLTPLYPN----------------------------- 142 (415)
T ss_pred cccHhHHHHHhCCCccC------------CCCccccCCCeEEEEeeecCCC-----------------------------
Confidence 34567888888776641 222 12346999999998731
Q ss_pred CCCCcceeee-----------eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 166 SRKKHLTILK-----------DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 166 ~~~~~~~iL~-----------dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.+.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 143 ----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 143 ----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred ----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 112343 89999999999999999999999999999987654
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.1e-06 Score=85.07 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=26.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..++.+++|.||+||||||+|++|.+.+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 467889999999999999999999986653
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.3e-06 Score=81.80 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=33.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcccc
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~ 225 (521)
++|++++|+||||||||||+++|++++.+ ....++++++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~ 45 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYYK 45 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccccc
Confidence 57999999999999999999999998764 2345677766543
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.5e-06 Score=81.85 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=27.0
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 173 ILKDV-SGIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 173 iL~dV-S~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
-|+.+ .+=+++|++++|.||||||||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 34453 4568999999999999999999988654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00016 Score=72.59 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=34.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
....|+++.+-+.+|++++|.|++|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999998876643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00033 Score=81.73 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=41.3
Q ss_pred HHHHHcCCCcEEEEeCCChhh-HHHHHHHHHHHH---HHcCCeEEEEEecChhHHHh--hcCeEEEEeCCEEEE
Q 044321 321 TGEMLVGPAQALFMDEISNST-TFQIVNSLRQFI---HILEGTILISLLQPAPETYD--LFDDIILISNGHIVY 388 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~-~~~i~~~L~~l~---~~~~~t~ii~i~h~~~~~~~--l~D~VivL~~G~iv~ 388 (521)
|++++.++|+++++|||+..+ +....+.+.+++ ++.++ ++++++|....+.. .++.|+-....+|+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~-~vil~TQs~~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANC-LVLMATQSLSDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence 677889999999999999976 344444443333 22344 55556677666654 344444444455543
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-05 Score=82.58 Aligned_cols=43 Identities=37% Similarity=0.476 Sum_probs=32.5
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+=+.+|++++|.|+||+|||||+..++...........|+..+
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 4688999999999999999999998887554332233566543
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=63.42 Aligned_cols=27 Identities=52% Similarity=0.707 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+..+.|.||+|+|||||++.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999998653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=81.91 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHHcC---------CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecCh
Q 044321 310 GISGGQRKRVTTGEMLVG---------PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPA 368 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~---------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~ 368 (521)
-+|.||+|++.||.+|+. .|+|||||||++++|..-.+.|.+.+...+..++++ +|+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it-~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVT-AISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEE-ecCh
Confidence 489999999999999999 999999999999999999998888876443455554 4444
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1e-05 Score=76.69 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999999998765
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=76.59 Aligned_cols=27 Identities=41% Similarity=0.695 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
|++++|+||||||||||+++|++.+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998754
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.6e-05 Score=75.61 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=33.3
Q ss_pred ceeeeeeEEEEeCCc-EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGR-MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge-~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+++.++..+++|. +++|.||||+|||||++.++..+.+
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 457777777777655 8999999999999999999987654
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-05 Score=80.16 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=39.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
....+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~ 97 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV 97 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 446799999 9999999999999999999999999999887753
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=72.17 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=28.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..+-+|+.+.-....++.|.|||.+||||+||.++=
T Consensus 30 ~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~ 65 (235)
T PF00488_consen 30 KFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGL 65 (235)
T ss_dssp SC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHH
T ss_pred ceecceeecCCCceeEEEEeCCCccchhhHHHHHHH
Confidence 356777777666667999999999999999998864
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.4e-05 Score=90.49 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=30.0
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+++....+++++|+|++|+|||||++++++.+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 45677889999999999999999999998866543
|
syringae 6; Provisional |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=78.54 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=30.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.|.+++| ++.|+.++|+||||+|||+|+.+|+..
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4667788 999999999999999999999999664
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=73.21 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhH--HHhhcCeEEEEeCC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPE--TYDLFDDIILISNG 384 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~--~~~l~D~VivL~~G 384 (521)
-|+-.|..||.++..+|+.+..+| +.+.+.+.+.+.+.+.+. .+.++++..|...+ ...+||.+++++-+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999888777 567777777666665443 22344444444422 56789999887643
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00037 Score=73.73 Aligned_cols=42 Identities=36% Similarity=0.466 Sum_probs=31.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ 220 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q 220 (521)
+=+.+|+++.|.|+||+|||||+..++..+........|+..
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 457899999999999999999999988755433223345544
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.2e-05 Score=83.09 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=37.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++.++ .|.+|+.++|+|||||||||||++|+++..++
T Consensus 151 TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd 192 (450)
T PRK06002 151 TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD 192 (450)
T ss_pred CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4467899896 99999999999999999999999999988765
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.9e-05 Score=82.13 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=38.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++++ +.|.+|+.++|+|+||+|||||+++|++...++
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~d 178 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEAD 178 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCC
Confidence 345799999 999999999999999999999999999987664
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.2e-05 Score=75.51 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999764
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=76.11 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=34.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..++++++..+..|++++|+||||+||||++..|++.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45788888999999999999999999999999999864
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.7e-05 Score=86.88 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=57.7
Q ss_pred cCCCCChHHHHHHHHHHHHc------CC--CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcC
Q 044321 307 ILRGISGGQRKRVTTGEMLV------GP--AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv------~~--P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D 376 (521)
++..|||||+=.++||-+|+ .+ -++|||||||..+|.+..+.+...+... ++-.|+++||+ ++..+.||
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~-eel~e~~~ 890 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV-EELKERAD 890 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh-HHHHHhCC
Confidence 67789999998877775544 56 6999999999999998877777766543 23444455555 57778999
Q ss_pred eEEEEeC
Q 044321 377 DIILISN 383 (521)
Q Consensus 377 ~VivL~~ 383 (521)
.++.+..
T Consensus 891 ~~i~V~k 897 (908)
T COG0419 891 VRIRVKK 897 (908)
T ss_pred eEEEEEe
Confidence 9999874
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.3e-05 Score=83.31 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=39.6
Q ss_pred eeeeeeEEEE---eCCcE-----EEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcccc
Q 044321 172 TILKDVSGII---RPGRM-----TLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I---~~Ge~-----~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~ 225 (521)
.++++++..+ ++|+. ++|+|++|||||||+++|.+.+.+.....+.++.++.++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 3566666666 56665 999999999999999999999876432345566655543
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.6e-05 Score=91.38 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCCCChHHHHHHH----HHHH--------HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEE
Q 044321 308 LRGISGGQRKRVT----TGEM--------LVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISL 364 (521)
Q Consensus 308 ~r~LSGGqrQRva----IAra--------Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i 364 (521)
..+|||||||+++ +|++ +..+|++++||||++++|......+.+++..++.++||++
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s 1313 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTS 1313 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 4679999999996 5644 5589999999999999999999999999888766665543
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.2e-05 Score=72.27 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=28.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++++++.+.|| +++|.||||+||||++.+|.-.+
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 347788888887 99999999999999999987644
|
|
| >COG3044 Predicted ATPase of the ABC class [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00049 Score=72.04 Aligned_cols=91 Identities=19% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHH----------HHH---HHHHHHHc-C-Ce
Q 044321 295 LDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQI----------VNS---LRQFIHIL-E-GT 359 (521)
Q Consensus 295 L~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i----------~~~---L~~l~~~~-~-~t 359 (521)
|+...||.-.. ...=||-+.+=-.|=+++=...++||+||=++++..-+ .+. |...+..+ + ..
T Consensus 307 LPggkdTp~fv--tgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~i 384 (554)
T COG3044 307 LPGGKDTPDFV--TGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLI 384 (554)
T ss_pred CCCCCCCcccc--cCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCce
Confidence 44555554211 12379999999999999999999999999777322211 111 11222222 2 24
Q ss_pred EEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 360 ILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.+|+++--.....+.+|++|+|++-+-.
T Consensus 385 S~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 385 STIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred EEEEEeccchhhhhhcceEEEecccCcc
Confidence 4455556666778899999999987754
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.1e-05 Score=80.51 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=38.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++++ +.|.+|+.++|+|+||+|||||+++|+|...++
T Consensus 154 TGi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 154 VGIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred cceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 456799999 999999999999999999999999999987664
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.5e-05 Score=71.73 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999754
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.1e-05 Score=76.09 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCC--CCCceeeecCCccccC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDS--SLKNRCDISQHDVHIG 226 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~--~~~~~~~v~q~d~~~~ 226 (521)
+++|.||||||||||++.|++.+.+ .......+++++.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~ 43 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP 43 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc
Confidence 5899999999999999999998854 2222345666665443
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.1e-05 Score=74.75 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
+..+++|.||||||||||++.|++.+.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 456999999999999999999999987653
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.58 E-value=4.4e-05 Score=71.89 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
|++++|+||||||||||++.|++.+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999997643
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.57 E-value=8e-05 Score=80.00 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=39.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
....+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~ 173 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV 173 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 346799999 9999999999999999999999999999887653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 4e-14
Identities = 85/545 (15%), Positives = 158/545 (28%), Gaps = 186/545 (34%)
Query: 64 KGILTTSRGEANEVD--VNNLGQQERQRL------------VEKLVKVAEVYNEEFLLKL 109
K IL+ E+D + + V+K V+ N +FL+
Sbjct: 43 KSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-- 95
Query: 110 KNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKK 169
+ I P++ Y+ R + N + F N+ SR +
Sbjct: 96 -SPIKTEQRQ-PSMM---------TRMYIEQR------DRLYNDNQVF-AKYNV--SRLQ 135
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTL----------------------------- 200
L+ +RP + L+ G GS KT +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 201 ------LLALAGKLDSSLKNRCDISQ---HDVHIGEMTVRETL----------------- 234
L L ++D + +R D S +H + +R L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 235 -----AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVI---- 285
AF+ C+ +L TR V +A +S+
Sbjct: 256 AKAWNAFNLSCK-------ILL-TTR-----------FKQVTDFLSAATTTHISLDHHSM 296
Query: 286 ---TDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT 342
D + +L D D L R+ +TT + D ++
Sbjct: 297 TLTPDEVKSLLLK--YLDCRPQD--LP------REVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 343 FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDI-ILISNGHIVYQGPREYVLEFF-K 400
++ VN + I+E + +++L+PA E +FD + + + HI P +L
Sbjct: 347 WKHVN-CDKLTTIIESS--LNVLEPA-EYRKMFDRLSVFPPSAHI----PTI-LLSLIWF 397
Query: 401 FMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460
+ + ++ ++ K T + S YL E
Sbjct: 398 DVIKSDVM-----VVVNKLHKYSLVEKQP------------KESTISIPSIYL------E 434
Query: 461 LRIPFDKRKS-HRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFK-----LSQNE 514
L++ + + HR+ + Y + + + P Y + L E
Sbjct: 435 LKVKLENEYALHRSIVDH--YNIPKT----FDSDDLIPPYLDQ---YFYSHIGHHLKNIE 485
Query: 515 NAPRF 519
+ R
Sbjct: 486 HPERM 490
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 6e-08
Identities = 68/466 (14%), Positives = 143/466 (30%), Gaps = 142/466 (30%)
Query: 21 SVWRSNSV----SAGAFSMSSREEQDDEEALIWAAVLEKLPTYNRLKKGILTTSRGEANE 76
V S V F ++ + E L +L+KL ++ + S +N
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKL--LYQIDPNWTSRSDHSSNI 223
Query: 77 VDVNNLGQQERQRLVEK------LVKVAEVYNEE----FLLKLK-------NRIARVGIS 119
+ Q E +RL++ L+ + V N + F L K ++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 120 LPTIEVRFEHLNV---EAEA------YVGSRA--LP-----------------------T 145
T + +H ++ E Y+ R LP T
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 146 FFNF-------CANIVEGFLNSLNILPSRK--KHLTIL-KDVSGIIRPGRMTLLLGPPGS 195
+ N+ I+E LN L RK L++ I ++L+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWF--DV 399
Query: 196 VKTTLLLALAGKLDSSL--KNRCD--ISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251
+K+ +++ + SL K + IS ++ L + + + + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---------LELKVKLENEYALHRSIV 450
Query: 252 E---LTRREKAAGIKPDPDIDVF-------MKAAATEGQEVSVITDYILKILGLDVCADT 301
+ + + + + P F +K + ++ + +++ LD
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMT-----LFRMVFLD----- 499
Query: 302 MVGDEILRGISGGQRK--RVTTGEMLVGPAQALFMD------EIS-NSTTF-QIVNSLRQ 351
R + ++K +T G I N + ++VN++
Sbjct: 500 ------FRFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 352 FIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
F+ +E ++ S T D++ I E + E
Sbjct: 551 FLPKIEENLICS-----KYT-----DLL-----RIALMAEDEAIFE 581
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 9e-10
Identities = 48/249 (19%), Positives = 80/249 (32%), Gaps = 65/249 (26%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
T L +SG +R G + L+GP G+ K+TLL +AG + + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLE--AWSAT 69
Query: 232 ETLAFSARCQGVGSRYEMLAE-LTRREKAA-GIKPDPDIDVFMKAAATEGQEVSVITDYI 289
+ A + S+ + ++
Sbjct: 70 KL----ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV--------------- 110
Query: 290 LKILGLDVCADTMVGDEILRGISGGQRKRV--------TTGEMLVGPAQALFMDEISNS- 340
L LD +SGG+ +RV T + Q L +DE NS
Sbjct: 111 AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLDEPMNSL 164
Query: 341 ------TTFQIVNSLRQFIHILEG-TILISLLQPAPETYDL------FDDIILISNGHIV 387
+I+++L Q +G I++S +DL L+ G ++
Sbjct: 165 DVAQQSALDKILSALSQ-----QGLAIVMSS-------HDLNHTLRHAHRAWLLKGGKML 212
Query: 388 YQGPREYVL 396
G RE VL
Sbjct: 213 ASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 47/205 (22%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
+ L+ G IR G + ++GP G KTT + LAG + +
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE------------ 410
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPD---IDVFMKAAATEGQE 281
G++ T+A+ K IK + + ++ K +++
Sbjct: 411 -GKVEWDLTVAY---------------------KPQYIKAEYEGTVYELLSKIDSSKLNS 448
Query: 282 VSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN-- 339
T+ +LK LG+ D V D +SGG+ +RV L+ A +DE S
Sbjct: 449 NFYKTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYL 502
Query: 340 --STTFQIVNSLRQFIHILEGTILI 362
+ ++R + E T L+
Sbjct: 503 DVEQRLAVSRAIRHLMEKNEKTALV 527
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 54/310 (17%), Positives = 102/310 (32%), Gaps = 60/310 (19%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
+ I++ G + ++GP G+ KTT + LAG+L ++ +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL-----------IPNLCEDNDSWD 153
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKP---DPDIDVFMKAAATEGQEVSVIT-- 286
+ R L R K I+P +D+ K A +G+ ++
Sbjct: 154 NVIR--------AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK--AVKGKVRELLKKV 203
Query: 287 ------DYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN- 339
+ ++K L L+ D + +SGG+ +RV L+ A F DE S+
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSY 258
Query: 340 ---STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF------DDIILISNGHIVYQG 390
++ +R+ + +L+ +DL D I ++ VY
Sbjct: 259 LDIRQRLKVARVIRRLAN-EGKAVLVV-------EHDLAVLDYLSDVIHVVYGEPGVYG- 309
Query: 391 PREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKS 450
+ G + + D + + + + R V+
Sbjct: 310 --IFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKD- 366
Query: 451 FYLGKKLEDE 460
Y KLE E
Sbjct: 367 -YGSFKLEVE 375
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 9e-09
Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 34/238 (14%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
TILK +S I G +L G G+ KTTLL L ++ ++ +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT-SGTVNLFGKMPGKVGYSAE 93
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEG------QEVSVI 285
+ G S + +L + E+ + V A + G E+
Sbjct: 94 TV----RQHIGFVS-HSLLEKFQEGERVIDV-------VISGAFKSIGVYQDIDDEIRNE 141
Query: 286 TDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----T 341
+LK++G+ A +G +S G+++RV L+G Q L +DE +
Sbjct: 142 AHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 342 TFQIVNSLRQFIHILEG--TILIS-LLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+++ L I ++ ++ F I+L+ +G + QG E +L
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITA---NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 53/238 (22%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS-------QHDVH 224
+ + ++ + G + +LG G K+TLL L G ++ + ++ Q
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQSIGFVPQFFSS 77
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
+V + + G R + + K+ D V M+A
Sbjct: 78 PFAYSVLDIVLM-----G---RSTHIN-TFAKPKSH------DYQVAMQA---------- 112
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE-ISN---S 340
L L L A +SGGQR+ + + + + +DE S +
Sbjct: 113 -----LDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 341 TTFQIVNSLRQFIHILEGTILISL--LQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+++ L T++ + + + +L+ N G +L
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL-NKQNFKFGETRNIL 216
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 81/198 (40%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE---- 227
T L +++ I+ G LLGP GS K+TLL +AG + + ++ E
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IY-------KPTSGKIYFDEKDVT 68
Query: 228 ---------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP 266
MTV + +AF + P
Sbjct: 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA--------------------PRE 108
Query: 267 DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRKRVTTG 322
+ID ++ A K+L +D ++L +SGGQ++RV
Sbjct: 109 EIDKKVREVA--------------KMLHID---------KLLNRYPWQLSGGQQQRVAIA 145
Query: 323 EMLVGPAQALFMDE-ISN 339
LV + L +DE +SN
Sbjct: 146 RALVKEPEVLLLDEPLSN 163
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 51/244 (20%), Positives = 76/244 (31%), Gaps = 67/244 (27%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV------- 223
ILK +S I G + L+GP G+ KTT L ++ + S + +V
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEPHEV 86
Query: 224 --HIG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVF 271
I M E L F A S E+
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-----EIEEM--------------- 126
Query: 272 MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331
+ +I GL V S G +++ L+ +
Sbjct: 127 --------------VERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRL 167
Query: 332 LFMDEISNSTTFQIVNSLRQFIHIL--EG-TILIS--LLQPAPETYDLFDDIILISNGHI 386
+DE ++ +R+ + EG TIL+S + E L D I LI NG I
Sbjct: 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM---LEVEFLCDRIALIHNGTI 224
Query: 387 VYQG 390
V G
Sbjct: 225 VETG 228
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 40/199 (20%), Positives = 65/199 (32%), Gaps = 81/199 (40%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE--- 227
+ + VS ++ G LLGP G KTT LL LAG + + +++ +
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IY-------KPTSGEIYFDDVLV 67
Query: 228 ----------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPD 265
MTV E +AF R + +
Sbjct: 68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI--------------------SK 107
Query: 266 PDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRKRVTT 321
+++ + A + L +D +L +SGGQ++RV
Sbjct: 108 DEVEKRVVEIA--------------RKLLID---------NLLDRKPTQLSGGQQQRVAL 144
Query: 322 GEMLVGPAQALFMDE-ISN 339
LV + L DE +SN
Sbjct: 145 ARALVKQPKVLLFDEPLSN 163
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 81/198 (40%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE---- 227
T + ++ I+ G +LLGP G KTT L +AG L+ + ++ ++ G+
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LE-------EPTEGRIYFGDRDVT 76
Query: 228 ---------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP 266
MTV E +AF + + P
Sbjct: 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF--------------------PKD 116
Query: 267 DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRKRVTTG 322
+ID ++ AA ++L ++ E+L +SGGQR+RV
Sbjct: 117 EIDKRVRWAA--------------ELLQIE---------ELLNRYPAQLSGGQRQRVAVA 153
Query: 323 EMLVGPAQALFMDE-ISN 339
+V L MDE +SN
Sbjct: 154 RAIVVEPDVLLMDEPLSN 171
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 39/203 (19%), Positives = 61/203 (30%), Gaps = 86/203 (42%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE---- 227
L +V+ I G +LGP G+ KTT + +AG LD S +++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LD-------VPSTGELYFDDRLVA 70
Query: 228 --------------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAAG 261
+T E +AF +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------ 112
Query: 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRK 317
+I ++ A KIL + +L R +SG Q++
Sbjct: 113 --SKEEIRKRVEEVA--------------KILDIH---------HVLNHFPRELSGAQQQ 147
Query: 318 RVTTGEMLVGPAQALFMDE-ISN 339
RV LV L +DE SN
Sbjct: 148 RVALARALVKDPSLLLLDEPFSN 170
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 45/204 (22%)
Query: 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225
+K L +G + G + +LGP G KTT L G++ +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE------------- 322
Query: 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDV---FMKAAATEGQEV 282
G +T + L+ + + I P+ D V A+
Sbjct: 323 GSVTPEKQ------------------ILSYKPQR--IFPNYDGTVQQYLENASKDALSTS 362
Query: 283 SVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN--- 339
S + + K L L ++ V D +SGG+ +++ L A +D+ S+
Sbjct: 363 SWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
Query: 340 -STTFQIVNSLRQFIHILEGTILI 362
+ + ++++ + I
Sbjct: 418 VEERYIVAKAIKRVTRERKAVTFI 441
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 33/231 (14%)
Query: 174 LKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
K + + +LG G KTT+L LAG++ + + D + +E
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKI 292
+ EL K ++ + D + ++
Sbjct: 74 IYNYFKEL--------YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKEL 125
Query: 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNS 348
L + + +SGG +R+ L+ A D+ S+ + +
Sbjct: 126 LNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 349 LRQFIHILEGTILISLLQPAPETYDLF------DDIILISNGHIVYQGPRE 393
+R+ + +++ +DL D I +I VY +
Sbjct: 181 IRELLK--NKYVIVV-------DHDLIVLDYLTDLIHIIYGESSVYGRVSK 222
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 43/204 (21%)
Query: 165 PSRKKHL--TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHD 222
PS KK +L G + +++G G+ KTTL+ LAG L
Sbjct: 357 PSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---------- 406
Query: 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEV 282
G+ + ++ + +K A P +F K +
Sbjct: 407 ---GQDIPKLNVSM------------------KPQKIAPKFPGTVRQLFFKKIRGQFLNP 445
Query: 283 SVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN--- 339
TD ++K L +D D V +SGG+ +RV L PA +DE S
Sbjct: 446 QFQTD-VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
Query: 340 -STTFQIVNSLRQFIHILEGTILI 362
+R+FI + T I
Sbjct: 500 SEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 46/238 (19%), Positives = 75/238 (31%), Gaps = 48/238 (20%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
+ RPG++ L+G G K+T L LAGK +L +
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR---------FDDPPEWQ 141
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATE-----------GQ 280
E + + + +ML + A IKP +D +A +
Sbjct: 142 EIIKYFRGSELQNYFTKMLE----DDIKAIIKP-QYVDNIPRAIKGPVQKVGELLKLRME 196
Query: 281 EVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS-- 338
+ +KIL L+ V + +SGG+ +R G V A DE S
Sbjct: 197 KSPEDVKRYIKILQLE-----NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251
Query: 339 --NSTTFQIVNSLRQFIHILEG-TILI-----SLLQPAPETYDLFDDIILISNGHIVY 388
+R + ++ S+L L D + +I VY
Sbjct: 252 LDVKQRLNAAQIIRSLLA--PTKYVICVEHDLSVLD------YLSDFVCIIYGVPSVY 301
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 87/204 (42%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE---- 227
T ++++S ++ G +LLGP G KTT L +AG L+ + S+ ++IG+
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LE-------EPSRGQIYIGDKLVA 68
Query: 228 ---------------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAA 260
MTV + +AF + + V
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV----------------- 111
Query: 261 GIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQR 316
P +ID ++ A ++LGL E+L R +SGGQR
Sbjct: 112 ---PRQEIDQRVREVA--------------ELLGLT---------ELLNRKPRELSGGQR 145
Query: 317 KRVTTGEMLVGPAQALFMDE-ISN 339
+RV G +V Q MDE +SN
Sbjct: 146 QRVALGRAIVRKPQVFLMDEPLSN 169
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 49/234 (20%)
Query: 138 VGSRALPTFFNFCANIVEGFLNSLNILPSRKKHL--TILKDVSGIIRPGRMTLLLGPPGS 195
V R F VE +L P K L+ G I+ G + ++GP G
Sbjct: 264 VRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGI 323
Query: 196 VKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTR 255
KTT + LAG + + G++ T+A+
Sbjct: 324 GKTTFVKMLAGVEEPTE-------------GKIEWDLTVAY------------------- 351
Query: 256 REKAAGIKPDPD---IDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312
K IK D + ++ K A++ T+ +LK LG+ D V + +S
Sbjct: 352 --KPQYIKADYEGTVYELLSKIDASKLNSNFYKTE-LLKPLGIIDLYDREVNE-----LS 403
Query: 313 GGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTILI 362
GG+ +RV L+ A +DE S + ++R + E T L+
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 63/236 (26%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKNRCDISQHDVHIG- 226
+L+ ++ I G + GP G KTTLL ++ L + N I++ I
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82
Query: 227 ---------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
+++V + L A GV + +
Sbjct: 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------------ 118
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
L+ + + L +S G +RV L+ A+ +D+
Sbjct: 119 ------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEIYVLDDP 160
Query: 338 SNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ + + + I + +G ++IS + E D +
Sbjct: 161 VVAIDEDSKHKVLKSILEILKEKGIVIIS----SREELSYCDVNENLHKYSTKIDK 212
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 57/186 (30%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LKNRCDISQH 221
+ L++++ + G ++LGP GS KTTLL A++G L S N ++ +
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI 70
Query: 222 DVHIG-----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDV 270
+I +TV + + +G+ R+
Sbjct: 71 RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----------- 108
Query: 271 FMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330
+LK L L + L +S GQ V T L +
Sbjct: 109 ----------------LEMLKALKL----GEEILRRKLYKLSAGQSVLVRTSLALASQPE 148
Query: 331 ALFMDE 336
+ +DE
Sbjct: 149 IVGLDE 154
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 81/280 (28%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--------------KLDSSLKNRCDIS 219
LK ++ I+ G +T +LG G K+TL G +D S K +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 220 QH--------DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVF 271
+ D + +V + ++F A + E+ +R A
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA----------- 127
Query: 272 MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331
LK G++ D +S GQ+KRV +LV +
Sbjct: 128 ------------------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKV 164
Query: 332 LFMDE-------ISNSTTFQIVNSLRQFIHILEGTILIS---LLQPAPETYDLFDDIILI 381
L +DE + S +++ +++ + I TI+I+ + D++ ++
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGI---TIIIATHDI----DIVPLYCDNVFVM 217
Query: 382 SNGHIVYQGPREYVL---EFFKFMGFECPKRKGVADFLQE 418
G ++ QG + V E + + P+ + + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 81/199 (40%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE--- 227
+ + KD++ I G + +GP G K+TLL +AG L+ I+ D+ IGE
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LE-------TITSGDLFIGEKRM 67
Query: 228 ----------------------MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPD 265
++V E ++F + G
Sbjct: 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA--------------------KK 107
Query: 266 PDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL----RGISGGQRKRVTT 321
I+ + A ++L L +L + +SGGQR+RV
Sbjct: 108 EVINQRVNQVA--------------EVLQL---------AHLLDRKPKALSGGQRQRVAI 144
Query: 322 GEMLVGPAQALFMDE-ISN 339
G LV +DE +SN
Sbjct: 145 GRTLVAEPSVFLLDEPLSN 163
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 39/190 (20%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
+L ++ R + GP G K+TL+ A+A +Q + +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF-----PTQEECRTVYV---- 500
Query: 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKI 292
+++ + +D ++ + + L
Sbjct: 501 -------------EHDIDGTHSDTSV---------LDFVFESGVGTKEAIK----DKLIE 534
Query: 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQF 352
G D M+ + +SGG + ++ ++ A L +DE +N V L +
Sbjct: 535 FGFT---DEMI-AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590
Query: 353 IHILEGTILI 362
++ T +
Sbjct: 591 LNTCGITSIT 600
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 289 ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNS 348
+LGLD +V +RG+SGGQ+ ++ + +DE +N + +
Sbjct: 883 HCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA 939
Query: 349 LRQFIHILEGTILI-----SLLQPAPETYDLFDDIILISNGHIV-YQG 390
L + + EG ++I + +L +++ + +G +
Sbjct: 940 LSKALKEFEGGVIIITHSAEFTK------NLTEEVWAVKDGRMTPSGH 981
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 58/183 (31%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---SLKNRCDISQHDVH-- 224
++ VS IR G M LLGP GS KTT+L +AG + + + ++
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK-RVTDLPPQKR 87
Query: 225 -IG----------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMK 273
+G MTV + ++F R + V E+ R +
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPK-----DEMDARVREL------------- 129
Query: 274 AAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333
L+ + L+ A+ + +SGGQ++RV L Q L
Sbjct: 130 ----------------LRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLL 168
Query: 334 MDE 336
DE
Sbjct: 169 FDE 171
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 57/168 (33%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTL--LLA-----LAGK--LD---------SSLKN 214
IL+D+S +P + GP G K+T+ LL AG+ +D + ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 215 RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKA 274
+ D I T+RE L + G++ D + +
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTY------------------------GLEGDYTDEDLWQV 112
Query: 275 AATEGQEVSVITDYILKI-LGLDVCADTMVGDEILRGI--SGGQRKRV 319
+++ ++ + L +T VG+ RG+ SGGQR+R+
Sbjct: 113 L-----DLAFARSFVENMPDQL----NTEVGE---RGVKISGGQRQRL 148
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 48/187 (25%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG--KLDS---SLKNRCDISQHDVHI 225
L VS + G +TL++GP GS K+TL+ + G K D +N+ DI+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK-DITNKEPAE 78
Query: 226 ----------------GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
EMTV E L C G + + ++
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE--------- 129
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329
M A + IL+ L L D G+ +SGGQ K V G L+
Sbjct: 130 --MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNP 172
Query: 330 QALFMDE 336
+ + MDE
Sbjct: 173 KMIVMDE 179
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.98 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.88 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.84 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.84 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.81 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.8 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.78 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.75 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.74 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.72 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.71 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.69 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.68 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.66 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.66 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.64 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.61 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.59 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.58 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.58 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.57 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.55 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.55 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.54 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.54 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.54 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.53 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.52 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.51 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.48 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.46 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.46 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.45 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.45 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.44 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.44 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.41 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.39 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.35 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.24 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.22 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.22 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.21 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.2 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.2 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.2 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.18 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.16 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.14 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.13 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.12 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.11 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.11 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.06 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.06 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.04 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.04 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.01 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.98 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.97 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.94 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.88 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.86 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.83 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.81 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.78 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.77 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.69 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.69 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.67 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.59 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.58 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.58 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.58 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.56 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.53 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.51 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.49 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.45 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.39 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.28 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.27 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.26 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.23 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.23 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.21 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.19 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.15 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.14 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.09 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.08 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.07 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.07 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.03 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.02 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.97 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.95 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.95 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.93 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.92 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.9 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.9 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.88 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.83 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.82 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.77 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.73 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.71 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.71 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.7 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.68 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.67 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.66 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.65 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.6 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.59 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.57 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.48 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.45 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.44 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.42 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.41 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.38 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.38 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.37 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.35 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.35 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.33 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.32 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.3 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.28 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.27 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.25 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.25 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.23 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.23 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 97.22 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.2 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.2 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.19 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.15 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.09 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.06 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.05 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.04 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.04 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 97.03 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.02 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.01 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.99 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.99 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.96 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.96 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.93 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.91 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.89 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.88 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.87 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.86 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.86 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.86 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.85 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.84 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.83 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.82 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.81 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.79 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.77 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.77 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.77 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.77 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.76 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.67 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.67 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.66 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.62 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.61 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 96.6 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.59 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.58 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.58 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.57 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.57 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.51 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.5 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.5 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.49 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.46 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.46 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.45 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.44 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.44 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.44 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.43 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.39 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.38 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.38 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.38 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.36 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.35 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.34 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.34 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.31 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.3 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.3 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.29 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.25 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.24 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.21 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.19 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 96.19 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.18 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.17 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.13 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.11 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.11 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.09 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.03 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.02 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.0 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.0 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.98 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.97 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.96 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.95 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.93 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.91 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.9 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.89 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.89 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.84 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.84 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.83 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.83 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.83 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.83 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.83 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.83 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.82 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.82 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.82 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.81 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.8 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.79 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.79 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.78 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.78 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.78 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.76 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 95.75 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.74 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.74 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.73 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.72 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.71 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.71 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.71 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.7 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.69 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.69 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.69 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.69 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.66 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.66 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.64 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.62 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.6 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.59 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.57 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.56 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.56 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.55 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.55 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.51 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.5 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.49 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.48 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.46 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.45 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.43 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 95.42 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.41 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.41 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.4 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.4 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.38 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.38 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.38 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.37 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.36 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.36 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.34 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.34 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.33 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.33 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.31 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.3 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.3 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.29 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.29 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.29 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.27 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.26 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.26 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.26 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.26 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.25 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.24 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.24 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.23 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.2 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.19 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.19 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.19 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.18 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.18 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.16 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.15 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.15 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.14 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.12 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.11 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.11 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.1 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.1 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.1 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.09 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.09 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.09 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.08 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.06 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.05 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.04 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.03 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.02 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.01 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.01 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.0 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.99 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.99 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.97 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.97 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.97 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.96 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.96 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.95 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.94 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.94 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.93 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.93 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.92 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.89 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.87 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.86 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.86 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.85 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.85 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.81 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.79 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.78 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.78 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.76 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.75 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.74 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.73 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.73 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.73 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.69 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.67 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.65 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.62 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.6 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.56 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.56 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.54 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.52 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.52 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.5 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 94.5 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.49 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.48 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.47 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.47 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.45 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.39 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.38 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.38 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.37 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.37 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.34 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.32 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.29 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.29 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.29 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.29 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.24 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.23 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.21 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.18 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.17 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.16 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.12 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.09 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.99 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.99 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.98 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 93.96 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.96 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.96 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 93.93 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.86 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.85 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.81 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 93.73 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.6 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.58 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.56 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 93.5 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 93.48 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 93.42 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=352.09 Aligned_cols=203 Identities=21% Similarity=0.272 Sum_probs=165.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~ 227 (521)
...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|+..+++.
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC
Confidence 35799999999999999999999999999999999999987521 23899999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+....+... .+...+++++|+.+||.+..+.+++
T Consensus 120 ~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~--- 162 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS--- 162 (366)
T ss_dssp SCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT---
T ss_pred CCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh---
Confidence 999999999865543211 1123356789999999988877665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.++++++ .+++|++++|+...+..+||+|++|++|
T Consensus 163 --~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 163 --NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240 (366)
T ss_dssp --TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999988876666555554432 2566677789999999999999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 385 HIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
++++.|++++++ ..|.......|+...
T Consensus 241 ~iv~~g~~~ev~--------~~p~~~~~~~~~~~~ 267 (366)
T 3tui_C 241 ELIEQDTVSEVF--------SHPKTPLAQKFIQST 267 (366)
T ss_dssp EEEECCBHHHHH--------SSCCSHHHHHHHHHH
T ss_pred EEEEEcCHHHHH--------hCCCcHHHHHHHhhc
Confidence 999999999984 345555556666554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=351.74 Aligned_cols=199 Identities=21% Similarity=0.309 Sum_probs=162.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---------------------CceeeecCCccccCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---------------------KNRCDISQHDVHIGEM 228 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---------------------~~~~~v~q~d~~~~~l 228 (521)
.+.+|+||||+|++||+++|+|||||||||||++|+|++.|+. +..+||+|+..+++.+
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~l 95 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHL 95 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCC
Confidence 4579999999999999999999999999999999999998752 1238999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.|+....+... .+...+++++|+.+||.+..+.+++
T Consensus 96 tV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~---- 137 (359)
T 3fvq_A 96 TVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH---- 137 (359)
T ss_dssp CHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG----
T ss_pred CHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh----
Confidence 99999999765432211 1122356788999999998887775
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+ +.++ .++++|+++|+..++..+||+|++|++|
T Consensus 138 -~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~~G 215 (359)
T 3fvq_A 138 -ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMKQG 215 (359)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECC
Confidence 499999999999999999999999999999988876666654 3332 3566777889999999999999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 385 HIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
+|+..|+++++.. .|.....+.|+
T Consensus 216 ~i~~~g~~~el~~--------~p~~~~~a~~~ 239 (359)
T 3fvq_A 216 RILQTASPHELYR--------QPADLDAALFI 239 (359)
T ss_dssp EEEEEECHHHHHH--------SCSCHHHHHHH
T ss_pred EEEEEeCHHHHHh--------CcccHHHHHhc
Confidence 9999999999853 45444455554
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=353.99 Aligned_cols=188 Identities=23% Similarity=0.342 Sum_probs=157.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
...+|+||||+|++||+++|+||||||||||||+|+|+++|+. ...+||+|+..+++.+||+|
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~e 94 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAE 94 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHH
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHH
Confidence 3579999999999999999999999999999999999998762 12389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+...+++++++.+||.+..+.++. .||
T Consensus 95 ni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p~-----~LS 135 (381)
T 3rlf_A 95 NMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----ALS 135 (381)
T ss_dssp HHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCGG-----GSC
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----HCC
Confidence 9999876543211 1123356789999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++.++ .++++|+++|+..++..+||+|++|++|+++..
T Consensus 136 GGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998876655555544332 256666778999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 216 g~~~~l~ 222 (381)
T 3rlf_A 216 GKPLELY 222 (381)
T ss_dssp ECHHHHH
T ss_pred eCHHHHH
Confidence 9999985
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=332.79 Aligned_cols=188 Identities=23% Similarity=0.271 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCc-cccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHD-VHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d-~~~~~l 228 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+. ..++.+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~ 100 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA 100 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccC
Confidence 3599999999999999999999999999999999999987521 137899985 345589
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.|+....+... .+....++++++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 142 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH---- 142 (275)
T ss_dssp BHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc----
Confidence 99999999865433211 1122356778999999988887765
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+++||+++|+...+..+||+|++|++|+
T Consensus 143 -~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~ 221 (275)
T 3gfo_A 143 -CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGR 221 (275)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTE
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 49999999999999999999999999999988876655555544332 15566677888889999999999999999
Q ss_pred EEEecCHhHHHH
Q 044321 386 IVYQGPREYVLE 397 (521)
Q Consensus 386 iv~~G~~~~v~~ 397 (521)
+++.|++++++.
T Consensus 222 i~~~g~~~~~~~ 233 (275)
T 3gfo_A 222 VILQGNPKEVFA 233 (275)
T ss_dssp EEEEECHHHHTH
T ss_pred EEEECCHHHHhc
Confidence 999999998853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=344.24 Aligned_cols=188 Identities=27% Similarity=0.330 Sum_probs=156.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. +..+||+|+..+++++||+|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFE 94 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHH
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHH
Confidence 3469999999999999999999999999999999999998752 12389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+....++++++.+||.+..+.+++ .||
T Consensus 95 ni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~LS 135 (359)
T 2yyz_A 95 NIAFPLRARRISK----------------------------------DEVEKRVVEIARKLLIDNLLDRKPT-----QLS 135 (359)
T ss_dssp HHHGGGSSSCSHH----------------------------------HHTTHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred HHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754332110 0122356789999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 136 gGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998887666666555432 245666678999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 216 g~~~~l~ 222 (359)
T 2yyz_A 216 GTPDEVY 222 (359)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999885
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=343.58 Aligned_cols=188 Identities=26% Similarity=0.347 Sum_probs=156.7
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. +..+||+|+..+++++||+|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYK 94 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHH
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHH
Confidence 3579999999999999999999999999999999999998752 12389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+....++++++.+||.+..+.+++ .||
T Consensus 95 ni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~LS 135 (362)
T 2it1_A 95 NIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYPW-----QLS 135 (362)
T ss_dssp HHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-----GSC
T ss_pred HHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCChh-----hCC
Confidence 9999865432210 0122356778999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 136 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998887666665555432 145666678999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 216 g~~~~~~ 222 (362)
T 2it1_A 216 GTPDEVY 222 (362)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999885
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=326.87 Aligned_cols=186 Identities=24% Similarity=0.287 Sum_probs=154.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV 102 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBH
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCH
Confidence 34799999999999999999999999999999999999987632 12789998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+...... .+....++.+++.+||.+..+..++ .
T Consensus 103 ~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 141 (266)
T 4g1u_C 103 SEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR-----V 141 (266)
T ss_dssp HHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG-----G
T ss_pred HHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----c
Confidence 9999987432110 0112345678999999988887765 4
Q ss_pred CChHHHHHHHHHHHHcC------CCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 311 ISGGQRKRVTTGEMLVG------PAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|||||||||+|||||+. +|++|||||||+++|......+.+++++. ++++|++++|+..++..+||+|++|
T Consensus 142 LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 99999999999999999 99999999999998876666555554432 4567777889999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 222 AQGKLVACGTPEEVL 236 (266)
T ss_dssp ETTEEEEEECHHHHC
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999998873
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=324.12 Aligned_cols=187 Identities=22% Similarity=0.309 Sum_probs=153.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~lT 229 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+|
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 116 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT 116 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence 4699999999999999999999999999999999999887510 1378999988889999
Q ss_pred HHHHHHHHH-HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSA-RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~-~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+||+.|+. ...+... .+....++.+++.+||.+..++.++
T Consensus 117 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 158 (263)
T 2olj_A 117 VLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD---- 158 (263)
T ss_dssp HHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG----
T ss_pred HHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh----
Confidence 999999864 2222110 0112245678999999988877665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|++|++
T Consensus 159 -~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 159 -SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237 (263)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred -hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 49999999999999999999999999999998887666666655432 356677788999899999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 238 ~~~g~~~~~~ 247 (263)
T 2olj_A 238 IEEGKPEDLF 247 (263)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=342.41 Aligned_cols=188 Identities=28% Similarity=0.378 Sum_probs=156.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
.+.+|+||||+|++||+++|+|||||||||||++|+|+++|+. +..+||+|+..+++.+||+|
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYD 106 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHH
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHH
Confidence 3469999999999999999999999999999999999998752 12379999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+....++++++.+||.+..+.+++ .||
T Consensus 107 ni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 147 (355)
T 1z47_A 107 NVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFPH-----ELS 147 (355)
T ss_dssp HHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----cCC
Confidence 9999865432210 0122356779999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 148 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998887666665554432 245666678999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 228 g~~~~l~ 234 (355)
T 1z47_A 228 GTPEEVY 234 (355)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999885
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=337.96 Aligned_cols=197 Identities=22% Similarity=0.303 Sum_probs=162.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+ +|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+||+|+..+++.+||+|
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 34 99999999999999999999999999999999999987621 1379999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... . ..++++++.+||.+..+.+++ .||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~~-----~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNPL-----TLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754322100 0 245678999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998887666666555432 255666678999999999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|+++++. ..|....++.|+.
T Consensus 210 g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 210 GKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp ECHHHHH--------SSCCTTHHHHHHC
T ss_pred CCHHHHH--------hCcccHHHHHhcC
Confidence 9999883 4566556677764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=320.91 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=147.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++.
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 4699999999999999999999999999999999999987521 13799999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-cccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-DTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~ 306 (521)
+||+||+.++......... . ..+....+.++++.+||.+.. +.+++
T Consensus 98 ~tv~enl~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 144 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAM--------------------S-----------GEERRKRALECLKMAELEERFANHKPN-- 144 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCC--------------------C-----------HHHHHHHHHHHHHHTTCCGGGTTCCGG--
T ss_pred CcHHHHHHHHHHhhhccCC--------------------C-----------HHHHHHHHHHHHHHCCCChhhhhCChh--
Confidence 9999999997543211000 0 001123456789999998753 66554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.. +..+||+|++|++
T Consensus 145 ---~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~d~i~~l~~ 220 (235)
T 3tif_A 145 ---QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKD 220 (235)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHTTSSEEEEEET
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-HHHhCCEEEEEEC
Confidence 59999999999999999999999999999998876666655555432 2455666778876 5589999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|+++..++.+++
T Consensus 221 G~i~~~~~~~~~ 232 (235)
T 3tif_A 221 GEVEREEKLRGF 232 (235)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEcChhhh
Confidence 999999987765
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=340.60 Aligned_cols=187 Identities=27% Similarity=0.363 Sum_probs=155.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------------CceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------------KNRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------------~~~~~v~q~d~~~~~ 227 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+. +..+||+|+..++++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 95 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH 95 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC
Confidence 469999999999999999999999999999999999988752 013789999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+.+..+... .+....++++++.+||.+..+.+++
T Consensus 96 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~--- 138 (372)
T 1g29_1 96 MTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR--- 138 (372)
T ss_dssp SCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG---
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCcc---
Confidence 999999999865432211 0122356778999999988887765
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|
T Consensus 139 --~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 216 (372)
T 1g29_1 139 --ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216 (372)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 59999999999999999999999999999998887666665555432 2456666789999999999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~l~ 228 (372)
T 1g29_1 217 VLQQVGSPDEVY 228 (372)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHH
Confidence 999999999885
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=322.60 Aligned_cols=188 Identities=25% Similarity=0.251 Sum_probs=154.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 107 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE 107 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999887521 1379999988889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|.....+... .+....++++++.+||.+..++.++ .||
T Consensus 108 nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 148 (256)
T 1vpl_A 108 YLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS-----TYS 148 (256)
T ss_dssp HHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----GCC
T ss_pred HHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----hCC
Confidence 9998654322110 0011245678999999988887765 499
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++..+||++++|++|++++.|
T Consensus 149 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g 228 (256)
T 1vpl_A 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 228 (256)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEec
Confidence 99999999999999999999999999998887766666655433 3566777788888899999999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++.+
T Consensus 229 ~~~~~~~ 235 (256)
T 1vpl_A 229 TVEELKE 235 (256)
T ss_dssp EHHHHHH
T ss_pred CHHHHHH
Confidence 9988754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=343.45 Aligned_cols=187 Identities=25% Similarity=0.324 Sum_probs=149.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+||+|+..+++++||+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 103 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN 103 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999987521 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..+.+++ .|||
T Consensus 104 i~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSG 144 (372)
T 1v43_A 104 IAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYPA-----QLSG 144 (372)
T ss_dssp HHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCTT-----TCCS
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCH
Confidence 999754322110 0122356778999999988887665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..|
T Consensus 145 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999998877666665555432 2456666789999999999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+++++.
T Consensus 225 ~~~~l~ 230 (372)
T 1v43_A 225 SPTEVY 230 (372)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999885
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=322.51 Aligned_cols=187 Identities=23% Similarity=0.284 Sum_probs=152.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC----------C----------------------ceeee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL----------K----------------------NRCDI 218 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~----------~----------------------~~~~v 218 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. . ..+|+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 98 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 98 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEE
Confidence 469999999999999999999999999999999999988751 1 13689
Q ss_pred cCCccccCCCCHHHHHHHHH-HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 219 SQHDVHIGEMTVRETLAFSA-RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
+|+..+++.+||+||+.|+. ...+... .+....++++++.+||.+
T Consensus 99 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~ 144 (262)
T 1b0u_A 99 FQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVGIDE 144 (262)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTTCCH
T ss_pred ecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCc
Confidence 99988899999999999863 2222110 011224567899999988
Q ss_pred c-ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh
Q 044321 298 C-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL 374 (521)
Q Consensus 298 ~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l 374 (521)
. .++.++ .|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+
T Consensus 145 ~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 219 (262)
T 1b0u_A 145 RAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 219 (262)
T ss_dssp HHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH
T ss_pred hhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 7 777665 49999999999999999999999999999998887666666555432 255566678888899999
Q ss_pred cCeEEEEeCCEEEEecCHhHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+|++|++|++++.|+++++.
T Consensus 220 ~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 220 SSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp CSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999998874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=316.26 Aligned_cols=182 Identities=23% Similarity=0.260 Sum_probs=147.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 4699999999999999999999999999999999999887510 13789999888899
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+....+... .+....++++++.+||.+..+..++
T Consensus 97 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY--- 139 (224)
T ss_dssp SCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG---
T ss_pred CCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh---
Confidence 999999998754322110 0012245678999999988887765
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+ .+||+|++|++|+
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 140 --ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGK 216 (224)
T ss_dssp --GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 49999999999999999999999999999998887766666655433 255666677887766 8999999999999
Q ss_pred EEEecCH
Q 044321 386 IVYQGPR 392 (521)
Q Consensus 386 iv~~G~~ 392 (521)
+++.|++
T Consensus 217 i~~~g~~ 223 (224)
T 2pcj_A 217 VVGEITR 223 (224)
T ss_dssp EEEEEEC
T ss_pred EEEEeee
Confidence 9999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=339.59 Aligned_cols=185 Identities=23% Similarity=0.293 Sum_probs=152.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCCCH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~lTV 230 (521)
+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+||+|+..+++.+||
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 99999999999999999999999999999999999887521 13789999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+.+..+... .+....++++++.+||.+..+.+++ .
T Consensus 100 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 100 FENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp HHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 999999764432210 0112356779999999988887765 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999987765554444443322 2455666788999999999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
..|+++++.
T Consensus 221 ~~g~~~~l~ 229 (353)
T 1oxx_K 221 QVGKPEDLY 229 (353)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999885
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=322.85 Aligned_cols=198 Identities=26% Similarity=0.338 Sum_probs=152.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+++|+||||+|++|++++|+||||||||||||+|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence 4699999999999999999999999999999999999987521 13789999888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+......+. ...+.. ... .. ...+....++++++.+||.+..++.++ .
T Consensus 100 ~enl~~~~~~~~~~~----~~~~~~----~~~-~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 153 (257)
T 1g6h_A 100 LENLLIGEICPGESP----LNSLFY----KKW-IP------------KEEEMVEKAFKILEFLKLSHLYDRKAG-----E 153 (257)
T ss_dssp HHHHHGGGTSTTSCH----HHHHHH----CSS-CC------------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHHHHHHhhhccCc----cccccc----ccc-cC------------CHHHHHHHHHHHHHHcCCchhhCCCch-----h
Confidence 999998643200000 000000 000 00 000112346778999999988887765 4
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||+|++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998887666666655433 35566667888888999999999999999999
Q ss_pred ecCHhH
Q 044321 389 QGPREY 394 (521)
Q Consensus 389 ~G~~~~ 394 (521)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999888
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=331.72 Aligned_cols=239 Identities=21% Similarity=0.257 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccc
Q 044321 85 QERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNIL 164 (521)
Q Consensus 85 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 164 (521)
+.....++|++++++..++. ...............|+|+||++.+.
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~~vs~~y~----------------------------- 64 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEV-----KDLPGAGPLRFQKGRIEFENVHFSYA----------------------------- 64 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSC-----CCCTTCBCCCCSSCCEEEEEEEEESS-----------------------------
T ss_pred HHHHHHHHHHHHHHhCCccc-----cccccccccCCCCCeEEEEEEEEEcC-----------------------------
Confidence 34456678888887654431 00001111122234699999998751
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHI 225 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~ 225 (521)
+...+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|+..+|
T Consensus 65 ----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf 140 (306)
T 3nh6_A 65 ----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140 (306)
T ss_dssp ----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC
T ss_pred ----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC
Confidence 224699999999999999999999999999999999999988621 138999987766
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
..||+||+.|+..... .+....+.... .. ...+. .++..++|.+|+
T Consensus 141 -~~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~-----~l-~~~i~--~lp~gl~t~~~~ 186 (306)
T 3nh6_A 141 -NDTIADNIRYGRVTAG-------------------------NDEVEAAAQAA-----GI-HDAIM--AFPEGYRTQVGE 186 (306)
T ss_dssp -SEEHHHHHHTTSTTCC-------------------------HHHHHHHHHHH-----TC-HHHHH--HSTTGGGCEEST
T ss_pred -cccHHHHHHhhcccCC-------------------------HHHHHHHHHHh-----Cc-HHHHH--hccchhhhHhcC
Confidence 5799999998642110 00000000000 00 11122 245567788875
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.+..|||||||||+|||||+.+|+||||||||+++|......+.+.+... .+.++|+++|+...+.. ||+|++|++|
T Consensus 187 -~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 187 -RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp -TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred -CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECC
Confidence 56689999999999999999999999999999988877666666655443 23455557788777765 9999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
+|++.|++++++.
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=316.29 Aligned_cols=186 Identities=23% Similarity=0.324 Sum_probs=149.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 4699999999999999999999999999999999999887521 14799999888899999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~r 309 (521)
+||+.|+.... ... .+....++.+++.++ |.+..++.++
T Consensus 99 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~~----- 138 (240)
T 1ji0_A 99 YENLMMGAYNR-KDK----------------------------------EGIKRDLEWIFSLFPRLKERLKQLGG----- 138 (240)
T ss_dssp HHHHHGGGTTC-CCS----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSS-----
T ss_pred HHHHHHhhhcC-CCH----------------------------------HHHHHHHHHHHHHcccHhhHhcCChh-----
Confidence 99998863111 000 011123456788884 8777766554
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++..+||+|++|++|+++
T Consensus 139 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 59999999999999999999999999999998887766666655433 3555666778888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 219 ~~g~~~~~~ 227 (240)
T 1ji0_A 219 LEGKASELL 227 (240)
T ss_dssp EEEEHHHHH
T ss_pred EEcCHHHHh
Confidence 999988774
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=310.49 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhc-cC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQ-GV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~-~~ 243 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||+.|+.... +.
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 97 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT 97 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCT
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccc
Confidence 4699999999999999999999999999999999999988632 3489999988888999999999864221 10
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.. ... .+....++.+++.+||.+..+..++ .|||||||||+|||
T Consensus 98 ~~-------------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 98 FA-------------------KPK------------SHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIAR 141 (253)
T ss_dssp TC-------------------CCC------------HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHH
T ss_pred cc-------------------CCC------------HHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHH
Confidence 00 000 0011245678999999988877665 59999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--C-CeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--E-GTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~-~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
||+.+|++|||||||+++|....+.+.+++.+. . +++||+++|+...+..+||+|++|++|+ ++.|+++++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999998887777666665443 2 5667777899888999999999999999 999998876
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=312.70 Aligned_cols=182 Identities=20% Similarity=0.253 Sum_probs=149.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+|+||||+|++ ++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||+.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 59999999999 99999999999999999999999887521 2378999988889999999999
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
|+....+. . . ....++++++.+||.+..+..++ .|||||
T Consensus 93 ~~~~~~~~--~--------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 131 (240)
T 2onk_A 93 YGLRNVER--V--------E--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTSCH--H--------H--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHHHcCC--c--------h--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 86432110 0 0 01245678999999988877765 499999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++..+||+|++|++|++++.|++
T Consensus 132 kqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 211 (240)
T 2onk_A 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999998887666666655432 245556667888889999999999999999999999
Q ss_pred hHHH
Q 044321 393 EYVL 396 (521)
Q Consensus 393 ~~v~ 396 (521)
+++.
T Consensus 212 ~~~~ 215 (240)
T 2onk_A 212 KELF 215 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=312.48 Aligned_cols=187 Identities=23% Similarity=0.298 Sum_probs=152.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCc-cccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHD-VHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d-~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++ ..++.+||+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 4699999999999999999999999999999999999987521 137899984 46778999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC--ccccccccCccCCCC
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD--VCADTMVGDEILRGI 311 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~r~L 311 (521)
+.|+.... ... .+....++.+++.+||. +..++.++ .|
T Consensus 100 l~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~L 139 (266)
T 2yz2_A 100 VAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVPF-----FL 139 (266)
T ss_dssp HHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCGG-----GS
T ss_pred HHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCChh-----hC
Confidence 98864211 100 01122456789999998 87777665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++|++++.
T Consensus 140 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998887777666665443 355666778888888899999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+++++..
T Consensus 220 g~~~~~~~ 227 (266)
T 2yz2_A 220 GTRMEFLE 227 (266)
T ss_dssp EEHHHHHH
T ss_pred CCHHHHhc
Confidence 99988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=307.53 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=143.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC--CCCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK--LDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~--l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+ ++|+.+ ..+|++|++.+++.+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 4699999999999999999999999999999999998 544310 125789998888999
Q ss_pred CHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC-CccccccccCc
Q 044321 229 TVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL-DVCADTMVGDE 306 (521)
Q Consensus 229 TV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg~~ 306 (521)
||+||+.+.... .+... .. .+....++.+++.+|| .+..++.++
T Consensus 96 tv~e~l~~~~~~~~~~~~---------------------~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 141 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREV---------------------GV-----------AEFWTKVKKALELLDWDESYLSRYLN-- 141 (250)
T ss_dssp BHHHHHHHHHHHHHTSCC---------------------CH-----------HHHHHHHHHHHHHHTCCGGGGGSBTT--
T ss_pred CHHHHHHHHHHhhccccC---------------------CH-----------HHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 999999886421 11000 00 0111245678999999 466766554
Q ss_pred cCCC-CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEe
Q 044321 307 ILRG-ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILIS 382 (521)
Q Consensus 307 ~~r~-LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~ 382 (521)
. |||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||+|++|+
T Consensus 142 ---~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~ 218 (250)
T 2d2e_A 142 ---EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMM 218 (250)
T ss_dssp ---CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEE
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEE
Confidence 5 9999999999999999999999999999999998888877776654 356677778888888878 59999999
Q ss_pred CCEEEEecCHhH
Q 044321 383 NGHIVYQGPREY 394 (521)
Q Consensus 383 ~G~iv~~G~~~~ 394 (521)
+|++++.|+++.
T Consensus 219 ~G~i~~~g~~~~ 230 (250)
T 2d2e_A 219 DGRVVATGGPEL 230 (250)
T ss_dssp TTEEEEEESHHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999873
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=305.60 Aligned_cols=183 Identities=24% Similarity=0.358 Sum_probs=139.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++ .||+
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 100 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSII 100 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHH
Confidence 4699999999999999999999999999999999999987521 1278999887765 6999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-------ccccc
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-------DTMVG 304 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-------dt~vg 304 (521)
||+.|+.. ... ...+..+++.+++.+.. ++.++
T Consensus 101 enl~~~~~--~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~~~~ 140 (247)
T 2ff7_A 101 DNISLANP--GMS--------------------------------------VEKVIYAAKLAGAHDFISELREGYNTIVG 140 (247)
T ss_dssp HHHTTTCT--TCC--------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGCBCS
T ss_pred HHHhccCC--CCC--------------------------------------HHHHHHHHHHhChHHHHHhCcchhhhhhh
Confidence 99987521 000 00122344444544332 33333
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+. .||+|++|++
T Consensus 141 -~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~ 218 (247)
T 2ff7_A 141 -EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEK 218 (247)
T ss_dssp -TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEET
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 345679999999999999999999999999999998887766666665443 3455666677776664 5999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 219 GKIVEQGKHKELL 231 (247)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999998874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=311.64 Aligned_cols=189 Identities=28% Similarity=0.320 Sum_probs=145.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC----------C-----------ceeeecCCcccc--CC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL----------K-----------NRCDISQHDVHI--GE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~----------~-----------~~~~v~q~d~~~--~~ 227 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. . ..+|++|+...+ +.
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG 113 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence 469999999999999999999999999999999999988751 1 136888875432 34
Q ss_pred CCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 228 MTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
+||+||+.|+.... +.. .... .+....++.+++.+||.+..++.++
T Consensus 114 ltv~enl~~~~~~~~~~~-------------------~~~~------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 160 (279)
T 2ihy_A 114 ERVIDVVISGAFKSIGVY-------------------QDID------------DEIRNEAHQLLKLVGMSAKAQQYIG-- 160 (279)
T ss_dssp SBHHHHHHTTC----------------------------CC------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred CCHHHHHHhhhhhccccc-------------------cCCc------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 69999998753110 000 0000 0112345678999999988887765
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEE-EEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTIL-ISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~i-i~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. +.|+. |+++|+..++..+||+|++|+
T Consensus 161 ---~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 161 ---YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 49999999999999999999999999999998877666655554332 44551 566788888889999999999
Q ss_pred CCEEEEecCHhHH
Q 044321 383 NGHIVYQGPREYV 395 (521)
Q Consensus 383 ~G~iv~~G~~~~v 395 (521)
+|++++.|+++++
T Consensus 238 ~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 238 DGQSIQQGAVEDI 250 (279)
T ss_dssp TTEEEEEEEHHHH
T ss_pred CCEEEEECCHHHH
Confidence 9999999998876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=304.76 Aligned_cols=203 Identities=21% Similarity=0.217 Sum_probs=155.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++ .|+.+ ..+|++|+..+++.+
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~ 112 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGV 112 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccc
Confidence 46999999999999999999999999999999999984 33210 136899998889999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
||.|++.+...... ...+. +.... .+....++++++.+||. ...++.++
T Consensus 113 tv~e~~~~~~~~~~---------------~~~~~-~~~~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~--- 162 (267)
T 2zu0_C 113 SNQFFLQTALNAVR---------------SYRGQ-ETLDR-----------FDFQDLMEEKIALLKMPEDLLTRSVN--- 162 (267)
T ss_dssp BHHHHHHHHHHHHH---------------HGGGC-CCCCH-----------HHHHHHHHHHHHHTTCCTTTTTSBTT---
T ss_pred cHHHHHHHHHHhhh---------------hhhcc-ccCCH-----------HHHHHHHHHHHHHcCCChhHhcCCcc---
Confidence 99999987531100 00000 00000 01123466789999996 45665543
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~G 384 (521)
..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||+|++|++|
T Consensus 163 -~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G 241 (267)
T 2zu0_C 163 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 241 (267)
T ss_dssp -TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETT
T ss_pred -cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECC
Confidence 149999999999999999999999999999999999888888887664 256677788888777776 8999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCC
Q 044321 385 HIVYQGPREYVLEFFKFMGFE 405 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~ 405 (521)
++++.|+++++.. ++..||.
T Consensus 242 ~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 242 RIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEEEECTTHHHH-HHTTTCT
T ss_pred EEEEEcCHHHHhh-hhhcchh
Confidence 9999999988753 4555554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=307.37 Aligned_cols=189 Identities=19% Similarity=0.288 Sum_probs=146.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++ .||+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 110 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFR 110 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHH
Confidence 4699999999999999999999999999999999999987521 1378999887766 6999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
||+.|+.... ... ..+.... ....++.+++.+ ||....+..+ .
T Consensus 111 enl~~~~~~~--~~~----~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~-----~ 155 (271)
T 2ixe_A 111 ENIAYGLTRT--PTM----EEITAVA------------------------MESGAHDFISGFPQGYDTEVGETG-----N 155 (271)
T ss_dssp HHHHTTCSSC--CCH----HHHHHHH------------------------HHHTCHHHHHHSTTGGGSBCCGGG-----T
T ss_pred HHHhhhcccC--ChH----HHHHHHH------------------------HHHhHHHHHHhhhcchhhhhcCCc-----C
Confidence 9998863210 000 0000000 001234567777 6766555544 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-C--CeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-E--GTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~--~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. . +++||+++|+...+. .||+|++|++|++
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i 234 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSV 234 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE
Confidence 69999999999999999999999999999999998888888877665 2 567777788887765 5999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 235 ~~~g~~~~l~ 244 (271)
T 2ixe_A 235 CEQGTHLQLM 244 (271)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=300.99 Aligned_cols=178 Identities=19% Similarity=0.140 Sum_probs=150.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------cee-eecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRC-DISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~-~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|+ |++++|+|||||||||||++|+|++ |+.+ ..+ |++|+..+ .+||+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~en 93 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHH
Confidence 469999999999 9999999999999999999999999 7521 135 88887655 8999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCC
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGIS 312 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LS 312 (521)
+.|...... .....++.+++.+||. +..++.++ .||
T Consensus 94 l~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----~LS 130 (263)
T 2pjz_A 94 VYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLY-----KLS 130 (263)
T ss_dssp HHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGG-----GSC
T ss_pred HHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChh-----hCC
Confidence 988642210 0012356688999998 87776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcC-eEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFD-DIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D-~VivL~~G~iv~~G~ 391 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+... ++++++|+...+..+|| ++++|++|++++.|+
T Consensus 131 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999988877655 66667888888889999 999999999999999
Q ss_pred HhHHH
Q 044321 392 REYVL 396 (521)
Q Consensus 392 ~~~v~ 396 (521)
++++.
T Consensus 210 ~~~l~ 214 (263)
T 2pjz_A 210 VSELL 214 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=334.86 Aligned_cols=241 Identities=19% Similarity=0.301 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+++|+.++++.+++. .+.......+.....++++|+++.+.
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 350 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYDI-----KNGVGAQPIEIKQGRIDIDHVSFQYN---------------------------- 350 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCSS-----CCCTTCCCCCCCSCCEEEEEEEECSC----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cCCCCccccCCCCCeEEEEEEEEEcC----------------------------
Confidence 567788899999998876641 01000011112234699999998752
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
.+..++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|++.+
T Consensus 351 ----~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 351 ----DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426 (578)
T ss_dssp ----SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC
T ss_pred ----CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc
Confidence 1224699999999999999999999999999999999999988621 13899998877
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.|+... .+.+...++....+ . ... .-.+++..+|.+|
T Consensus 427 ~~-~tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~-----~-~~~--~~~lp~g~~t~~~ 472 (578)
T 4a82_A 427 FS-DTVKENILLGRPT-------------------------ATDEEVVEAAKMAN-----A-HDF--IMNLPQGYDTEVG 472 (578)
T ss_dssp CS-SBHHHHHGGGCSS-------------------------CCHHHHHHHHHHTT-----C-HHH--HHTSTTGGGCBCC
T ss_pred Cc-ccHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC-----c-HHH--HHhCcchhhhhhc
Confidence 65 5999999885210 01111111111000 0 111 1246777889998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+ .+..|||||||||+|||||+.+|++|+|||||+++|....+.+.+.+... .+.++++++|+...+ ..||+|++|++
T Consensus 473 ~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~l~~ 550 (578)
T 4a82_A 473 E-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIEN 550 (578)
T ss_dssp G-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEET
T ss_pred c-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEEEEC
Confidence 5 56689999999999999999999999999999999887777777666443 334555567777665 56999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=302.30 Aligned_cols=179 Identities=25% Similarity=0.318 Sum_probs=149.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-------------------eeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-------------------RCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-------------------~~~v~q~d~~~~~lTV~E 232 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+ +. .+|++|+..+++.+||+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 4899999999999999999999999999999999999875 21 278999888888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+... .. . ...++.+++.+||.+..++.++ .||
T Consensus 93 ~l~~~~~~-~~-----------------------~---------------~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (249)
T 2qi9_C 93 YLTLHQHD-KT-----------------------R---------------TELLNDVAGALALDDKLGRSTN-----QLS 128 (249)
T ss_dssp HHHTTCSS-TT-----------------------C---------------HHHHHHHHHHTTCGGGTTSBGG-----GCC
T ss_pred HHHHhhcc-CC-----------------------c---------------HHHHHHHHHHcCChhHhcCChh-----hCC
Confidence 99875210 00 0 1134668899999888877665 599
Q ss_pred hHHHHHHHHHHHHcCCCc-------EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 313 GGQRKRVTTGEMLVGPAQ-------ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~-------iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|||||||+||+||+.+|+ +|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++
T Consensus 129 gGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKG 208 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999 99999999998887776666665443 355667778998888899999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|++++.|+++++
T Consensus 209 G~i~~~g~~~~~ 220 (249)
T 2qi9_C 209 GKMLASGRREEV 220 (249)
T ss_dssp TEEEEEEEHHHH
T ss_pred CEEEEeCCHHHH
Confidence 999999998876
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=333.08 Aligned_cols=241 Identities=20% Similarity=0.266 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+++|+.++++..++. .+.......+.+...|+|+|+++.+.
T Consensus 306 ~~~~~~s~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 352 (587)
T 3qf4_A 306 IVRASASAKRVLEVLNEKPAI-----EEADNALALPNVEGSVSFENVEFRYF---------------------------- 352 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCCSC-----CCCTTCBCCSCCCCCEEEEEEEECSS----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----CCCCCccccCCCCCcEEEEEEEEEcC----------------------------
Confidence 456778889999888765531 00000001111234699999998752
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
.+...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++.+
T Consensus 353 ----~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 353 ----ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ----SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred ----CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 1234699999999999999999999999999999999999988621 12899998877
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.|+... .+.+...++.... .. .+.+ -.+++..+|.+|
T Consensus 429 f~-~tv~eni~~~~~~-------------------------~~~~~~~~~~~~~-----~~-~~~i--~~l~~g~~~~~~ 474 (587)
T 3qf4_A 429 FS-GTIKENLKWGRED-------------------------ATDDEIVEAAKIA-----QI-HDFI--ISLPEGYDSRVE 474 (587)
T ss_dssp CS-EEHHHHHTTTCSS-------------------------CCHHHHHHHHHHT-----TC-HHHH--HTSSSGGGCEEC
T ss_pred cC-ccHHHHHhccCCC-------------------------CCHHHHHHHHHHh-----Cc-HHHH--HhcccchhhHhc
Confidence 64 6999999875311 0111111111000 01 1111 246677888887
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. .+.++++++|+...+ ..||+|++|++
T Consensus 475 ~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~-~~~d~i~vl~~ 552 (587)
T 3qf4_A 475 R-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA-LLADKILVLHE 552 (587)
T ss_dssp S-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHH-TTSSEEEEEET
T ss_pred C-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHH-HhCCEEEEEEC
Confidence 5 56789999999999999999999999999999998887777777666543 345555567777655 58999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=294.36 Aligned_cols=189 Identities=20% Similarity=0.251 Sum_probs=140.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|++.+++ .||+||+.|+...
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~---- 95 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSY---- 95 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCC----
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCc----
Confidence 4699999999999999999999999999999999999988632 2479999987776 5999999885311
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
... ... + ..+.. .....++. ++...++.++. .+..|||||||||+||||
T Consensus 96 ~~~----~~~--~-------------~~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~LSgGqkqrv~lAra 144 (229)
T 2pze_A 96 DEY----RYR--S-------------VIKAC---------QLEEDISK--FAEKDNIVLGE-GGITLSGGQRARISLARA 144 (229)
T ss_dssp CHH----HHH--H-------------HHHHT---------TCHHHHTT--STTGGGSCBCT-TCTTSCHHHHHHHHHHHH
T ss_pred ChH----HHH--H-------------HHHHh---------CcHHHHHh--CcccccccccC-CCCcCCHHHHHHHHHHHH
Confidence 000 000 0 00000 00111221 22233444443 456899999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHH-HHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQF-IHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+.+|++|||||||+++|....+.+.++ +... .++++|+++|+...+. .||+|++|++|++++.|+++++.
T Consensus 145 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 145 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999998888875 3222 3456666778876664 69999999999999999998874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=321.60 Aligned_cols=195 Identities=22% Similarity=0.194 Sum_probs=151.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-------------------CceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV 230 (521)
...+|+||||+|++||+++|+|||||||||||++|+|+++ +. ...+||+|+..+|+ +||
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv 110 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTF 110 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEH
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCH
Confidence 3469999999999999999999999999999999999875 31 12379999887776 799
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC-----
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD----- 305 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~----- 305 (521)
+||+.+... . ....+.++++.+||.+..+.++..
T Consensus 111 ~enl~~~~~---~--------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~~i 149 (390)
T 3gd7_A 111 RKNLDPNAA---H--------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDFVL 149 (390)
T ss_dssp HHHHCTTCC---S--------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred HHHhhhccc---c--------------------------------------CHHHHHHHHHHhCCHHHHhhccccccccc
Confidence 999864210 0 011244577788887666554432
Q ss_pred -ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 -EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 -~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+....|||||||||+|||||+.+|++|||||||+++|......+++.+++. .++++|++||+. ++...||+|++|++
T Consensus 150 ~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~-e~~~~aDri~vl~~ 228 (390)
T 3gd7_A 150 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQFLVIEE 228 (390)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSS-GGGTTCSEEEEEET
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCH-HHHHhCCEEEEEEC
Confidence 223449999999999999999999999999999999998888888877654 345666677775 45567999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|+|+..|+++++.. .|....+++|+
T Consensus 229 G~i~~~g~~~el~~--------~p~~~~va~f~ 253 (390)
T 3gd7_A 229 NKVRQYDSILELYH--------YPADRFVAGFI 253 (390)
T ss_dssp TEEEEESSHHHHHH--------CCSBHHHHHHS
T ss_pred CEEEEECCHHHHHh--------CCCchHHHhhc
Confidence 99999999999853 45555555554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=302.83 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=140.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++ .||
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv 92 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTI 92 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEH
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccH
Confidence 34699999999999999999999999999999999999887521 1378999887665 699
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc------
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG------ 304 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg------ 304 (521)
+||+.|+... .. . ...+..+++.+++.+..+..+.
T Consensus 93 ~enl~~~~~~-~~-----------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 93 RENLTYGLEG-DY-----------------------T---------------DEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp HHHTTSCTTS-CS-----------------------C---------------HHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred HHHHhhhccC-CC-----------------------C---------------HHHHHHHHHHhChHHHHHhCccchhchh
Confidence 9999875210 00 0 0123456777787765544321
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
++.+..|||||||||+|||||+.+|++|||||||+++|.. +.+.|+++. .+++||+++|+...+ ..||+|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~vtH~~~~~-~~~d~v~~ 209 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTI-VDADKIYF 209 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHH-HHCSEEEE
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCChHHH-HhCCEEEE
Confidence 2345689999999999999999999999999999987764 555555543 245556667777666 46999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 210 IEKGQITGSGKHNELV 225 (243)
T ss_dssp EETTEECCCSCHHHHH
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998875
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=299.11 Aligned_cols=184 Identities=22% Similarity=0.265 Sum_probs=141.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------------------CceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------------------~~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++++.. ...+|++|+..+++ .||+|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKY 111 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHH
Confidence 369999999999999999999999999999999999987521 01378999887765 69999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-------CCCccccccccC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-------GLDVCADTMVGD 305 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-------gL~~~~dt~vg~ 305 (521)
|+.|+.. .. .. + .+..+++.+ ++++..++.++.
T Consensus 112 nl~~~~~--~~-~~----------------------~---------------~~~~~l~~~~l~~~~~~l~~~~~~~~~~ 151 (260)
T 2ghi_A 112 NILYGKL--DA-TD----------------------E---------------EVIKATKSAQLYDFIEALPKKWDTIVGN 151 (260)
T ss_dssp HHHTTCT--TC-CH----------------------H---------------HHHHHHHHTTCHHHHHTSTTGGGCEESS
T ss_pred HHhccCC--CC-CH----------------------H---------------HHHHHHHHhCCHHHHHhccccccccccC
Confidence 9987521 00 00 0 011223333 345556666653
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.+..|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+ ..||+|++|++|
T Consensus 152 -~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~-~~~d~i~~l~~G 229 (260)
T 2ghi_A 152 -KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI-SSAESIILLNKG 229 (260)
T ss_dssp -SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS-TTCSEEEEEETT
T ss_pred -CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-HhCCEEEEEECC
Confidence 56789999999999999999999999999999999988877777766544 345666677777665 469999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++++.|+++++..
T Consensus 230 ~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 230 KIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999988753
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=296.54 Aligned_cols=188 Identities=21% Similarity=0.254 Sum_probs=140.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++. ++.+||+||+.|+.... .
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~--~ 94 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLE--E 94 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCC--T
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccC--H
Confidence 4699999999999999999999999999999999999987532 2478999865 56899999998853210 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.. .....+ ...+++.+++. ...++.++ +.+..|||||||||+|||
T Consensus 95 ~~---------------------~~~~~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAr 140 (237)
T 2cbz_A 95 PY---------------------YRSVIQ------------ACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLAR 140 (237)
T ss_dssp TH---------------------HHHHHH------------HTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHH
T ss_pred HH---------------------HHHHHH------------HHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHH
Confidence 00 000000 00012233332 22233343 356679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHH---H-cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIH---I-LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~---~-~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+.+|++|||||||+++|......+.+++. . ..++++|+++|+...+ ..||+|++|++|++++.|+++++.
T Consensus 141 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 141 AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999998888877662 2 1345666667777665 579999999999999999998875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=324.50 Aligned_cols=231 Identities=19% Similarity=0.252 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++....++|+.++++.+++. +....+.+ ...++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~---------~~~~~~~~~~~~~i~~~~v~~~y~~------------------------- 353 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER---------DNGKYEAERVNGEVDVKDVTFTYQG------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC---------CCCCCCCCCCCCeEEEEEEEEEcCC-------------------------
Confidence 567778899999998876542 00011111 236899999998620
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
+.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 354 -------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 354 -------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred -------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence 113699999999999999999999999999999999999988632 137999988
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-------C
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-------L 295 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L 295 (521)
.+++ .||+||+.++.. ... +.+ .++++++.+| +
T Consensus 427 ~l~~-~tv~eni~~~~~-~~~-----------------------~~~---------------~~~~~~~~~~l~~~~~~~ 466 (582)
T 3b5x_A 427 HLFN-DTIANNIAYAAE-GEY-----------------------TRE---------------QIEQAARQAHAMEFIENM 466 (582)
T ss_pred cccc-ccHHHHHhccCC-CCC-----------------------CHH---------------HHHHHHHHCCCHHHHHhC
Confidence 7775 599999988531 000 000 1122223333 4
Q ss_pred CccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhh
Q 044321 296 DVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDL 374 (521)
Q Consensus 296 ~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l 374 (521)
++..||.+|+ .+..|||||||||+|||||+.+|++|+|||||+++|....+.+.+.+.+. ++.++++++|+...+ ..
T Consensus 467 p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~ 544 (582)
T 3b5x_A 467 PQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI-EQ 544 (582)
T ss_pred cccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-Hh
Confidence 4567888875 46789999999999999999999999999999999888777777666543 344555556766555 57
Q ss_pred cCeEEEEeCCEEEEecCHhHHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
||+|++|++|++++.|+++++.+
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 545 ADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998853
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=328.73 Aligned_cols=237 Identities=23% Similarity=0.299 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++...+++|+.++++.+++. + ...+.+. ...+++|+||++.+.
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~--~~~~~~~~~~~~~i~~~~v~~~y~-------------------------- 365 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------D--DPDAVELREVRGEIEFKNVWFSYD-------------------------- 365 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------C--CSSCCCCCSCCCCEEEEEEECCSS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------C--CCCCCCCCCCCCeEEEEEEEEECC--------------------------
Confidence 566778899999998776541 0 0111122 234688999887641
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
+...+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 366 -------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 366 -------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp -------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred -------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 223699999999999999999999999999999999999988631 138999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.++ ..||+||+.++.... +.+...++....+ .+..++ .+++..+|.
T Consensus 439 ~lf-~~tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~~~--~~~~g~~t~ 484 (598)
T 3qf4_B 439 ILF-STTVKENLKYGNPGA-------------------------TDEEIKEAAKLTH------SDHFIK--HLPEGYETV 484 (598)
T ss_dssp CCC-SSBHHHHHHSSSTTC-------------------------CTTHHHHHTTTTT------CHHHHH--TSTTGGGCB
T ss_pred ccc-cccHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------CHHHHH--hccccccch
Confidence 766 569999998752100 0011111111000 111222 356678888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. .+.++++++|+...+. .||+|++|
T Consensus 485 ~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l 562 (598)
T 3qf4_B 485 LTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLIIVL 562 (598)
T ss_dssp CHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHH-HCSEEEEE
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEE
Confidence 875 55679999999999999999999999999999998877666666555433 3445555667766654 59999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++.+
T Consensus 563 ~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 563 RDGEIVEMGKHDELIQ 578 (598)
T ss_dssp CSSSEEECSCHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=320.30 Aligned_cols=231 Identities=18% Similarity=0.261 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++....++|+.++++.+++. +..+.+.+ ...++++|+++.+.
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~---------~~~~~~~~~~~~~i~~~~v~~~y~-------------------------- 352 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEK---------DEGKRVIDRATGDLEFRNVTFTYP-------------------------- 352 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC---------CCCCBCCSCCCCCEEEEEEEECSS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCc---------cCCCCCCCCCCCcEEEEEEEEEcC--------------------------
Confidence 566778888988888765541 01111222 23588999888741
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
.+.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 353 ------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b60_A 353 ------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426 (582)
T ss_dssp ------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred ------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCC
Confidence 0114699999999999999999999999999999999999988621 137999988
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-------C
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-------L 295 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L 295 (521)
.+++ .||+||+.|+.. ... +.+. +.++++.+| +
T Consensus 427 ~l~~-~tv~eni~~~~~-~~~-----------------------~~~~---------------~~~~l~~~~l~~~~~~~ 466 (582)
T 3b60_A 427 HLFN-DTVANNIAYART-EEY-----------------------SREQ---------------IEEAARMAYAMDFINKM 466 (582)
T ss_dssp CCCS-SBHHHHHHTTTT-SCC-----------------------CHHH---------------HHHHHHTTTCHHHHHHS
T ss_pred cCCC-CCHHHHHhccCC-CCC-----------------------CHHH---------------HHHHHHHcCCHHHHHhc
Confidence 7776 599999998531 000 0011 112222222 4
Q ss_pred CccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhh
Q 044321 296 DVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDL 374 (521)
Q Consensus 296 ~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l 374 (521)
++..||.+|+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. ++.++++++|+...+ ..
T Consensus 467 p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~ 544 (582)
T 3b60_A 467 DNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQ 544 (582)
T ss_dssp TTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-TT
T ss_pred cccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-Hh
Confidence 5567888875 56789999999999999999999999999999998887766666655443 344555566776655 57
Q ss_pred cCeEEEEeCCEEEEecCHhHHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
||+|++|++|++++.|+++++.+
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 545 ADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999998854
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=350.97 Aligned_cols=243 Identities=21% Similarity=0.261 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+.....++|+.++++..++. .+. ...+...| ..+|+|+||+|.|.
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~g~I~f~nVsf~Y~--------------------------- 1087 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISKI-----DSL-SLAGEKKKLYGKVIFKNVRFAYP--------------------------- 1087 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCSS-----CTT-CCCSBCCCCCCCEEEEEEEECCT---------------------------
T ss_pred HHHHHHHHHHHHHHhhCcccC-----CCc-cCCCCCCCCCCeEEEEEEEEeCC---------------------------
Confidence 566778899999998876651 110 11111122 34799999999862
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
.....+||+||||+|+|||.+||+||||||||||+++|.|+++|..+ ..++|+|++.
T Consensus 1088 ----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~ 1163 (1321)
T 4f4c_A 1088 ----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT 1163 (1321)
T ss_dssp ----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC
T ss_pred ----CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE
Confidence 11234699999999999999999999999999999999999998632 1289999876
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| ..|++|||.|+..- ++.+.+.+.+++...+ ..+.+ -.|++.+||.|
T Consensus 1164 LF-~gTIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~-----l~~~I---~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1164 LF-DCSIAENIIYGLDP-----------------------SSVTMAQVEEAARLAN-----IHNFI---AELPEGFETRV 1211 (1321)
T ss_dssp CC-SEEHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTT-----CHHHH---HTSTTTTCSEE
T ss_pred ee-CccHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhC-----ChHHH---HcCcCCCCCEe
Confidence 55 57999999876311 1112223333322221 11222 25788999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|+ .+..||||||||++|||||+++|+||||||||+++|.+.-+.+.+.+++. ++.|+|+++|.. .+...||+|+||+
T Consensus 1212 ge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL-sTi~~aD~I~Vld 1289 (1321)
T 4f4c_A 1212 GD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL-NTVMNADCIAVVS 1289 (1321)
T ss_dssp TT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS-STTTTCSEEEEES
T ss_pred cC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH-HHHHhCCEEEEEE
Confidence 97 45679999999999999999999999999999998887777777766543 344444455654 4566799999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|+|+++|+|+++++
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999974
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=347.29 Aligned_cols=238 Identities=20% Similarity=0.246 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++...+++|+.++++..++. ... ...+...+ ..+|+|+|++|.|..
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPVI-----DSS-SKAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCCS-----SCS-SSCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCccc-----ccc-ccccccCCCCCCcEEEEEeeeeCCC-------------------------
Confidence 567788899999998876541 111 11222222 347999999998631
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+.++|+||||+|++|++++|+||||||||||+++|.|+++|..+ ..+||+|++
T Consensus 428 ------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 428 ------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp ------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred ------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 1234799999999999999999999999999999999999998631 138999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+ ++.|++|||.|+. ++.+.+.+.+++...+ ..+.+. .|++..||.
T Consensus 502 ~L-f~~TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~-----l~~~i~---~lp~G~~T~ 547 (1321)
T 4f4c_A 502 AL-FNCTIEENISLGK-------------------------EGITREEMVAACKMAN-----AEKFIK---TLPNGYNTL 547 (1321)
T ss_dssp CC-CSEEHHHHHHTTC-------------------------TTCCHHHHHHHHHHTT-----CHHHHH---HSTTTTSSE
T ss_pred ee-eCCchhHHHhhhc-------------------------ccchHHHHHHHHHHcc-----chhHHH---cCCCCCccE
Confidence 55 5689999999863 1222333333333221 112222 378999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~V 378 (521)
||+. +..||||||||++|||||+.+|+||||||||+++|.+ +.+.|.++. .++|+|+++|+ . .+...||+|
T Consensus 548 vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHr-l-s~i~~aD~I 622 (1321)
T 4f4c_A 548 VGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHR-L-STIRNADLI 622 (1321)
T ss_dssp ESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSC-T-TTTTTCSEE
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEccc-H-HHHHhCCEE
Confidence 9974 4579999999999999999999999999999976654 444454443 25666665544 3 466789999
Q ss_pred EEEeCCEEEEecCHhHHHH
Q 044321 379 ILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 379 ivL~~G~iv~~G~~~~v~~ 397 (521)
++|++|+|+++|+++++++
T Consensus 623 ivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 623 ISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEETTEEEEEECHHHHHT
T ss_pred EEeeCCeeeccCCHHHHHH
Confidence 9999999999999999863
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=287.18 Aligned_cols=172 Identities=19% Similarity=0.169 Sum_probs=131.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAFS 237 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f~ 237 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||+.|+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 699999999999999999999999999999999999987521 137899998888899999999986
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
....+. . .+ ...++++++.+||.+. +..+. .|||||||
T Consensus 103 ~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqkq 140 (214)
T 1sgw_A 103 ASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKKLG-----ELSQGTIR 140 (214)
T ss_dssp HHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHHH
T ss_pred HHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCChh-----hCCHHHHH
Confidence 432110 0 00 1235668899999876 65554 59999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++..+||+|+++ .|+|
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999999987765544444443322 2345556678888888888887755 3444
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=286.62 Aligned_cols=187 Identities=19% Similarity=0.242 Sum_probs=136.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++ .||+||+. +... .
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~-~~~~---~- 125 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENII-GVSY---D- 125 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHH-TTCC---C-
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhh-Cccc---c-
Confidence 589999999999999999999999999999999999987521 2479999887776 59999997 3210 0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
.. .... ..+.. .....++. +....++.++. .+..|||||||||+|||||
T Consensus 126 ~~----~~~~---------------~~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL 174 (290)
T 2bbs_A 126 EY----RYRS---------------VIKAC---------QLEEDISK--FAEKDNIVLGE-GGITLSGGQRARISLARAV 174 (290)
T ss_dssp HH----HHHH---------------HHHHT---------TCHHHHHT--STTGGGCBC-----CCCCHHHHHHHHHHHHH
T ss_pred hH----HHHH---------------HHHHh---------ChHHHHHh--ccccccchhcC-ccCcCCHHHHHHHHHHHHH
Confidence 00 0000 00000 00112222 22233444442 4567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHH-HHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFI-HIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~-~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+.+|++|||||||+++|....+.+.+++ ... .+++||+++|+...+ ..||+|++|++|++++.|+++++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999988888752 222 345666677887666 469999999999999999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=334.04 Aligned_cols=241 Identities=20% Similarity=0.239 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+.....++|+.++++..++. .. ....+..+ ...+|+|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~-----~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSI-----DS-FSKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCC-----SS-CCSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----Cc-ccccCCCCCCCCCeEEEEEEEEEcCC-------------------------
Confidence 456667788888888765541 00 00111122 1347999999998621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 400 ------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 400 ------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp ------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred ------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 1224699999999999999999999999999999999999988631 138999998
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+++ .||+||+.|+... .+.+...++..... ....++ .|++..||.
T Consensus 474 ~l~~-~ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~------~~~~i~--~l~~g~~t~ 519 (1284)
T 3g5u_A 474 VLFA-TTIAENIRYGRED-------------------------VTMDEIEKAVKEAN------AYDFIM--KLPHQFDTL 519 (1284)
T ss_dssp CCCS-SCHHHHHHHHCSS-------------------------CCHHHHHHHHHHTT------CHHHHH--HSTTGGGCC
T ss_pred ccCC-ccHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC------cHHHHH--hcccccccc
Confidence 7765 5999999987321 01111111111110 111222 367788999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+.+|||||||||+|||||+.+|+||||||||+++|.+..+.+.+.+... .+.++|+++|+...+. .||+|++|
T Consensus 520 ~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~-~~d~i~vl 597 (1284)
T 3g5u_A 520 VGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR-NADVIAGF 597 (1284)
T ss_dssp CSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT-TCSEEEEC
T ss_pred ccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEE
Confidence 986 55689999999999999999999999999999998887776666655432 3455566678777665 59999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++++
T Consensus 598 ~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 598 DGGVIVEQGNHDELMR 613 (1284)
T ss_dssp SSSCCCCEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999863
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-32 Score=326.59 Aligned_cols=243 Identities=20% Similarity=0.278 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+......+|+.++++..++. .. ....+... ....|+|+||++.|..
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~~-----~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 1042 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPEI-----DS-YSTQGLKPNMLEGNVQFSGVVFNYPT------------------------- 1042 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCSS-----SS-CCSSCCCTTTTSCCEEEEEEEBCCSC-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cc-cccccccccCCCCcEEEEEEEEECCC-------------------------
Confidence 345677888998888766541 00 00111111 1346999999987621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 1043 ------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1043 ------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp ------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC
T ss_pred ------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC
Confidence 1123589999999999999999999999999999999999987521 238999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.++ ..||+||+.++...... +.+...++.... ..... .-.+++.+||.
T Consensus 1117 ~l~-~~ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~------~~~~~--i~~l~~gldt~ 1164 (1284)
T 3g5u_A 1117 ILF-DCSIAENIAYGDNSRVV-----------------------SYEEIVRAAKEA------NIHQF--IDSLPDKYNTR 1164 (1284)
T ss_dssp CCC-SSBHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHH------TCHHH--HSSTTTGGGCB
T ss_pred ccc-cccHHHHHhccCCCCCC-----------------------CHHHHHHHHHHh------CcHHH--HHhCccccccc
Confidence 654 68999999875321111 111111111000 01111 12467889999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+..|||||||||+|||||+.+|+||||||||+++|....+.+.+.+... ++.++++++|+...+ ..||+|++|
T Consensus 1165 vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~vl 1242 (1284)
T 3g5u_A 1165 VGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVI 1242 (1284)
T ss_dssp CST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEEE
T ss_pred cCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEEE
Confidence 996 56689999999999999999999999999999998888777777766543 344555667777766 559999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|+++++++
T Consensus 1243 ~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1243 QNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp ETBEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=290.84 Aligned_cols=183 Identities=24% Similarity=0.191 Sum_probs=147.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..|+++||+|++||+++|+|||||||||||++|+|++.|+.+ ..+|++|+....+.+||.|++.+....
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~----- 444 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSS----- 444 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH-----
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhcc-----
Confidence 368999999999999999999999999999999999887632 248999987777889998887653100
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
... ....++.+|+.+||.+..++.++ .|||||||||+||+||
T Consensus 445 ------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL 486 (607)
T 3bk7_A 445 ------KLN---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATL 486 (607)
T ss_dssp ------HHH---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred ------CCC---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHH
Confidence 000 01234668899999888877765 4999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHhHHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPREYVLE 397 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~~v~~ 397 (521)
+.+|++|||||||+++|......+.++++.+ .+.++|+++|+..++..+||+|++|++ |+++..|++++++.
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999998887666555554432 355666678999999999999999986 88899999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=287.56 Aligned_cols=183 Identities=23% Similarity=0.186 Sum_probs=146.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..|+++||+|++||+++|+|||||||||||++|+|+++|..+ ..+|++|+....+.+||.|++.......
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~---- 375 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASK---- 375 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHH----
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccC----
Confidence 368999999999999999999999999999999999887532 2479999877778899988775421000
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
.. ....++.+++.+||.+..++.++ .|||||||||+||++|
T Consensus 376 -------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 376 -------LN---------------------------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATL 416 (538)
T ss_dssp -------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred -------CC---------------------------HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 00 01134567888999877777665 4999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHhHHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPREYVLE 397 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~~v~~ 397 (521)
+.+|++|||||||+++|......+.+++.++ .+.+||+++|+..++..+||+|++|++ |+++..|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999998887666665554432 245566678999999999999999986 88999999988765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=291.99 Aligned_cols=183 Identities=23% Similarity=0.170 Sum_probs=145.0
Q ss_pred ceeeeeeEEEEeCC-----cEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHH
Q 044321 171 LTILKDVSGIIRPG-----RMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSAR 239 (521)
Q Consensus 171 ~~iL~dVS~~I~~G-----e~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~ 239 (521)
..+++|+||++.+| |+++|+|||||||||||++|+|+++|+.+ ..+|++|+.......||.+++.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhh
Confidence 45889999999999 78999999999999999999999988643 24788998666667899997643211
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV 319 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRv 319 (521)
.... ....++.+++.+||.+..++.++ .|||||||||
T Consensus 440 --~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv 476 (608)
T 3j16_B 440 --GQFL------------------------------------NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRV 476 (608)
T ss_dssp --STTT------------------------------------SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHH
T ss_pred --cccc------------------------------------cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHH
Confidence 0000 01134567889999988877665 5999999999
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHh
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPRE 393 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~ 393 (521)
+||+||+.+|++|||||||+++|...... |+++..+. +.+|++++|+.+++..+||+|++|++ |++++.|+++
T Consensus 477 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 99999999999999999999988755544 44443322 45566678999999999999999996 9999999998
Q ss_pred HHHH
Q 044321 394 YVLE 397 (521)
Q Consensus 394 ~v~~ 397 (521)
+++.
T Consensus 556 ~~~~ 559 (608)
T 3j16_B 556 SLLT 559 (608)
T ss_dssp EHHH
T ss_pred HHhh
Confidence 8864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=292.62 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=147.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh-CCCCC----CCCceeeecCCc-cccCCCCHHHHHHHHHHhccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA-GKLDS----SLKNRCDISQHD-VHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La-G~l~~----~~~~~~~v~q~d-~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+ |.+.. .....+|++|+. ..++.+||.|++.+ ...+.
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~ 524 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT 524 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHH--hhcCH
Confidence 347999999999999999999999999999999998 43311 111246787763 56788999999865 11000
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
...+..+|+.+||. +..++.++ .|||||||||+||
T Consensus 525 ---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLA 560 (986)
T 2iw3_A 525 ---------------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALA 560 (986)
T ss_dssp ---------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHH
Confidence 11346688999995 56676665 4999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVLE 397 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~~ 397 (521)
+||+.+|++|||||||+++|....+.|.+++.. .++++|+++|+...+..+||+|++|++|+++ +.|+++++..
T Consensus 561 rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988877 5667777889999999999999999999997 7899988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=281.70 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=141.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
..|+++||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+....+.+||.+++.+..... .
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~- 359 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDA-L- 359 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSST-T-
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhc-c-
Confidence 357778889999999999999999999999999999988632 2378888766666899999987631100 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
.. ....++.+++.+||.+..++.++ .|||||||||+||||
T Consensus 360 ------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 360 ------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAAT 399 (538)
T ss_dssp ------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHH
T ss_pred ------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHH
Confidence 00 01134567888999888877765 499999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHhHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPREYVL 396 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~~v~ 396 (521)
|+.+|++|||||||+++|......+.++++++ .+++|++++|+..++..+||+|++|++ |.+...+++..+.
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999988876555544444332 356667778999999999999999986 6667777765543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=274.08 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=121.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcc--ccCCCCHHHHHH-HHHHhccC---ch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV--HIGEMTVRETLA-FSARCQGV---GS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~--~~~~lTV~E~l~-f~~~~~~~---~~ 245 (521)
.+|+||| +|++||+++|+||||||||||||+|+|++.|+.+. ........ .+....+..... .......+ .+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG-DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-cCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4899999 99999999999999999999999999999876422 00000000 011111111000 00000000 00
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
........ .. ......... .+....++++|+.+||.+..++.++ .|||||||||+||+||
T Consensus 114 ~~~~~~~~---------~~-~~v~e~~~~-----~~~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL 173 (538)
T 1yqt_A 114 YVDLIPKA---------VK-GKVIELLKK-----ADETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAAL 173 (538)
T ss_dssp CGGGSGGG---------CC-SBHHHHHHH-----HCSSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred hhhhcchh---------hh-ccHHHHHhh-----hhHHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 00000000 00 011111100 1112356789999999888777765 4999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|++|||||||+++|......+.++++.+ .+++||+++|+..++..+||+|++|++|
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999887555444444322 3556667789999999999999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=282.25 Aligned_cols=195 Identities=23% Similarity=0.240 Sum_probs=117.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHH---------------------HHHhCCCCCCCC------ce-------
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLL---------------------LALAGKLDSSLK------NR------- 215 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLL---------------------k~LaG~l~~~~~------~~------- 215 (521)
..++|+||||+|++|++++|+||||||||||+ ++++|+..|+.+ ..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777666521 00
Q ss_pred ---------eeecCCcc-------------------ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCC
Q 044321 216 ---------CDISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPD 267 (521)
Q Consensus 216 ---------~~v~q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~ 267 (521)
++++|... .++.+||.||+.+....... .... .
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~--------~ 170 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEA--------Q 170 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhh--------H
Confidence 22333211 12346677776653211000 0000 0
Q ss_pred hHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHH
Q 044321 268 IDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQ 344 (521)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~ 344 (521)
. ......+.... ..+++.+||.+. .++.++ .|||||||||+|||||+.+|+ +|||||||+++|..
T Consensus 171 ~------~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 171 I------ARLILREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred H------HHHHHHHHHHH-HHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 0 00000001111 235888999764 566665 499999999999999999998 99999999987765
Q ss_pred HHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 345 IVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 345 i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
....|.++++.+ .+.+||+++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 554444444322 355666678888754 569999999 899999999998875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=274.52 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=122.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcc--ccCCCCHHHHHH-HHHHhccC---ch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV--HIGEMTVRETLA-FSARCQGV---GS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~--~~~~lTV~E~l~-f~~~~~~~---~~ 245 (521)
.+|+||| +|++||+++|+|||||||||||++|+|++.|+.+. ........ .+....+..... .......+ .+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT-TCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc-cccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4899999 99999999999999999999999999999886432 00000000 111111111000 00000000 00
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
....... ... ......... .+....++++|+.+||.+..++.+++ |||||||||+||+||
T Consensus 184 ~~~~~~~---------~~~-~tv~e~l~~-----~~~~~~~~~~L~~lgL~~~~~~~~~~-----LSGGekQRvaIAraL 243 (607)
T 3bk7_A 184 YVDLLPK---------AVK-GKVRELLKK-----VDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAAL 243 (607)
T ss_dssp CGGGGGG---------TCC-SBHHHHHHH-----TCCSSCHHHHHHHTTCTTGGGSBGGG-----CCHHHHHHHHHHHHH
T ss_pred hhhhchh---------hcc-ccHHHHhhh-----hHHHHHHHHHHHHcCCCchhCCChhh-----CCHHHHHHHHHHHHH
Confidence 0000000 000 011111100 11123567899999999888877764 999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|++|||||||+++|......+.++++.+ .+++||+++|+...+..+||+|++|+++
T Consensus 244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999998887555544444332 3566677788998899999999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-29 Score=283.34 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=143.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccc----cCCCCHHHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVH----IGEMTVRETLAFSA 238 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~----~~~lTV~E~l~f~~ 238 (521)
+.+|+||||+|++|++++|+||||||||||||+|+|++.|+.+ ..+|++|+..+ ....|+.+++.+..
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~ 765 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHh
Confidence 5799999999999999999999999999999999999987631 12577776421 13478999887643
Q ss_pred Hhcc-----------Cc--h------------------------------hhH--------------HHHHHHHHHHhcC
Q 044321 239 RCQG-----------VG--S------------------------------RYE--------------MLAELTRREKAAG 261 (521)
Q Consensus 239 ~~~~-----------~~--~------------------------------~~~--------------~~~~l~~~e~~~~ 261 (521)
.... .. . .++ .+..++..+..
T Consensus 766 q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~-- 843 (986)
T 2iw3_A 766 QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA-- 843 (986)
T ss_dssp TTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCE--
T ss_pred hccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhh--
Confidence 2100 00 0 000 00000000000
Q ss_pred CCCCCCh-HHHHHH---------H--hhhchhhhhHHHHHHHHcCCCcc--ccccccCccCCCCChHHHHHHHHHHHHcC
Q 044321 262 IKPDPDI-DVFMKA---------A--ATEGQEVSVITDYILKILGLDVC--ADTMVGDEILRGISGGQRKRVTTGEMLVG 327 (521)
Q Consensus 262 i~~~~~~-~~~~~~---------~--~~~~~~~~~~~~~iL~~lgL~~~--~dt~vg~~~~r~LSGGqrQRvaIAraLv~ 327 (521)
..+.... ..+.+. . ..........++.+|+.+||... .+..++ +|||||||||+||++|+.
T Consensus 844 ~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~ 918 (986)
T 2iw3_A 844 WIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQ 918 (986)
T ss_dssp EEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTT
T ss_pred hhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCcc-----ccCHHHHHHHHHHHHHHh
Confidence 0000000 000000 0 00011223456789999999752 455554 599999999999999999
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
+|++|||||||+++|......+.+.+.+.++ +||+++|+.+.+..+||+|++|++|+++..|+
T Consensus 919 ~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~-tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 919 RPHLIVLDEPTNYLDRDSLGALSKALKEFEG-GVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCSEEEEECGGGTCCHHHHHHHHHHHHSCSS-EEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHhCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999988877665 56667888888999999999999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-28 Score=270.93 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
..+.+..+||.. ..+..+ ..|||||||||+|||||+.+| ++|||||||+++|......+.++++++ .+.
T Consensus 523 ~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~ 597 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 345678889864 345444 459999999999999999876 599999999998776655555554332 355
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
+||+++|+...+ ..||+|++| ++|+|++.|+++++.
T Consensus 598 tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 666678888765 679999999 899999999999984
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=261.35 Aligned_cols=201 Identities=22% Similarity=0.223 Sum_probs=128.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
.....|++++ .+++|++++|+||||||||||||+|+|++.|+.+. +... ....+.+.+ ..+... ..
T Consensus 89 ~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~---i~~~------~~~~~~~~~---~~g~~~-~~ 154 (608)
T 3j16_B 89 ANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR---FDDP------PEWQEIIKY---FRGSEL-QN 154 (608)
T ss_dssp TTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT---TCCS------SCHHHHHHH---TTTSTH-HH
T ss_pred CCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce---Eecc------cchhhhhhe---ecChhh-hh
Confidence 3334677777 68999999999999999999999999999886432 1000 011111110 000000 00
Q ss_pred HHHHHHHHHHhcCCCCCC----------ChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 249 MLAELTRREKAAGIKPDP----------DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
...............+.. ...................++++++.+||.+..++.++ .||||||||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qr 229 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQR 229 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHH
Confidence 000000000000000000 00001111111112233567889999999988887775 499999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|+||+||+.+|++|||||||+++|......+.++++.+ .+.+||+++|+..++..+||+|++|++|..+|
T Consensus 230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTE
T ss_pred HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999988777777766554 35567778899999999999999999876544
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=257.17 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=83.2
Q ss_pred hHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEE
Q 044321 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILI 362 (521)
Q Consensus 284 ~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii 362 (521)
..++++++.+||.+..++.+++ |||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+.+||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii 191 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 3567899999999888877764 9999999999999999999999999999999988777766666544 256677
Q ss_pred EEecChhHHHhhcCeEEEEeCCEE
Q 044321 363 SLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 363 ~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
+++|+..++..+||+|++|++|..
T Consensus 192 ~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 192 VVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EECSCHHHHHHHCSEEEEEEEETT
T ss_pred EEEeChHHHHhhCCEEEEecCCcc
Confidence 788999999999999999987543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=256.16 Aligned_cols=107 Identities=25% Similarity=0.322 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 285 ~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
.+..+|+.+||.... ++ +.+..|||||||||+||++|+.+| ++|||||||+++|....+.|.++++.+ .+.
T Consensus 784 ~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~ 859 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN 859 (916)
T ss_dssp HHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 456788999996422 11 344579999999999999999865 799999999998877666666655433 345
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
+||+++|+...+ ..||+|++| ++|+|++.|+++++.
T Consensus 860 TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 566677888665 569999999 899999999999985
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=254.63 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCC---CcEEEEeCCChhhHHHHHHHHHHHHHHc--CC
Q 044321 285 ITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGP---AQALFMDEISNSTTFQIVNSLRQFIHIL--EG 358 (521)
Q Consensus 285 ~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~---P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~ 358 (521)
.+..+|+.+||... .+..+ ..|||||||||+||++|+.+ |++|||||||+++|....+.|.++++.+ .+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G 783 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 46778999999763 45544 45999999999999999996 7999999999998877666666655433 35
Q ss_pred eEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 359 TILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 359 t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
.+||+++|+.+++ ..||+|++| ++|+|++.|+++++.
T Consensus 784 ~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 784 NTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5666678888887 789999999 799999999999873
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-25 Score=249.82 Aligned_cols=105 Identities=23% Similarity=0.243 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
...+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+++|......|.++++.+ .+.
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 899 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 456899999986 5565554 59999999999999999865 999999999998877666666555433 355
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
+||+++|+.+.+ ..||+|++| ++|+|++.|+++++.
T Consensus 900 TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 666678888765 689999999 789999999999885
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-27 Score=250.03 Aligned_cols=175 Identities=12% Similarity=0.040 Sum_probs=132.7
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------ceeeecCCcc---ccCCCCHHHHHHHHHH
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------NRCDISQHDV---HIGEMTVRETLAFSAR 239 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------~~~~v~q~d~---~~~~lTV~E~l~f~~~ 239 (521)
.++|+.+++|++++|+||||||||||+|+|+|++.|..+ ..+|++|... +...+||+||+ |+..
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~ 207 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQS 207 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCB
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccc
Confidence 379999999999999999999999999999998865322 2367777763 34457888887 6432
Q ss_pred hc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 240 CQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.. +.. ....+..+++.+||.+..+ + ..||||||||
T Consensus 208 ~~~~~~-------------------------------------~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qr 243 (460)
T 2npi_A 208 LTSGAT-------------------------------------LLHNKQPMVKNFGLERINE--N-----KDLYLECISQ 243 (460)
T ss_dssp CBSSCC-------------------------------------SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHH
T ss_pred cccCcc-------------------------------------hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHH
Confidence 10 000 0001123566788876654 2 4599999999
Q ss_pred HHHHHH--HcCCCcE----EEEeC-CChhhHHHHHHHHHHHHHHcCCeEEEEEecChh-----HHHhhcCe-----EEEE
Q 044321 319 VTTGEM--LVGPAQA----LFMDE-ISNSTTFQIVNSLRQFIHILEGTILISLLQPAP-----ETYDLFDD-----IILI 381 (521)
Q Consensus 319 vaIAra--Lv~~P~i----LlLDE-PTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~-----~~~~l~D~-----VivL 381 (521)
|+||++ |+.+|++ ||||| ||+++|.. .+.|.+++++.+.|+|+++|++.+ ++..+||+ |++|
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 999999 9999999 99999 99999887 777888877777777666655431 66689999 9999
Q ss_pred e-CCEEEEecCHhHHH
Q 044321 382 S-NGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~-~G~iv~~G~~~~v~ 396 (521)
+ +|+++ .|+++++.
T Consensus 323 ~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCCTTCC-CCCHHHHH
T ss_pred eCCCcEE-ECCHHHHh
Confidence 9 99999 99987663
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-23 Score=215.51 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHcC-CeEEEEEecChhHHHhhcCeEEEE----eC
Q 044321 311 ISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHILE-GTILISLLQPAPETYDLFDDIILI----SN 383 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~~-~t~ii~i~h~~~~~~~l~D~VivL----~~ 383 (521)
|||||||||+||++|+.+| ++|||||||+++|......|.++++.+. +.+||+++|+. ++...||++++| .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~-~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA-QIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-HHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHhhcCeEEEEEEeccC
Confidence 6999999999999999999 9999999999999988888888776652 45555567776 566889999999 99
Q ss_pred CEEEEec
Q 044321 384 GHIVYQG 390 (521)
Q Consensus 384 G~iv~~G 390 (521)
|+++...
T Consensus 375 G~~~~~~ 381 (415)
T 4aby_A 375 GRTVSHV 381 (415)
T ss_dssp TEEEEEE
T ss_pred CceEEEE
Confidence 9997654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=202.64 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=68.3
Q ss_pred ccCCCCChHHHHHHHHHHHHc------CCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCe
Q 044321 306 EILRGISGGQRKRVTTGEMLV------GPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~ 377 (521)
.++..|||||||||+||+||+ .+|++|||||||+++|......+.+++..+ .+.+|++++|+... ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 355679999999999999999 799999999999999988888777776654 34566667788765 778999
Q ss_pred EEEEeCCEEEE
Q 044321 378 IILISNGHIVY 388 (521)
Q Consensus 378 VivL~~G~iv~ 388 (521)
|++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-22 Score=185.82 Aligned_cols=63 Identities=6% Similarity=-0.006 Sum_probs=47.4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----------------HHHHHHHHH---HHcCCeEEEEEecChhH
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----------------IVNSLRQFI---HILEGTILISLLQPAPE 370 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----------------i~~~L~~l~---~~~~~t~ii~i~h~~~~ 370 (521)
..||||||||+||++++.+|++|+|||||++++.. ....+.+++ ...+.| +|+++|+..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~t-vi~vtH~~~~ 161 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFR-YVYILNSPEE 161 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCS-EEEEECSHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCc-EEEEeCCHHH
Confidence 36999999999999999999999999999998877 445555542 222444 5556677766
Q ss_pred HHh
Q 044321 371 TYD 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 162 ~~~ 164 (171)
T 4gp7_A 162 VEE 164 (171)
T ss_dssp HHH
T ss_pred hhh
Confidence 643
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-23 Score=200.24 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=84.2
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce----------------eeecCCccccCCC
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR----------------CDISQHDVHIGEM 228 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~----------------~~v~q~d~~~~~l 228 (521)
++.++++.+|+|| ++|++++|+|||||||||||++|+|+ .|+.+.. +|++|+.
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3444566799996 89999999999999999999999998 6642111 2222211
Q ss_pred CHHHHH-HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 229 TVRETL-AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l-~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
.||+ .+.... ..... .......++.+++. |
T Consensus 76 --~enl~~~~~~~---------------~~~~~------------------~~~~~~~~~~~l~~-g------------- 106 (208)
T 3b85_A 76 --NEKIDPYLRPL---------------HDALR------------------DMVEPEVIPKLMEA-G------------- 106 (208)
T ss_dssp ------CTTTHHH---------------HHHHT------------------TTSCTTHHHHHHHT-T-------------
T ss_pred --HHHHHHHHHHH---------------HHHHH------------------HhccHHHHHHHHHh-C-------------
Confidence 3443 221000 00000 00001123444442 2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHH
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPET 371 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~ 371 (521)
| ||||||+|||||+.+|++|||||||++....+.+.|+++ . .+++|+ ++|+...+
T Consensus 107 ---l--Gq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 ---I--VEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp ---S--EEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred ---C--chHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 3 999999999999999999999999999666666666665 2 345566 67776443
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-24 Score=220.26 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=112.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHH-HHHHHHHhccCchhhHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE-TLAFSARCQGVGSRYEM 249 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E-~l~f~~~~~~~~~~~~~ 249 (521)
..+|+|||++|++|++++|+||||||||||+++|+|++ ...+.+|++|...++. .|+++ |+.|....
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~-~ti~~~ni~~~~~~--------- 180 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWL-ASLADTRAALVDDA--------- 180 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGG-GGGTTCSCEEEEEE---------
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCcccccc-ccHHHHhhccCccc---------
Confidence 46899999999999999999999999999999999988 3344567788765554 57776 76653100
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
. ..+...++.+ |+..++ +..|||||||| ||||+.+|
T Consensus 181 -----------------~----------------~~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 181 -----------------T----------------HACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp -----------------C----------------HHHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCC
T ss_pred -----------------c----------------HHHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCC
Confidence 0 0011233333 444444 24699999999 99999999
Q ss_pred cEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHH
Q 044321 330 QALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKF 401 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~ 401 (521)
+||| |+++|......+..+ +|.. .+...||+| +|++|++++.|+++++..+|..
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~l------------tH~~-~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLYL------------HSRV-QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CEEE----EESSCSTTCGGGGGG------------TTTE-EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHHH------------hCCH-HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999 888777655555421 4443 345789999 9999999999999998666654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-21 Score=178.75 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=65.1
Q ss_pred cCCCCChHHHHHHHHHHH-----HcCCCcEEEEeC--CChhhHHHHHHHHHHHHHHcCCeEEEEEe--cChhHHHhhcCe
Q 044321 307 ILRGISGGQRKRVTTGEM-----LVGPAQALFMDE--ISNSTTFQIVNSLRQFIHILEGTILISLL--QPAPETYDLFDD 377 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAra-----Lv~~P~iLlLDE--PTs~~~~~i~~~L~~l~~~~~~t~ii~i~--h~~~~~~~l~D~ 377 (521)
++..||||||||++||+| |+.+|++||||| ||+++|....+.+.+++...+.|+|+++| |+.+.+..++|+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 345699999999999996 999999999999 99999999999999988764455777775 788888889998
Q ss_pred EEEEeCCEEEE
Q 044321 378 IILISNGHIVY 388 (521)
Q Consensus 378 VivL~~G~iv~ 388 (521)
.+|++++
T Consensus 153 ----~~~~i~~ 159 (178)
T 1ye8_A 153 ----PGAVLIE 159 (178)
T ss_dssp ----TTCEEEE
T ss_pred ----CCcEEEE
Confidence 4566654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=185.03 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeE--EE
Q 044321 308 LRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDI--IL 380 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~V--iv 380 (521)
+..|||||||||+||++|+ .+|++|||||||+++|....+.+.+++... .++++|+++|+ .++.+.||++ ++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~-~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN-KIVMEAADLLHGVT 295 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC-TTGGGGCSEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC-HHHHhhCceEEEEE
Confidence 4569999999999999997 689999999999999998888777776654 34555666676 4678899987 78
Q ss_pred EeCCEE-EEecCHhHH
Q 044321 381 ISNGHI-VYQGPREYV 395 (521)
Q Consensus 381 L~~G~i-v~~G~~~~v 395 (521)
|.+|.. +.....++.
T Consensus 296 ~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 296 MVNGVSAIVPVEVEKI 311 (322)
T ss_dssp ESSSCEEEEECCC---
T ss_pred EeCCEEEEEEEEcchh
Confidence 887754 444554443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-22 Score=209.55 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=115.3
Q ss_pred ceeeeeeEEEEeCCc--------------------EEEEEcCCCChHHHHHHHHhCCCCCCCC----------ceeeecC
Q 044321 171 LTILKDVSGIIRPGR--------------------MTLLLGPPGSVKTTLLLALAGKLDSSLK----------NRCDISQ 220 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge--------------------~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------~~~~v~q 220 (521)
..+|++||+.|++|+ +++|+||||||||||+|+|+|++.|..+ ..++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 9999999999999999999998876521 1156666
Q ss_pred CccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccc
Q 044321 221 HDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCAD 300 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 300 (521)
++ .++.+|+.|++.++.. ...++.+|+.++|.+..
T Consensus 116 ~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~~~~L~~~~- 150 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLEKMKFYEYD- 150 (413)
T ss_dssp CS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHHHTTGGGCS-
T ss_pred cc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHHHcCCCccC-
Confidence 53 4567777776544210 01245678888887542
Q ss_pred ccccCccCCCCChH--HHHHHHHHHHHcC----------CCcEEEEeCCChhhH----HHHHHHHHHHHH----HcC---
Q 044321 301 TMVGDEILRGISGG--QRKRVTTGEMLVG----------PAQALFMDEISNSTT----FQIVNSLRQFIH----ILE--- 357 (521)
Q Consensus 301 t~vg~~~~r~LSGG--qrQRvaIAraLv~----------~P~iLlLDEPTs~~~----~~i~~~L~~l~~----~~~--- 357 (521)
..+ . |||| |+||+.||++|+. +|++++|||||+++| .++.+.|+++.. +.+
T Consensus 151 ~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 151 FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 222 2 9999 9999999999999 999999999999754 456666666642 221
Q ss_pred CeEEEEEecChhH--HHhhcCeEE
Q 044321 358 GTILISLLQPAPE--TYDLFDDII 379 (521)
Q Consensus 358 ~t~ii~i~h~~~~--~~~l~D~Vi 379 (521)
.+++++++|...+ +.+++|+|.
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CcEEEEecCcCCccCHHHHHHHHH
Confidence 3666666776655 777777764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=177.52 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=75.0
Q ss_pred CccCC-CCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhh
Q 044321 305 DEILR-GISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDL 374 (521)
Q Consensus 305 ~~~~r-~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l 374 (521)
+..++ .|||||||||+||++|+ .+|+||||||||+++|..-...|.+++.... .++|+++|. +. .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th~-~~---~ 333 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTEL-AP---G 333 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESSC-CT---T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEec-cc---c
Confidence 44566 69999999999999999 8999999999999999999999988887665 667777774 33 8
Q ss_pred cCeEEEEeCCEEEEecCHhHH
Q 044321 375 FDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v 395 (521)
+|++++|++|+++..|+++++
T Consensus 334 ~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 334 AALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp CSEEEEEETTEEEECCCTTTS
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999998765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-19 Score=182.09 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=105.1
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee--------------------------eecCCcc-ccC
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC--------------------------DISQHDV-HIG 226 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~--------------------------~v~q~d~-~~~ 226 (521)
++++||.+++|++++|+||||||||||+++|+|++.+.. +.. |++|+.. .++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~-g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 457899999999999999999999999999999876542 222 3333333 333
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.+|+++++.++... +. ...+++.+|+.+..+.+++
T Consensus 169 ~~~v~e~l~~~~~~--------------------------------------~~-----d~~lldt~gl~~~~~~~~~-- 203 (302)
T 3b9q_A 169 ATVLSKAVKRGKEE--------------------------------------GY-----DVVLCDTSGRLHTNYSLME-- 203 (302)
T ss_dssp HHHHHHHHHHHHHT--------------------------------------TC-----SEEEECCCCCSSCCHHHHH--
T ss_pred HHHHHHHHHHHHHc--------------------------------------CC-----cchHHhcCCCCcchhHHHH--
Confidence 33444443332100 00 0113456777766665555
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec--------ChhHHHhhcC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ--------PAPETYDLFD 376 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h--------~~~~~~~l~D 376 (521)
.|| |||++||++|+.+|+ +|+|| ||++++... .++.+.+..+.|+|+++|- ....+....+
T Consensus 204 ---eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~--~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~ 274 (302)
T 3b9q_A 204 ---ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP--QAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGI 274 (302)
T ss_dssp ---HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH--HHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCC
T ss_pred ---HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH--HHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCC
Confidence 499 999999999999999 99999 999887653 3455544446666665542 2233445678
Q ss_pred eEEEEeCCEE
Q 044321 377 DIILISNGHI 386 (521)
Q Consensus 377 ~VivL~~G~i 386 (521)
.|.++..|+.
T Consensus 275 pi~~i~~Ge~ 284 (302)
T 3b9q_A 275 PVKFIGVGEA 284 (302)
T ss_dssp CEEEEECSSS
T ss_pred CEEEEeCCCC
Confidence 8999999865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-21 Score=185.89 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=91.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC------------CC---CCceeeecCCccccCCCCHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD------------SS---LKNRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~------------~~---~~~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
..+++| .+|++|++++|+||||||||||+++|+|+++ +. ....+|++|+...++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 457888 7999999999999999999999999999874 11 112357777666666666665543
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHH------HHHcCCCccccccccCccCC
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYI------LKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i------L~~lgL~~~~dt~vg~~~~r 309 (521)
+.....+....+.. .. .+....+++. ++.+|+....+.++ +
T Consensus 87 ~~~~~~~n~~~~g~----~~------------------------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 133 (207)
T 1znw_A 87 EWAEIHGGLHRSGT----LA------------------------QPVRAAAATGVPVLIEVDLAGARAIKKTMP-----E 133 (207)
T ss_dssp EEEEEGGGTEEEEE----EH------------------------HHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----T
T ss_pred eehhhcCchhhcCC----cH------------------------HHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----C
Confidence 21100000000000 00 0001111221 33344443334333 3
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhh----HHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNST----TFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~----~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.|| +|+.+|++++|||||+++ +...... ++++.+. .+.++++++|+.+++..+||+|++|
T Consensus 134 ~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~-~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 134 AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQ-GDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG-GGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-ccCcEEEECCCHHHHHHHHHHHHHh
Confidence 466 899999999999999975 4444444 4444322 2445556789999999999999998
Q ss_pred e
Q 044321 382 S 382 (521)
Q Consensus 382 ~ 382 (521)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=188.15 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=84.4
Q ss_pred hhhhHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc-
Q 044321 281 EVSVITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL- 356 (521)
Q Consensus 281 ~~~~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~- 356 (521)
++..+++ .|..+||... .++.+. .|||||||||.||++|+.+| .+|||||||++++..-.+.|.++++.+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445555 5788999864 566655 59999999999999999999 599999999988766555555544332
Q ss_pred -CCeEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 357 -EGTILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 357 -~~t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
.+.+||+++|+.+ +...||+|++| .+|++++.|+++++.
T Consensus 429 ~~G~TVIvVeHdl~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDLD-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCHH-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCHH-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 3455666778876 55789999999 799999999988764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-19 Score=175.56 Aligned_cols=172 Identities=14% Similarity=0.038 Sum_probs=95.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CCceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LKNRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
+.+.+|+||||++++|++++|+||||||||||+++|+|++... ....++++|++ +++.+|+.+++.+.......
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~ 88 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNF 88 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCC
Confidence 4457999999999999999999999999999999999965311 01235788874 67789999988764322111
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
... + ..+. ......|+.+ .+..+..+ ..||+||+||+.+ +
T Consensus 89 ~~~-~----------------~~~~---------------~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~ 128 (245)
T 2jeo_A 89 DHP-D----------------AFDN---------------DLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-T 128 (245)
T ss_dssp TSG-G----------------GBCH---------------HHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-C
T ss_pred CCc-c----------------cccH---------------HHHHHHHHHH--HCCCCeec-----ccccccccCccCc-e
Confidence 000 0 0000 0112223322 23334443 4699999999988 5
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHH-hhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETY-DLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~-~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
+++.+|+++|||||+...+..+ .++ .+ .+|++++|+...+. .+++++ .+|+ +.+++..
T Consensus 129 ~~~~~~~~lilDg~~~~~~~~l----~~~---~~-~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 129 TVVYPADVVLFEGILVFYSQEI----RDM---FH-LRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp EEECCCSEEEEECTTTTTSHHH----HTT---CS-EEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred EEecCCCEEEEeCccccccHHH----HHh---cC-eEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8889999999999988655432 221 23 44555556433443 334444 5564 4555543
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=168.68 Aligned_cols=78 Identities=27% Similarity=0.278 Sum_probs=61.3
Q ss_pred cCCCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeE
Q 044321 307 ILRGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 307 ~~r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~V 378 (521)
.+..||||||| |+++|++|+.+|++|||||||+++|......+.+++... .+.+|++++|+ .++.+.||+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~-~~~~~~~d~~ 323 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELKDAADHV 323 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC-GGGGGGCSEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh-HHHHHhCCEE
Confidence 45679999999 678888999999999999999999988777777666543 23455556677 4678999999
Q ss_pred EEEe--CCE
Q 044321 379 ILIS--NGH 385 (521)
Q Consensus 379 ivL~--~G~ 385 (521)
++|. +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9986 454
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=167.94 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=104.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-ceeeecCCccccCCCCHHHHHH-HHHHhccCchhhH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-NRCDISQHDVHIGEMTVRETLA-FSARCQGVGSRYE 248 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-~~~~v~q~d~~~~~lTV~E~l~-f~~~~~~~~~~~~ 248 (521)
..+|+++++.|++|++++|+||||||||||++.|+|.+.+..+ ...|+..+ ++..+... +.....+... .
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e------~~~~~~~~r~~~~~~~~~~--~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE------ESVEETAEDLIGLHNRVRL--R 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS------SCHHHHHHHHHHHHTTCCG--G
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc------CCHHHHHHHHHHHHcCCCh--h
Confidence 4689999999999999999999999999999999998765422 22344332 23222110 1111111100 0
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH-HHHHHHHHHHcC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ-RKRVTTGEMLVG 327 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq-rQRvaIAraLv~ 327 (521)
....+.. ......+....++.+++..++. .+ ..+..+|.+| +||+. |+++..
T Consensus 94 ~~~~l~~-------------------~~~~~~~~~~~~~~~l~~~~l~--i~-----~~~~~~~~~~l~~~~~-a~~~~~ 146 (296)
T 1cr0_A 94 QSDSLKR-------------------EIIENGKFDQWFDELFGNDTFH--LY-----DSFAEAETDRLLAKLA-YMRSGL 146 (296)
T ss_dssp GCHHHHH-------------------HHHHHTHHHHHHHHHHSSSCEE--EE-----CCCCSCCHHHHHHHHH-HHHHTT
T ss_pred hcccccc-------------------CCCCHHHHHHHHHHHhccCCEE--EE-----CCCCCCCHHHHHHHHH-HHHHhc
Confidence 0000000 0001111222333343322221 11 1123589998 66666 999999
Q ss_pred CCcEEEEeCCCh---h---hH-----HHHHHHHHHHHHHcCCeEEEEEecC-hh--------------------HHHhhc
Q 044321 328 PAQALFMDEISN---S---TT-----FQIVNSLRQFIHILEGTILISLLQP-AP--------------------ETYDLF 375 (521)
Q Consensus 328 ~P~iLlLDEPTs---~---~~-----~~i~~~L~~l~~~~~~t~ii~i~h~-~~--------------------~~~~l~ 375 (521)
+|++||+||||+ + .+ ..+.+.|++++++.+.++|+++|.. .. .+..+|
T Consensus 147 ~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~a 226 (296)
T 1cr0_A 147 GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLS 226 (296)
T ss_dssp CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHC
T ss_pred CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhC
Confidence 999999999999 3 22 2466667777665566666655443 23 678899
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
|+|++|++|+.
T Consensus 227 D~vi~L~~~~~ 237 (296)
T 1cr0_A 227 DTIIALERNQQ 237 (296)
T ss_dssp SEEEEEEEC--
T ss_pred cEEEEEecCcc
Confidence 99999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-19 Score=184.19 Aligned_cols=125 Identities=10% Similarity=-0.065 Sum_probs=92.0
Q ss_pred eeEE-EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 176 DVSG-IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 176 dVS~-~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
|+|. .+++|++++|+||||||||||+++|+|++.|.. ...++|+|++.+++. |+.||+.+... .+....
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g~~~~------ 152 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHR-KGFPES------ 152 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTC-TTSGGG------
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHh-cCCChH------
Confidence 4555 378999999999999999999999999987642 235899999888877 99998754211 111000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEE
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iL 332 (521)
.....+..+|+.++ ....+..+. .|||||+|||++|++++.+|+||
T Consensus 153 ----------------------------~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~il 198 (312)
T 3aez_A 153 ----------------------------YNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDIL 198 (312)
T ss_dssp ----------------------------BCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEE
T ss_pred ----------------------------HHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEE
Confidence 00112345666676 444444443 59999999999999999999999
Q ss_pred EEeCCChhhH
Q 044321 333 FMDEISNSTT 342 (521)
Q Consensus 333 lLDEPTs~~~ 342 (521)
|||||+...+
T Consensus 199 IlDep~~~~d 208 (312)
T 3aez_A 199 ILEGLNVLQT 208 (312)
T ss_dssp EEECTTTTCC
T ss_pred EECCccccCC
Confidence 9999998653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-21 Score=185.16 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=25.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..-|+||||+|++|++++|+||||||||||+++|+|++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999999999999999999987
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-18 Score=176.21 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=104.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee--------------------------eecCCcc-ccCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC--------------------------DISQHDV-HIGE 227 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~--------------------------~v~q~d~-~~~~ 227 (521)
..+||.+++|++++|+||||||||||++.|+|++.+.. +.. +++|+.. .++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~-G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC-CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 46899999999999999999999999999999876542 222 3333333 3333
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|+++++.++... +. ...+++.+|+.+..+.++.
T Consensus 227 ~tv~e~l~~~~~~--------------------------------------~~-----d~~lldt~Gl~~~~~~~~~--- 260 (359)
T 2og2_A 227 TVLSKAVKRGKEE--------------------------------------GY-----DVVLCDTSGRLHTNYSLME--- 260 (359)
T ss_dssp HHHHHHHHHHHHT--------------------------------------TC-----SEEEEECCCCSSCCHHHHH---
T ss_pred hhHHHHHHHHHhC--------------------------------------CC-----HHHHHHhcCCChhhhhHHH---
Confidence 4444444332100 00 0013455677766655554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecC--------hhHHHhhcCe
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQP--------APETYDLFDD 377 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~--------~~~~~~l~D~ 377 (521)
.|| |||++||++|+.+|+ +|+|| ||++++... .++.+.+..+.|+|+++|-+ ...+....+.
T Consensus 261 --eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~--~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 261 --ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP--QAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp --HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH--HHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred --HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH--HHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 499 999999999999999 99999 999887653 34455444466666655422 2334456788
Q ss_pred EEEEeCCEE
Q 044321 378 IILISNGHI 386 (521)
Q Consensus 378 VivL~~G~i 386 (521)
|.++..|+.
T Consensus 333 I~~ig~Ge~ 341 (359)
T 2og2_A 333 VKFIGVGEA 341 (359)
T ss_dssp EEEEECSSS
T ss_pred EEEEeCCCC
Confidence 999988864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-18 Score=178.57 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=93.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+++++|+.|++|++++|+||||||||||+++|+|+++|. .+...+...+. +. + ..
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e----~~------~----~~--------- 214 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEE----IV------F----KH--------- 214 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCC----CC------C----SS---------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeec----cc------c----cc---------
Confidence 3899999999999999999999999999999999998875 23333332211 00 0 00
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.. + .++ +..+ |||+||++||+||..+|++
T Consensus 215 -------------------------------------------~~---~-~i~--~~~g--gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 215 -------------------------------------------HK---N-YTQ--LFFG--GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp -------------------------------------------CS---S-EEE--EECB--TTBCHHHHHHHHTTSCCSE
T ss_pred -------------------------------------------ch---h-EEE--EEeC--CChhHHHHHHHHhhhCCCE
Confidence 00 0 000 0011 8999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|++||||+. ++.+.|+.+. .+++++++++|... +.+.||++++|.+|..
T Consensus 244 lildE~~~~---e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 244 IILGELRSS---EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEECCCCST---HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred EEEcCCChH---HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999983 3455555543 24543444445544 7889999999988753
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-17 Score=178.11 Aligned_cols=151 Identities=13% Similarity=0.031 Sum_probs=99.7
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeee-cCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHH
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDI-SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRR 256 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v-~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~ 256 (521)
++.|++|++++|+||||||||||+++|+|...+......|+ +|+.. .++.++. ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~----~~---------------- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNA----YS---------------- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHH----HT----------------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHH----HH----------------
Confidence 56999999999999999999999999999876642222343 33321 0111111 00
Q ss_pred HHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeC
Q 044321 257 EKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336 (521)
Q Consensus 257 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDE 336 (521)
.++ + .+. +..+|+....+..+ ..|||||+||+.+|+++..+|++|++|
T Consensus 331 ---~g~----~------------------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 331 ---WGM----D------------------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp ---TSC----C------------------HHH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred ---cCC----C------------------HHH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 000 0 011 12345555554443 459999999999999999999999999
Q ss_pred CChhhHHH-----HHHHHHHHH---HHcCCeEEEEEecCh----------hHHHhhcCeEEEEeCCE
Q 044321 337 ISNSTTFQ-----IVNSLRQFI---HILEGTILISLLQPA----------PETYDLFDDIILISNGH 385 (521)
Q Consensus 337 PTs~~~~~-----i~~~L~~l~---~~~~~t~ii~i~h~~----------~~~~~l~D~VivL~~G~ 385 (521)
||++++.. ..+.+.+++ ++.+.|+|++. |+. ..+..+||+|++|.+|+
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvs-h~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTN-TSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEE-ECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEE-CcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99976655 444444333 33355555554 554 56678999999999886
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-17 Score=188.39 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=99.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..|++||+|.+.+|++++|+||||||||||||+|++..-.. ....++++....++.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~a-q~G~~vpa~~~~~~~----------------------- 704 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMA-QIGCFVPCESAEVSI----------------------- 704 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHH-HHTCCBSEEEEEEEC-----------------------
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHH-hcCCccccccccchH-----------------------
Confidence 46889999999999999999999999999999994311000 000122221111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH--cCC
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML--VGP 328 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL--v~~ 328 (521)
++.++..+|+.+ ...+++|+|+++++.+|++| +.+
T Consensus 705 -----------------------------------~d~i~~~ig~~d--------~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 705 -----------------------------------VDCILARVGAGD--------SQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp -----------------------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCT
T ss_pred -----------------------------------HHHHHHhcCchh--------hHHHhHhhhHHHHHHHHHHHHhccC
Confidence 000111223321 12246999999999999998 999
Q ss_pred CcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 329 AQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
|+++||||||++++...... +.+.+....+++++++||+ .++..+||++..+.+|++.+.++.+++
T Consensus 742 ~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~-~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF-HELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp TCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC-GGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc-HHHHHHhcccceeEeeEEEEEecCCcE
Confidence 99999999999887643322 2222232224455556676 466789999999999999988776654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-19 Score=177.72 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=83.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCCCC----------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDSSL----------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~~~----------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
.++|+||||||||||+|+|+|+..|.. ...++++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~----- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN----- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-----
Confidence 479999999999999999999876542 12378899888888999999998864322100
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
..+ .+...+. ....+..++ .|||||||||+||||++.
T Consensus 79 -----------------~~~---------------~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~-- 115 (270)
T 3sop_A 79 -----------------CWE---------------PIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC-- 115 (270)
T ss_dssp -----------------CSH---------------HHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE--
T ss_pred -----------------HHH---------------HHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee--
Confidence 000 0001111 112222332 499999999999999886
Q ss_pred cEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec
Q 044321 330 QALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
++|+|||+.+++..-.+.++.+.. ..++|++++.
T Consensus 116 -lllldep~~gL~~lD~~~l~~L~~--~~~vI~Vi~K 149 (270)
T 3sop_A 116 -LYFISPTGHSLRPLDLEFMKHLSK--VVNIIPVIAK 149 (270)
T ss_dssp -EEEECCCSSSCCHHHHHHHHHHHT--TSEEEEEETT
T ss_pred -eEEEecCCCcCCHHHHHHHHHHHh--cCcEEEEEec
Confidence 999999999877777777776643 2566665543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-17 Score=194.23 Aligned_cols=158 Identities=14% Similarity=0.049 Sum_probs=104.1
Q ss_pred cceeeeeeEEEEeC-------CcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 170 HLTILKDVSGIIRP-------GRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 170 ~~~iL~dVS~~I~~-------Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
...|++||+|.+.+ |++++|+||||||||||||+| |++.+-....+||+|+.. .+||.+++..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~---~l~v~d~I~~------ 837 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVC---RLTPIDRVFT------ 837 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEE---EECCCSBEEE------
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcC---CCCHHHHHHH------
Confidence 35699999999987 999999999999999999999 876532223358888652 3455443310
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.+|+.+.... ....+|+|+++ +++|
T Consensus 838 -------------------------------------------------rig~~d~~~~-----~~stf~~em~~-~a~a 862 (1022)
T 2o8b_B 838 -------------------------------------------------RLGASDRIMS-----GESTFFVELSE-TASI 862 (1022)
T ss_dssp -------------------------------------------------ECC--------------CHHHHHHHH-HHHH
T ss_pred -------------------------------------------------HcCCHHHHhh-----chhhhHHHHHH-HHHH
Confidence 0111111110 11247777665 9999
Q ss_pred HHHcCCCcEEEEeCCChhhHHH-----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE--EecCHhH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQ-----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV--YQGPREY 394 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~-----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv--~~G~~~~ 394 (521)
++++.+|+++|||||+++++.. +...|..+.+ ..+.+++++||+.+.+..++|++.++ +|++. +.|++++
T Consensus 863 l~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~-~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 863 LMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE-TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp HHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH-TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred HHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999999999999976643 2344555443 22556666788888888899999887 48887 5565543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-18 Score=181.48 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=107.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce---------------------------eeecCC-
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR---------------------------CDISQH- 221 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~---------------------------~~v~q~- 221 (521)
...+|+++ |.|.+|++++|+|||||||||||++|+|+.+++.... ++++|.
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~ 222 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD 222 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC
Confidence 56799999 9999999999999999999999999999987752211 122221
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+..++.+|+.+|+.+.+.. ...-+ .++ ..
T Consensus 223 ~~~~~~~~v~~~~~~~ae~-------------------------------------------------~~~~~-~~v-~~ 251 (438)
T 2dpy_A 223 VSPLLRMQGAAYATRIAED-------------------------------------------------FRDRG-QHV-LL 251 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHH-------------------------------------------------HHTTT-CEE-EE
T ss_pred CCHHHHHHHHHHHHHHHHH-------------------------------------------------HHhCC-CCH-HH
Confidence 1112222222222221110 00000 000 00
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcC------Ce-----EEEEEecChhH
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILE------GT-----ILISLLQPAPE 370 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~------~t-----~ii~i~h~~~~ 370 (521)
.+ +.+..+|+|| |||+|| +.+|++ |++++......+.+++.+.. ++ +|++++|+..
T Consensus 252 ~l--d~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 252 IM--DSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp EE--ECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred HH--HhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 01 1134599999 999999 888887 88888888777777765542 42 6666778776
Q ss_pred HHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 371 TYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 371 ~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
..+||++++|.+|+|+..|++.++
T Consensus 319 -~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 -DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -chhhceEEEEeCcEEEEeCCHHHc
Confidence 678999999999999999988776
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=171.89 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=84.2
Q ss_pred HHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEE
Q 044321 287 DYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHIL--EGTIL 361 (521)
Q Consensus 287 ~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~i 361 (521)
...|..+||... .++.++ .|||||||||+||++|+.+|+ +|||||||++++....+.|.++++.+ .+.+|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 346778999754 465554 599999999999999999887 99999999998877777666666554 24566
Q ss_pred EEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 362 ISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 362 i~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
|+++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 520 ivVtHd~~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 520 IVVEHDEEVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEECCCHHHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEeCCHHHH-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 6678887655 569999999 899999999999875
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=174.64 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=85.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...|++||||.+++|++++|+||||||||||||+|++..... ....+++.....++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g~~vpa~~~~i~~---------------------- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIGSYVPAEEATIGI---------------------- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHTCCBSSSEEEEEC----------------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcCccccchhhhhhH----------------------
Confidence 356999999999999999999999999999999998632100 000112211110000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
++.++..+|+.+.... ....+|+||+|++.|+++ +.+|
T Consensus 716 ------------------------------------~d~i~~~ig~~d~l~~-----~~stfs~em~~~~~il~~-a~~p 753 (918)
T 3thx_B 716 ------------------------------------VDGIFTRMGAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQ 753 (918)
T ss_dssp ------------------------------------CSEEEEEC---------------CCHHHHHHHHHHHHHH-CCTT
T ss_pred ------------------------------------HHHHHHhCChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCC
Confidence 0001112222221111 234699999999999998 8999
Q ss_pred cEEEEeCCChhhHHHHHHHH-----HHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 330 QALFMDEISNSTTFQIVNSL-----RQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L-----~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
+++|||||++++|......+ ..+.+. .+++++++||+. ++.+++|+
T Consensus 754 ~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~-el~~l~~~ 804 (918)
T 3thx_B 754 SLVILDELGRGTSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYP-PVCELEKN 804 (918)
T ss_dssp CEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCG-GGGGHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcH-HHHHHHhh
Confidence 99999999999887533333 333222 345555566765 44456654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=141.57 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=84.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC------CCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS------LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~------~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
+-|++|++++|+||||||||||+++|+|.+.+. .....|+...+. .. .+.+.+..+..+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~----~~-~~~i~~~~~~~~~--------- 85 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----FR-PERIREIAQNRGL--------- 85 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC----CC-HHHHHHHHHHTTS---------
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC----CC-HHHHHHHHHHcCC---------
Confidence 479999999999999999999999999955442 112344444321 11 1122221111000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH-HHHHHHHHHcC----
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR-KRVTTGEMLVG---- 327 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr-QRvaIAraLv~---- 327 (521)
. .+.+++.+.+ ....+++++ +.+..+..++.
T Consensus 86 ----------~----------------------~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (231)
T 4a74_A 86 ----------D----------------------PDEVLKHIYV------------ARAFNSNHQMLLVQQAEDKIKELLN 121 (231)
T ss_dssp ----------C----------------------HHHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------C----------------------HHHHhhcEEE------------EecCChHHHHHHHHHHHHHHHHhcc
Confidence 0 0011221111 112444443 33555555554
Q ss_pred ---CCcEEEEeCCChhhHH----------------HHHHHHHHHHHHcCCeEEEEEecChh----HHHhhcCeEEEEeCC
Q 044321 328 ---PAQALFMDEISNSTTF----------------QIVNSLRQFIHILEGTILISLLQPAP----ETYDLFDDIILISNG 384 (521)
Q Consensus 328 ---~P~iLlLDEPTs~~~~----------------~i~~~L~~l~~~~~~t~ii~i~h~~~----~~~~l~D~VivL~~G 384 (521)
+|+++++|||++.++. ++++.|.+++++.+.|+| +++|... .+...+|.+++|++|
T Consensus 122 ~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi-~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 122 TDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF-VTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEE-EEEECC---------CCSEEEEEEEC
T ss_pred cCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEE-EEeecccCcchhhHhhceEEEEEEec
Confidence 9999999999996554 566677777665455554 4566333 477899999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=169.19 Aligned_cols=102 Identities=24% Similarity=0.272 Sum_probs=80.0
Q ss_pred HHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEE
Q 044321 289 ILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILIS 363 (521)
Q Consensus 289 iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~ 363 (521)
.|..+||... .++.++ +|||||+|||.||++|..+| ++|||||||++++..-.+.|.++++.+ .+.+||+
T Consensus 487 ~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 561 (972)
T ss_dssp HHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5889999864 576665 59999999999999999985 999999999988765544444443322 3455666
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
++|+.+.+ ..||+|++| ++|++++.|+++++.
T Consensus 562 VeHdl~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 562 VEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp ECCCHHHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EecCHHHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 77887654 679999999 799999999998764
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=172.18 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=82.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-CCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-SSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
..+++||||. |++++|+||||||||||||+|+|+.. +.. ..+++.....++ .+.+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~--G~~vpa~~~~i~---------------~v~~---- 621 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV--GSFVPAEEAHLP---------------LFDG---- 621 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT--TCCBSSSEEEEC---------------CCSE----
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc--Cceeehhcccee---------------eHHH----
Confidence 4689999999 99999999999999999999999642 211 112221100000 0000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH--cC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML--VG 327 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL--v~ 327 (521)
++..++.. +....++|+|+++++.+++++ +.
T Consensus 622 ---------------------------------------i~~~~~~~--------d~l~~g~S~~~~e~~~la~il~~a~ 654 (765)
T 1ewq_A 622 ---------------------------------------IYTRIGAS--------DDLAGGKSTFMVEMEEVALILKEAT 654 (765)
T ss_dssp ---------------------------------------EEEECCC--------------CCSHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------hhccCCHH--------HHHHhcccHHHHHHHHHHHHHHhcc
Confidence 00001111 111235899999999999999 99
Q ss_pred CCcEEEEeCC---ChhhHHHHH-HHHHHHHHHcCCeEEEEEecChhHHHhhc
Q 044321 328 PAQALFMDEI---SNSTTFQIV-NSLRQFIHILEGTILISLLQPAPETYDLF 375 (521)
Q Consensus 328 ~P~iLlLDEP---Ts~~~~~i~-~~L~~l~~~~~~t~ii~i~h~~~~~~~l~ 375 (521)
+|+++||||| |+++|.... ..+.+.+...+.+ ++++||+.+. ..++
T Consensus 655 ~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 655 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEECCCHHH-HTCC
T ss_pred CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCE-EEEEeCCHHH-HHhh
Confidence 9999999999 887776543 3344444443444 4555676543 4454
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-17 Score=158.21 Aligned_cols=141 Identities=13% Similarity=0.027 Sum_probs=94.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcccc--CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI--GEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~--~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
.++|++++|+||||||||||+++|+|++.+ ..++++|++.++ ..+|+.+++.+..... ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~---~~------------ 64 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLRVNYDHP---DA------------ 64 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG---GG------------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcCCCCCCh---hh------------
Confidence 578999999999999999999999998754 347888887665 5678888765431100 00
Q ss_pred hcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH----HHHHHHHHHcCCCcEEEE
Q 044321 259 AAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR----KRVTTGEMLVGPAQALFM 334 (521)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr----QRvaIAraLv~~P~iLlL 334 (521)
........+++.+++.+..+.++ ..+|+||+ ||+++|++++.+|.++++
T Consensus 65 ----------------------~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~ 117 (211)
T 3asz_A 65 ----------------------FDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLY 117 (211)
T ss_dssp ----------------------BCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTS
T ss_pred ----------------------hhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhcc
Confidence 00112344566677766555443 35999964 788999999999999999
Q ss_pred eCCChh-------hHH----HHHHHHHHHHHHcCCeEEEEEec
Q 044321 335 DEISNS-------TTF----QIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 335 DEPTs~-------~~~----~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
||||++ ++. .+.+.+.+.....+.|++.++|+
T Consensus 118 de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 118 PKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp SHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999886 443 44555554433335555554443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-16 Score=164.13 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=108.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...+|+++ |.|.+|++++|+||||||||||+++|+|...++......+.+.. -.+.+.+.. ... .
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~i~~------~~~--~- 122 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEFLAL------LPQ--S- 122 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHHHTT------SCH--H-
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHHHHh------hhh--h-
Confidence 56799999 99999999999999999999999999999887632222222210 012211111 000 0
Q ss_pred HHHHHHHHHhcCC---CCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc
Q 044321 250 LAELTRREKAAGI---KPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326 (521)
Q Consensus 250 ~~~l~~~e~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv 326 (521)
.+ ++...+ ...+....+..... .....+ .+...| .+..+--+.+..||+|| |||++| +
T Consensus 123 --~~---~~~v~~~~~~~~~~~~r~~~~~~-----~~~~ae-~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 123 --TL---SKCVLVVTTSDRPALERMKAAFT-----ATTIAE-YFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp --HH---TTEEEEEECTTSCHHHHHHHHHH-----HHHHHH-HHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred --hh---hceEEEEECCCCCHHHHHHHHHH-----HHHHHH-HHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 00 000000 00000000000000 000001 111111 11100002244699999 899999 5
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCe-----EEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGT-----ILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t-----~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
++|++ |++++......+.+++... +++ +|++.+|+.. ..+||++++|.+|+|+..|+.+++
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 77776 7899999988888887654 255 6777778876 678999999999999999988765
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=131.38 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=64.8
Q ss_pred ccCCCCChHHHHHHHHH------HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCe
Q 044321 306 EILRGISGGQRKRVTTG------EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIA------raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~ 377 (521)
..+..|||||||||+|| ++|+.+|++|||||||+++|....+.+.+++... ++.+|++++|+. ++..+||+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCE
Confidence 45567999999999876 8999999999999999999998888887777654 244556666776 67789999
Q ss_pred EEEE--eCCEE
Q 044321 378 IILI--SNGHI 386 (521)
Q Consensus 378 VivL--~~G~i 386 (521)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46644
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-16 Score=169.16 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCcceeeeeeEE-EEeCCcEEEEEcCCCChHHHHHHH--HhCCCCCCCCceeeecCCc
Q 044321 168 KKHLTILKDVSG-IIRPGRMTLLLGPPGSVKTTLLLA--LAGKLDSSLKNRCDISQHD 222 (521)
Q Consensus 168 ~~~~~iL~dVS~-~I~~Ge~~~LlGpnGSGKSTLLk~--LaG~l~~~~~~~~~v~q~d 222 (521)
.....+|++||+ .|++|++++|+||||||||||+++ ++|+++|. ....|+...+
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~ 78 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEE 78 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSS
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeC
Confidence 345679999999 999999999999999999999999 78987654 3456776554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=149.90 Aligned_cols=73 Identities=14% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHcC--CeEEEEEecChhHHHhhcCeEEEEe
Q 044321 309 RGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHILE--GTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~--~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..||||||||++||++|+ .+|++|||||||+++|......+.+++.... ++.+|+++|+ ..+...||++++|.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~-~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK-NTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC-HHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 359999999999999999 6899999999999999998888888876542 4556666676 46678899999986
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-15 Score=150.20 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=83.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+++| +++|++++|+||||||||||+++|+|+++|...+...+.+++.-+.. +...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-------------~~~~------- 72 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-------------KHKK------- 72 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-------------CCSS-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-------------CCcc-------
Confidence 4899999 89999999999999999999999999887642333444333321100 0000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+ .. + ..+|+.. ..+ |++||++|..+|++
T Consensus 73 ---------~~--------------v~-q----------~~~gl~~-----------~~l------~~~la~aL~~~p~i 101 (261)
T 2eyu_A 73 ---------SI--------------VN-Q----------REVGEDT-----------KSF------ADALRAALREDPDV 101 (261)
T ss_dssp ---------SE--------------EE-E----------EEBTTTB-----------SCH------HHHHHHHHHHCCSE
T ss_pred ---------ee--------------ee-H----------HHhCCCH-----------HHH------HHHHHHHHhhCCCE
Confidence 00 00 0 0122211 112 89999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|++|||| |.+....+.+.+. .+.+ +++++|+.. +...||++++|..
T Consensus 102 lllDEp~---D~~~~~~~l~~~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 102 IFVGEMR---DLETVETALRAAE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp EEESCCC---SHHHHHHHHHHHH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred EEeCCCC---CHHHHHHHHHHHc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 9999999 3333333333332 3444 555566654 6788898887753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=135.15 Aligned_cols=167 Identities=16% Similarity=0.078 Sum_probs=97.2
Q ss_pred ceeeeeeEE-EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 171 LTILKDVSG-IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 171 ~~iL~dVS~-~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...|+++.+ .+++|++++|+||||||||||++.|++...+......|+..+ .+..+............+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~-- 80 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE------ESRDSIIRQAKQFNWDFEEY-- 80 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS------SCHHHHHHHHHHTTCCCGGG--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc------cCHHHHHHHHHHhcchHHHH--
Confidence 456788885 899999999999999999999999998654332222343322 22222111110110000000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
... .. ...+.....++ ...+ ....|.++.++...+.+...+|
T Consensus 81 -------------~~~-~~---------------~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~ 122 (235)
T 2w0m_A 81 -------------IEK-KL---------------IIIDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGY 122 (235)
T ss_dssp -------------BTT-TE---------------EEEECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCS
T ss_pred -------------hhC-CE---------------EEEeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCC
Confidence 000 00 00000000011 0011 1235999999888888878899
Q ss_pred c--EEEEeCCChhh--H----HHHHHHHHHHHHHcCCeEEEEEecCh--------hHHHhhcCeEEEEeCC
Q 044321 330 Q--ALFMDEISNST--T----FQIVNSLRQFIHILEGTILISLLQPA--------PETYDLFDDIILISNG 384 (521)
Q Consensus 330 ~--iLlLDEPTs~~--~----~~i~~~L~~l~~~~~~t~ii~i~h~~--------~~~~~l~D~VivL~~G 384 (521)
+ ++++||||+.+ + .++++.|++++++.+ .++++++|.. +.+..+||+|++|+..
T Consensus 123 ~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 123 GKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9 99999999743 3 567777777766544 5555566766 4588899999999854
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=136.71 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=83.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC----------CCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----------LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~----------~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
-+++|++++|+||||||||||++.|++.+... .....|+..++ +..+ +. .++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~------~~~~-~~--~r~~~~------ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED------PPTA-IH--HRLHAL------ 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS------CHHH-HH--HHHHHH------
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC------CHHH-HH--HHHHHH------
Confidence 58999999999999999999999999854321 01112333222 1111 10 000000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
+.. ......+.+++.+++.+..+.. +..||+||++++ ++++.+|
T Consensus 91 -----------g~~-----------------~~~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~ 134 (279)
T 1nlf_A 91 -----------GAH-----------------LSAEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGR 134 (279)
T ss_dssp -----------HTT-----------------SCHHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTC
T ss_pred -----------Hhh-----------------cChhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCC
Confidence 000 0001234466777777655443 345999998765 6788899
Q ss_pred cEEEEeCCCh--hhH-------HHHHHHHHHHHHHcCCeEEEEEecChh
Q 044321 330 QALFMDEISN--STT-------FQIVNSLRQFIHILEGTILISLLQPAP 369 (521)
Q Consensus 330 ~iLlLDEPTs--~~~-------~~i~~~L~~l~~~~~~t~ii~i~h~~~ 369 (521)
+++++||||+ +++ .++++.|..++++.+.|+|+ ++|...
T Consensus 135 ~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~-i~H~~~ 182 (279)
T 1nlf_A 135 RLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASK 182 (279)
T ss_dssp SEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--
T ss_pred CEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE-EecCCC
Confidence 9999999999 433 45677777776655555555 556543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-14 Score=161.65 Aligned_cols=145 Identities=13% Similarity=-0.003 Sum_probs=86.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcc-------ccCCCCHHHHHHHHHHhccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV-------HIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~-------~~~~lTV~E~l~f~~~~~~~ 243 (521)
..+++|+|+. ++|++++|+||||||||||||+|+|+.... ....++++... .+..+++.+++..
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~------- 665 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIGSYVPAQKVEIGPIDRIFTRVGAADDLAS------- 665 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTTCCBSSSEEEECCCCEEEEEEC--------------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcCcccchhcccceeHHHHHhhCCHHHHHHh-------
Confidence 4689999999 999999999999999999999999953211 01123332211 1111111111100
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
....+|+|+++ ++.+.
T Consensus 666 ---------------------------------------------------------------~~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 666 ---------------------------------------------------------------GRSTFMVEMTE-TANIL 681 (800)
T ss_dssp -------------------------------------------------------------------CHHHHHH-HHHHH
T ss_pred ---------------------------------------------------------------hhhhhhHHHHH-HHHHH
Confidence 01236777664 44445
Q ss_pred HHcCCCcEEEEeCCChhhH---HH-H-HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 324 MLVGPAQALFMDEISNSTT---FQ-I-VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~---~~-i-~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
.++.+|+++|||||+++++ .. + ...+..+.+ ..+.+++++||+.+ ...+||++..+.+|++.+..
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~-~~g~~vl~~TH~~e-l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN-KIKALTLFATHYFE-LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH-TTCCEEEEECSCGG-GGGHHHHSTTEEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh-ccCCeEEEEeCCHH-HHHHhhhhhceEEEEEEEEE
Confidence 5689999999999976543 22 2 344444433 22445555667654 45688887777777776544
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-16 Score=147.77 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=58.8
Q ss_pred cCCCCChHHHHHHH-HHH---HHcCCCcEEEEeC--CChhhHHHHHHHHHHHHHHcCCeEEE---EEecChhHHHhhcCe
Q 044321 307 ILRGISGGQRKRVT-TGE---MLVGPAQALFMDE--ISNSTTFQIVNSLRQFIHILEGTILI---SLLQPAPETYDLFDD 377 (521)
Q Consensus 307 ~~r~LSGGqrQRva-IAr---aLv~~P~iLlLDE--PTs~~~~~i~~~L~~l~~~~~~t~ii---~i~h~~~~~~~l~D~ 377 (521)
+...+|||||+++. +++ |++.+|++||+|| |+...+...++.|.+++.. ..++|+ +++|+.+ ..+.|+
T Consensus 80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-~~~~ilgti~vsh~~~--~~~vd~ 156 (189)
T 2i3b_A 80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-PGTIILGTIPVPKGKP--LALVEE 156 (189)
T ss_dssp SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-SSCCEEEECCCCCSSC--CTTHHH
T ss_pred EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-CCcEEEEEeecCCCCc--hHHHHH
Confidence 34469999999984 444 5899999999999 6767778889999998874 334443 3336543 346677
Q ss_pred EEEEeCCEEEEec
Q 044321 378 IILISNGHIVYQG 390 (521)
Q Consensus 378 VivL~~G~iv~~G 390 (521)
|..+.+|+|+.-.
T Consensus 157 i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 157 IRNRKDVKVFNVT 169 (189)
T ss_dssp HHTTCCSEEEECC
T ss_pred HeecCCcEEEEeC
Confidence 7777888887643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-15 Score=154.44 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=76.4
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC-CCCCCC---------------ceeeecCCccccCCCC
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK-LDSSLK---------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~-l~~~~~---------------~~~~v~q~d~~~~~lT 229 (521)
+.++.+.++++++|.| +|+||||||||||+++|+|. +.+... ..+++.|.+.....+|
T Consensus 6 ~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEE
T ss_pred ceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3345668999999998 99999999999999999996 443211 1244555555555677
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.++..++.... ..+ ......+.+.+ ..+. +++
T Consensus 80 v~Dt~g~~~~~~-------------~~e-----------------------~~~~l~~~l~~------~~~~-----~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAIN-------------CRD-----------------------CFKTIISYIDE------QFER-----YLH 112 (301)
T ss_dssp EEEEC-----------------------------------------------CTTHHHHHHH------HHHH-----HHH
T ss_pred hhhhhhhhhhcC-------------cHH-----------------------HHHHHHHHHHH------HHHH-----HHH
Confidence 777766542110 000 00011122111 1122 234
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCCh-hhHHHHHHHHHHHHHHcCCeEEEEEecCh
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISN-STTFQIVNSLRQFIHILEGTILISLLQPA 368 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs-~~~~~i~~~L~~l~~~~~~t~ii~i~h~~ 368 (521)
++|||||||+.+||+++ +|++||||+ +++..-.+.++++.. ....++|+..|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCC
Confidence 59999999999999886 999999998 477766666665532 1245666666665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-14 Score=145.26 Aligned_cols=163 Identities=20% Similarity=0.204 Sum_probs=89.7
Q ss_pred eeeeee-EEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCC---Cce-eeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 172 TILKDV-SGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSL---KNR-CDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 172 ~iL~dV-S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~---~~~-~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +|.. ... .|+...+.. . .+.+.+.+...+..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~-~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----R-PERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----C-HHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----C-HHHHHHHHHHcCCC
Confidence 345555 6899999999999999999999999999987 3332 133 677665431 1 23333222111100
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
. +.+++.+-+ ... --|++++|++.++++
T Consensus 193 -----------------------~------------------~~v~~ni~~--------~~~---~~~~~~~~~l~~~~~ 220 (349)
T 1pzn_A 193 -----------------------P------------------DEVLKHIYV--------ARA---FNSNHQMLLVQQAED 220 (349)
T ss_dssp -----------------------H------------------HHHGGGEEE--------EEC---CSHHHHHHHHHHHHH
T ss_pred -----------------------H------------------HHHhhCEEE--------Eec---CChHHHHHHHHHHHH
Confidence 0 011111111 100 125788899999988
Q ss_pred Hc-------CCCcEEEEeCCChhhHHH----------------HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 325 LV-------GPAQALFMDEISNSTTFQ----------------IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 325 Lv-------~~P~iLlLDEPTs~~~~~----------------i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++ .+|++||+||||+.++.. ++..|++++++.+ +++++++|........++....+
T Consensus 221 ~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~~h~~~~~~~~~~~~~~~ 299 (349)
T 1pzn_A 221 KIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQARPDAFFGDPTRP 299 (349)
T ss_dssp HHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEEECC-------------
T ss_pred HHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEcccccccccccCCcccc
Confidence 88 789999999999976542 3334455544434 45555566555554455666677
Q ss_pred eCCEEEEecCH
Q 044321 382 SNGHIVYQGPR 392 (521)
Q Consensus 382 ~~G~iv~~G~~ 392 (521)
..|+++.++..
T Consensus 300 ~~G~~l~~~~~ 310 (349)
T 1pzn_A 300 IGGHILAHSAT 310 (349)
T ss_dssp --CCCCCTTCS
T ss_pred CCcceEeecCc
Confidence 77777666543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=128.93 Aligned_cols=150 Identities=19% Similarity=0.108 Sum_probs=92.2
Q ss_pred eeeeeeE-EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 172 TILKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 172 ~iL~dVS-~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..|+++. +-+++|++++|+||||||||||++.|++ . ......|+..+.. .+.. .+.-...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~----~~~~-~~~~~~~----------- 67 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG----FSPE-RLVQMAE----------- 67 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC----CCHH-HHHHHHH-----------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC----CCHH-HHHHHHH-----------
Confidence 4566665 4799999999999999999999999998 2 2223355544321 1111 1100000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH--HHHHHHHHHHcCC
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ--RKRVTTGEMLVGP 328 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq--rQRvaIAraLv~~ 328 (521)
..++ + .+.+++.+. +. ..|+++ ++++..+++++.+
T Consensus 68 --------~~~~----~------------------~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~ 104 (220)
T 2cvh_A 68 --------TRGL----N------------------PEEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDS 104 (220)
T ss_dssp --------TTTC----C------------------HHHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCT
T ss_pred --------hcCC----C------------------hHHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhc
Confidence 0000 0 011222211 11 245554 5688888999986
Q ss_pred -CcEEEEeCCChhhH------------HHHHHHHHHHHHHcCCeEEEEEecChh-------------HHHhhcCeEEEEe
Q 044321 329 -AQALFMDEISNSTT------------FQIVNSLRQFIHILEGTILISLLQPAP-------------ETYDLFDDIILIS 382 (521)
Q Consensus 329 -P~iLlLDEPTs~~~------------~~i~~~L~~l~~~~~~t~ii~i~h~~~-------------~~~~l~D~VivL~ 382 (521)
|+++++||||+.++ .++++.|++++++.+.++|++ +|... .+...||.|++|+
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~-~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~ 183 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVI-NQVHFDSRTEMTKPVAEQTLGYRCKDILRLD 183 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEE-ECSSSSCTTSSCCSCCCHHHHHTSSEEEEEE
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-eeEEEcCCCCccccCCCcceeecCcEEEEEE
Confidence 99999999999543 234555777776666666655 45433 4678999999997
Q ss_pred CC
Q 044321 383 NG 384 (521)
Q Consensus 383 ~G 384 (521)
..
T Consensus 184 ~~ 185 (220)
T 2cvh_A 184 KL 185 (220)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-14 Score=142.99 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec
Q 044321 311 ISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
++..++||++|||+++.+|+ +|.|| |+++. ++++.++.+.+..+.|+|+++|.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--NGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT--HHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH--HHHHHHHHHHHHcCCcEEEEECC
Confidence 45566999999999999999 78888 55543 35555566554446666665543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-14 Score=150.78 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHH
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~ 231 (521)
.++.+.+++|+||.| +|+||||||||||+++|+|...+... ..+++.|.+..+..+||.
T Consensus 20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEE
T ss_pred eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeee
Confidence 334567999999998 99999999999999999998653110 124556666666678888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+|+.|+..... .. . ...+.+++ + ..+
T Consensus 94 Dt~g~~~~~~~-------------~~---------~--------------~~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDN-------------SN---------C--------------WQPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC-----------------------------------------------CHHHHHHH-H-----------------HHH
T ss_pred echhhhhhccc-------------hh---------h--------------HHHHHHHH-H-----------------HHH
Confidence 88776532100 00 0 00011111 1 025
Q ss_pred ChHHHHHHHHHHHHcCCCc---EEEEeCCC-hhhHHHHHHHHHHHHHHcCCeEEEEEec
Q 044321 312 SGGQRKRVTTGEMLVGPAQ---ALFMDEIS-NSTTFQIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~---iLlLDEPT-s~~~~~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
+.+++||++|||+++.+|+ +|++|||| .+++..-...++.+. .+.++|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh--ccCcEEEEEEc
Confidence 6677889999999999999 99999999 466655555555543 24566666655
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-14 Score=146.29 Aligned_cols=59 Identities=7% Similarity=0.128 Sum_probs=43.8
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+||+||..+|++|++|||+. .+..+.+.++.. .|.+ +++++|....+ ..+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~d---~e~~~~~~~~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMRD---LETIRLALTAAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCCS---HHHHHHHHHHHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCCC---HHHHHHHHHHHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 89999999999999999994 555555555543 3555 55566766555 789999988554
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-12 Score=117.67 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=65.0
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 308 LRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+..||||||||++||++|+ .+|+++||||||+++|......+.++++.. ..+.+|+++|+. .+...||+++.+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~-~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD-VMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-HHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH-HHHHhCCEEEEEE
Confidence 4569999999999999996 567999999999999998888877777654 334455555654 5678999998664
Q ss_pred --CCEE-EEecCHhHHH
Q 044321 383 --NGHI-VYQGPREYVL 396 (521)
Q Consensus 383 --~G~i-v~~G~~~~v~ 396 (521)
+|.. +.....++..
T Consensus 141 ~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 141 MRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EETTEEEEEECCHHHHH
T ss_pred ecCCEEEEEEEEcHHHH
Confidence 6654 3334444443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-13 Score=152.36 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=86.3
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCCC-CC----------------------ceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKLDSS-LK----------------------NRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l~~~-~~----------------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
++|+|||||||||||++|+|++.|. .+ ..+|++|+..+++.+||++++.++....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~- 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA- 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH-
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999998662 11 01566777667777888888776532110
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
... .++| ++++.++.
T Consensus 127 ---------------------------------------------------~~~-----------~~~s---~~~i~l~i 141 (608)
T 3szr_A 127 ---------------------------------------------------GEG-----------MGIS---HELITLEI 141 (608)
T ss_dssp ---------------------------------------------------CSS-----------SCCC---SCCEEEEE
T ss_pred ---------------------------------------------------CCc-----------cccc---hHHHHHHh
Confidence 000 0011 11122222
Q ss_pred HHcCCCcEEEEeCC------ChhhHHHHHHHHHHHHHH----cCCeEEEEEecChhH----HHhh--------cCeEEEE
Q 044321 324 MLVGPAQALFMDEI------SNSTTFQIVNSLRQFIHI----LEGTILISLLQPAPE----TYDL--------FDDIILI 381 (521)
Q Consensus 324 aLv~~P~iLlLDEP------Ts~~~~~i~~~L~~l~~~----~~~t~ii~i~h~~~~----~~~l--------~D~VivL 381 (521)
+....|+++|+||| |++++......+.+++.. ....++++++|+.+. +.++ ...|+|+
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 33458999999999 887665555555554443 235666777776541 2222 2468899
Q ss_pred eCCEEEEecCHhHHHHHH
Q 044321 382 SNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f 399 (521)
.++.++..|+.+++.+++
T Consensus 222 TK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 222 TKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp ECGGGSSSSSTTCCCCCC
T ss_pred cchhhcCcccHHHHHHHH
Confidence 998888777765554333
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-11 Score=113.97 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+-|++|++++|+||||||||||++.|++
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999999999999
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-12 Score=136.16 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=89.5
Q ss_pred CcceeeeeeEEEEeCCcE--EEEEcCCCChHHHHHHHHhCCCCC--C-----C----CceeeecCCccccCCCCHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRM--TLLLGPPGSVKTTLLLALAGKLDS--S-----L----KNRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~--~~LlGpnGSGKSTLLk~LaG~l~~--~-----~----~~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+..+ |++||++|++|++ ++|+||||||||||+++|+|..-. . . ...+|++|...+++.+||.+|+.
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEEC
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhh
Confidence 4445 9999999999999 999999999999999999997411 0 0 12377888877778899999887
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCc----ccccc----cc--
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDV----CADTM----VG-- 304 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~----~~dt~----vg-- 304 (521)
|+.... . ......+. .......+.+|... ++.. ..|+. +.
T Consensus 105 ~g~~~~---~-~~~~~~i~-------------------------~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI 155 (427)
T 2qag_B 105 FGDQIN---K-EDSYKPIV-------------------------EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFI 155 (427)
T ss_dssp CCC-CC---H-HHHSHHHH-------------------------HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEE
T ss_pred hhhccc---c-chhhhHHH-------------------------HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEE
Confidence 753210 0 00000000 00111223334333 4331 12222 10
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH 354 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~ 354 (521)
.+...+|+-.+ +.|+++|..+++++++|||+..++..-+..+.+.+.
T Consensus 156 ~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~ 202 (427)
T 2qag_B 156 APTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKIT 202 (427)
T ss_dssp CCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred eCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHH
Confidence 01123577666 789999999999999999999766554444444443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-12 Score=135.96 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=36.0
Q ss_pred eeeeeEEEEeC--CcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 173 ILKDVSGIIRP--GRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 173 iL~dVS~~I~~--Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+.+.|++.|.+ |+.++|+||||||||||+++|+|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35679999999 9999999999999999999999998875
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-12 Score=125.74 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.9
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.-..++|++++|+||||||||||+++|+|.++|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 346789999999999999999999999998875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-13 Score=124.87 Aligned_cols=61 Identities=21% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHHHcCCCcc-ccccccCccCCCCChHHHHH-HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHH
Q 044321 288 YILKILGLDVC-ADTMVGDEILRGISGGQRKR-VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFI 353 (521)
Q Consensus 288 ~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQR-vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~ 353 (521)
.++...+++.. ..+++ ..+|+||+|| +..+++++.+|.++++|||||+++...++.+.+.+
T Consensus 131 ~~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp HHHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHH
Confidence 34556676543 13333 3499999999 89999999999989999999987665444444443
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=133.58 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=57.9
Q ss_pred cCCCC-ChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGI-SGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~L-SGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+..| ||||||||+||++|+.+| ++|||||||+++|......+.+++..+ .+.+||+++|+.. +...||++++|+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~-~~~~~d~~~~~~ 471 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ-IAARAHHHYKVE 471 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH-HHHHSSEEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhCCEEEEEe
Confidence 45667 999999999999999999 999999999987765555544444322 1345555667755 556799999996
Q ss_pred CC
Q 044321 383 NG 384 (521)
Q Consensus 383 ~G 384 (521)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-12 Score=132.54 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=77.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCCC---CCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
+++.+++|.||+|||||||.+.|++++.+. .....+|+|++.+++ .++++++.+...-.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l~~~------------ 95 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKLLQG------------ 95 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGGGSS------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC-hHHHHHHhccccccchhhh------------
Confidence 357899999999999999999999987642 122344488877664 5788888775210000000
Q ss_pred hcCCCCCC-ChHHHHHHHhhhchhhhhHHHHHHHHcCCC--c--cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEE
Q 044321 259 AAGIKPDP-DIDVFMKAAATEGQEVSVITDYILKILGLD--V--CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333 (521)
Q Consensus 259 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~--~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLl 333 (521)
.+ .|+. +.+ .....++.+.-. . .....+. .+...+||||+||+.+|++.+.+|+|||
T Consensus 96 -~g-~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlI 157 (290)
T 1odf_A 96 -RG-LPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFI 157 (290)
T ss_dssp -SC-STTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEE
T ss_pred -cc-CcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEE
Confidence 00 0111 111 112234443221 0 0111111 2346799999999999833333999999
Q ss_pred EeCCChhhHH
Q 044321 334 MDEISNSTTF 343 (521)
Q Consensus 334 LDEPTs~~~~ 343 (521)
+||++++++.
T Consensus 158 lEG~~~~ld~ 167 (290)
T 1odf_A 158 LEGWFLGFNP 167 (290)
T ss_dssp EEESSTTCCC
T ss_pred EeCccccCCc
Confidence 9999996654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-14 Score=133.31 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHH------HHcCCCcEEEEeCCCh-hhHHHHHHHHHHHHHHcCCeEEEEEecC-hhHHHhhcCeEEEEeC
Q 044321 312 SGGQRKRVTTGE------MLVGPAQALFMDEISN-STTFQIVNSLRQFIHILEGTILISLLQP-APETYDLFDDIILISN 383 (521)
Q Consensus 312 SGGqrQRvaIAr------aLv~~P~iLlLDEPTs-~~~~~i~~~L~~l~~~~~~t~ii~i~h~-~~~~~~l~D~VivL~~ 383 (521)
|+|++|++.++. +++.+|+...+|+... ..... .+.+..+. . ...+++.++|. .+++.++||+|+ ++
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~-~-~~~~ii~tsh~~~~~~e~~~~~i~--~~ 170 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKG-I-DERYFYNTSHLQPTNLNDIVKNLK--TN 170 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTT-C-CTTSEEECSSSCGGGHHHHHHHHH--HC
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcC-C-CccEEEeCCCCChhhHHHHHHHHh--hC
Confidence 888888877777 7888887777775211 11112 33333331 1 23445555666 778999999999 99
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|+++..|+++-+
T Consensus 171 g~~~~~~~~~~~ 182 (189)
T 2bdt_A 171 PRFIFCMAGDPL 182 (189)
T ss_dssp GGGSCC------
T ss_pred CcEEEeecCCch
Confidence 999999987654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-12 Score=118.41 Aligned_cols=65 Identities=18% Similarity=0.033 Sum_probs=52.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------c------eeeecCCccccCCCCHHHHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------N------RCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~------~~~v~q~d~~~~~lTV~E~l~ 235 (521)
.+.++++|||+|++|++++|+||||||||||+++|+|.+ |..+ . ..+++|+..++ .+||.|++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTHHH
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHHHH
Confidence 346899999999999999999999999999999999988 5421 0 12467766666 899999885
Q ss_pred H
Q 044321 236 F 236 (521)
Q Consensus 236 f 236 (521)
+
T Consensus 97 ~ 97 (158)
T 1htw_A 97 F 97 (158)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.1e-12 Score=129.34 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
+++++|+.|++|++++|+||||||||||+++|+|+++|. .+...+.... ++.... .+ ..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~----e~~~~~-----~~-~~---------- 222 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVP----ELFLPD-----HP-NH---------- 222 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSS----CCCCTT-----CS-SE----------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCcc----ccCccc-----cC-CE----------
Confidence 349999999999999999999999999999999998875 3333333211 110000 00 00
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc-CccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG-DEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg-~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
+++ +- .+...+++++...+..|+.++..+|+.
T Consensus 223 ----------------------------------------v~~-------v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 223 ----------------------------------------VHL-------FYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp ----------------------------------------EEE-------ECC----------CCHHHHHHHHTTSCCSE
T ss_pred ----------------------------------------EEE-------eecCccccccccccCHHHHHHHHHhcCCCE
Confidence 000 00 000012356667899999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCC-eEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEG-TILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~-t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
+++||+.... +.+.|..+- .+. +++.++|. . .+...+||++.|..|.
T Consensus 256 ~l~~e~r~~~---~~~~l~~l~--~g~~~~l~t~H~-~-~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 256 ILLAELRGGE---AYDFINVAA--SGHGGSITSCHA-G-SCELTFERLALMVLQN 303 (361)
T ss_dssp EEESCCCSTH---HHHHHHHHH--TTCCSCEEEEEC-S-SHHHHHHHHHHHHTTS
T ss_pred EEEcCchHHH---HHHHHHHHh--cCCCeEEEEECC-C-CHHHHHHHHHHHHhcc
Confidence 9999998743 333444432 233 44555544 3 4777888988887663
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-12 Score=121.17 Aligned_cols=29 Identities=41% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|++++|+||||||||||+++|+|..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 47799999999999999999999999973
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-11 Score=129.55 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+|++++ +++|++++|+||||||||||+++|+|++.+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 677766 8999999999999999999999999988764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-12 Score=117.26 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.9
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566799999999999999999999999764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=118.51 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=70.2
Q ss_pred HHHHHHHcCCCc-------cccccccC----ccCCCCChHHHHHH------HHHHHHcCC-CcEEEEeCCChhhHHHHHH
Q 044321 286 TDYILKILGLDV-------CADTMVGD----EILRGISGGQRKRV------TTGEMLVGP-AQALFMDEISNSTTFQIVN 347 (521)
Q Consensus 286 ~~~iL~~lgL~~-------~~dt~vg~----~~~r~LSGGqrQRv------aIAraLv~~-P~iLlLDEPTs~~~~~i~~ 347 (521)
+..+++.+++.+ ..+..+.. ..+..|||||+||| ++|++|+.+ |++|||||||+++|.....
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 345677777655 11222222 34567999999988 567899999 9999999999999999888
Q ss_pred HHHHHHHHcC-CeEEEEEecChhHHHhhcCeEEEEe
Q 044321 348 SLRQFIHILE-GTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 348 ~L~~l~~~~~-~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+.+++.... ...|++++|+. ++..+||++++|+
T Consensus 325 ~l~~~l~~~~~~~~vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVKSIPQMIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCCSCSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhccCCeEEEEEChH-HHHhhCCEEEEEE
Confidence 8888776642 22455556665 4678999999997
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-11 Score=122.28 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=28.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
.++|++++|+||||||||||+++|+|++.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999988765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-12 Score=133.84 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=88.7
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----C--C-CceeeecCCccccCCCCHHHHHHHH---HHhcc
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----S--L-KNRCDISQHDVHIGEMTVRETLAFS---ARCQG 242 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~--~-~~~~~v~q~d~~~~~lTV~E~l~f~---~~~~~ 242 (521)
-++|+++++.|+.++|+|+|||||||||++|+|..+. . . ...+++.+.+. ..+++.++..+. ....+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhh
Confidence 4899999999999999999999999999999997421 0 0 11234444320 111222211110 00000
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.+. .+.+. ...++.++..+++. + ..+..||+|++|++.+|
T Consensus 225 L~~------------------------~fl~~--------~era~~lL~vvDls---~-----~~~~~ls~g~~el~~la 264 (416)
T 1udx_A 225 LGL------------------------EFLRH--------IARTRVLLYVLDAA---D-----EPLKTLETLRKEVGAYD 264 (416)
T ss_dssp SCH------------------------HHHHH--------HTSSSEEEEEEETT---S-----CHHHHHHHHHHHHHHHC
T ss_pred hhH------------------------HHHHH--------HHHHHhhhEEeCCc---c-----CCHHHHHHHHHHHHHHh
Confidence 000 00000 00112233333443 2 23345999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHH---HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 323 EMLVGPAQALFMDEISNSTTF---QIVNSLRQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~---~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
++|+..|.+|++ +.+|. ...+.+.+.+...+.++++++.+....+.++++.
T Consensus 265 ~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 265 PALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 999999999998 32221 4445555555444556666665555555555543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-11 Score=129.41 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=34.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
-++|||.+++|++++|+||||||||||+++|+|++.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 36899999999999999999999999999999988654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-13 Score=127.38 Aligned_cols=121 Identities=18% Similarity=0.148 Sum_probs=70.6
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhc
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAA 260 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~ 260 (521)
.++|++++|+||||||||||+++|+|++.+.....++|++++.++.. +..+++.... ..+.+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~------------- 83 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETF------------- 83 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGB-------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH-HHHHHhcccc-cCCCCchh-------------
Confidence 47899999999999999999999999987541235778877655432 2222211000 00110000
Q ss_pred CCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH-HHHcCCCcEEEEeCCC
Q 044321 261 GIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG-EMLVGPAQALFMDEIS 338 (521)
Q Consensus 261 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA-raLv~~P~iLlLDEPT 338 (521)
+... ....+..+...+..++.+.+ ...++|+||+||+++| ++++.++.++++|||.
T Consensus 84 ------~~~~---------------~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 84 ------DFEG---------------FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp ------CHHH---------------HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ------hHHH---------------HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0000 01112211111222233333 2335899999999998 8888888888899974
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=114.65 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=32.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHH--HhCCCCCCC----CceeeecCCc
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLA--LAGKLDSSL----KNRCDISQHD 222 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~--LaG~l~~~~----~~~~~v~q~d 222 (521)
+-|++|++++|+||||||||||++. +++.+++.. ....|+..++
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5689999999999999999999994 456554421 2245665543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-11 Score=124.99 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=74.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-CCCC----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-SSLK----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-~~~~----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
.++++++. .+|++++|+||||||||||+|+|+|... +..+ ..++++|+..+++..+|+++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--
Confidence 45666664 4899999999999999999999999887 5421 11566777667777777763
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
. +.+.. . .+......++++.+|+....+..+. ++| ||
T Consensus 282 -~--l~~l~----------~------------------------~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~ 318 (358)
T 2rcn_A 282 -G--LWHLE----------P------------------------EQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GC 318 (358)
T ss_dssp -C--CCCCC----------H------------------------HHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TC
T ss_pred -h--hcCCC----------H------------------------HHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HH
Confidence 1 00100 0 0011123456777888877776654 599 99
Q ss_pred HHHHHHHHHHc
Q 044321 316 RKRVTTGEMLV 326 (521)
Q Consensus 316 rQRvaIAraLv 326 (521)
+||++||++++
T Consensus 319 ~~r~ala~gli 329 (358)
T 2rcn_A 319 AIREAVENGAI 329 (358)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHhcCC
Confidence 99999999875
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-11 Score=121.09 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh---CCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALA---GKLDSS 211 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~La---G~l~~~ 211 (521)
++++++|+||||||||||+++|+ |+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999 987653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-12 Score=117.18 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=27.5
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 298 CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 298 ~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+|+.+++ +|||||+||++|||+++.+|++
T Consensus 95 g~dt~i~E----glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 95 DYDLVITE----GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp TCSEEEEE----SCGGGCCCEEEECSSGGGGGGG
T ss_pred CCCEEEEC----CcCCCCCcEEEEEecccCCCcc
Confidence 57999987 5999999999999999999986
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-12 Score=131.25 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhc
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF 375 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~ 375 (521)
.+|+||+||+..+++++.+|+++ ||| ..+.+.|+++. .+.+|+.++|....+..++
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~l~---~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLARIN---ARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHHHC---SSSCEEECCSSCCCGGGGS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHHhC---CCCeEEEecccCCCHHHHh
Confidence 48999999998888888998887 888 55666666542 2344455555433333344
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=9.2e-12 Score=131.73 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=35.5
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+|+++ + .++|++++|+|||||||||||++|+|.+.+.
T Consensus 154 ~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 154 HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 344588888 5 4899999999999999999999999988765
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=107.68 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=75.6
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHH
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRR 256 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~ 256 (521)
+++..++|++++|+|||||||||++..|++.+.+..+ ...+...|..- ....+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~lv~~D~~r--~~a~e------------------------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVVLAAADTFR--AAAIE------------------------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECTTC--HHHHH------------------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-EEEEEcccccc--HHHHH------------------------
Confidence 4566789999999999999999999999998765422 22222222110 00000
Q ss_pred HHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHH---HHHHHHcCCCcEEE
Q 044321 257 EKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV---TTGEMLVGPAQALF 333 (521)
Q Consensus 257 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRv---aIAraLv~~P~iLl 333 (521)
....+++.+|++. +...|||+.+++ ++++++..+|+++|
T Consensus 150 ----------------------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvI 191 (306)
T 1vma_A 150 ----------------------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVI 191 (306)
T ss_dssp ----------------------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred ----------------------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEE
Confidence 0112334456542 124789999999 89999999999999
Q ss_pred EeCCCh-hhHHHHHHHHHHHHH
Q 044321 334 MDEISN-STTFQIVNSLRQFIH 354 (521)
Q Consensus 334 LDEPTs-~~~~~i~~~L~~l~~ 354 (521)
+|+|.. ..+...++.|..+..
T Consensus 192 iDtpg~~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 192 IDTAGRLHTKKNLMEELRKVHR 213 (306)
T ss_dssp EEECCCCSCHHHHHHHHHHHHH
T ss_pred EECCCchhhHHHHHHHHHHHHH
Confidence 999976 455666666666543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=96.99 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=28.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55555 8999999999999999999999997644
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9e-10 Score=111.52 Aligned_cols=110 Identities=12% Similarity=0.015 Sum_probs=70.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccc-----cCCCCHHH
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVH-----IGEMTVRE 232 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~-----~~~lTV~E 232 (521)
.+.+|++++|+||||||||||+|+|+ .+.+..+ ..+|++|.+.. ++.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34569999999999999999999999 7765311 12677776533 267888 7
Q ss_pred HH--HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCC
Q 044321 233 TL--AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILR 309 (521)
Q Consensus 233 ~l--~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r 309 (521)
++ .|.. . ..+. -+..+.. ...+....++++++.++|.+ .++.++.
T Consensus 239 ~l~~~f~~-~----------~~~~--c~~~~~~--------------~~~e~~~~v~~~l~~~~L~~~~~~~~~~----- 286 (302)
T 2yv5_A 239 EVRNYFRE-F----------LRYQ--CKYPDCT--------------HTNEPGCAVKEAVKNGEISCERYKSYLK----- 286 (302)
T ss_dssp GGGGGCGG-G----------HHHH--HHSTTCC--------------SSSCTTCHHHHHHHTTSSCHHHHHHHHH-----
T ss_pred HHHHHHHH-H----------HHcc--CCCCCCC--------------CCCCCCCHHHHHHHcCCCCHHHHHHHHH-----
Confidence 77 3320 0 0000 0000000 01122335677899999986 6666654
Q ss_pred CCChHHHHHHHHHH
Q 044321 310 GISGGQRKRVTTGE 323 (521)
Q Consensus 310 ~LSGGqrQRvaIAr 323 (521)
.|||.++|++.|||
T Consensus 287 ~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 IIKVYLEEIKELCR 300 (302)
T ss_dssp HTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHhc
Confidence 49999999999986
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-08 Score=96.53 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCChhh------HHHHHHHHHHHHHHcCCeEEEEEecChhH--------HHhhcCeEEEEeC
Q 044321 327 GPAQALFMDEISNST------TFQIVNSLRQFIHILEGTILISLLQPAPE--------TYDLFDDIILISN 383 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~------~~~i~~~L~~l~~~~~~t~ii~i~h~~~~--------~~~l~D~VivL~~ 383 (521)
.+|+++++|+|++.. ..+.+..|.+++++.+.+++++. |.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~-h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS-QVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE-ECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe-cCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999832 24555666666666566666554 44333 4678999999974
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=108.42 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=102.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-ceeeecCCccccCCCCHHHHHHHH-HHhccCchhh
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-NRCDISQHDVHIGEMTVRETLAFS-ARCQGVGSRY 247 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-~~~~v~q~d~~~~~lTV~E~l~f~-~~~~~~~~~~ 247 (521)
+...|+++.+-+++|++++|.|+||+|||||+..|++...+..+ ...|++. +++..+...-. +...++...
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~------E~s~~~l~~r~~~~~~~~~~~- 261 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL------EMSAQQLVMRMLCAEGNINAQ- 261 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES------SSCHHHHHHHHHHHHHTCCHH-
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------CCCHHHHHHHHHHHHcCCCHH-
Confidence 45679999989999999999999999999999999885432111 1233322 34544322111 111111100
Q ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc-
Q 044321 248 EMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV- 326 (521)
Q Consensus 248 ~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv- 326 (521)
.+ ..+ ....+.. ..+...+..++..... +-+ ..++|++|.+ +.++.++
T Consensus 262 ----~l-----~~g---~l~~~~~------------~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~ 310 (454)
T 2r6a_A 262 ----NL-----RTG---KLTPEDW------------GKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQ 310 (454)
T ss_dssp ----HH-----HTS---CCCHHHH------------HHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHT
T ss_pred ----HH-----hcC---CCCHHHH------------HHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHH
Confidence 00 000 0010100 1122233333332211 111 2359999987 5666665
Q ss_pred -CCCcEEEEeCCChhh--------H----HHHHHHHHHHHHHcCCeEEEEEec-----------Ch-------hHHHhhc
Q 044321 327 -GPAQALFMDEISNST--------T----FQIVNSLRQFIHILEGTILISLLQ-----------PA-------PETYDLF 375 (521)
Q Consensus 327 -~~P~iLlLDEPTs~~--------~----~~i~~~L~~l~~~~~~t~ii~i~h-----------~~-------~~~~~l~ 375 (521)
.+|+++++|+++... . .++.+.|+.++++.+.++|++.|- |. ..+...|
T Consensus 311 ~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~a 390 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDA 390 (454)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHC
T ss_pred HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhC
Confidence 689999999988721 1 356677888877777776665541 21 1467789
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
|.|++|+.++.
T Consensus 391 D~vi~l~r~~~ 401 (454)
T 2r6a_A 391 DIVAFLYRDDY 401 (454)
T ss_dssp SEEEEEEETTC
T ss_pred CEEEEEecccc
Confidence 99999987653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.2e-11 Score=121.48 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=36.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+|+++|+.+.+|++++|+||||||||||+++|+|.+.|
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4689999999999999999999999999999999987644
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-11 Score=125.19 Aligned_cols=63 Identities=6% Similarity=0.095 Sum_probs=49.1
Q ss_pred CC--cEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEE-EEeCC-EEEEecCH
Q 044321 328 PA--QALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDII-LISNG-HIVYQGPR 392 (521)
Q Consensus 328 ~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Vi-vL~~G-~iv~~G~~ 392 (521)
+| +++++|||+...+.+.++.....+... ++++++ +|....+.++||++. +|.+| ++++.|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 88 999999999999888776655555443 233332 677888999999999 99999 99887764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-09 Score=104.94 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=22.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh-CCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA-GKLD 209 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La-G~l~ 209 (521)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5788999999999999999999999999999999 9873
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-09 Score=100.75 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=26.5
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|+.+++|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999863
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-08 Score=97.85 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=30.5
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChh
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAP 369 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~ 369 (521)
+..+|+++|+|||++ ++....+.|.+.+.+. ..+++|+++|...
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 788999999999999 7777777777777654 3556666666543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.6e-08 Score=97.57 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=79.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhc
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAA 260 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~ 260 (521)
.+|++++|+|||||||||++..|++.+.+..+ ...++..+. ...+..+.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~---~r~~a~eqL~~~~---------------------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT---YRIAAVEQLKTYA---------------------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC---SSTTHHHHHHHHH----------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc---ccchHHHHHHHHH----------------------
Confidence 47999999999999999999999998765322 334454432 1333444333211
Q ss_pred CCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh
Q 044321 261 GIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340 (521)
Q Consensus 261 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~ 340 (521)
+.+|++... ..+. ..-+.+|++ +.+|+++|+| |++
T Consensus 158 ------------------------------~~~gl~~~~----------~~~~-~~l~~al~~--~~~~dlvIiD--T~G 192 (296)
T 2px0_A 158 ------------------------------ELLQAPLEV----------CYTK-EEFQQAKEL--FSEYDHVFVD--TAG 192 (296)
T ss_dssp ------------------------------TTTTCCCCB----------CSSH-HHHHHHHHH--GGGSSEEEEE--CCC
T ss_pred ------------------------------HhcCCCeEe----------cCCH-HHHHHHHHH--hcCCCEEEEe--CCC
Confidence 112332110 0122 233555654 4899999999 553
Q ss_pred h---HHHHHHHHHHHHHHc--CCeEEEE-EecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 341 T---TFQIVNSLRQFIHIL--EGTILIS-LLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 341 ~---~~~i~~~L~~l~~~~--~~t~ii~-i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
. +...+..+.+++... ..+++++ .+|...++.+.++++..+..|.++..
T Consensus 193 ~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 193 RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 3 333444444443211 1233333 46666778888887766777777764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-07 Score=94.09 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=31.0
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+-+++|+++.|.||||||||||+..++...........|+..+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3688999999999999999999888875432222233555543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-08 Score=108.42 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=37.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
..+|+||||+|++ ++++|+|||||||||||++|+|++.|+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 3589999999999 999999999999999999999988775
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-09 Score=105.46 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=29.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
|.+.+|++++|+|||||||||||++|+|+..|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 345679999999999999999999999988764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-09 Score=108.33 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=35.5
Q ss_pred CcceeeeeeEEEEeCC-------cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 169 KHLTILKDVSGIIRPG-------RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~G-------e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+...+++++++.|++| +.++|+||||+|||||+++|+|.+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4456888999999876 899999999999999999999976
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-07 Score=92.56 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHH
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELT 254 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~ 254 (521)
+++++. +|++++|+|+||+||||++..|+|.+.+.. ....+...|..-+ .++ +. +
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~~~~-~~~-~q--l------------------ 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRP-AAR-EQ--L------------------ 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCSSCH-HHH-HH--H------------------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcccH-hHH-HH--H------------------
Confidence 678888 999999999999999999999999876532 2222222222100 000 00 0
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEE
Q 044321 255 RREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334 (521)
Q Consensus 255 ~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlL 334 (521)
..+.+..|++.... + .+-.-.+.+|.+|+.+...+++++|+
T Consensus 146 --------------------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~vii 186 (295)
T 1ls1_A 146 --------------------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILV 186 (295)
T ss_dssp --------------------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --------------------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 00122344442210 0 01233456788999998899999999
Q ss_pred eCC-ChhhHHHHHHHHHHHHHH
Q 044321 335 DEI-SNSTTFQIVNSLRQFIHI 355 (521)
Q Consensus 335 DEP-Ts~~~~~i~~~L~~l~~~ 355 (521)
||| +.+++...+..+..+...
T Consensus 187 Dtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 187 DTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHH
T ss_pred eCCCCccccHHHHHHHHHHhhh
Confidence 998 888887777777776543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-08 Score=101.98 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=26.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+|++++|+||||||||||+++|+|++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999999876
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.8e-08 Score=104.87 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=28.2
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.+++.+.++..++|.|++||||||+|++|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4778889999999999999999999999875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-08 Score=101.92 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=38.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------c-eeeecCCccccC----CCCHHHH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------N-RCDISQHDVHIG----EMTVRET 233 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~-~~~v~q~d~~~~----~lTV~E~ 233 (521)
+.+.+|++++|+||||||||||+|+|+|...+..+ . .+++.|.+.... .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45668999999999999999999999998754310 0 257777765443 6788 88
Q ss_pred HH
Q 044321 234 LA 235 (521)
Q Consensus 234 l~ 235 (521)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 73
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-08 Score=107.40 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=43.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ 220 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q 220 (521)
+...+++++++.+.+|+.++|+||||+|||||+++|+|.+.+.......+.+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 4557899999999999999999999999999999999998765433334433
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.8e-07 Score=91.35 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=80.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...-|+.+.+-+.+|+++.|.|+||+|||||+..++...........|++ .+++..+...-..
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rll----------- 94 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRAL----------- 94 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHH-----------
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHH-----------
Confidence 45678888888999999999999999999999888763221111112222 2344443211000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
.....+.+....+ | .||+++.+|++.|...+.++
T Consensus 95 --------------------------------------s~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~ 128 (338)
T 4a1f_A 95 --------------------------------------SDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQK 128 (338)
T ss_dssp --------------------------------------HHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHS
T ss_pred --------------------------------------HHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcC
Confidence 0000001111000 2 49999999999999888899
Q ss_pred cEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEE
Q 044321 330 QALFMDEISNSTTFQIVNSLRQFIHILEGTILISL 364 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i 364 (521)
+++|.|+|..+. .++...++.+..+.++..+|++
T Consensus 129 ~l~I~d~~~~si-~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 129 KLFFYDKSYVRI-EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CEEEECCTTCCH-HHHHHHHHHHHHHCTTEEEEEE
T ss_pred CeEEeCCCCCcH-HHHHHHHHHHHHhcCCCCEEEE
Confidence 999999986543 3566667777665424444443
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-07 Score=98.88 Aligned_cols=34 Identities=38% Similarity=0.624 Sum_probs=28.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++++++.+++| ++|+||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 566677777777 8899999999999999999843
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=82.63 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHH--HhhcCeEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPET--YDLFDDIILIS 382 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~--~~l~D~VivL~ 382 (521)
.+.|+.+|..+++.+..+|..+.++ ++.+.+.+...+.+.+....+.++|+..+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678899999999888887643332 2344555655565555433333444444544443 56789888885
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.2e-07 Score=83.84 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=32.2
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+++++.+.+| +++|+||||||||||+++|++.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999 9999999999999999999997754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.3e-07 Score=85.50 Aligned_cols=40 Identities=28% Similarity=0.018 Sum_probs=24.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
....+++||||.+++|++++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3446899999999999999999999999999999999865
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-07 Score=87.24 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35899999999999999999999999764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.7e-07 Score=83.74 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=27.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++|++|++++|+||||||||||+++|++.+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999998855
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-05 Score=80.75 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=33.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+=+++|+++.|.||||||||||+..+++...+......|+...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3588999999999999999999999998654332334566554
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-07 Score=92.62 Aligned_cols=40 Identities=38% Similarity=0.445 Sum_probs=36.3
Q ss_pred cceeeeeeEEEEeC---CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 170 HLTILKDVSGIIRP---GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 170 ~~~iL~dVS~~I~~---Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...+|+|+||.|++ |++++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999 99999999999999999999998653
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-07 Score=99.00 Aligned_cols=41 Identities=22% Similarity=0.113 Sum_probs=38.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
.+++++++.+++|+.++|+|||||||||||++|+|+++|+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 57899999999999999999999999999999999997753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-06 Score=96.23 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCCh-hhHHHH-HHHHHHHHHHc-C-CeEEEEEecChhHHHhhcCeE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISN-STTFQI-VNSLRQFIHIL-E-GTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs-~~~~~i-~~~L~~l~~~~-~-~t~ii~i~h~~~~~~~l~D~V 378 (521)
-+|+|+.+|..++..++.+++++++|||.. +++... ...++.+.... + .+++++.|++...+.++++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 489999999999999999999999999996 666443 34444444332 2 355666788877777888753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-06 Score=80.79 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|++++|+||||||||||+++|++.+++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 6899999999999999999999997653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.1e-06 Score=83.63 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=76.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
....|+++.+-+.+|+++.|.|+||+|||||+..++...........|++ .+++..+...-...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~---------- 117 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIV---------- 117 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHH----------
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHH----------
Confidence 34578888888999999999999999999999887742211101112222 13444432211000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC--ccccccccCccCCCCChHHHHHHHHHHHHcC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD--VCADTMVGDEILRGISGGQRKRVTTGEMLVG 327 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~ 327 (521)
. ..|++ ...+ |. ..||+++.+|+..|...+.
T Consensus 118 ---------------------------------------~--~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~ 150 (315)
T 3bh0_A 118 ---------------------------------------T--AGSINAQKIKA---AR---RDFASEDWGKLSMAIGEIS 150 (315)
T ss_dssp ---------------------------------------H--HTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHH
T ss_pred ---------------------------------------H--HcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHh
Confidence 0 00111 0000 00 1289999999999988888
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGT 359 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t 359 (521)
++++++.|+|... -.++...++++..+.+..
T Consensus 151 ~~~i~i~d~~~~~-~~~i~~~i~~l~~~~~~~ 181 (315)
T 3bh0_A 151 NSNINIFDKAGQS-VNYIWSKTRQTKRKNPGK 181 (315)
T ss_dssp TSCEEEECCSCCB-HHHHHHHHHHHHHTSSSC
T ss_pred CCCEEEECCCCCC-HHHHHHHHHHHHHhcCCC
Confidence 8899999988643 344666667666544434
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.1e-05 Score=77.78 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=28.9
Q ss_pred eeeeeE-EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS-~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.|+.+- +-+++|+++.|.||+|||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 344442 57899999999999999999999988864
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=8.7e-07 Score=83.42 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=35.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+...+.+.+++..++|++++|+||||||||||+++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456677778889999999999999999999999999774
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.1e-07 Score=88.44 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+++++++.+++| ++|+||||||||||+++|+|.+.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 46899999999999 999999999999999999998765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-06 Score=79.73 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=27.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5.5e-05 Score=77.53 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=28.7
Q ss_pred eeeeE-EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 174 LKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 174 L~dVS-~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
|+.+- +-+++|+++.|.||||||||||+..|+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 56899999999999999999999988874
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-06 Score=78.99 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=24.9
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..++|++++|+||||||||||+++|+|.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566789999999999999999999999965
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-06 Score=91.03 Aligned_cols=38 Identities=37% Similarity=0.232 Sum_probs=35.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+|+++++.+++|++++|+||||||||||+++|+|.+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999999999999999999954
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.3e-05 Score=73.34 Aligned_cols=27 Identities=44% Similarity=0.637 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++..++|.||+|+|||||+++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999854
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-07 Score=91.45 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=41.8
Q ss_pred CcceeeeeeEEEEeCCc------EEEEEcCCCChHHHHHHHHhCCCCC--CCCceeeecCCccccC
Q 044321 169 KHLTILKDVSGIIRPGR------MTLLLGPPGSVKTTLLLALAGKLDS--SLKNRCDISQHDVHIG 226 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge------~~~LlGpnGSGKSTLLk~LaG~l~~--~~~~~~~v~q~d~~~~ 226 (521)
+....|++++..+..++ +++|+||||||||||+++|++++.. .......+.+++.+++
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence 33456666776666665 9999999999999999999998763 2333456666655443
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.83 E-value=6.1e-07 Score=87.10 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=29.2
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
++++.+ ++++|+|||||||||||++|+|.+.|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC
Confidence 566666 899999999999999999999988775
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=9.9e-06 Score=76.27 Aligned_cols=43 Identities=30% Similarity=0.116 Sum_probs=35.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIG 226 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~ 226 (521)
.+++|.+++|+|+||||||||++.|++.+. ...++++++.+++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccC
Confidence 567899999999999999999999999763 2367777766554
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.77 E-value=5.8e-05 Score=77.15 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCc--EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGR--MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge--~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999987654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=1e-05 Score=73.56 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.|++++|+||||||||||+++|++.+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.5e-06 Score=81.19 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=33.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+++++++.+++| ++|+||||+|||||+++|++.+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 35889999999999 99999999999999999999764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=6e-06 Score=79.57 Aligned_cols=30 Identities=27% Similarity=0.062 Sum_probs=27.1
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++..++|++++|.|+||||||||+++|+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999999999996
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.70 E-value=4.5e-06 Score=82.62 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=33.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+++++++.+++| ++|+||||||||||+++|++.+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 35789999999999 99999999999999999999764
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.5e-05 Score=72.78 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+|++++|+||||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2e-05 Score=71.11 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=23.8
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.+.+| +++|+|||||||||||.+|.-
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34455555 999999999999999999874
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.5e-05 Score=75.55 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...+|++++|+||||||||||++.|++.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334899999999999999999999999764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.1e-05 Score=76.98 Aligned_cols=27 Identities=33% Similarity=0.266 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHh---CCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALA---GKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~La---G~l 208 (521)
++|++++|+||||||||||+++|+ |+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 789999999999999999999999 753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.60 E-value=3.6e-05 Score=78.32 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++..++|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999855
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.59 E-value=1.6e-05 Score=74.86 Aligned_cols=30 Identities=27% Similarity=0.082 Sum_probs=26.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.++|++++|+|+||||||||+++|++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999997644
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00076 Score=69.53 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=25.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
=+++|+++.|.|++|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999887753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.48 E-value=2e-05 Score=80.31 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=34.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
++++++|.+++|++++|+||||+||||++..|++.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999999999987654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00014 Score=70.03 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCCh-hhHHHHH-HHHHHHHHHcC--CeEEEEEecChhHHHhhcCe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISN-STTFQIV-NSLRQFIHILE--GTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs-~~~~~i~-~~L~~l~~~~~--~t~ii~i~h~~~~~~~l~D~ 377 (521)
+.|.-.+.. ...+.+-+++++||... +.+.... ..++.+..... .+++++.|.+.+...++|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 345555543 33578899999999977 4665554 45555554432 35666777776666666654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00022 Score=70.86 Aligned_cols=27 Identities=44% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|...++|.||+|+|||||.++|++.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 345789999999999999999998654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00065 Score=67.91 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.++..++|.||||+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678899999999999999999999865
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00021 Score=73.47 Aligned_cols=55 Identities=5% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEe-CCChhhHHHH-HHHHHHHHHHc-CCeEEEEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMD-EISNSTTFQI-VNSLRQFIHIL-EGTILISL 364 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLD-EPTs~~~~~i-~~~L~~l~~~~-~~t~ii~i 364 (521)
..+|+|++|++. +.+...++-++++| ++..+.+.+. .+.+..+.... +..++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 358999998876 55556778889999 8776544332 33333333322 45555554
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00076 Score=67.98 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988774
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=2.8e-05 Score=82.45 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999854
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.35 E-value=8.1e-05 Score=71.90 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=27.6
Q ss_pred eeeeeEEEEe---CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 173 ILKDVSGIIR---PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 173 iL~dVS~~I~---~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4677777776 9999999999999999999999997754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00021 Score=73.90 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 499999999999999999999753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.33 E-value=3.3e-05 Score=84.27 Aligned_cols=32 Identities=34% Similarity=0.351 Sum_probs=29.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
.+++|++++|+|+||||||||+++|+|.+.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 57899999999999999999999999988764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0001 Score=69.71 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=23.6
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.+.+| +++|+|||||||||++.+|.-
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34455554 999999999999999999864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00045 Score=73.03 Aligned_cols=28 Identities=32% Similarity=0.170 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++.+++++|||||||||++..|++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=68.09 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=26.4
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.27 E-value=4.2e-05 Score=82.70 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
...++++++.+.+| +++|+|+|||||||||.+|.+.+
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678899999999 99999999999999999996653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=69.43 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+++|+|||||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.25 E-value=3.7e-05 Score=78.76 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=35.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578888888999999999999999999999999987644
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=67.47 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.++|+|+||||||||++.|+|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999997653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=66.76 Aligned_cols=28 Identities=36% Similarity=0.330 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++|++++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=62.03 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=38.3
Q ss_pred cCCCcEEEEeCCCh--------hhHHHHHHHHHHHHHHcCCeEEEEEecChh---------HHHhhcCeEEEEe
Q 044321 326 VGPAQALFMDEISN--------STTFQIVNSLRQFIHILEGTILISLLQPAP---------ETYDLFDDIILIS 382 (521)
Q Consensus 326 v~~P~iLlLDEPTs--------~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~---------~~~~l~D~VivL~ 382 (521)
..+|+++++|-.+. ....++...|+.++++.+.+++++.+...+ .....+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 46889999998554 234467777888888777777776543221 1345789988885
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=68.45 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999988663
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00099 Score=65.37 Aligned_cols=28 Identities=46% Similarity=0.644 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.++.-++|.||+|+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999865
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00095 Score=70.64 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=31.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
...|+.+.+-+++|+++.|.|+||+|||||+..++..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457777777999999999999999999999888763
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00057 Score=65.91 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
+++++++||.-. ++.+.++.+..+.. .+..+|++-+ ..++.+..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999754 33446667777665 3666666655 45677889999999975
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0002 Score=66.54 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999974
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0055 Score=61.88 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.|..-++|.||+|+|||||.++++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 466789999999999999999999854
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00029 Score=72.36 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
..+|+++++.++ .++|+|++|||||||++.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 468999999998 8999999999999999999994
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00016 Score=75.16 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=31.2
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|+++.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998854
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00028 Score=64.14 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999854
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0022 Score=67.15 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.=++|.||||+|||+|.++||+..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4444558999999999999999999854
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00024 Score=66.30 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00095 Score=67.05 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..+.|.||+|+|||||+++|++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999999854
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00028 Score=65.15 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=20.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 6789999999999999999874
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0051 Score=63.57 Aligned_cols=27 Identities=44% Similarity=0.569 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999977764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00032 Score=72.09 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+++.+++|+|+||||||||++.|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 35779999999999999999999996544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0001 Score=80.23 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=33.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4667777777 8999999999999999999999997754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.93 E-value=9.6e-05 Score=75.10 Aligned_cols=41 Identities=29% Similarity=0.580 Sum_probs=36.0
Q ss_pred CcceeeeeeEEEEeCCcE--EEEEcCCCChHHHHHHHHhCCCC
Q 044321 169 KHLTILKDVSGIIRPGRM--TLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~--~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++..+++.++..|+.|++ ++|.||||+||||+++++++.+.
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 345688888999999998 99999999999999999999653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=9e-05 Score=69.11 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=30.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888775 689999999999999999873
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00011 Score=75.69 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=32.3
Q ss_pred eeeeeeEEEEeCCcE--EEEEcCCCChHHHHHHHHhCCC
Q 044321 172 TILKDVSGIIRPGRM--TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~--~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 366777788888888 9999999999999999999965
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00017 Score=77.77 Aligned_cols=36 Identities=39% Similarity=0.615 Sum_probs=32.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++++++.+++| ++|+||||+|||||+++|+|...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999 99999999999999999999764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00043 Score=63.41 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00046 Score=63.56 Aligned_cols=29 Identities=45% Similarity=0.532 Sum_probs=25.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+|.+++|+|++||||||+.+.|++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999998654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00055 Score=70.67 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.4
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+++..+.+.+| +++|+|||||||||||.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35667777775 99999999999999999976
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00088 Score=71.17 Aligned_cols=28 Identities=43% Similarity=0.605 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4566678999999999999999999854
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00039 Score=65.59 Aligned_cols=30 Identities=30% Similarity=0.243 Sum_probs=26.7
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|.+++|+|++||||||+.+.|++.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999998764
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00042 Score=64.72 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++|+|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00035 Score=70.15 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999963
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=61.34 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.002 Score=68.02 Aligned_cols=28 Identities=43% Similarity=0.591 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4556678999999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00068 Score=61.58 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0028 Score=67.03 Aligned_cols=28 Identities=46% Similarity=0.733 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.=++|.||||+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5566779999999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00063 Score=61.11 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0095 Score=58.87 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.-++|.||+|+|||||.++|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999988754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0004 Score=67.41 Aligned_cols=35 Identities=40% Similarity=0.690 Sum_probs=24.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++++++.++.| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345556656555 89999999999999999998653
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.018 Score=61.57 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=29.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..-|+.+.+-+.+|+++.|.|+||+|||||+.-++-
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 345666655699999999999999999999876654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00087 Score=61.26 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998744
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0028 Score=64.23 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999998754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00078 Score=61.82 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0036 Score=64.18 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..-++|.||+|+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999999854
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00089 Score=64.30 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999744
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0046 Score=70.14 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.-++|.||+|+|||||.++|++.+
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555678999999999999999999865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00031 Score=68.52 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...++.++.|+|+|||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345778999999999999999999998764
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.003 Score=66.54 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 4555679999999999999999999854
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00097 Score=60.97 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999953
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=60.33 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=59.38 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 044321 186 MTLLLGPPGSVKTTLLLAL 204 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~L 204 (521)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.015 Score=70.64 Aligned_cols=34 Identities=35% Similarity=0.408 Sum_probs=28.3
Q ss_pred eeeeeE--EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVS--GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS--~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-|+.+- +=+++|+++.|.||||+|||||...++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466654 3599999999999999999999877765
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00037 Score=71.88 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.++++++|.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 345788888877 999999999999999998853
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.117 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998644
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=61.24 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|+|+||||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999998654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=60.80 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=63.83 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999643
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.006 Score=64.61 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+..-|+.+.+-+.+|+++.|.|+||+|||||+.-++.
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3456777777799999999999999999999877765
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=60.44 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=59.92 Aligned_cols=25 Identities=48% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+..++|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=59.16 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0039 Score=65.78 Aligned_cols=28 Identities=50% Similarity=0.716 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4556669999999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=60.20 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998553
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0015 Score=59.95 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998643
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0014 Score=64.09 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999854
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.023 Score=69.05 Aligned_cols=29 Identities=34% Similarity=0.419 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
=+++|+++.|.||||+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999987743
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=60.51 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0011 Score=69.93 Aligned_cols=35 Identities=26% Similarity=0.095 Sum_probs=31.4
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+++++. +|++++|+|+|||||||++..|++.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 577887 89999999999999999999999987654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=60.97 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0015 Score=61.07 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+.|+||||||||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357899999999999999987644
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00064 Score=62.73 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0016 Score=59.14 Aligned_cols=23 Identities=43% Similarity=0.431 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=60.20 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=58.84 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0018 Score=64.59 Aligned_cols=27 Identities=37% Similarity=0.348 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..|.++.|.||||||||||.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.002 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0021 Score=61.61 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999643
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=60.19 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998644
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.03 Score=57.70 Aligned_cols=27 Identities=48% Similarity=0.684 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++.-++|.||+|+|||||.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.18 E-value=0.00098 Score=66.95 Aligned_cols=35 Identities=26% Similarity=0.082 Sum_probs=30.5
Q ss_pred ee-eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 175 KD-VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 175 ~d-VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++ +++.++ |++++++|+||+||||++..|++.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 777776 999999999999999999999987654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0011 Score=61.83 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0022 Score=62.94 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47899999999999999999985
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0018 Score=67.57 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.0
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-..+..|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345677889999999999999999999996
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0021 Score=58.46 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.052 Score=66.90 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=28.5
Q ss_pred eeeeeE--EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVS--GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS--~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-|+.+- +=+++|+++.|.||||+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455553 35999999999999999999998877653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=59.94 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998643
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.021 Score=61.26 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+..-++|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999998754
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0072 Score=69.13 Aligned_cols=24 Identities=46% Similarity=0.555 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..++|.||+|+|||+|.++|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999865
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=58.01 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+-+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.003 Score=66.67 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999964
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0031 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998743
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0037 Score=55.70 Aligned_cols=23 Identities=48% Similarity=0.627 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=55.23 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0032 Score=57.44 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|++|+|||||++.|++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=58.57 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0033 Score=55.50 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0042 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0035 Score=60.11 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++..++.|+|||||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456788999999999999999998643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0037 Score=59.15 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.++.|+||+||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998644
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0037 Score=57.05 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0037 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998743
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.004 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0047 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++..++|.||+|+|||||++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998743
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0039 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988654
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0045 Score=60.44 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0043 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0039 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999854
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0043 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0036 Score=54.79 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0038 Score=54.85 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=57.36 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++|.|++||||||+.+.|+-.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999998643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0039 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.014 Score=54.75 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
.+.+++++||.-- .+.+.++.++.+... +..+|++-. ..++.+..++|.|.-|.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999433 334457777777653 666666655 55678889999998875
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.005 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0031 Score=70.26 Aligned_cols=32 Identities=38% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|+.+++|+.++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678899999999999999999999997543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0041 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998854
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0061 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.-.++|+|++|+|||||++.|.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999884
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=60.95 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0077 Score=60.89 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=32.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
....+++..+.+ .|.-++|+|+||+|||||...|.+.
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346899988888 8999999999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.004 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=56.47 Aligned_cols=22 Identities=50% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999884
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0053 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0044 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0044 Score=56.53 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0054 Score=59.30 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++-.++|+||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0045 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0046 Score=55.31 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0046 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0063 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0049 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999854
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0047 Score=55.17 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999885
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0051 Score=55.63 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 689999999999999999985
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0051 Score=55.83 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999853
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0052 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.006 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0053 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0063 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|-.++|+|++||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998644
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0041 Score=56.00 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0056 Score=55.27 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0058 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0059 Score=55.75 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999884
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0063 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-++|+|++|+|||||++.|.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999998654
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0072 Score=57.47 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.011 Score=56.49 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
.+.++++.||. -..+.++++.+..++ ..+..+++.-. ..+..+..+||.|.-|.
T Consensus 100 ~~~dvV~IDEa-QFf~~~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 100 TNVDVIGIDEV-QFFDDEIVSIVEKLS-ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp TTCSEEEECCG-GGSCTHHHHHHHHHH-HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred cCCCEEEEech-hcCCHHHHHHHHHHH-HCCCEEEEeecccccccCCCccHHHHHHhcceEEEee
Confidence 47899999993 234446778888887 45777777644 24567788999999885
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.099 Score=55.25 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999875543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0059 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0064 Score=53.55 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999976
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0065 Score=59.37 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|||||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999995
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.032 Score=53.25 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
+.+++++||.-- .+.+.++.+..+.. .+..+|+.-. ..++.+..+||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999543 33344577777665 3667777666 67888999999999886
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0066 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0077 Score=57.09 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.|+|||||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998743
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0088 Score=55.40 Aligned_cols=24 Identities=42% Similarity=0.408 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+.|.||+|+|||||+++|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0067 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0067 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999999874
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0078 Score=60.32 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0079 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999995
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.007 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0079 Score=58.24 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.008 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
=.++|+|++|+|||||++.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999854
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0069 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.084 Score=65.10 Aligned_cols=36 Identities=33% Similarity=0.337 Sum_probs=31.9
Q ss_pred cceeeeeeE--EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 170 HLTILKDVS--GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 170 ~~~iL~dVS--~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
....|+++. +-+++|+.++|.||+|+|||||...+.
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 445788988 589999999999999999999998876
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.008 Score=56.50 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0069 Score=62.62 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..++|+||||||||||++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0072 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0088 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-+++|.|++||||||+.+.|+-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0097 Score=56.81 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.012 Score=55.62 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=30.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...++..-.. ..|..++|+||+|||||||...|+....
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456665555 4688999999999999999999987643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.007 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.052 Score=60.96 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||+|.++|+..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999855
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0075 Score=59.19 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0075 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0076 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0069 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999874
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0076 Score=55.00 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5799999999999999999873
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.009 Score=58.39 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.008 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0093 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0081 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0081 Score=53.92 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..+.|.||+|+|||||++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0088 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0077 Score=62.27 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|+||+|||||+++|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0079 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999874
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0086 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999874
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0082 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0088 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0095 Score=58.97 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.006 Score=57.03 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0093 Score=58.75 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999953
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=58.64 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.|.|+|||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.009 Score=54.59 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999976665
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0097 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0087 Score=57.66 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=21.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+|.++.|.|++||||||+.+.|+-.+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998755
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0099 Score=59.04 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999963
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=56.67 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..-++|.||+|+|||||+++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0094 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0084 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.01 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999963
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0098 Score=54.11 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998843
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0091 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=54.71 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.013 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0094 Score=53.56 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0093 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=54.74 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=61.68 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+..++.|+|+|||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999998643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0095 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=55.82 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999884
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.013 Score=55.70 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+|.+++|.|++||||||+++.|+-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.95 E-value=0.01 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999843
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.01 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.01 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.011 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999874
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.011 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998843
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=60.68 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
|-.++|+|.||+|||||+++|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.011 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.016 Score=59.16 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++.+++|+||+|||||||...|+-.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999998644
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=57.93 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0089 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=9.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998763
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0071 Score=60.31 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+-+++|.||+||||||+.+.|+..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998743
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=59.00 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-|+.+-+-+.+|.++.|.||+|+|||||...++.
T Consensus 112 ~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3444436799999999999999999999998875
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=53.83 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.0096 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.012 Score=54.57 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=56.13 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987653
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.014 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999988864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=53.35 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=34.2
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec---------ChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ---------PAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h---------~~~~~~~l~D~VivL~ 382 (521)
.+++++++||.-. .+...++.|..+... +..++++-+. ..+....++|.|.-|.
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3578999999543 223466777777654 5666665552 2244566788887764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.014 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.0047 Score=62.10 Aligned_cols=23 Identities=48% Similarity=0.790 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||||+++|++.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.094 Score=50.64 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec---------ChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ---------PAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h---------~~~~~~~l~D~VivL~ 382 (521)
.+.+++++||.--..+ +.+.++.+ ...+..+|++-+. .++.+..+||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~--v~el~~~l-~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--IVEFCEAM-ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT--HHHHHHHH-HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh--HHHHHHHH-HhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999544332 44444443 3457777777666 7788899999999985
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.52 E-value=0.014 Score=53.81 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.019 Score=54.82 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=25.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.+|.++.|.|++||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999986653
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.079 Score=60.06 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++..-++|.||||+|||.|.++|++...
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 4445588999999999999999999653
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.02 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.++.|-|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.029 Score=51.98 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=26.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..++.. +.--.|.-++|.|+||+|||||...|..
T Consensus 5 ~~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345544 4445789999999999999999988865
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.018 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3789999999999999999997653
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.47 E-value=0.012 Score=57.19 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999988663
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.02 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|.+++|-|+.||||||+.+.|+-.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 66899999999999999999997653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=57.04 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+...++|.||+|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568888999999999999999854
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.0089 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.016 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.018 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.02 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.-+.|.||+|+|||+|.++|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4458899999999999999998754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.013 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999965
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.019 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.29 E-value=0.0092 Score=54.73 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=4.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998874
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.021 Score=57.95 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=57.46 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+.+++|+||+|||||||...|+-.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.019 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.+++..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999999999988743
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.021 Score=52.33 Aligned_cols=23 Identities=48% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.019 Score=53.15 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999873
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.0096 Score=57.70 Aligned_cols=22 Identities=55% Similarity=0.829 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999853
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.026 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999987553
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.02 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.023 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|.||+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 468999999999999999999864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=57.32 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|..++|.||+|+|||||.+.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998654
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.027 Score=59.90 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=28.5
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++.+ ..+-+|+.++|+||||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 55555 56668999999999999999999999874
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.021 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998853
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.026 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+||+||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.022 Score=60.30 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999994
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.96 E-value=0.028 Score=56.36 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..-++|.||+|+|||||.++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 55678999999999999999998753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.025 Score=55.01 Aligned_cols=25 Identities=44% Similarity=0.500 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+..-++|.||+|+|||||.++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3346889999999999999999874
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.022 Score=52.69 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.025 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.028 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.-+.|.||+|+|||||+++|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999865
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.033 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++|+||+|||||||...|+-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998754
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=1.7 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..+++|+|+.|.|||||.+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.037 Score=55.46 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.-+.|.||+|+|||+|+.+|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998743
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.033 Score=56.77 Aligned_cols=26 Identities=46% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.-++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999865
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.037 Score=56.52 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..-++|.||+|+|||||+++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.028 Score=53.46 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=22.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++...++|.||+|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444578999999999999999998743
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.032 Score=56.97 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|+|++|+|||||++.|++.+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.038 Score=57.75 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+++|+||+|||||||...|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 521 | ||||
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-16 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-15 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-15 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-14 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-14 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-14 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-13 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-13 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-12 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-10 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-08 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.003 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.003 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.004 |
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.1 bits (200), Expect = 6e-18
Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 22/237 (9%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
P+R +L+ ++ +RPG +T L+GP GS K+T+ L +
Sbjct: 22 PNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP---TGGQLLLDGKP 77
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
+ + R + VG ++ + A G+ P ++ AA G
Sbjct: 78 LPQYEHRY---LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH--- 131
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS---- 340
I GL DT V + + +SGGQR+ V L+ L +D+ +++
Sbjct: 132 -----SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 341 TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+ Q+ L + ++L+ + D I+ + G I G + ++E
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 79.4 bits (196), Expect = 2e-17
Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 35/250 (14%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTV 230
T + ++ I+ G +LLGP G KTT L +AG + ++ ++ G+ V
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--------PTEGRIYFGDRDV 70
Query: 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
V Y + +T E +I +K E+ +
Sbjct: 71 TYLPPKDRNISMVFQSYAVWPHMTVYE---------NIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE----ISNSTTFQIV 346
++L ++ + +SGGQR+RV +V L MDE + +
Sbjct: 122 ELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 347 NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFEC 406
+++ L+ T + E + D I +++ G ++ G V +
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLR 227
Query: 407 PKRKGVADFL 416
P VA F+
Sbjct: 228 PNSVFVATFI 237
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 77.9 bits (192), Expect = 1e-16
Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 22/228 (9%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
ILKD++ I G +G G K+TL+ + D++ + I +++
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY--------DVTSGQILIDGHNIKD 84
Query: 233 -TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
G+ + +L T +E +P + ++AA D+I+
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN-----AHDFIMN 139
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ 351
L DT VG+ ++ +SGGQ++R++ + + L +DE +++ + + +++
Sbjct: 140 ---LPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 352 FIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+ +L + T LI + T D I++I NGHIV G ++
Sbjct: 196 ALDVLSKDRTTLIVAHR--LSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 77.2 bits (190), Expect = 1e-16
Identities = 42/254 (16%), Positives = 93/254 (36%), Gaps = 28/254 (11%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
+ + L +VS + G++ ++G G+ K+TL+ + + +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
+ ++ E + + + +L+ T ++ + ++ T EV
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFG---------NVALPLELDNTPKDEVKR 119
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ 344
+L ++GL D+ + +SGGQ++RV L + L DE +++
Sbjct: 120 RVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 345 IVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKF 401
S+ + + + G ++ + + D + +ISNG ++ Q V
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV------ 228
Query: 402 MGFECPKRKGVADF 415
F PK F
Sbjct: 229 --FSHPKTPLAQKF 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 75.4 bits (185), Expect = 5e-16
Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 27/250 (10%)
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMT 229
+T ++++S ++ G +LLGP G KTT L +AG + S R I D + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYI 289
+ R + + L +I +K QE+ +
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYD--------NIAFPLKLRKVPRQEIDQRVREV 123
Query: 290 LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI---SNSTTFQIV 346
++LGL + + +SGGQR+RV G +V Q MDE ++ +
Sbjct: 124 AELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 347 NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFEC 406
+ + + G I + E + D I +++ G + G + V ++
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV--------YDK 230
Query: 407 PKRKGVADFL 416
P VA F+
Sbjct: 231 PANTFVAGFI 240
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 75.7 bits (186), Expect = 5e-16
Identities = 47/239 (19%), Positives = 100/239 (41%), Gaps = 29/239 (12%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
P R+ L++++ I G+ L+G GS K+T+ + D + I
Sbjct: 24 PGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHD 78
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
+ E T+ + V + + A + + +AA ++
Sbjct: 79 LREYTLAS---LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA-----RMAY 130
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS---- 340
D+I K +D DT++G+ + +SGGQR+R+ L+ + L +DE +++
Sbjct: 131 AMDFINK---MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 186
Query: 341 TTFQIVNSLRQFIHILEG--TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+ I +L + + + +++I+ T + D+I+++ +G IV +G +L
Sbjct: 187 SERAIQAALDE---LQKNRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 75.4 bits (185), Expect = 6e-16
Identities = 51/249 (20%), Positives = 86/249 (34%), Gaps = 48/249 (19%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS------------------- 211
L VS + G +TL++GP GS K+TL+ + G L +
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 212 -LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDV 270
Q + EMTV E L C G + + ++
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE---------- 126
Query: 271 FMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330
M A + IL+ L L D G+ +SGGQ K V G L+ +
Sbjct: 127 -MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 170
Query: 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388
+ MDE + + + + L +G + + + D + ++ NG I+
Sbjct: 171 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230
Query: 389 QGPREYVLE 397
+G E ++
Sbjct: 231 EGRGEEEIK 239
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 74.2 bits (182), Expect = 1e-15
Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 33/250 (13%)
Query: 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMT 229
+ + KD++ I G + +GP G K+TLL +AG I+ D+ IGE
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--------TITSGDLFIGEKR 63
Query: 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYI 289
+ +T V Y + L+ E ++ +K A + + ++ + +
Sbjct: 64 MNDTPPAERGVGMVFQSYALYPHLSVAE---------NMSFGLKLAGAKKEVINQRVNQV 114
Query: 290 LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI---SNSTTFQIV 346
++L L D +SGGQR+RV G LV +DE ++ +
Sbjct: 115 AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169
Query: 347 NSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFEC 406
+H G +I + E L D I+++ G + G + +
Sbjct: 170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL--------YHY 221
Query: 407 PKRKGVADFL 416
P + VA F+
Sbjct: 222 PADRFVAGFI 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 72.3 bits (177), Expect = 5e-15
Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 35/254 (13%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI-GEMT 229
ILK +S I G + L+GP G+ KTT L ++ + S V + G+
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI--------KPSSGIVTVFGKNV 66
Query: 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYI 289
V E + + E + A+ E+ + +
Sbjct: 67 VEEPHEVRKLISYLPEEAGAYRNMQGIE---------YLRFVAGFYASSSSEIEEMVERA 117
Query: 290 LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL 349
+I GL V S G +++ L+ + +DE ++ +
Sbjct: 118 TEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 350 RQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFEC 406
R+ + TIL+S E L D I LI NG IV G E + E
Sbjct: 173 RKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL--------KER 223
Query: 407 PKRKGVADFLQEVT 420
K + + + +EV
Sbjct: 224 YKAQNIEEVFEEVV 237
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.4 bits (177), Expect = 6e-15
Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 30/254 (11%)
Query: 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIG 226
+K + L +V+ I G +LGP G+ KTT + +AG S ++ D +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 227 EMTVRETLAFSARCQGVGSRYEMLAELTRRE-KAAGIKPDPDIDVFMKAAATEGQEVSVI 285
+ V + + LT E A + ++ E
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE------- 123
Query: 286 TDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI---SNSTT 342
+ KIL + + R +SG Q++RV LV L +DE ++
Sbjct: 124 ---VAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 343 FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFM 402
+L + + G L+ + + + + D + ++ G +V G E +
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL------- 228
Query: 403 GFECPKRKGVADFL 416
++ P VA +
Sbjct: 229 -YDNPVSIQVASLI 241
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 71.4 bits (175), Expect = 1e-14
Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 21/229 (9%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
IL+D+S +P + GP G K+T+ L + ++ I +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY--------QPTAGEITIDGQPID 67
Query: 232 ETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
+ R Q G S+ + T RE D + S + +
Sbjct: 68 NISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD 127
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR 350
++ +T VG E ISGGQR+R+ + + L +DE + S + + ++
Sbjct: 128 QL-------NTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 351 QFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+ + L T L+ + T D I I G I G ++
Sbjct: 180 KALDSLMKGRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.5 bits (175), Expect = 2e-14
Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 55/267 (20%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LKNRCDISQHDVHIGE 227
+LK+++ I G M + G GS KT+LL+ + G+L++S R I
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITD 287
T++E + F KA ++
Sbjct: 111 GTIKENIIFGVSYDEY--------RYKSVVKACQLQ------------------------ 138
Query: 288 YILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTF 343
I +T++G+ + +SGGQR R++ + A +D T
Sbjct: 139 --QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 195
Query: 344 QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE--------YV 395
Q+ S + + IL++ E D I+++ G + G +
Sbjct: 196 QVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFS 252
Query: 396 LEFFKFMGFECPKRKGVADFLQEVTSQ 422
+ + F+ + + L E +
Sbjct: 253 SKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 69.2 bits (169), Expect = 7e-14
Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 30/232 (12%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE 232
IL +++ I+ G + ++G GS K+TL + V I +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY--------IPENGQVLIDGHDLAL 69
Query: 233 -TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
+ R GV + +L + + + P ++ + AA G
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG---------AHD 120
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVN 347
+ + E G+SGGQR+R+ LV + L DE +++ + I+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 348 SLRQFIHILEG--TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
++ + I +G I+I+ T D II++ G IV QG + +L
Sbjct: 181 NMHK---ICKGRTVIIIA---HRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 66.5 bits (162), Expect = 5e-13
Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 21/229 (9%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTV 230
+ +K + + G++ L+G G+ KTT L A+AG L + K + + D+ V
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFNGQDITNKPAHV 77
Query: 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
+ + +G E+ A K I ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-------------FS 124
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR 350
L + G +SGG+++ + G L+ + L MDE S +V+ +
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 351 QFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+ I + EGT ++ + Q A + ++ G IV +G +L+
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 66.2 bits (161), Expect = 6e-13
Identities = 42/246 (17%), Positives = 81/246 (32%), Gaps = 36/246 (14%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRET 233
L ++S + G ++LGP G+ KT L +AG + + V +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH--------VPDSGRILLDGKDVTDL 67
Query: 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293
V Y + + ++ I + + L
Sbjct: 68 SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD------------TARDL 115
Query: 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI---SNSTTFQIVNSLR 350
++ D +SGG+++RV LV + L +DE + T + +
Sbjct: 116 KIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 351 QFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRK 410
+H ++ + E + D I ++ +G ++ G E + FE P
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI--------FEKPVEG 222
Query: 411 GVADFL 416
VA F+
Sbjct: 223 RVASFV 228
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 65.7 bits (160), Expect = 7e-13
Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 35/235 (14%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVR 231
T L +SG +R G + L+GP G+ K+TLL +AG I + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSAT 68
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
+ A + K ++ + +
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL-----------------NDVAG 111
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA-------LFMDEISNSTTFQ 344
L LD +SGG+ +RV +++ L +DE NS
Sbjct: 112 ALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 345 IVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
++L + + L +G ++ T L+ G ++ G RE VL
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 64.9 bits (158), Expect = 2e-12
Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 29/256 (11%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKNRCDISQHDVHIG 226
+LK VS R G + ++G GS K+T L + S + N +I+ G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 227 EMTVRETLAFSARCQGVG---SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
++ V + + + + + +T E + ++ +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--------EAPIQVLGLSKHDAR 126
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF 343
L +G+D A +SGGQ++RV+ L L DE +++
Sbjct: 127 ERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 182
Query: 344 QIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKF 401
++V + + + L EG ++ + + +I + G I +G E V
Sbjct: 183 ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV------ 236
Query: 402 MGFECPKRKGVADFLQ 417
F P+ + FL+
Sbjct: 237 --FGNPQSPRLQQFLK 250
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 58.3 bits (141), Expect = 3e-10
Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 22/233 (9%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224
++ + LK+V+ I+ G ++GP GS K+T+L + + ++ ++
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 225 IGEMTVRETLAFSARCQG-VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
++ E G V ++ ++ LT E +F A G+E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE------LPLIFKYRGAMSGEERR 122
Query: 284 VITDYILKILGL-DVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE----IS 338
LK+ L + A+ +SGGQ++RV L + D+ +
Sbjct: 123 KRALECLKMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 339 NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391
+ T +I+ L++ T+++ + II + +G + +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEK 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 51.8 bits (124), Expect = 2e-08
Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 60/210 (28%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----------LKNRCDI-- 218
+L+ ++ I G + GP G KTTLL ++ L K + I
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74
Query: 219 -SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
+ + +++V + L A GV + +
Sbjct: 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------------ 110
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
L+ + + + +S G +RV L+ A+ +D+
Sbjct: 111 ------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDP 152
Query: 338 SNS----TTFQIVNSLRQFIHILEGTILIS 363
+ + +++ S+ + + I+ S
Sbjct: 153 VVAIDEDSKHKVLKSILEILKEKGIVIISS 182
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.8 bits (108), Expect = 4e-06
Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 37/244 (15%)
Query: 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA 235
+V +LLGP G+ K+ L +AG + + +V + +
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAG-IV-------KPDRGEVRLNGADITPLPP 67
Query: 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL 295
V Y + L+ A E E + + LG+
Sbjct: 68 ERRGIGFVPQDYALFPHLSVYRNIA-----------YGLRNVERVERDRRVREMAEKLGI 116
Query: 296 DVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI---SNSTTFQIVNSLRQF 352
D +SGG+R+RV LV + L +DE + T ++ +F
Sbjct: 117 AHLLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171
Query: 353 IHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGV 412
+ ++ + E L D++ ++ NG IV +G + + K V
Sbjct: 172 VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS---------AKNGEV 222
Query: 413 ADFL 416
A+FL
Sbjct: 223 AEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 36.5 bits (83), Expect = 0.003
Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 51/214 (23%)
Query: 188 LLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRY 247
++ G PG KTTL+ + +L +V E R R +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKR----TGFRIITTEGKK 56
Query: 248 EMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307
++ + K ++ F
Sbjct: 57 KIFSSKFFTSKKLVGSYGVNVQYFE----------------------------------- 81
Query: 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEIS--NSTTFQIVNSLRQFIHILEGTILISLL 365
E + + +DEI + + + +RQ +H ++ ++
Sbjct: 82 ---ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI- 137
Query: 366 QPAPETYDLFDDIILISNGHIVYQGP--REYVLE 397
P + + L +I + ++ P R+ +LE
Sbjct: 138 -PIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.003
Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 1/128 (0%)
Query: 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFS 237
G I G +T + G + KT + LA +R ++I
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLP-IDRGGGEGKAMYIDTEGTFRPERLL 75
Query: 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297
A + G + + +A + A E + +I D + D
Sbjct: 76 AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 135
Query: 298 CADTMVGD 305
+
Sbjct: 136 SGRGELSA 143
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.004
Identities = 22/165 (13%), Positives = 45/165 (27%), Gaps = 11/165 (6%)
Query: 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ 220
+NIL + L V + G + L+ P G+ K+ L L LA ++
Sbjct: 6 INILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGEL 65
Query: 221 HDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQ 280
+ + + R L E+ + I
Sbjct: 66 PTGPVIYLP------AEDPPTAIHHRLHALGAHLSAEERQAVADGLLI-----QPLIGSL 114
Query: 281 EVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325
+ ++ + MV D + R + +++
Sbjct: 115 PNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 159
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.45 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.4 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.64 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.59 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.12 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.01 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.63 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.49 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.38 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.38 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.29 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.29 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.25 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.19 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.19 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.19 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.15 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.13 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.01 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.01 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.0 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.99 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.95 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.94 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.91 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.9 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.89 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.88 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.88 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.87 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.8 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.77 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.72 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.71 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.69 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.68 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.67 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.67 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.65 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.62 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.55 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.54 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.54 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.51 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.48 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.48 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.45 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.44 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.41 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.39 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.37 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.36 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.36 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.35 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.35 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.32 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.32 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.32 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.29 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.29 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.27 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.25 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.24 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.23 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.22 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.22 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.22 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.2 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.17 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.16 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.16 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.15 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.15 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.14 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.09 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.08 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.07 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.07 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.99 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.97 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.9 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.85 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.8 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.79 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.79 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.73 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.7 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.69 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.66 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.65 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.64 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.64 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.6 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.53 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.48 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.43 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.38 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.34 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.33 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.32 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.27 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.25 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.22 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.21 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.1 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.01 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.94 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.9 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.88 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.87 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.83 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.81 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.79 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.79 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.64 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.62 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.61 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.57 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.56 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.56 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.54 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.54 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.53 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.52 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.51 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.49 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.44 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.31 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.25 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.25 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.25 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.22 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.22 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.16 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.13 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.1 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.09 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.08 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.05 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.97 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.93 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.91 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.87 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.83 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.75 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.69 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.67 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.65 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.62 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.61 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.6 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.53 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.41 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.25 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.82 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.81 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.77 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.76 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.73 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.58 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.46 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.42 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.28 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.2 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.07 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.0 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.99 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.7 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.36 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.23 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.13 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.12 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.55 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.41 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.27 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.21 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.14 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.97 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.67 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.65 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.53 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.15 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.78 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.7 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.44 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.2 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.93 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.83 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 86.48 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.84 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.77 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.37 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.86 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.8 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 83.77 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.48 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.32 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 82.31 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.11 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.09 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.33 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.54 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.53 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.15 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.6e-46 Score=366.68 Aligned_cols=201 Identities=27% Similarity=0.366 Sum_probs=168.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------------CceeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------------KNRCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------------~~~~~v~q~d~~~ 225 (521)
+++++|+||||+|++||+++|+||||||||||+++|+|++.|+. +..+||+|++.++
T Consensus 14 g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~ 93 (240)
T d1g2912 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhc
Confidence 34579999999999999999999999999999999999998862 1238999999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+||.||+.|+....+... .+.+.+++++|+.+||.+..+.+++
T Consensus 94 ~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p~- 138 (240)
T d1g2912 94 PHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR- 138 (240)
T ss_dssp TTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG-
T ss_pred chhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh-
Confidence 99999999999877654321 1234467889999999998887765
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+++.++ .++++|++||+.+++..+||+|++|+
T Consensus 139 ----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~ 214 (240)
T d1g2912 139 ----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN 214 (240)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 49999999999999999999999999999988776655555554332 25667778899999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 383 NGHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
+|+|++.|++++++ ..|.+..+++|+
T Consensus 215 ~G~iv~~G~~~el~--------~~P~~~~~~~fi 240 (240)
T d1g2912 215 RGVLQQVGSPDEVY--------DKPANTFVAGFI 240 (240)
T ss_dssp TTEEEEEECHHHHH--------HSCSBHHHHHHS
T ss_pred CCEEEEEcCHHHHH--------hCCCCHHHHHhC
Confidence 99999999999984 467776666663
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-47 Score=368.49 Aligned_cols=200 Identities=23% Similarity=0.336 Sum_probs=131.9
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+++|+||||+|++||+++|+|||||||||||++|+|+++|+.+ ..+||+|++.+++.+||+
T Consensus 11 g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~ 90 (232)
T d2awna2 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 90 (232)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-------
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHH
Confidence 346799999999999999999999999999999999999988621 238999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|+..+.+.. ..+.+++++++|+.++|.+..++++. .|
T Consensus 91 eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~-----~L 131 (232)
T d2awna2 91 ENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPK-----AL 131 (232)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhCCChhhhhCChh-----hC
Confidence 9999986654321 12234567889999999998887765 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH----HHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL----RQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L----~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||||+|||||+.+|++|||||||+++|......+ +++.++ .++++|+++|+..++..+||+|++|++|+|+
T Consensus 132 SGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a~~~~dri~vm~~G~iv 210 (232)
T d2awna2 132 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 210 (232)
T ss_dssp --------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-SCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999998877655444 444443 3566677789999999999999999999999
Q ss_pred EecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 388 YQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 388 ~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
+.|+++++++ .|.+..+++|+
T Consensus 211 ~~G~~~el~~--------~P~~~~v~~fl 231 (232)
T d2awna2 211 QVGKPLELYH--------YPADRFVAGFI 231 (232)
T ss_dssp EEECHHHHHH--------SCSBHHHHHHS
T ss_pred EEeCHHHHHh--------CCCCHHHHHhc
Confidence 9999999953 57666666664
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.2e-46 Score=367.13 Aligned_cols=200 Identities=25% Similarity=0.325 Sum_probs=158.7
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E 232 (521)
++.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++.+++.+||+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 97 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE 97 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHH
T ss_pred CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHH
Confidence 45799999999999999999999999999999999999988631 2389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+.+.+++++|+.+||++..+.++. .||
T Consensus 98 nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 138 (239)
T d1v43a3 98 NIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYPA-----QLS 138 (239)
T ss_dssp HHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCTT-----TCC
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----hCC
Confidence 9999876554321 1234467889999999988887664 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++.++ .+++++++||+..++.++||+|++|++|+|++.
T Consensus 139 GGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~ 218 (239)
T d1v43a3 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 218 (239)
T ss_dssp SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999987776555554444332 256667778999999999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|++++++ ..|.+..++.|+
T Consensus 219 G~~~el~--------~~P~~~~~~~~l 237 (239)
T d1v43a3 219 GSPTEVY--------LRPNSVFVATFI 237 (239)
T ss_dssp ECHHHHH--------HCCSBHHHHHHS
T ss_pred cCHHHHH--------hCCCCHHHHHhh
Confidence 9999984 357665555553
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-46 Score=366.66 Aligned_cols=199 Identities=22% Similarity=0.288 Sum_probs=167.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~ 227 (521)
...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|+..+++.
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ 96 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccc
Confidence 45799999999999999999999999999999999999988621 23899999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+.+..+... .+.++++.++|+.+||.+..|.++++
T Consensus 97 ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~~-- 140 (242)
T d1oxxk2 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPRE-- 140 (242)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred ccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCChhh--
Confidence 999999999876554321 12344678899999999888877764
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|||||||||+|||||+.+|++|||||||+++|. ++.+.|+++.++. +++++++||+..++.++||+|++|++
T Consensus 141 ---LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~vm~~ 216 (242)
T d1oxxk2 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVK 216 (242)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ---CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999997665 4555555554443 55666778999999999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|+|++.|++++++ ..|.+..+++|+
T Consensus 217 G~iv~~g~~~el~--------~~P~~~~~~~fl 241 (242)
T d1oxxk2 217 GKLVQVGKPEDLY--------DNPVSIQVASLI 241 (242)
T ss_dssp TEEEEEECHHHHH--------HSCSSHHHHHHH
T ss_pred CEEEEEcCHHHHH--------hCCCCHHHHhcc
Confidence 9999999999984 467777777775
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-46 Score=362.50 Aligned_cols=197 Identities=22% Similarity=0.270 Sum_probs=164.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~ 227 (521)
...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|+..+++.
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~ 96 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCC
Confidence 34699999999999999999999999999999999999988621 13899999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||.||+.|+.+..+... ++...++.++|+.+||.+.++.+++
T Consensus 97 ~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~~--- 139 (240)
T d3dhwc1 97 RTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS--- 139 (240)
T ss_dssp SBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCBS---
T ss_pred ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh---
Confidence 999999999877654321 1234467889999999988877665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHH----HHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVN----SLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~----~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+|||||+.+|++|||||||+++|..... .|+++.++. ++++++++|+..++..+||+|++|++
T Consensus 140 --~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~vl~~ 216 (240)
T d3dhwc1 140 --NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISN 216 (240)
T ss_dssp --CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEEEEET
T ss_pred --hCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999987765544 444544332 56667778999999999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVAD 414 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~ad 414 (521)
|+|++.|+++++ |..|.+..+++
T Consensus 217 G~iv~~G~~~ei--------~~~P~~~~t~~ 239 (240)
T d3dhwc1 217 GELIEQDTVSEV--------FSHPKTPLAQK 239 (240)
T ss_dssp TEEEEEEETTTT--------TCSSCCTTTTC
T ss_pred CEEEEECCHHHH--------HhCCCChHHcC
Confidence 999999999998 66777665544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.6e-45 Score=356.86 Aligned_cols=195 Identities=22% Similarity=0.304 Sum_probs=163.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
.+|+||||+|++||+++|+||||||||||+++|+|++.|+.+ ..+||+|+..+|+.+||+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl 93 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHH
Confidence 489999999999999999999999999999999999988631 238999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.|+....+... .++++++++.+||.+..|.++++ ||||
T Consensus 94 ~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LSGG 131 (229)
T d3d31a2 94 EFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----LSGG 131 (229)
T ss_dssp HHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----SCHH
T ss_pred HHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChhh-----CCHH
Confidence 99876544311 12456788999999988877764 9999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||||+|||||+.+|++|||||||+++|......+.+++... .+++|++++|+..++..+||+|++|++|++++.|+
T Consensus 132 ~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~ 211 (229)
T d3d31a2 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211 (229)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEEC
T ss_pred HhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999988765555554444332 35667778899999999999999999999999999
Q ss_pred HhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 392 REYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 392 ~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
+++++ ..|....+++|+
T Consensus 212 ~~el~--------~~P~~~~v~~fl 228 (229)
T d3d31a2 212 PEEIF--------EKPVEGRVASFV 228 (229)
T ss_dssp HHHHH--------SSCCTTHHHHHH
T ss_pred HHHHH--------hCCCCHHHHhcc
Confidence 99984 467776677775
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-43 Score=341.83 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=147.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~ 226 (521)
...+|+||||+|++||+++|+|||||||||||++|+|++.|+.+ ..+||+|+..+++
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 96 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCc
Confidence 34689999999999999999999999999999999999988621 1389999999999
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~ 305 (521)
.+||.||+.|+......+.. + ..+....+.++|+.+||.+ .++.++.
T Consensus 97 ~~tv~eni~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~L~~~~~~~~p~- 144 (230)
T d1l2ta_ 97 LLTALENVELPLIFKYRGAM--------------------S-----------GEERRKRALECLKMAELEERFANHKPN- 144 (230)
T ss_dssp TSCHHHHHHHHHHTCCSSCC--------------------C-----------HHHHHHHHHHHHHHTTCCGGGTTCCGG-
T ss_pred CccHHHHHhHHHHHhccCCC--------------------C-----------HHHHHHHHHHHHHhhchhhhhhcCChh-
Confidence 99999999998765432210 0 0112234667899999976 4566554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.|||||||||+|||||+.+|++|||||||+++|... ++.|+++.++ .++++|++||+...+ ++||+|++|
T Consensus 145 ----~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a-~~~drv~~m 218 (230)
T d1l2ta_ 145 ----QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVA-RFGERIIYL 218 (230)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHH-TTSSEEEEE
T ss_pred ----hCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHH-HhCCEEEEE
Confidence 599999999999999999999999999999876654 4445554433 356666677887655 799999999
Q ss_pred eCCEEEEecCH
Q 044321 382 SNGHIVYQGPR 392 (521)
Q Consensus 382 ~~G~iv~~G~~ 392 (521)
++|+|+++|++
T Consensus 219 ~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 219 KDGEVEREEKL 229 (230)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEeccC
Confidence 99999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-42 Score=339.58 Aligned_cols=205 Identities=24% Similarity=0.265 Sum_probs=167.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lT 229 (521)
+++++||+||||+|++||+++|+||||||||||+++|+|++.|+.+ ..+|++|...+++.+|
T Consensus 12 yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~lt 91 (238)
T d1vpla_ 12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91 (238)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred ECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCcc
Confidence 3567899999999999999999999999999999999999988621 2389999999999999
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.||+.|...+.+... .+....++.+++.++|.+..+.++++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (238)
T d1vpla_ 92 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVST---- 133 (238)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhhh----
Confidence 9999999766543211 11233567788999999988887764
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+++|++|||||||+++|......+.+++++. .+++|++++|+.+++..+||+|++|++|+|+
T Consensus 134 -lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv 212 (238)
T d1vpla_ 134 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 212 (238)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999988876666555555432 3567777889999999999999999999999
Q ss_pred EecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 388 YQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 388 ~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+.|+++++.+.+ ...++.+++.++
T Consensus 213 ~~g~~~el~~~~--------~~~~~~~~f~~~ 236 (238)
T d1vpla_ 213 ETGTVEELKERY--------KAQNIEEVFEEV 236 (238)
T ss_dssp EEEEHHHHHHHT--------TCSSHHHHHHHH
T ss_pred EEcCHHHHHhcc--------CCchHHHHHHHh
Confidence 999999997642 234555555443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.2e-43 Score=344.29 Aligned_cols=200 Identities=23% Similarity=0.279 Sum_probs=160.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------cee
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------------NRC 216 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------------~~~ 216 (521)
+...||+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+
T Consensus 13 g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig 92 (258)
T d1b0ua_ 13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92 (258)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceE
Confidence 345799999999999999999999999999999999999987521 127
Q ss_pred eecCCccccCCCCHHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC
Q 044321 217 DISQHDVHIGEMTVRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL 295 (521)
Q Consensus 217 ~v~q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 295 (521)
||+|+..+++.+||.||+.|+.. ..+... .+....+.++++.+||
T Consensus 93 ~vfQ~~~l~~~~tv~env~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l 138 (258)
T d1b0ua_ 93 MVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVGI 138 (258)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEechhhccchhcchhhhhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 89999999999999999998742 222110 1223456778999999
Q ss_pred Ccc-ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhH
Q 044321 296 DVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPE 370 (521)
Q Consensus 296 ~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~ 370 (521)
.+. .+.+++ .|||||||||+|||||+.+|++|||||||+++|... .+.|+++.+ .+++|++++|+.++
T Consensus 139 ~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~--~g~til~vtHdl~~ 211 (258)
T d1b0ua_ 139 DERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGF 211 (258)
T ss_dssp CHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--TTCCEEEECSCHHH
T ss_pred chhhhccCcc-----cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc--cCCceEEEeCCHHH
Confidence 764 355554 599999999999999999999999999999776654 445555433 34567777899999
Q ss_pred HHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 371 TYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 371 ~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+..+||||++|++|+|++.|++++++ ..|.+..+++|+.
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~--------~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVF--------GNPQSPRLQQFLK 250 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHH--------HSCCSHHHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHH--------hCCCCHHHHHHHh
Confidence 99999999999999999999999994 3577666777764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9e-43 Score=341.16 Aligned_cols=188 Identities=23% Similarity=0.309 Sum_probs=151.5
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+..+|+.+
T Consensus 17 g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~l 96 (240)
T d1ji0a_ 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcc
Confidence 456799999999999999999999999999999999999988621 137899999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDVCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~ 307 (521)
||+||+.+......... ......+.+++.+ +|.+..+++++
T Consensus 97 tv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~--- 138 (240)
T d1ji0a_ 97 TVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG--- 138 (240)
T ss_dssp BHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS---
T ss_pred cHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhChHHHHhCchh---
Confidence 99999988654321110 0112234455555 67777777665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.++++++ .+++|++++|+.+++.++||+|++|++|+
T Consensus 139 --~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~ 216 (240)
T d1ji0a_ 139 --TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQ 216 (240)
T ss_dssp --SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 49999999999999999999999999999988776555555544432 35666777899999999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
|++.|+++++.
T Consensus 217 iv~~g~~~el~ 227 (240)
T d1ji0a_ 217 IVLEGKASELL 227 (240)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEEcCHHHHh
Confidence 99999999985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-42 Score=342.55 Aligned_cols=203 Identities=25% Similarity=0.345 Sum_probs=159.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+..+||+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+
T Consensus 15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~l 94 (254)
T d1g6ha_ 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94 (254)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCC
Confidence 456799999999999999999999999999999999999988631 137899999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.++....+........ . . ...+ ...+....+..+++.+++.+..|+++++
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~----~---~-~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 150 (254)
T d1g6ha_ 95 TVLENLLIGEICPGESPLNSLF----Y---K-KWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAGE--- 150 (254)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHH----H---C-SSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGGG---
T ss_pred eeeeeeeehhhhccccchhhhh----h---h-cccc-------------cHHHHHHHHHHHHHhcCcchhccCchhh---
Confidence 9999999976543321110000 0 0 0000 0112234567789999999988888775
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|||||||||+|||||+.+|++|||||||+++|......+.+++.++ .+++|++++|+.+++.++||+|++|++|+|
T Consensus 151 --LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 151 --LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp --SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred --CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999988775555444443322 467777789999999999999999999999
Q ss_pred EEecCHhHHHH
Q 044321 387 VYQGPREYVLE 397 (521)
Q Consensus 387 v~~G~~~~v~~ 397 (521)
+++|+++++..
T Consensus 229 v~~g~~~e~~~ 239 (254)
T d1g6ha_ 229 IAEGRGEEEIK 239 (254)
T ss_dssp EEEEESHHHHH
T ss_pred EEEecHHHHhh
Confidence 99999988643
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3e-42 Score=335.58 Aligned_cols=191 Identities=23% Similarity=0.309 Sum_probs=155.4
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
||||++. ||+++|+||||||||||+++|+|+++|+. +..+||+|++.+++.+||+||+.|+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhh
Confidence 8999995 68999999999999999999999998862 12389999999999999999999974
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
+. ... .+.++++.++++.+||.+..+.++. .||||||||
T Consensus 96 ~~--~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQR 134 (240)
T d2onka1 96 RN--VER----------------------------------VERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQR 134 (240)
T ss_dssp TT--SCH----------------------------------HHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHH
T ss_pred cc--cCH----------------------------------HHHHHHHHHHHHhcCcHhhhhCChh-----hCCHHHHHH
Confidence 31 110 1123457889999999998887765 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
|+|||||+.+|++|||||||+++|......+.+++.++ .++++|+++|+..++..+||+|++|++|++++.|+++++
T Consensus 135 vaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el 214 (240)
T d2onka1 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHH
Confidence 99999999999999999999987765555554444332 245566678999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHHH
Q 044321 396 LEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 396 ~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+. |+...++.|+.
T Consensus 215 ~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 215 FS---------AKNGEVAEFLS 227 (240)
T ss_dssp HH---------SCCSSHHHHGG
T ss_pred hc---------CCCHHHHHHhC
Confidence 53 33556777774
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-41 Score=333.00 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=144.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
...+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++.+ +..||
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~Ti 93 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL-LNRSI 93 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-TTSBH
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEeccccc-CCccc
Confidence 34699999999999999999999999999999999999988631 12899998765 46899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+... .+.+....+....+ . .+. .-.++...+|.+|. .+..
T Consensus 94 ~eNi~~~~~~-------------------------~~~~~~~~~~~~~~-----~-~~~--i~~~~~~~~t~i~~-~g~~ 139 (241)
T d2pmka1 94 IDNISLANPG-------------------------MSVEKVIYAAKLAG-----A-HDF--ISELREGYNTIVGE-QGAG 139 (241)
T ss_dssp HHHHCTTSTT-------------------------CCHHHHHHHHHHHT-----C-HHH--HTTSTTGGGSBCST-TTTC
T ss_pred cccccccCcc-------------------------ccHHHHHHHHHHHh-----h-HHH--HHhhhcchhhhcCC-CCCc
Confidence 9999885321 11111111111100 0 111 22466778888876 4678
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+|||||+.+|+||||||||+++|......+.+.+.+. ++.++|+++|+... ...||+|++|++|+|+++
T Consensus 140 LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~-~~~~D~i~vl~~G~Iv~~ 218 (241)
T d2pmka1 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST-VKNADRIIVMEKGKIVEQ 218 (241)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG-GTTSSEEEEEETTEEEEE
T ss_pred cCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999988777666665555443 34455566777654 478999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|++++++.
T Consensus 219 G~~~ell~ 226 (241)
T d2pmka1 219 GKHKELLS 226 (241)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99999964
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.7e-41 Score=331.32 Aligned_cols=212 Identities=21% Similarity=0.345 Sum_probs=159.6
Q ss_pred CCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChH
Q 044321 118 ISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVK 197 (521)
Q Consensus 118 ~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGK 197 (521)
++.....|+|+||+|.|. .....+|+||||+|++|++++|+|||||||
T Consensus 10 l~~~~g~I~~~nvsf~Y~--------------------------------~~~~~vL~~isl~i~~Ge~vaivG~sGsGK 57 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYN--------------------------------DNEAPILKDINLSIEKGETVAFVGMSGGGK 57 (255)
T ss_dssp CCCCSCCEEEEEEEECSC--------------------------------SSSCCSEEEEEEEECTTCEEEEECSTTSSH
T ss_pred CCCCCCEEEEEEEEEEeC--------------------------------CCCCcceeceEEEEcCCCEEEEECCCCCcH
Confidence 333445799999999862 123469999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 198 TTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 198 STLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
|||+++|+|++.|+.+ ..+||+|++.+| ..||+|||.|+...
T Consensus 58 STLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~------------------ 118 (255)
T d2hyda1 58 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPT------------------ 118 (255)
T ss_dssp HHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS------------------
T ss_pred HHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCC-CCCHHHHHhccCcC------------------
Confidence 9999999999998631 128999987655 67999999886311
Q ss_pred hcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCC
Q 044321 259 AAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS 338 (521)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPT 338 (521)
...+...++....+ ..+. ...|++.++|.+|+ .+..|||||||||+|||||+.+|+||||||||
T Consensus 119 -------~~~~~~~~al~~~~-----l~~~---i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpt 182 (255)
T d2hyda1 119 -------ATDEEVVEAAKMAN-----AHDF---IMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEAT 182 (255)
T ss_dssp -------CCHHHHHHHHHHTT-----CHHH---HHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred -------CCHHHHHHHHHHhC-----CHHH---HHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 11111111111110 1111 12577888999986 46679999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 339 NSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 339 s~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
+++|......+.+.+... .+.++|+++|+... ...||+|++|++|+|++.|+++++++
T Consensus 183 s~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~-~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 183 SALDLESESIIQEALDVLSKDRTTLIVAHRLST-ITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 998887777766666543 33445556677654 57899999999999999999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-40 Score=327.28 Aligned_cols=193 Identities=21% Similarity=0.296 Sum_probs=146.7
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++.+| ..||
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv 104 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSL 104 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBH
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhcccccccc-Ccch
Confidence 34699999999999999999999999999999999999998631 128999988765 5799
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+..... .......+.... ..... ..+|++..++.+++ .+..
T Consensus 105 ~eni~~g~~~~~------------------------~~~~~~~~~~~~------~~~~~--i~~l~~g~~~~i~~-~~~~ 151 (251)
T d1jj7a_ 105 QENIAYGLTQKP------------------------TMEEITAAAVKS------GAHSF--ISGLPQGYDTEVDE-AGSQ 151 (251)
T ss_dssp HHHHHCSCSSCC------------------------CHHHHHHHHHHH------TCHHH--HHTSTTGGGCBCCS-SCSS
T ss_pred hhhhhhhhcccc------------------------hHHHHHHHHHHH------HHHHH--HHhccccchhhHhc-cCcc
Confidence 999998632111 111111100000 01112 23577778888875 5678
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+|||||+.+|+||||||||+++|......+.+++.+. .++++|+++|+.. ..+.||+|++|++|+|+
T Consensus 152 LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-~~~~aDrI~vl~~G~iv 230 (251)
T d1jj7a_ 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS-LVEQADHILFLEGGAIR 230 (251)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH-HHHTCSEEEEEETTEEE
T ss_pred CChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH-HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887776666666433 2455566677775 45679999999999999
Q ss_pred EecCHhHHHH
Q 044321 388 YQGPREYVLE 397 (521)
Q Consensus 388 ~~G~~~~v~~ 397 (521)
++|+++++++
T Consensus 231 ~~Gt~~eLl~ 240 (251)
T d1jj7a_ 231 EGGTHQQLME 240 (251)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.3e-40 Score=325.25 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=156.4
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
++.+|+|+||+|.|. .+...+|+||||+|++|++++|+||||||||||
T Consensus 10 ~~g~I~~~nvsf~Y~--------------------------------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTL 57 (253)
T d3b60a1 10 ATGDLEFRNVTFTYP--------------------------------GREVPALRNINLKIPAGKTVALVGRSGSGKSTI 57 (253)
T ss_dssp CCCCEEEEEEEECSS--------------------------------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHH
T ss_pred CceEEEEEEEEEEeC--------------------------------CCCCceeeceEEEEcCCCEEEEECCCCChHHHH
Confidence 445799999999862 123469999999999999999999999999999
Q ss_pred HHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcC
Q 044321 201 LLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAG 261 (521)
Q Consensus 201 Lk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~ 261 (521)
+++|+|++.|+.+ ..+|++|++.+ +..|+++|+.|+.... .
T Consensus 58 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~~n~~~~~~~~-~------------------ 117 (253)
T d3b60a1 58 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHL-FNDTVANNIAYARTEE-Y------------------ 117 (253)
T ss_dssp HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCC-CSSBHHHHHHTTTTSC-C------------------
T ss_pred HHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeecccc-CCcchhhhhhhcCccc-C------------------
Confidence 9999999988631 12789997754 4679999998762111 0
Q ss_pred CCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhh
Q 044321 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNST 341 (521)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~ 341 (521)
+.+.+.++....+ ..+ .++ .|+...+|.+++ .+..|||||||||+|||||+.+|+||||||||+++
T Consensus 118 -----~~~~i~~a~~~~~-----l~~-~i~--~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~L 183 (253)
T d3b60a1 118 -----SREQIEEAARMAY-----AMD-FIN--KMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 183 (253)
T ss_dssp -----CHHHHHHHHHTTT-----CHH-HHH--HSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSC
T ss_pred -----CHHHHHHHHHHHh-----HHH-HHH--hccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccC
Confidence 1111111111110 111 222 256677888886 56789999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 342 TFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 342 ~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
|......+.+.+..+ ++.++|+++|+...+ ..||+|++|++|+|+++|+++++++
T Consensus 184 D~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 184 DTESERAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp CHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 877666666555433 344555667877654 6899999999999999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-41 Score=332.48 Aligned_cols=189 Identities=21% Similarity=0.252 Sum_probs=140.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.||+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++.+|+ .||+
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 93 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIR 93 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHH
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCC-cchh
Confidence 4699999999999999999999999999999999999988631 1289999887665 5999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.++...... .+...++... +...-....+++..++.+|+ .+..|
T Consensus 94 eNi~~~~~~~~~------------------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~-~g~~L 140 (242)
T d1mv5a_ 94 ENLTYGLEGDYT------------------------DEDLWQVLDL--------AFARSFVENMPDQLNTEVGE-RGVKI 140 (242)
T ss_dssp HHTTSCTTSCSC------------------------HHHHHHHHHH--------HTCTTTTTSSTTGGGCEEST-TSBCC
T ss_pred hheecccccccc------------------------hhhHHHHHHH--------HHhhhhhccCcccccccccC-CCCCC
Confidence 999775321110 0000000000 00000012456678888886 45679
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||||+|||||+.+|+||||||||+++|. .+.+.|+++. .+.++|+++|+...+ ..||+|++|++|+|+
T Consensus 141 SGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~---~~~Tvi~itH~l~~~-~~~D~i~vl~~G~iv 216 (242)
T d1mv5a_ 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTI-VDADKIYFIEKGQIT 216 (242)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHH-HHCSEEEEEETTEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc---CCCEEEEEECCHHHH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999997665 5666666653 234555567777655 569999999999999
Q ss_pred EecCHhHHHH
Q 044321 388 YQGPREYVLE 397 (521)
Q Consensus 388 ~~G~~~~v~~ 397 (521)
+.|+++++++
T Consensus 217 ~~G~~~eLl~ 226 (242)
T d1mv5a_ 217 GSGKHNELVA 226 (242)
T ss_dssp CCSCHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-37 Score=310.13 Aligned_cols=190 Identities=21% Similarity=0.255 Sum_probs=144.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------CceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------KNRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
.+||+||||+|++||+++|+||||||||||+++|+|+++|+. +..+|++|...+++ .||+||+.|+....
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~eni~~~~~~~--- 124 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP-GTIKENIIFGVSYD--- 124 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCS-EEHHHHHTTTSCCC---
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccC-ceeecccccccccc---
Confidence 479999999999999999999999999999999999999873 23489999876655 69999998863211
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
... .. ...+ ..........+.+..++.+++ .+..|||||||||+||||
T Consensus 125 -~~~----~~---------------~~~~-----------~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARa 172 (281)
T d1r0wa_ 125 -EYR----YK---------------SVVK-----------ACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARA 172 (281)
T ss_dssp -HHH----HH---------------HHHH-----------HTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHH
T ss_pred -chH----HH---------------HHHH-----------HHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHH
Confidence 000 00 0000 000112344677778888875 456799999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHH-HHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQF-IHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
|+.+|+||||||||+++|......+.+. +... .+.++|+++|+.+ ....||+|++|++|+|+++|++++++.
T Consensus 173 L~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~-~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME-HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH-HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999998876666543 2222 3445555667764 557899999999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-37 Score=299.60 Aligned_cols=179 Identities=26% Similarity=0.341 Sum_probs=141.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce--------------------eeecCCccccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR--------------------CDISQHDVHIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~--------------------~~v~q~d~~~~~lTV~ 231 (521)
++|+||||+|++||+++|+||||||||||+++|+|+.+ + .++ +|++|........++.
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~-~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G-KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C-SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C-ceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 46999999999999999999999999999999999764 3 222 4555555444556666
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+++.+... .....+.++++++.++|.+..++.++ .|
T Consensus 91 ~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 126 (231)
T d1l7vc_ 91 HYLTLHQH---------------------------------------DKTRTELLNDVAGALALDDKLGRSTN-----QL 126 (231)
T ss_dssp HHHHHHCS---------------------------------------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GC
T ss_pred HHhhhccc---------------------------------------hhhHHHHHHHHHHhcCCHhHhCcChh-----hc
Confidence 66554321 11123356778889999988887765 49
Q ss_pred ChHHHHHHHHHHHHcC-------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 312 SGGQRKRVTTGEMLVG-------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 312 SGGqrQRvaIAraLv~-------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
||||||||+||++|+. +|++|||||||+++|......+.+++++. .+++|++++|+.+++.++||+|++|+
T Consensus 127 SgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~ 206 (231)
T d1l7vc_ 127 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLK 206 (231)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEE
T ss_pred CHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 9999999999999986 67999999999988876655555554432 46677778899999999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|++++++
T Consensus 207 ~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 207 GGKMLASGRREEVL 220 (231)
T ss_dssp TTEECCCSBHHHHS
T ss_pred CCEEEEECCHHHHh
Confidence 99999999999984
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.6e-34 Score=272.60 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=127.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAFS 237 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f~ 237 (521)
+||+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+...+|+.+++.+.
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~ 94 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 94 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHH
Confidence 699999999999999999999999999999999999998632 126888988888899999999887
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
....+... + +..+...++.+++.+. +..++ .|||||||
T Consensus 95 ~~~~~~~~---------------------~---------------~~~~~~~l~~~~~~~~-~~~~~-----~LSgG~~q 132 (200)
T d1sgwa_ 95 ASLYGVKV---------------------N---------------KNEIMDALESVEVLDL-KKKLG-----ELSQGTIR 132 (200)
T ss_dssp HHHTTCCC---------------------C---------------HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHHH
T ss_pred HHhcCCcc---------------------C---------------HHHHHHHHHHcCCccc-ccccC-----cCCCcHHH
Confidence 65543211 0 0112345667776543 33444 59999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||+||+||+.+|++|||||||+++|. .+++.|.++.++ ++++|++.||+. .+||.+.+|++
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999997765 456666666554 456666666653 58999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.45 E-value=5.9e-16 Score=140.68 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCCh--hhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISN--STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs--~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.+|+|+++|.++++++..+|++|++|||.. ..+......+.+++... .++++.++|.. ....++|++..+.+|+++
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~-~~~il~~~h~~-~~~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPIR-DVHPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCSS-CCSHHHHHHHTCTTCEEE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccC-CCEEEEEEccH-HHHHhhceEEEEeCCEEE
Confidence 389999999999999999999999999876 45667778888876543 44455555553 456789999999999998
Q ss_pred EecC
Q 044321 388 YQGP 391 (521)
Q Consensus 388 ~~G~ 391 (521)
.-++
T Consensus 159 ~v~~ 162 (178)
T d1ye8a1 159 ELTP 162 (178)
T ss_dssp ECCT
T ss_pred EECC
Confidence 6553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=3.2e-08 Score=96.49 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCCCChHHHHHHHHHHH----HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE--
Q 044321 308 LRGISGGQRKRVTTGEM----LVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL-- 380 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAra----Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv-- 380 (521)
...+|+|||+.+.++.. ...++.++++|||.+++.+...+.|.++++.. ..+-+|++||. +.+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHs-p~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN-KIVMEAADLLHGVT 295 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC-TTGGGGCSEEEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECC-HHHHHhcccEEEEE
Confidence 45699999999877754 44677899999999998888777777766543 34556656554 577789999866
Q ss_pred EeCC
Q 044321 381 ISNG 384 (521)
Q Consensus 381 L~~G 384 (521)
+.+|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EeCC
Confidence 4555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=3e-06 Score=85.16 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=55.2
Q ss_pred CCCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 309 RGISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 309 r~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
..+|||||.++++|-.+ +.++++++||||+++++......+.+++... ..+-+|++||+ +.+.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~-~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK-NTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC-HHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCC-HHHHHhcccEEEE
Confidence 55899999998887443 4678899999999999987777777766543 34556666665 5788999998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.04 E-value=1.1e-05 Score=75.73 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=24.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
|=+|+++ .++++.|.|||.+||||+||.++=
T Consensus 27 VpNdi~~---~~~~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 27 VPNDLEM---AHELVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp CCEEEEE---SSCEEEEESCSSSSHHHHHHHHHH
T ss_pred ecceEEe---CCcEEEEECCCccccchhhhhhHH
Confidence 3355555 246999999999999999998763
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=1.9e-05 Score=74.58 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=25.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
|=+|+++. +.+.++.|.|||.|||||+||.++=
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEC-CCceEEEEeccCchhhHHHHHHHHH
Confidence 44566554 3357999999999999999998853
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.63 E-value=0.00038 Score=64.24 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.5
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+=+++|.++.|.||||||||||+.-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3488999999999999999999976654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.51 E-value=0.0011 Score=62.65 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=27.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-|+++.+=+.+|+++.|.|+||+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4454444478999999999999999999877764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=2.7e-06 Score=75.69 Aligned_cols=35 Identities=23% Similarity=0.095 Sum_probs=29.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356778888776 99999999999999999997543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.38 E-value=3.8e-05 Score=67.18 Aligned_cols=27 Identities=44% Similarity=0.518 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999998653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.38 E-value=0.0015 Score=59.13 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+=+++|+++.|.|+||+|||||+.-++
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999999985443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=5.1e-05 Score=65.91 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.29 E-value=5.4e-05 Score=67.71 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987553
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.25 E-value=0.00041 Score=65.43 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.-++|.||+|+|||+|.++|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 357899999999999999999743
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.19 E-value=7.7e-05 Score=64.98 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-++.|+|+|||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.0051 Score=57.45 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=24.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.+ +.||+++.|.|++|+|||||+-.|+-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhCC----ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45554 34699999999999999999876653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=7.6e-05 Score=65.04 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+.++.|+|||||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999865
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.15 E-value=9.1e-05 Score=64.67 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.00071 Score=63.82 Aligned_cols=23 Identities=52% Similarity=0.719 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|.||+|+|||+|.++|+..+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 36899999999999999999854
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.01 E-value=0.00016 Score=63.00 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999998755
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00013 Score=63.62 Aligned_cols=25 Identities=44% Similarity=0.624 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+.+.|.||||+|||||++.++..+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4588999999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.00 E-value=0.00015 Score=61.94 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00016 Score=67.62 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+|+.++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 47789999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.96 E-value=0.00017 Score=62.27 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.00086 Score=63.76 Aligned_cols=28 Identities=39% Similarity=0.637 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++..-++|.||+|+|||+|.++|++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3445568899999999999999999965
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.94 E-value=0.0002 Score=62.11 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.91 E-value=0.00018 Score=62.33 Aligned_cols=22 Identities=55% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998644
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00022 Score=65.53 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+|.++.|+||||||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999887643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00023 Score=70.74 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.8
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344556699999999999999999984
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.88 E-value=0.00022 Score=62.41 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++++|+|++|||||||+..|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999988876653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00027 Score=62.69 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.5
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+=|++|+++.|.||||||||||+.-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45889999999999999999999877753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.87 E-value=0.00024 Score=62.12 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++++|.|++||||||+.+.|+-.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00026 Score=60.23 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0002 Score=63.50 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.|-++.|+|+|||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.72 E-value=0.0003 Score=63.10 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4899999999999999999995
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.71 E-value=0.00027 Score=63.55 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.+.++.|+|||||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.69 E-value=0.00036 Score=62.43 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.68 E-value=0.00018 Score=67.35 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+|..++++|+||+|||||+|+|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 36788999999999999999999854
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.67 E-value=0.0022 Score=60.54 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|.||+|+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 47899999999999999999854
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.00037 Score=61.70 Aligned_cols=24 Identities=33% Similarity=0.182 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++||-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.65 E-value=0.00039 Score=63.90 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
+++|+||+|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.62 E-value=0.00048 Score=61.46 Aligned_cols=26 Identities=42% Similarity=0.555 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|=.+.|+||+||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667889999999999999999953
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00052 Score=61.52 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++.|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999855
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.54 E-value=0.00044 Score=60.86 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.54 E-value=0.00033 Score=62.14 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999884
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.0006 Score=59.65 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.48 E-value=0.047 Score=51.40 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=45.0
Q ss_pred HHHHH-HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhH
Q 044321 316 RKRVT-TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREY 394 (521)
Q Consensus 316 rQRva-IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~ 394 (521)
+++.. +-..|...+-+++||..-..... +.+ .. .+.-|+++|.+...+....+....+. +..=+.++
T Consensus 122 ~~~~~~~~~~L~~kr~LlVLDDv~~~~~~------~~~-~~-~~srilvTTR~~~v~~~~~~~~~~~~----l~~L~~~e 189 (277)
T d2a5yb3 122 VLKRMICNALIDRPNTLFVFDDVVQEETI------RWA-QE-LRLRCLVTTRDVEISNAASQTCEFIE----VTSLEIDE 189 (277)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECCHHHH------HHH-HH-TTCEEEEEESBGGGGGGCCSCEEEEE----CCCCCHHH
T ss_pred HHHHHHHHHHhccCCeeEecchhhHHhhh------hhh-cc-cCceEEEEeehHHHHHhcCCCCceEE----CCCCCHHH
Confidence 33433 44555566678899986543222 111 11 34445555665433233222222111 11235788
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHH
Q 044321 395 VLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 395 v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
..+.|...+|..|......+...
T Consensus 190 a~~Lf~~~~~~~~~~~~~~~~~~ 212 (277)
T d2a5yb3 190 CYDFLEAYGMPMPVGEKEEDVLN 212 (277)
T ss_dssp HHHHHHHTSCCCC--CHHHHHHH
T ss_pred HHHHHHHHhCCccCchhhHHHHH
Confidence 99999999998765544444433
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.00056 Score=60.17 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00064 Score=60.64 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998644
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.00057 Score=61.33 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00065 Score=60.81 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-++|+||||||||||++.|+-..+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999976543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.40 E-value=0.00058 Score=60.91 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.39 E-value=0.00057 Score=63.75 Aligned_cols=26 Identities=38% Similarity=0.388 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..++|.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999999999999997643
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00082 Score=60.00 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.36 E-value=0.00057 Score=59.55 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|.|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.36 E-value=0.00075 Score=58.93 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999765
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.00089 Score=60.99 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+=+++|+++.|.||+|||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999999987764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.00068 Score=57.53 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999984
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.32 E-value=0.00071 Score=57.56 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.|++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998763
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.00093 Score=59.25 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+-+++.++|+|||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999998854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00087 Score=58.59 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.29 E-value=0.0009 Score=59.24 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.29 E-value=0.00061 Score=60.14 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+||+|.+|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.27 E-value=0.01 Score=56.27 Aligned_cols=43 Identities=33% Similarity=0.377 Sum_probs=31.5
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+=|+.|.++-|.||+|||||||+..++...........|+.-+
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4578999999999999999999988776432222234566554
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.25 E-value=0.00093 Score=58.96 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|.+|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.24 E-value=0.00094 Score=58.36 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999997654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.23 E-value=0.00094 Score=60.02 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.22 E-value=0.00092 Score=58.60 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.22 E-value=0.001 Score=59.43 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++++|.||||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.22 E-value=0.00087 Score=57.32 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|.+|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.20 E-value=0.0011 Score=58.31 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++|+|.+|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999995
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0012 Score=56.71 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.0011 Score=57.85 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999999765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0011 Score=60.03 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999977553
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.15 E-value=0.0011 Score=58.49 Aligned_cols=22 Identities=59% Similarity=0.821 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998644
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0012 Score=59.60 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.||+||||||+-+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999855
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.14 E-value=0.00076 Score=66.17 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=28.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
.-++.|.-++|.||.||||||||++|.+.+++..
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 3445666789999999999999999999887653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0011 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.00066 Score=59.32 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++++|||||+++|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999885
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.08 E-value=0.0012 Score=59.19 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|||||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0013 Score=58.24 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.07 E-value=0.0013 Score=56.89 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.99 E-value=0.0015 Score=59.20 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|-||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999855
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.97 E-value=0.0018 Score=59.52 Aligned_cols=27 Identities=41% Similarity=0.401 Sum_probs=23.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 348899999999999999999986543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.92 E-value=0.0019 Score=58.54 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.8
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+=+++|+++.|.|++|+|||||+.-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.90 E-value=0.0016 Score=57.56 Aligned_cols=21 Identities=29% Similarity=0.135 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++.||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.0017 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.85 E-value=0.012 Score=59.00 Aligned_cols=28 Identities=43% Similarity=0.586 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++-++.|.||.||||||+|.++...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4566999999999999999999887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.80 E-value=0.0019 Score=56.09 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999984
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0023 Score=59.17 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+.|.||||+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0023 Score=58.61 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=24.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+=|++|+++.|.||||||||||...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999999987776
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.73 E-value=0.0021 Score=59.08 Aligned_cols=24 Identities=50% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++.||||+|||||.++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 378999999999999999997543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.00064 Score=58.44 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|.+|+|||||++.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999984
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.70 E-value=0.0022 Score=58.70 Aligned_cols=22 Identities=59% Similarity=0.764 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|.||+|+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0023 Score=62.25 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCCC--CCceeeecCCccccC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDSS--LKNRCDISQHDVHIG 226 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~~--~~~~~~v~q~d~~~~ 226 (521)
++||-|++|||||||.+.|..++... ......++.++.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECC
Confidence 78999999999999999988766422 122355677776654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.66 E-value=0.0023 Score=56.77 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.65 E-value=0.0023 Score=61.95 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|+.-++++||||+|||+|.|+|+..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 34456789999999999999999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0023 Score=62.73 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|.||||||||||++.|...+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.64 E-value=0.0021 Score=59.13 Aligned_cols=22 Identities=55% Similarity=0.756 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++.||||+|||||.++|++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999854
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.60 E-value=0.0029 Score=57.76 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|-++.|.|.||||||||.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.53 E-value=0.0026 Score=59.94 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999953
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.49 E-value=0.0023 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.48 E-value=0.0027 Score=54.88 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999998876
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.43 E-value=0.0034 Score=57.79 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+..++|.||+|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0037 Score=56.95 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.004 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.|.+++|-|+.||||||+++.|+-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.33 E-value=0.0033 Score=54.67 Aligned_cols=22 Identities=50% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999773
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0042 Score=58.64 Aligned_cols=27 Identities=41% Similarity=0.645 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++..-++|.||||+|||+|.++|+..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 344568899999999999999999754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.27 E-value=0.0039 Score=60.91 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-.++|.||+|||||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHH
Confidence 47899999999999999998864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0039 Score=56.83 Aligned_cols=22 Identities=50% Similarity=0.845 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999998743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0029 Score=57.74 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.21 E-value=0.0048 Score=56.70 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...++|.||+|+||||+++.|+..+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 34788999999999999999997654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0043 Score=53.95 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.01 E-value=0.0046 Score=53.70 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.97 E-value=0.0062 Score=55.65 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.+++++||+|+||||.+-=|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999876566543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0047 Score=53.42 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.90 E-value=0.013 Score=52.12 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=27.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..|+.....+ .|.-++|.|+||+|||||...|.-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566555555 899999999999999999987764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.88 E-value=0.0059 Score=55.08 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
++||.|+.||||||+.+.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0053 Score=53.63 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997665
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0053 Score=52.92 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987664
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.0065 Score=53.43 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988763
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.81 E-value=0.0061 Score=55.45 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+.|.||+|+||||+.++|+..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 678999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.80 E-value=0.0059 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++|+|.+.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999873
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.0057 Score=61.41 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999953
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.79 E-value=0.0016 Score=62.69 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=25.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccc
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH 224 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~ 224 (521)
++||.|+|||||||+.+.|.-.+.........+.+++.|
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 799999999999999999877553221122466776654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.007 Score=54.94 Aligned_cols=21 Identities=48% Similarity=0.806 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+.|.||+|+|||||+++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.0079 Score=51.99 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.61 E-value=0.0051 Score=56.85 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0069 Score=52.73 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998665
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.57 E-value=0.0051 Score=53.96 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.|.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 66999999999999998865
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.0066 Score=52.33 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++++|.+|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.0084 Score=54.23 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
++||.|+.||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.0064 Score=55.84 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+.|.||+|+||||+.++++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0085 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998853
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.54 E-value=0.0035 Score=60.96 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
-++|+||+|+|||||++.|++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4689999999999999999998865
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.0088 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999976654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.0069 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999987665
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.52 E-value=0.0092 Score=54.46 Aligned_cols=25 Identities=36% Similarity=0.268 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++++||+|+||||.+-=|+-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999887777544
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.0069 Score=52.26 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.007 Score=52.51 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0095 Score=54.22 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999876653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.011 Score=55.88 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=31.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCc
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHD 222 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d 222 (521)
+=|++|.++.|.||+|||||||+-.++...........|+.-+.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 56889999999999999999998776653322222345665543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.0081 Score=51.79 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.31 E-value=0.0087 Score=52.53 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.009 Score=51.49 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.009 Score=52.16 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998776
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.25 E-value=0.007 Score=52.63 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.+.+-
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.22 E-value=0.0095 Score=51.08 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.0088 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.011 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.0091 Score=53.05 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999997765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.10 E-value=0.012 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|-|+-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998755
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.0096 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.08 E-value=0.02 Score=50.84 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=25.8
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.|+. ++..-.|.-++|.|+||+|||||.-.|..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4553 34455788999999999999999887765
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.05 E-value=0.011 Score=56.92 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+||+|.|.+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999984
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.0081 Score=52.27 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=8.5
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.93 E-value=0.011 Score=54.15 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHcCCCcEEEEeCCCh-hhHHHHHHHHHHHHHH
Q 044321 320 TTGEMLVGPAQALFMDEISN-STTFQIVNSLRQFIHI 355 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs-~~~~~i~~~L~~l~~~ 355 (521)
..+.+...+-+++|.|=|=. ..+.+.++.+..+.+.
T Consensus 85 ~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~ 121 (213)
T d1vmaa2 85 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRV 121 (213)
T ss_dssp HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhh
Confidence 34556677889999995543 4667777777776543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.012 Score=50.80 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.012 Score=50.77 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.011 Score=51.45 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999988775
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.83 E-value=0.016 Score=50.47 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+||.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3589999999999999999999988654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.015 Score=55.68 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
++||-|++|||||||.+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.74 E-value=0.012 Score=59.87 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
=++++||+|||||-|.+.||+.+.-+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP 76 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP 76 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999987643
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.013 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987664
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.69 E-value=0.012 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-+||+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999974
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.014 Score=50.48 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998876
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.65 E-value=0.015 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+++++||+|+||||.+-=|+-.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999876666443
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.0096 Score=51.71 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.014 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999997654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.61 E-value=0.025 Score=49.77 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.|+. ++..-.|.=++|.|+||+|||||.-.|.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4454 55566889999999999999999876654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.60 E-value=0.014 Score=57.79 Aligned_cols=28 Identities=39% Similarity=0.283 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++..+++.||||+|||||.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677999999999999999999999764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.015 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999988774
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.014 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++++||+|+||||.+-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999886666544
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.015 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999987765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.015 Score=50.15 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999996644
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.41 E-value=0.018 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.33 E-value=0.017 Score=49.99 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999997765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.30 E-value=0.017 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.019 Score=50.43 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHh
Q 044321 187 TLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~La 205 (521)
++|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999883
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.026 Score=54.51 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|...++++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 33467899999999999999999754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.023 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
-++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997665
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.024 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999987654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.77 E-value=0.024 Score=51.57 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 044321 186 MTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~La 205 (521)
-++|||.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999998764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.023 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999999954
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.023 Score=48.80 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999997765
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.58 E-value=0.024 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+||+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999974
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.46 E-value=0.031 Score=52.85 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=29.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCc
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHD 222 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d 222 (521)
+=++.|.++.|.||+|+|||||+-.++...........|+.-+.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 35789999999999999999997655542211112335665543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.025 Score=49.90 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999977654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.03 Score=53.45 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.|-.|+..+|+|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 456799999999999999999998876
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.28 E-value=0.03 Score=48.94 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999975544
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.20 E-value=0.03 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.-+||||||+++|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.026 Score=51.58 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++.|.|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.00 E-value=0.032 Score=54.15 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=23.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
...+.| ++++.||||+|||.|.++|++.+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 66778999999999999999854
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.99 E-value=0.038 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999965
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.70 E-value=0.036 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.-+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.36 E-value=0.055 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-++|+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.23 E-value=0.048 Score=49.08 Aligned_cols=20 Identities=35% Similarity=0.170 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|..+||||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 78999999999999999964
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.13 E-value=0.047 Score=47.43 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|||..|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998865
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.12 E-value=0.05 Score=49.30 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4788999999999999999997654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.55 E-value=0.059 Score=48.82 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+.|.||+|+|||-|+++++-.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999999864
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.41 E-value=0.063 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++.||+|+||||+.++++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47899999999999999998754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.27 E-value=0.065 Score=46.28 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|||..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 68999999999999987754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.21 E-value=0.055 Score=50.49 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.6
Q ss_pred EEEEEcCCCChHHHHH
Q 044321 186 MTLLLGPPGSVKTTLL 201 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLL 201 (521)
-++|+|++||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4689999999999864
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.072 Score=48.67 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=26.6
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhH
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPE 370 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~ 370 (521)
.+++|+||... +..+..+.|++.+.+. ..+.+|.+++....
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccc
Confidence 47999999876 3445556777777654 45666666655443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.97 E-value=0.055 Score=51.07 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.8
Q ss_pred EEEEEcCCCChHHHHH
Q 044321 186 MTLLLGPPGSVKTTLL 201 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLL 201 (521)
.+.|.|++||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4779999999999865
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.67 E-value=0.077 Score=49.97 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+||+|.|||+++.-|+-++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999988754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.65 E-value=0.077 Score=49.91 Aligned_cols=20 Identities=50% Similarity=0.478 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 044321 186 MTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~La 205 (521)
-++|+|+.|||||||+.+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47899999999999999883
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=0.072 Score=52.65 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=17.5
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q 044321 185 RMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~La 205 (521)
+.++|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 358999999999999987543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.093 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+|+||+|.|||++..-|+-++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999888654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.78 E-value=0.092 Score=49.64 Aligned_cols=19 Identities=16% Similarity=-0.100 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 044321 186 MTLLLGPPGSVKTTLLLAL 204 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~L 204 (521)
-++|+|+.|||||||+..|
T Consensus 8 ni~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4799999999999999988
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.70 E-value=0.098 Score=50.27 Aligned_cols=25 Identities=44% Similarity=0.473 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.-.++++||+|+|||.|.+.|+-.+
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCcchHHHHHHHHHHHh
Confidence 3357899999999999999998754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.44 E-value=0.14 Score=48.42 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+.+-.|+..+|+|++|+|||||+.-|+-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5678899999999999999999877753
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.20 E-value=0.1 Score=46.57 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|..++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999763
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.93 E-value=0.12 Score=50.84 Aligned_cols=23 Identities=52% Similarity=0.719 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHhCCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++++||+|+|||-|.|.||-.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeeeCCCCccHHHHHHHHHhhcc
Confidence 67889999999999999997653
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=0.12 Score=50.49 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=16.8
Q ss_pred CcEEEEEcCCCChHHHHHH
Q 044321 184 GRMTLLLGPPGSVKTTLLL 202 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk 202 (521)
+.++.|.||+|+||||++.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCeEEEEcCCCCCceehHH
Confidence 5689999999999999874
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=86.48 E-value=0.089 Score=42.62 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.7
Q ss_pred EeCCcEEEEEcCCCChHHHHH
Q 044321 181 IRPGRMTLLLGPPGSVKTTLL 201 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLL 201 (521)
+++|+.+.|.+|+|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 467899999999999999543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.84 E-value=0.15 Score=48.99 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCChHHHHH
Q 044321 183 PGRMTLLLGPPGSVKTTLL 201 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLL 201 (521)
.|++.++.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5789999999999999965
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.77 E-value=0.16 Score=48.70 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.8
Q ss_pred eCCcEEEEEcCCCChHHHHH
Q 044321 182 RPGRMTLLLGPPGSVKTTLL 201 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLL 201 (521)
+.|++.++.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46889999999999999975
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.37 E-value=0.23 Score=46.31 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|-|.+|||||+|.|.|.-
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEEecCccchhhhhhhhhccc
Confidence 358999999999999999999954
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.86 E-value=0.3 Score=41.01 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCChHHH-HHHHHhC
Q 044321 184 GRMTLLLGPPGSVKTT-LLLALAG 206 (521)
Q Consensus 184 Ge~~~LlGpnGSGKST-LLk~LaG 206 (521)
|.+..|+||=.||||| |++.+-.
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~ 25 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHR 25 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHH
Confidence 7899999999999999 6676643
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.80 E-value=0.22 Score=47.77 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.0
Q ss_pred eCCcEEEEEcCCCChHHHHH
Q 044321 182 RPGRMTLLLGPPGSVKTTLL 201 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLL 201 (521)
+.|++.++.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36788999999999999997
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=83.77 E-value=0.21 Score=46.75 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++.|.||+++|||||+++|+..+
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999876
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.48 E-value=0.29 Score=44.07 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHh
Q 044321 187 TLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~La 205 (521)
++|+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999999884
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.32 E-value=0.33 Score=44.00 Aligned_cols=20 Identities=30% Similarity=0.179 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++++|...+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999954
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=82.31 E-value=0.17 Score=46.94 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=17.2
Q ss_pred EeCCcEEEEEcCCCChHHH
Q 044321 181 IRPGRMTLLLGPPGSVKTT 199 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKST 199 (521)
+.+|+.+.|.+|.|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4688999999999999997
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.11 E-value=0.22 Score=47.07 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+.|-.|+..+|+|++|+|||||+.-++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCccCCCEEEeecCCCCChHHHHHHHH
Confidence 567789999999999999999986554
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.09 E-value=0.19 Score=47.38 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+.|-+|+..+|+|++|+|||+|+..+.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred ccccCCceEeeccCCCCChHHHHHHHH
Confidence 467789999999999999999987543
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.33 E-value=0.3 Score=48.10 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=16.4
Q ss_pred EEEcCCCChHHHHHHHHhC
Q 044321 188 LLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 188 ~LlGpnGSGKSTLLk~LaG 206 (521)
+|+||+|.|||+++.-|+-
T Consensus 47 llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred eEECCCCCCHHHHHHHHHH
Confidence 6899999999999876664
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.54 E-value=0.3 Score=39.88 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHH
Q 044321 183 PGRMTLLLGPPGSVKTTLLLAL 204 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~L 204 (521)
..+...|.+|.|||||+++-.+
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHH
Confidence 3467789999999999987543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.53 E-value=0.37 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+.|=|+=||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 377889999999999999987653
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.15 E-value=0.5 Score=41.82 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=27.2
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChh
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAP 369 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~ 369 (521)
+.+|+++||... +..+..+.|.+.+.+. +.|+++.+++...
T Consensus 79 ~~KviIId~ad~-l~~~aqNaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 79 TRKYVIVHDCER-MTQQAANAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp SSEEEEETTGGG-BCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CCEEEEEeCccc-cchhhhhHHHHHHhCCCCCceeeeccCChh
Confidence 358999999554 4455666777777654 4676666666544
|