Citrus Sinensis ID: 044338

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700----
Protein Sequence
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKTKCRRMRRKIARELFPSNNHSNEQCNRHSRTGMGCKTQMPTWRCSDDDDESQEENNDKEDQIEGYSSENDKGCMYRLTDEETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAAINNPQWTHPNTLTHSAEEKDSLRIKSTSSDGSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEccHHHHHHHHHHHHHHccEEEEEEEEccEEEEEEEEccccccEEEEEEEEccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHcccccEEEEEEEEcccccEEEEEEEEEEcccHHHHHHHHcEEEEEEccEEEccccHHHHHHHHHHcccccEEEEEEEEEEEccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEEcccEEEEEEcccEEEEEEEEccEEEccccccccccccHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHccccccccccccHcccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHcccccccccccccccccccccccccccccccccccccccccEEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEEcccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHccccccccHHHHHEEEHHHHHHHHHHccccEEEEEccEEcccccEEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEEcccEEEEEEccccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
meedkqsgvvdrkrqtrqknggstkqtinktspeyirtrscgsrlrgnsandtdrpEQLLKTKCRRMRRKIARElfpsnnhsneqcnrhsrtgmgcktqmptwrcsddddesqeenndkedqiegyssendkgcmyrltdeetpchvgewfkfedpprhkmilyhgqrfrdvSHFRKAIEVFAICDGFKlcvmenrahvvsyecfdlrcdwkikaervvnGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRwklqpnlrtvdIRDEIKatygfkdemERINSRNIVLLEtkrheygevERFKRMFVCWERTSYAFKNQCRRLLAVDgwkinnpyNSVMLVAAAldgnngilpiAFCEVHVedldswhgeglcimgdgdngiDYAVEEFLPKTVYRQCCLKIFTEMVkrfpttpvehffwsacrstsaTSFNKYMDLIHNESEECHDWLLqtdwsswalftipkwvkctcvtlSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVeengtrlkltdtTSIIFDLNmeaqscncglwqisgipcahACKGIQLIMGNVEEYVDNMMSIQNFcsmytpgmmpfpkkhawkwgacnkllppmiesvntlsmkgsnesaSSRARQCiennsdaainnpqwthpntlthsaeekdslrikstssdgsl
Flexible Loop (DISEMBL)
meedkqsgvvdrkrqtrqknggstkqtinktspeyirtrscgsrlrgnsandtdrpeqllkTKCRRMRRKIarelfpsnnhsneqcnrhsrtgmgcktqmpTWRCSDDDDESqeenndkedqiegyssendkgCMYRLTDEETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRwklqpnlrtvdirDEIKAtygfkdemerinsrnivlletkrheygeverfKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLferrrievwnwyrekvtptvrevikdrtidgqrfvlveengtrlkltDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAAINNPQWTHPNTLthsaeekdslrikstssdgsl
Low Complexity Region (SEG)
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKTKCRRMRRKIARELFPSNNHSNEQCNRHSRTGMGCKTQMPTWRCsddddesqeenndkedqIEGYSSENDKGCMYRLTDEETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAAINNPQWTHPNTLTHSAEEKDSLRIKSTSSDGSL
Disordered region (IsUnstruct)
*************************************************************************************************************************************CMYRLTDEETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMIE**************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************************TWRCSD*****************************************EWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLP******************************************************************
Disordered Region (DISEMBL)
**************************TINKTSPEYIRTRSCGS*************EQLLKTKCRRMRRKIARELFPSNNHSNEQCNRHSRTGMGCKTQMPT*********************EGYSSENDKGCMYRLTDEETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQ************RSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMIESVNTLS************RQCIENNSDAAINNPQWTHPNTL*********************
Disordered Region (DISPRO)
************************************************************************************************************************************************CHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMI***************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKTKCRRMRRKIARELFPSNNHSNEQCNRHSRTGMGCKTQMPTWRCSDDDDESQEENNDKEDQIEGYSSENDKGCMYRLTDEETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWKWGACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAAINNPQWTHPNTLTHSAEEKDSLRIKSTSSDGSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
356565507	748	PREDICTED: uncharacterized protein LOC10	0.632	0.594	0.224	3e-37
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.643	0.421	0.228	4e-37
225450448	768	PREDICTED: uncharacterized protein LOC10	0.640	0.587	0.229	1e-36
225429092	583	PREDICTED: uncharacterized protein LOC10	0.649	0.783	0.235	1e-35
356548025	748	PREDICTED: uncharacterized protein LOC10	0.632	0.594	0.218	2e-35
449485027	844	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.632	0.527	0.222	6e-35
449441646	850	PREDICTED: uncharacterized protein LOC10	0.632	0.523	0.220	8e-35
147865779	1147	hypothetical protein VITISV_020810 [Viti	0.632	0.387	0.220	1e-34
225432189	746	PREDICTED: uncharacterized protein LOC10	0.632	0.596	0.220	1e-34
356521263	582	PREDICTED: uncharacterized protein LOC10	0.644	0.780	0.243	2e-34

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 218/513 (42%), Gaps = 68/513 (13%)

Query: 167 QRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N +H V+ +C    C W++ A R+   +   +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASRLSTTQLICI 245

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYG------- 277
            +    H C     +  +R+   W+ +I   + K  PN +  DI D+IK  YG       
Sbjct: 246 KKMHCDHTCEGSAVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 278 -------------------------FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 312
                                    F ++++  N  +     TK     E   F R+FV 
Sbjct: 306 AWRAKEIAREQLQGSYIEAYTQLPLFCEKIKETNPGSFATFTTK-----EDSSFHRLFVA 360

Query: 313 WERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH 372
           +  ++  F+  CR L+ +D   +N+ Y   +L A A+DGN+GI P+AF  V  E  D+W 
Sbjct: 361 FHASTSGFQLGCRPLIFLDTTPLNSKYQGELLAATAVDGNDGIFPVAFAVVDTETEDNWR 420

Query: 373 ------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVE 420
                        E +  + D  NG+  ++ +   K  Y   CL+   E + +       
Sbjct: 421 WFLQELKLATSTSEKITFVADFQNGLKKSLSDVFEK-CYHSYCLRHLAEKLNKDLKGQFS 479

Query: 421 HF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWV 470
           H         F++A  +    +F + ++ I   S E +DW++Q++   W  A F   ++ 
Sbjct: 480 HEARRFMVNDFYAAAYAPKLETFERSVENIKGISPEAYDWVIQSEPEHWANAFFNGARY- 538

Query: 471 KCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVR 530
               ++ +   +  +++ +  E+ I     A+     +    RR+E   W   K+TP+  
Sbjct: 539 --NLLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRRVESNQWMT-KLTPSKE 595

Query: 531 EVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKG 590
           E+++  T+      ++   G+  ++   +  I D+  +   C+C  WQ++G+PC HA   
Sbjct: 596 ELLQKETLVAPSLQVLFSQGSTFEVRGESVDIVDI--DNWDCSCKGWQLTGVPCCHAIAV 653

Query: 591 IQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
            + +  +  +Y     +++N+   Y   + P P
Sbjct: 654 FECVGRSPYDYCSRYFTVENYRLTYAESIHPVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 219/507 (43%), Gaps = 54/507 (10%)

Query: 166 GQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFI 225
           GQRF  V  FR+A+  +AI   F     +N +H V+ +C    C W+I A R+   +   
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 226 VTEFVAQHKCTRR--HQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYG------ 277
           + +  A H C        +Q    W+++I + + K+ PN +  DI ++IK  YG      
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 278 ----------------FKDEMERINSRNIVLLETKRHEYG-----EVERFKRMFVCWERT 316
                           +K+   ++      ++ET    +      E   F R+FV +  +
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSSFHRLFVSFHAS 383

Query: 317 SYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH---- 372
            Y F+  CR LL +D   + + Y   +L A A DG++G+ P+AF  V  E  D+WH    
Sbjct: 384 LYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNWHWFLL 443

Query: 373 --------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHF-- 422
                      +  + D + G+  ++ E   +  +   CL+  TE + +       H   
Sbjct: 444 QLKSALPTSRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKGQFSHEVK 502

Query: 423 ------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVT 476
                 F++A  +    SF + ++ I + S E ++WL+Q++  +WA     +  +   + 
Sbjct: 503 RLMVEDFYAAAYAPRPESFQRCLESIKSISLEAYNWLIQSEPMNWA-NAFFQGARYNHMA 561

Query: 477 LSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDR 536
            +  +   ++  +  E+ I      I     +LF  RR +   W   ++TP++ E ++  
Sbjct: 562 SNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTPSMEEKLEKE 620

Query: 537 TIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMG 596
           T+  +   ++   G   ++   T  + D++     C+C  WQ++G+PC HA   I  I  
Sbjct: 621 TVKVRPLQVLLSGGNTFEVRGDTIEVVDIDH--WDCSCKGWQLTGLPCCHAIAVISCIGQ 678

Query: 597 NVEEYVDNMMSIQNFCSMYTPGMMPFP 623
           +  EY     + +++   Y+  + P P
Sbjct: 679 SPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 220/509 (43%), Gaps = 58/509 (11%)

Query: 166 GQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFI 225
           GQRF  V  FR+A+  +AI   F     +N +H V+ +C    C W+I A R+   +   
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 226 VTEFVAQHKC--TRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIRDEIKATYG------ 277
           + +  A H C        +Q    W+++I + + K+ PN +  DI ++IK  YG      
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 278 ----------------FKDEMERINSRNIVLLETKRHEYG-----EVERFKRMFVCWERT 316
                           +K+   ++      ++ET    +      E   F R+FV +  +
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSSFHRLFVSFHAS 383

Query: 317 SYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH---- 372
            Y F+  CR LL +D   + + Y   +L A A DG++G+ P+AF  V  E  D+WH    
Sbjct: 384 LYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNWHWFLL 443

Query: 373 --------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHF-- 422
                      +  + D + G+  ++ E    + +   CL+  TE + +       H   
Sbjct: 444 QLKSALPTSRPITFVADREKGLRESIAEIFQGS-FHGYCLRYLTEQLLKDLKGQFSHEVK 502

Query: 423 ------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWVKCTC 474
                 F++A  +    SF + ++ I + S E ++WL+Q++  +W  A F   ++     
Sbjct: 503 RLMVEDFYAAAYAPRPESFQRCLETIKSISLEAYNWLIQSEPMNWANAFFQSARY---NH 559

Query: 475 VTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIK 534
           +  +  +   ++  +  E+ I      I     +LF  RR +   W   ++TP++ E ++
Sbjct: 560 MASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWMT-RLTPSMEEKLE 618

Query: 535 DRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLI 594
             T+  +   ++   G   ++   T  + D++     C+C  WQ++G+PC HA   I  I
Sbjct: 619 KETVKVRPLQVLLSGGNTFEVRGDTIEVVDIDH--WDCSCKGWQLTGLPCCHAIAVISCI 676

Query: 595 MGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
             +  EY     + +++   Y+  + P P
Sbjct: 677 GQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/513 (23%), Positives = 215/513 (41%), Gaps = 56/513 (10%)

Query: 166 GQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L ++++       +C    C W+I+A ++ N  TF 
Sbjct: 9   GQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLPNAPTFT 68

Query: 226 VTEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYGFK---D 280
           +      H C +  Q   H++   WI +    R +   N +  DI  +I   YG      
Sbjct: 69  IRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 281 EMERINSRNIVLL----------------ETKRHEYGEVE---------RFKRMFVCWER 315
           +  R   R +  +                E KR   G V          RF+R+FV +  
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTSGADNRFQRLFVSFYA 188

Query: 316 TSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSW---- 371
           + Y F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V  E+ +SW    
Sbjct: 189 SIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDESWMWFL 248

Query: 372 ------------HGEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPV 419
                       +   L  + DG  GI  AV+   P + +  C   +   + K F  + +
Sbjct: 249 SELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKEFKNSRL 308

Query: 420 EHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWAL--FTIPKWVKCTCVTL 477
            H  W A  +T+  +F + M  I   S E   W+ Q   S WAL  F   ++   +    
Sbjct: 309 VHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYFEGTRYGHLS---- 364

Query: 478 SITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRT 537
           S  ++   ++ +  E+ I      I       FE RR++  +W+   + P+  + + +  
Sbjct: 365 SNIEEFNKWILEARELPIIQVIEQIHSKLMAEFEERRLKSNSWF-SVLAPSADKRMMEAI 423

Query: 538 IDGQRFVLVEENGTRLK-LTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMG 596
                + ++  +    + L+   S I  +N+  Q C+C  WQ+ GIPC+HA   +     
Sbjct: 424 GRASTYQVLRSDEVEFEVLSAERSDI--VNIGTQCCSCRDWQLYGIPCSHAVAALLSCRK 481

Query: 597 NVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAWK 629
           +V  + +   ++ ++ + Y+  + P P K  W+
Sbjct: 482 DVYAFTEKCFTVASYRAAYSEEIRPIPCKIEWR 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548025|ref|XP_003542404.1| PREDICTED: uncharacterized protein LOC100776940 [Glycine max]

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 217/513 (42%), Gaps = 68/513 (13%)

Query: 167 QRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N +H V+ +C    C W++ A ++   +   +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASKLSTTQLICI 245

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYG------- 277
            +    H C     +  +R+   W+ +I   + K  PN +  DI D+IK  YG       
Sbjct: 246 KKMHCNHTCEGSVVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 278 -------------------------FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 312
                                    F ++++  N  +     TK     E   F R+FV 
Sbjct: 306 AWRAKEIAREQLQGSYKEAYTQLPLFCEKIKETNPGSFATFTTK-----EDSSFHRLFVA 360

Query: 313 WERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH 372
           +  +   F+  CR L+ +D   +N+ Y   +L A ++DGN+GI P+AF  V  E  D+WH
Sbjct: 361 FHASISGFQLGCRPLIFLDRTPLNSKYQGELLAAISVDGNDGIFPVAFAVVDTETEDNWH 420

Query: 373 ------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVE 420
                        E +  + D  NG+  ++ +   K  Y   CL+   E + +       
Sbjct: 421 WFLQELKLATSTSEQITFVADFQNGLKKSLSDVFEK-CYHSYCLRHLAEKLNKDLKGQFS 479

Query: 421 HF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWV 470
           H         F++A  +    +F + ++ I   S E +DW++Q++   W  A F   ++ 
Sbjct: 480 HEARRFMVNDFYAAAYAPKLETFERSIENIKGISPEAYDWVIQSEPEHWANAFFNGARY- 538

Query: 471 KCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVR 530
               ++ +   +  +++ +  E+ I     A+     +    R++E   W   K+TP+  
Sbjct: 539 --NLLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRQVESNQWM-TKLTPSKE 595

Query: 531 EVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKG 590
           E+++   +      ++   G+  ++   +  I D+  +   C+C  WQ++G+PC HA   
Sbjct: 596 ELLQKERLVAHSLQVLFSQGSTFEVRGESVDIVDI--DNWDCSCKGWQLTGVPCCHAIAV 653

Query: 591 IQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
            + +  +  +Y     +++N+   Y   + P P
Sbjct: 654 FECVGRSPYDYCSRYFTVENYRLTYAESIHPVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485027|ref|XP_004157051.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228329 [Cucumis sativus]

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/513 (22%), Positives = 214/513 (41%), Gaps = 68/513 (13%)

Query: 167 QRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 282 QRFNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKYQGCPWRIYASRLSTTQLICI 341

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYG------- 277
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG       
Sbjct: 342 KKMNTHHSCEGAAAKAGYRATRGWVGNIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 401

Query: 278 -------------------------FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 312
                                    F ++++  N  ++    TK     +   F R+FV 
Sbjct: 402 AWRAKEIAREQLQGSYKEAYNQLPYFCEKIKETNPGSVASFTTK-----DDSSFHRLFVS 456

Query: 313 WERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH 372
           +  +   F+  CR LL +D   +N+ Y    L A A+DG + I P AF  V  E  ++WH
Sbjct: 457 FHASISGFQQGCRPLLFLDSTPLNSKYQGFFLXATAVDGEDAIFPAAFAVVDAETEENWH 516

Query: 373 ------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVE 420
                        E +  + D  NG++ ++ E   K+ Y   CL+   E +         
Sbjct: 517 WFLLELKSAVKRSEQITFVADFQNGLNKSLGEIFDKS-YHSYCLRHLAEKLNNDLKGQFS 575

Query: 421 HF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWV 470
           H         F++A  +T    F +  + I   S + ++W++Q++   W  A F   ++ 
Sbjct: 576 HEARRFMINDFYAAALATKLEDFQRCAESIKGISPDAYNWIIQSEPEHWANAFFGGARY- 634

Query: 471 KCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVR 530
               +T +   +  + + +  E+ I      +     +    RR+E   W   K+TPT  
Sbjct: 635 --NHITSNFGQQFYSSISEAHELPITQMIDVLRGKMMETIYSRRVESDQWVT-KLTPTNE 691

Query: 531 EVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKG 590
           E ++      + F +   +G   ++   +  ++ ++++   C+C  WQ++G+PC HA   
Sbjct: 692 EKLQKEISIARSFQVSLSHGNIFEVRGES--VYSVDVDNWDCSCKAWQLTGLPCCHAIAV 749

Query: 591 IQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
           I+ I  +  +Y     +++++   Y   + P P
Sbjct: 750 IECIGRSPYDYCPRYFTVESYRLTYAESIHPIP 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441646|ref|XP_004138593.1| PREDICTED: uncharacterized protein LOC101203713 [Cucumis sativus]

 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/513 (22%), Positives = 213/513 (41%), Gaps = 68/513 (13%)

Query: 167 QRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 288 QRFNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKYQGCPWRIYASRLSTTQLICI 347

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYG------- 277
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG       
Sbjct: 348 KKMNTHHSCEGAAAKAGYRATRGWVGNIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 407

Query: 278 -------------------------FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 312
                                    F ++++  N  ++    TK     +   F R+FV 
Sbjct: 408 AWRAKEIAREQLQGSYKEAYNQLPYFCEKIKETNPGSVASFTTK-----DDSSFHRLFVS 462

Query: 313 WERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH 372
           +  +   F+  CR LL +D   +N+ Y      A A+DG + I P AF  V  E  ++WH
Sbjct: 463 FHASISGFQQGCRPLLFLDSTPLNSKYQGFFFTATAVDGEDAIFPAAFAVVDAETEENWH 522

Query: 373 ------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVE 420
                        E +  + D  NG++ ++ E   K+ Y   CL+   E +         
Sbjct: 523 WFLLELKSAVKRSEQITFVADFQNGLNKSLGEIFDKS-YHSYCLRHLAEKLNNDLKGQFS 581

Query: 421 HF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWV 470
           H         F++A  +T    F +  + I   S + ++W++Q++   W  A F   ++ 
Sbjct: 582 HEARRFMINDFYAAALATKLEDFQRCAESIKGISPDAYNWIIQSEPEHWANAFFGGARY- 640

Query: 471 KCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVR 530
               +T +   +  + + +  E+ I      +     +    RR+E   W   K+TPT  
Sbjct: 641 --NHITSNFGQQFYSSISEAHELPITQMIDVLRGKMMETIYSRRVESDQWVT-KLTPTNE 697

Query: 531 EVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKG 590
           E ++      + F +   +G   ++   +  ++ ++++   C+C  WQ++G+PC HA   
Sbjct: 698 EKLQKEISIARSFQVSLSHGNIFEVRGES--VYSVDVDNWDCSCKAWQLTGLPCCHAIAV 755

Query: 591 IQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
           I+ I  +  +Y     +++++   Y   + P P
Sbjct: 756 IECIGRSPYDYCPRYFTVESYRLTYAESIHPIP 788

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera]

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/513 (22%), Positives = 214/513 (41%), Gaps = 68/513 (13%)

Query: 167 QRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV 226
           QRF   + FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 202 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 261

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYG------- 277
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG       
Sbjct: 262 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 321

Query: 278 -------------------------FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 312
                                    F ++++  N  +    ETK     E   F R+F+ 
Sbjct: 322 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETK-----EDSSFHRLFIS 376

Query: 313 WERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH 372
           +      F+  CR LL +D   +N+ Y  ++L A A DG++G+ P+AF  V  E  D+W 
Sbjct: 377 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 436

Query: 373 ------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVE 420
                          +  + D   G+  ++ E      Y   CL+  TE + +       
Sbjct: 437 WFLLELKSAVSTARPITFVADFQKGLKKSLAEIFDNG-YHSYCLRYLTEKLNKDLKGQFS 495

Query: 421 HF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWV 470
           H         F++A  ++   +F +  + I   S E ++W++Q++   W  A F   ++ 
Sbjct: 496 HEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARY- 554

Query: 471 KCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVR 530
             + +  +      N++ +  ++ I      +     +L  +RR++   W   K+TP+  
Sbjct: 555 --SHMASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPSKE 611

Query: 531 EVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKG 590
           E +   T   +   ++  +G+  ++   +  I D++     C+C  WQ+SG+PC HA   
Sbjct: 612 EKLLKDTSTARSLQVLLSHGSTFEVRGESIDIVDIDH--WDCSCKDWQLSGLPCCHAIAV 669

Query: 591 IQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
            + I  N  +Y     +++++   Y   + P P
Sbjct: 670 FEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera]

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/513 (22%), Positives = 214/513 (41%), Gaps = 68/513 (13%)

Query: 167 QRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV 226
           QRF   + FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 184 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 243

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYG------- 277
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG       
Sbjct: 244 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 303

Query: 278 -------------------------FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 312
                                    F ++++  N  +    ETK     E   F R+F+ 
Sbjct: 304 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETK-----EDSSFHRLFIS 358

Query: 313 WERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH 372
           +      F+  CR LL +D   +N+ Y  ++L A A DG++G+ P+AF  V  E  D+W 
Sbjct: 359 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 418

Query: 373 ------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVE 420
                          +  + D   G+  ++ E      Y   CL+  TE + +       
Sbjct: 419 WFLLELKSAVSTARPITFVADFQKGLKKSLAEIFDNG-YHSYCLRYLTEKLNKDLKGQFS 477

Query: 421 HF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWV 470
           H         F++A  ++   +F +  + I   S E ++W++Q++   W  A F   ++ 
Sbjct: 478 HEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARY- 536

Query: 471 KCTCVTLSITDKLRNYLHQYLEMSIASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVR 530
             + +  +      N++ +  ++ I      +     +L  +RR++   W   K+TP+  
Sbjct: 537 --SHMASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPSKE 593

Query: 531 EVIKDRTIDGQRFVLVEENGTRLKLTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKG 590
           E +   T   +   ++  +G+  ++   +  I D++     C+C  WQ+SG+PC HA   
Sbjct: 594 EKLLKDTSTARSLQVLLSHGSTFEVRGESIDIVDIDH--WDCSCKDWQLSGLPCCHAIAV 651

Query: 591 IQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFP 623
            + I  N  +Y     +++++   Y   + P P
Sbjct: 652 FEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521263|ref|XP_003529276.1| PREDICTED: uncharacterized protein LOC100800865 [Glycine max]

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 212/514 (41%), Gaps = 60/514 (11%)

Query: 166 GQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L  +++       +C    C W+I+A ++ N  TF 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAPTFT 68

Query: 226 VTEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIRDEIKATYGFK---D 280
           +      H C R      H++   WI +    R +   N +  DI  +I   YG      
Sbjct: 69  IRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 281 EMERINSRNIVLL----------------ETKRHEYGEV---------ERFKRMFVCWER 315
           +  R   R +  +                + K+   G V          RF+R+FV +  
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFTTGADNRFQRLFVSFYA 188

Query: 316 TSYAFKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH--- 372
           +   F N C  ++ + G ++ + Y S +L A + D + G+ P+AF  V VE+ DSW    
Sbjct: 189 SITGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVENDDSWTWFL 248

Query: 373 -------------GEGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPV 419
                              + DG N I  AV    P + +  C   +   + K F  + +
Sbjct: 249 SELHKVLEVNTECMPEFIFLSDGLNSITDAVRRKFPSSSHAFCMRHLTESIGKEFKNSRL 308

Query: 420 EHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCTCVTLSI 479
            H  W A  ST+  +F + M  I   S E   WL Q   S WAL    K  +   ++ +I
Sbjct: 309 VHLLWKASYSTTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHF-KGTRFGHLSSNI 367

Query: 480 TDKLRNYLHQYLEMSIASRFVAIARLTAKL---FERRRIEVWNWYREKVTPTVREVIKDR 536
            ++   ++    E+ I      I R+ +KL   F+ RR++  +W    + P+  +++ + 
Sbjct: 368 -EEFNKWILDARELPIIQ---VIERIHSKLKTEFDDRRLKSSSWC-SVLAPSAEKLMTEA 422

Query: 537 TIDGQRFVLVEENGTRLKL--TDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLI 594
                   ++  N    ++   D + I+   N+ + SC+C  WQ++GIPC+HA   +   
Sbjct: 423 INRASTHQVLRSNEVEFEVLSADRSDIV---NIGSHSCSCRDWQLNGIPCSHAAAALISC 479

Query: 595 MGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAW 628
             +V  +     +  +F   Y   + P P K  W
Sbjct: 480 RKDVYAFSQKCFTAASFRDTYAETIHPIPGKLEW 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.345	0.309	0.244	6e-11
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.100	0.094	0.305	2.6e-09
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.349	0.342	0.193	4.1e-09

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
 Identities = 66/270 (24%), Positives = 113/270 (41%)

Query:   395 PKTVYRQCCLKIFTEMVKRFPTTPVE-HFFWSACRSTSATS-FNKYMDLIHNESEECHDW 452
             P   +R C   + +++    P      HF      S+S    F+ YM  I   + E   W
Sbjct:   466 PWAYHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKW 525

Query:   453 LLQTDWSSWALFTIPKWVKCTCVTLSITDKLRNYLHQYLEMSIASRFVAI-ARLT---AK 508
             L Q     WAL       +   + +  T+ L     ++ ++++A   + +  +L    A+
Sbjct:   526 LDQFPPHQWAL-AHDDGRRYGIMRID-TEALFAVCKRFRKVAMAGGVMLLFGQLKDAFAE 583

Query:   509 LFERRR--IEVWNWYREKVTPTVREVIKDR-----TI-----DGQRFVLVEENGTRL--K 554
              F+  R  ++  + Y E V   + E   D      TI     D  +  +  +  TRL  +
Sbjct:   584 SFKLSRGSLKHGDVYTEHVMEKLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRLMGQ 643

Query:   555 LTDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSM 614
               D+TS I  LN    +C CG +Q +  PC HA      +  N  +YVD+  +++ +   
Sbjct:   644 SNDSTSGIVQLN--DTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKT 701

Query:   615 YTPGMMPFPKKHAWK--WGACNKLLPPMIE 642
             Y+    P P+  AW   +G    L+PP+IE
Sbjct:   702 YSAKFSPVPELSAWPEAYGVPT-LIPPVIE 730

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 2.6e-09, Sum P(4) = 2.6e-09
 Identities = 22/72 (30%), Positives = 34/72 (47%)

Query:   571 SCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKHAW-K 629
             SC CG +Q    PC HA    + +  N  +YVD+  +++     Y       P+  AW +
Sbjct:   651 SCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPE 710

Query:   630 WGACNKLLPPMI 641
                  +LLPP+I
Sbjct:   711 ASGVPRLLPPVI 722

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 51/263 (19%), Positives = 103/263 (39%)

Query:   395 PKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLL 454
             P   ++ C   + ++ +  F    +E     A  +     F+ YM+ I  ++ E   WL 
Sbjct:   463 PWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLD 522

Query:   455 QTDWSSWALFTIPKWVKCTCVTL---SITDKLRNYLHQYLEMSIASRFVAIARLTAKLFE 511
             Q     WAL      ++   + +   ++    R +   Y  +++    + +       F+
Sbjct:   523 QIPRHKWAL-AHDSGLRYGIIEIDREALFAVCRGF--PYCTVAMTGGVMLMFDELRSSFD 579

Query:   512 RRRIEVWNWYREKV--TPTVREVIKDRTIDGQRFVLVEENGTRLKLTDTTSI---IFDLN 566
             +    +++     V  T    + +++   D   +V+ +      K+++++     I  LN
Sbjct:   580 KSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLN 639

Query:   567 MEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMYTPGMMPFPKKH 626
             +   +C C  +Q    PC HA    + +  N  +YVD   +++ +C  Y     P P   
Sbjct:   640 VS--TCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVA 697

Query:   627 AWKWGACN--KLLPPMIE-SVNT 646
             AW    C    L PP  + S NT
Sbjct:   698 AWPED-CRVPTLFPPSQQLSPNT 719

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	704
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	3e-05
pfam10551	88	pfam10551, MULE, MULE transposase domain	0.001
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	0.002

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 163 LYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGR 222
           L  GQ F+    F+KA+  +AI + F+  V ++       +C D  C W+++A ++ +  
Sbjct: 4   LEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSD 63

Query: 223 TFIV 226
           TF +
Sbjct: 64  TFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 340 NSVMLVAAALDGNNGILPIAFCEVHVEDLDSW------------HGEGLCIMGDGDNGID 387
            +    A  +D +    P+AF  V  E  +SW                L I+ DGD G+ 
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRPPLTIISDGDKGLK 64

Query: 388 YAVEEFLPKTVYRQC 402
            A++E  P   +R C
Sbjct: 65  KAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 570 QSCNCGLWQISGIPCAHA 587
           ++C+C  +Q+SGIPC HA
Sbjct: 1   KTCSCRKFQLSGIPCRHA 18

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	704
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.7
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.69
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.68
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.21
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.83
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.59
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.46
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.0
PF15288	40	zf-CCHC_6: Zinc knuckle	91.28
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	90.8
PF13610	140	DDE_Tnp_IS240: DDE domain	90.76
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	87.66
PF00098	18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	82.22
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	82.07
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	80.87

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=3.2e-70  Score=631.99  Aligned_cols=444  Identities=14%  Similarity=0.204  Sum_probs=365.1

Q ss_pred             CccccCCcEeCCHHHHHHHHHHHHHHcCceEEEEeecce-------EEEEEeec--------------------------
Q 044338          160 KMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAH-------VVSYECFD--------------------------  206 (704)
Q Consensus       160 n~~l~vG~~F~s~~e~k~ai~~yAi~~~f~~rv~kS~~~-------r~~~~C~~--------------------------  206 (704)
                      +..+.+||+|.|.++++.+|+.||...||.+|+.++.++       ..+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            467899999999999999999999999999998765432       24567764                          


Q ss_pred             --------cCCCceEEEEEEecCceEEEEEeccccccccccccccc-c-hhHHHHHHhhhcccCCCc-----------ch
Q 044338          207 --------LRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQH-R-SKWISAIYLHRWKLQPNL-----------RT  265 (704)
Q Consensus       207 --------~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~~~~~~~-~-~~~ia~~~~~~l~~~~~~-----------~~  265 (704)
                              .||+++|++.+ ...+.|.|+.++.+|||++....... + ++.+..... .+....++           ..
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~-~~~~~~~v~~~~~d~~~~~~~  228 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMAR-QFAEYKNVVGLKNDSKSSFDK  228 (846)
T ss_pred             cccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHh-hhhccccccccchhhcchhhH
Confidence                    36999999977 56789999999999999997543311 1 121111111 01110000           00


Q ss_pred             ---Hhh-HHHHHhhcchHHHHHHhcCCCeEEEEecccccccccceeEEEEeehhhHHHHHHhCccceeeeceeeccCCCc
Q 044338          266 ---VDI-RDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNS  341 (704)
Q Consensus       266 ---~~i-~~~i~~~~g~~~~l~~~NPgs~~~i~~~~~~~d~~~~f~~~F~a~~~~~~~f~~~~r~vi~iD~t~l~~~y~g  341 (704)
                         ..| ..+++....|..+++..||+|+|++++     |++++++++||+++.|+.+|.+ |+|||.||+||++|+|++
T Consensus       229 ~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~ql-----De~~~l~niFWaD~~sr~~Y~~-FGDvV~fDTTY~tN~y~~  302 (846)
T PLN03097        229 GRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDL-----GEDQRLKNLFWVDAKSRHDYGN-FSDVVSFDTTYVRNKYKM  302 (846)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhhCCCceEEEEE-----ccCCCeeeEEeccHHHHHHHHh-cCCEEEEeceeeccccCc
Confidence               011 135666678889999999999999999     9999999999999999999998 999999999999999999


Q ss_pred             eeeeeeeecCCCCeEEEEEEEeecCCccceee------------cCeEEEcCCCchHHHHHHhhcCCCcccccchhHHHH
Q 044338          342 VMLVAAALDGNNGILPIAFCEVHVEDLDSWHG------------EGLCIMGDGDNGIDYAVEEFLPKTVYRQCCLKIFTE  409 (704)
Q Consensus       342 ~ll~a~g~D~~~~~~pla~alv~~Et~esw~W------------~~~~iitD~~~~l~~Ai~~vfP~a~~h~~C~~Hi~~  409 (704)
                      ||++|+|+|||+|+++|||||+.+|+.++|.|            .|.+||||++.+|.+||++|||+| .||+|+|||++
T Consensus       303 Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t-~Hr~C~wHI~~  381 (846)
T PLN03097        303 PLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNA-HHCFFLWHILG  381 (846)
T ss_pred             EEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCc-eehhhHHHHHH
Confidence            99999999999999999999999999999999            899999999999999999999999 99999999999


Q ss_pred             -HHHhCC-----CchhHHHHhHhhcc-CCHHHHHHHHHHHHh-hChhHHHHHhcc--ccccceecccCCcccccccccch
Q 044338          410 -MVKRFP-----TTPVEHFFWSACRS-TSATSFNKYMDLIHN-ESEECHDWLLQT--DWSSWALFTIPKWVKCTCVTLSI  479 (704)
Q Consensus       410 -~~~~~~-----~~~~~~~~~~~~~a-~t~~eFe~~~~~l~~-~~~~~~~~L~~~--~~~~Wa~a~~~~~~~~~~~TtN~  479 (704)
                       +.++++     .+.|...|++|++. .++++|+..|..|.. ++++.++||+.+  .|++|+++|+++.|+.|+.||++
T Consensus       382 ~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqR  461 (846)
T PLN03097        382 KVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQR  461 (846)
T ss_pred             HHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccc
Confidence             998875     35899999999874 799999999999875 899999999997  89999999999999999999999


Q ss_pred             hHHHHHHHhhh--cccChHhHHHHHHHHHHHHHHHhHH-H---------------HHhhhccCCCHHHHHHHHHHHHhCC
Q 044338          480 TDKLRNYLHQY--LEMSIASRFVAIARLTAKLFERRRI-E---------------VWNWYREKVTPTVREVIKDRTIDGQ  541 (704)
Q Consensus       480 ~ES~N~~lk~~--r~~pi~~lle~i~~~~~~~~~~r~~-~---------------a~~~~~~~~Tp~~~k~lq~~~~~a~  541 (704)
                      +||+|++|++.  +..+|..|++.+...+..+..+-.+ .               ..++++.+|||.||++||+++..+.
T Consensus       462 SES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~  541 (846)
T PLN03097        462 SESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAV  541 (846)
T ss_pred             cccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            99999999984  6688999998886655443322111 0               1122249999999999999999998


Q ss_pred             ceEEEee----CCeEEEEEecCc-eEEEeec----cceeeeecccccccccccchhhhhhhccc--cccccccccccHHH
Q 044338          542 RFVLVEE----NGTRLKLTDTTS-IIFDLNM----EAQSCNCGLWQISGIPCAHACKGIQLIMG--NVEEYVDNMMSIQN  610 (704)
Q Consensus       542 ~~~V~~~----~~~~yeV~~~~~-~~~~V~L----~~~tCSC~~fe~~GiPC~Halav~~~~~~--~p~~yv~~~yt~~~  610 (704)
                      .|.+...    ....|.|...++ ..|.|..    ...+|+|++|+..||||+|||.||.+.++  .|..||.++||+++
T Consensus       542 ~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdA  621 (846)
T PLN03097        542 ACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDA  621 (846)
T ss_pred             heEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhh
Confidence            8877643    235788887543 3344533    46899999999999999999999999998  69999999999887


Q ss_pred             Hh
Q 044338          611 FC  612 (704)
Q Consensus       611 ~~  612 (704)
                      -.
T Consensus       622 K~  623 (846)
T PLN03097        622 KS  623 (846)
T ss_pred             hh
Confidence            53

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.70  E-value=1.8e-17  Score=145.01  Aligned_cols=77  Identities=30%  Similarity=0.436  Sum_probs=73.8

Q ss_pred             ceeeccCCCceeee---eeeecCCCCeEEEEEEEeecCCccceee-----------cCeEEEcCCCchHHHHHHhhcCCC
Q 044338          332 GWKINNPYNSVMLV---AAALDGNNGILPIAFCEVHVEDLDSWHG-----------EGLCIMGDGDNGIDYAVEEFLPKT  397 (704)
Q Consensus       332 ~t~l~~~y~g~ll~---a~g~D~~~~~~pla~alv~~Et~esw~W-----------~~~~iitD~~~~l~~Ai~~vfP~a  397 (704)
                      |||++|+| |+++.   ++|+|++++.+|+||+|+.+|+.++|.|           .|.+||||+++|+.+||+++||++
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~p~~ii~D~~~~~~~Ai~~vfP~~   79 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQKPKVIISDFDKALINAIKEVFPDA   79 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccCceeeeccccHHHHHHHHHHCCCc
Confidence            79999999 98885   9999999999999999999999999999           478999999999999999999999


Q ss_pred             cccccchhHHHH-H
Q 044338          398 VYRQCCLKIFTE-M  410 (704)
Q Consensus       398 ~~h~~C~~Hi~~-~  410 (704)
                       .|++|.||+.+ +
T Consensus        80 -~~~~C~~H~~~n~   92 (93)
T PF10551_consen   80 -RHQLCLFHILRNI   92 (93)
T ss_pred             -eEehhHHHHHHhh
Confidence             99999999998 5

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.69  E-value=1.5e-17  Score=182.28  Aligned_cols=208  Identities=16%  Similarity=0.242  Sum_probs=166.9

Q ss_pred             CCCcchHhhHHHHHhhcc-hHHHHHHhcCCCeEEEEecccccccccceeEEEEeehhhHHHHHH----hC-ccceeeece
Q 044338          260 QPNLRTVDIRDEIKATYG-FKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKN----QC-RRLLAVDGW  333 (704)
Q Consensus       260 ~~~~~~~~i~~~i~~~~g-~~~~l~~~NPgs~~~i~~~~~~~d~~~~f~~~F~a~~~~~~~f~~----~~-r~vi~iD~t  333 (704)
                      -.+++.++|.+.++..|| ..     ..|                ..+.++.=.+...+..|+.    .. -++|.+||+
T Consensus       112 ~~G~Str~i~~~l~~l~g~~~-----~S~----------------s~vSri~~~~~~~~~~w~~R~L~~~~y~~l~iD~~  170 (381)
T PF00872_consen  112 LKGVSTRDIEEALEELYGEVA-----VSK----------------STVSRITKQLDEEVEAWRNRPLESEPYPYLWIDGT  170 (381)
T ss_pred             ccccccccccchhhhhhcccc-----cCc----------------hhhhhhhhhhhhhHHHHhhhccccccccceeeeee
Confidence            357888999999998888 32     111                2222322233344455542    24 478999999


Q ss_pred             eeccCCC-----ceeeeeeeecCCCCeEEEEEEEeecCCccceee-----------cCeEEEcCCCchHHHHHHhhcCCC
Q 044338          334 KINNPYN-----SVMLVAAALDGNNGILPIAFCEVHVEDLDSWHG-----------EGLCIMGDGDNGIDYAVEEFLPKT  397 (704)
Q Consensus       334 ~l~~~y~-----g~ll~a~g~D~~~~~~pla~alv~~Et~esw~W-----------~~~~iitD~~~~l~~Ai~~vfP~a  397 (704)
                      |++.+.+     ..+++++|+|.+|+..+||+.+.+.|+.++|.=           .+..||+|+++||..||.++||.|
T Consensus       171 ~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl~~~~lvv~Dg~~gl~~ai~~~fp~a  250 (381)
T PF00872_consen  171 YFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGLKDILLVVSDGHKGLKEAIREVFPGA  250 (381)
T ss_pred             ecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccccccceeeccccccccccccccccch
Confidence            9997744     468999999999999999999999999999986           678999999999999999999999


Q ss_pred             cccccchhHHHH-HHHhCCCc---hhHHHHhHhhccCCHHHHHHHHHHHHh----hChhHHHHHhccccccceecccCCc
Q 044338          398 VYRQCCLKIFTE-MVKRFPTT---PVEHFFWSACRSTSATSFNKYMDLIHN----ESEECHDWLLQTDWSSWALFTIPKW  469 (704)
Q Consensus       398 ~~h~~C~~Hi~~-~~~~~~~~---~~~~~~~~~~~a~t~~eFe~~~~~l~~----~~~~~~~~L~~~~~~~Wa~a~~~~~  469 (704)
                       .++.|.+|+++ +.++++.+   .+...++.+..+.+.+++...++.+..    ..|.+.++|.+...+.|+..-|+..
T Consensus       251 -~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~  329 (381)
T PF00872_consen  251 -KWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWDELLTFLDFPPE  329 (381)
T ss_pred             -hhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhccccccceeeecch
Confidence             99999999999 98888643   677788888778887777777777654    5789999999988888888778866


Q ss_pred             ccccccccchhHHHHHHHhh
Q 044338          470 VKCTCVTLSITDKLRNYLHQ  489 (704)
Q Consensus       470 ~~~~~~TtN~~ES~N~~lk~  489 (704)
                      .+--+.|||.+|++|+.||.
T Consensus       330 ~~~~i~TTN~iEsln~~irr  349 (381)
T PF00872_consen  330 HRRSIRTTNAIESLNKEIRR  349 (381)
T ss_pred             hccccchhhhccccccchhh
Confidence            56677899999999999997

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.68  E-value=9.8e-17  Score=131.56  Aligned_cols=67  Identities=27%  Similarity=0.524  Sum_probs=65.1

Q ss_pred             CccccCCcEeCCHHHHHHHHHHHHHHcCceEEEEeecceEEEEEeeccCCCceEEEEEEecCceEEE
Q 044338          160 KMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDLRCDWKIKAERVVNGRTFIV  226 (704)
Q Consensus       160 n~~l~vG~~F~s~~e~k~ai~~yAi~~~f~~rv~kS~~~r~~~~C~~~gCpwrv~as~~~~s~~w~I  226 (704)
                      ||.|++||+|+|+++|+.||..||++.+|++++.+|+++|++++|...+|||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            5789999999999999999999999999999999999999999999999999999999999999987

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.21  E-value=2.6e-11  Score=130.88  Aligned_cols=164  Identities=13%  Similarity=0.153  Sum_probs=130.6

Q ss_pred             CccceeeeceeeccC--CCceeeeeeeecCCCCeEEEEEEEeecCCcccee-e----------cCeEEEcCCCchHHHHH
Q 044338          324 CRRLLAVDGWKINNP--YNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWH-G----------EGLCIMGDGDNGIDYAV  390 (704)
Q Consensus       324 ~r~vi~iD~t~l~~~--y~g~ll~a~g~D~~~~~~pla~alv~~Et~esw~-W----------~~~~iitD~~~~l~~Ai  390 (704)
                      ..++|.+||+|++-+  -+..+++|+|++.+|+-.+||+.+.+.|+ ..|. |          ....+++|+++||.+||
T Consensus       144 ~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl~~v~l~v~Dg~~gl~~aI  222 (379)
T COG3328         144 DYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGLSDVLLVVVDGLKGLPEAI  222 (379)
T ss_pred             CceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccccceeEEecchhhhhHHHH
Confidence            667899999999998  45789999999999999999999999999 8888 5          45677889999999999


Q ss_pred             HhhcCCCcccccchhHHHH-HHHhCCCc---hhHHHHhHhhccCCHHH----HHHHHHHHHhhChhHHHHHhccccccce
Q 044338          391 EEFLPKTVYRQCCLKIFTE-MVKRFPTT---PVEHFFWSACRSTSATS----FNKYMDLIHNESEECHDWLLQTDWSSWA  462 (704)
Q Consensus       391 ~~vfP~a~~h~~C~~Hi~~-~~~~~~~~---~~~~~~~~~~~a~t~~e----Fe~~~~~l~~~~~~~~~~L~~~~~~~Wa  462 (704)
                      ..+||.+ .++.|..|+.+ +..+...+   .....+..+..+.+.++    |+...+.+....|....|+.+..-+.|.
T Consensus       223 ~~v~p~a-~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~~~~~~  301 (379)
T COG3328         223 SAVFPQA-AVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNALEELLP  301 (379)
T ss_pred             HHhccHh-hhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhcc
Confidence            9999999 99999999999 88776544   33344444444444444    4444444445678888888887777777


Q ss_pred             ecccCCcccccccccchhHHHHHHHhh
Q 044338          463 LFTIPKWVKCTCVTLSITDKLRNYLHQ  489 (704)
Q Consensus       463 ~a~~~~~~~~~~~TtN~~ES~N~~lk~  489 (704)
                      ..-|+...+--+.|||..|++|+.++.
T Consensus       302 F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         302 FFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             cccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            766665535567899999999998875

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.83  E-value=8.2e-10  Score=73.78  Aligned_cols=27  Identities=41%  Similarity=0.774  Sum_probs=25.2

Q ss_pred             eeeeecccccccccccchhhhhhhccc
Q 044338          570 QSCNCGLWQISGIPCAHACKGIQLIMG  596 (704)
Q Consensus       570 ~tCSC~~fe~~GiPC~Halav~~~~~~  596 (704)
                      .+|||++||..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.59  E-value=2.6e-07  Score=81.17  Aligned_cols=69  Identities=12%  Similarity=0.322  Sum_probs=65.2

Q ss_pred             eCCHHHHHHHHHHHHHHcCceEEEEeecceEEEEEeec------------------------------------------
Q 044338          169 FRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFD------------------------------------------  206 (704)
Q Consensus       169 F~s~~e~k~ai~~yAi~~~f~~rv~kS~~~r~~~~C~~------------------------------------------  206 (704)
                      |.+++|++.+|+.++...||+|.+.+||.+.+.++|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            78999999999999999999999999999999999973                                          


Q ss_pred             cCCCceEEEEEEecCceEEEEEecccccccc
Q 044338          207 LRCDWKIKAERVVNGRTFIVTEFVAQHKCTR  237 (704)
Q Consensus       207 ~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~  237 (704)
                      ..|||+|+|........|.|..+++.|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            2699999999999999999999999999975

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.46  E-value=3.1e-07  Score=79.92  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=54.0

Q ss_pred             HHHHHHHHHcCceEEEEeecce-------EEEEEeec----------------------cCCCceEEEEEEecCceEEEE
Q 044338          177 KAIEVFAICDGFKLCVMENRAH-------VVSYECFD----------------------LRCDWKIKAERVVNGRTFIVT  227 (704)
Q Consensus       177 ~ai~~yAi~~~f~~rv~kS~~~-------r~~~~C~~----------------------~gCpwrv~as~~~~s~~w~I~  227 (704)
                      ++|+.||...||.++..+|.+.       ++.++|..                      .||||+|.+.+.. .+.|.|+
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            3789999999999999887654       78899985                      4899999999877 9999999


Q ss_pred             Eeccccccccc
Q 044338          228 EFVAQHKCTRR  238 (704)
Q Consensus       228 ~~~~~H~C~~~  238 (704)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999974

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.00  E-value=3.5e-06  Score=61.51  Aligned_cols=31  Identities=29%  Similarity=0.677  Sum_probs=27.0

Q ss_pred             eeccceeeeecccccccccccchhhhhhhcc
Q 044338          565 LNMEAQSCNCGLWQISGIPCAHACKGIQLIM  595 (704)
Q Consensus       565 V~L~~~tCSC~~fe~~GiPC~Halav~~~~~  595 (704)
                      +++...+|||..|+..|.||+|++||+...+
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            4556889999999999999999999997653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF15288 zf-CCHC_6: Zinc knuckle

Probab=91.28  E-value=0.17  Score=36.48  Aligned_cols=21  Identities=10%  Similarity=-0.042  Sum_probs=16.2

Q ss_pred             cccCcccccCCCC--CCCCCCCC
Q 044338          660 ARQCIENNSDAAI--NNPQWTHP  680 (704)
Q Consensus       660 ~~~Cs~C~~~gHn--~~~~~~~~  680 (704)
                      +++|++|++.||.  +..||...
T Consensus         1 k~kC~~CG~~GH~~t~k~CP~~~   23 (40)
T PF15288_consen    1 KVKCKNCGAFGHMRTNKRCPMYC   23 (40)
T ss_pred             CccccccccccccccCccCCCCC
Confidence            4699999999998  45566643

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=90.80  E-value=0.39  Score=38.30  Aligned_cols=40  Identities=15%  Similarity=0.350  Sum_probs=32.8

Q ss_pred             ceEEEEEeeccCCCceEEEEEEecCceEEEEEeccccccc
Q 044338          197 AHVVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCT  236 (704)
Q Consensus       197 ~~r~~~~C~~~gCpwrv~as~~~~s~~w~I~~~~~~H~C~  236 (704)
                      -.|.-+.|+..+||++-.+.+..++....|+++.++|||+
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            3567799999999999999988778889999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=90.76  E-value=0.27  Score=46.25  Aligned_cols=70  Identities=19%  Similarity=0.095  Sum_probs=52.4

Q ss_pred             ccceeeeceeeccCCCceeeeeeeecCCCCeEEEEEEEeecCCccceee-----------cCeEEEcCCCchHHHHHHhh
Q 044338          325 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHG-----------EGLCIMGDGDNGIDYAVEEF  393 (704)
Q Consensus       325 r~vi~iD~t~l~~~y~g~ll~a~g~D~~~~~~pla~alv~~Et~esw~W-----------~~~~iitD~~~~l~~Ai~~v  393 (704)
                      ++.+.+|-||.+.+-+ ..+...++|.+++  +|++-|-..-+...=..           .|..|+||+.++...|+.++
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~~~p~~ivtDk~~aY~~A~~~l   77 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHRGEPRVIVTDKLPAYPAAIKEL   77 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeeccccceeecccCCccchhhhhc
Confidence            3578899999876533 3444677888888  67777766665544333           78899999999999999999


Q ss_pred             cCCC
Q 044338          394 LPKT  397 (704)
Q Consensus       394 fP~a  397 (704)
                      +|..
T Consensus        78 ~~~~   81 (140)
T PF13610_consen   78 NPEG   81 (140)
T ss_pred             cccc
Confidence            8864

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=87.66  E-value=0.82  Score=50.27  Aligned_cols=56  Identities=11%  Similarity=0.275  Sum_probs=49.6

Q ss_pred             cCCcEeCCHHHHHHHHHHHHHHcCceEEEEeec-ceEEEEEeeccCCCceEEEEEEe
Q 044338          164 YHGQRFRDVSHFRKAIEVFAICDGFKLCVMENR-AHVVSYECFDLRCDWKIKAERVV  219 (704)
Q Consensus       164 ~vG~~F~s~~e~k~ai~~yAi~~~f~~rv~kS~-~~r~~~~C~~~gCpwrv~as~~~  219 (704)
                      .-+..|++.++-+.+|+.|-++.+..|..+.|- .+.|+|.|.-..|||+|.++..+
T Consensus        23 ~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   23 AQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             ccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            357789999999999999999999999888875 46799999999999999998644

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.22  E-value=1.1  Score=26.67  Aligned_cols=17  Identities=18%  Similarity=0.263  Sum_probs=14.3

Q ss_pred             ccCcccccCCCCCCCCC
Q 044338          661 RQCIENNSDAAINNPQW  677 (704)
Q Consensus       661 ~~Cs~C~~~gHn~~~~~  677 (704)
                      ++|-+|++.||...-++
T Consensus         1 ~~C~~C~~~GH~~~~Cp   17 (18)
T PF00098_consen    1 RKCFNCGEPGHIARDCP   17 (18)
T ss_dssp             SBCTTTSCSSSCGCTSS
T ss_pred             CcCcCCCCcCcccccCc
Confidence            47999999999977665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.07  E-value=2.6  Score=33.00  Aligned_cols=46  Identities=13%  Similarity=0.262  Sum_probs=25.2

Q ss_pred             cCceEEEEeecceEEEEEeecc---CCCceEEEEEEecCceEEEEEecccccc
Q 044338          186 DGFKLCVMENRAHVVSYECFDL---RCDWKIKAERVVNGRTFIVTEFVAQHKC  235 (704)
Q Consensus       186 ~~f~~rv~kS~~~r~~~~C~~~---gCpwrv~as~~~~s~~w~I~~~~~~H~C  235 (704)
                      .|+.|...+.........|...   +|+++|...    .+...|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~----~~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD----AGDGRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE----CCCCEEEECCCccCC
Confidence            3777888777788889999864   899999876    333455556688987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>smart00774 WRKY DNA binding domain

Probab=80.87  E-value=2.2  Score=33.81  Aligned_cols=38  Identities=16%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             eEEEEEeec-cCCCceEEEEEEecCceEEEEEecccccc
Q 044338          198 HVVSYECFD-LRCDWKIKAERVVNGRTFIVTEFVAQHKC  235 (704)
Q Consensus       198 ~r~~~~C~~-~gCpwrv~as~~~~s~~w~I~~~~~~H~C  235 (704)
                      -|.-+.|+. .+||++=.+.+..+++...++++.++|||
T Consensus        21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            456689998 89999888877666777888899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	704
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 8e-09
 Identities = 89/657 (13%), Positives = 161/657 (24%), Gaps = 252/657 (38%)

Query: 3   EDKQSGVVDR-KRQTRQKNGG----STKQTINKTSPEYIRTRSCGSRLRGNSANDTD--- 54
             KQ  +V +   +  + N        K    + S           RL  ++        
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 55  -RPEQLLKTKCRRMRRKIARELFPSNN---HSNEQCNRHSRTGM-GC-KT---------- 98
            R +  LK       R+   EL P+ N               G+ G  KT          
Sbjct: 132 SRLQPYLK------LRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSY 174

Query: 99  ----QMPT---W----RCSDDDDESQEENNDKEDQIEGYSSENDKGCMYRLTDEETPCHV 147
               +M     W     C+  +   +            ++S +D     +L        +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 148 GEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAICDGFKLCVMENRAHVVSYECFDL 207
               K +      ++L       +V +  KA   F                       +L
Sbjct: 235 RRLLKSKPYENCLLVL------LNVQN-AKAWNAF-----------------------NL 264

Query: 208 RCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHR--------SKWISAIYLHRWKL 259
            C  KI    ++  R   VT+F++    T  H    H          K +   YL     
Sbjct: 265 SC--KI----LLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL----- 311

Query: 260 QPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYA 319
             + R  D+  E+             N R + ++          E  +     W+   + 
Sbjct: 312 --DCRPQDLPREVL----------TTNPRRLSII---------AESIRDGLATWDNWKH- 349

Query: 320 FKNQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWHGEGLCIM 379
                     V+  K+                   I+     E  +  L+          
Sbjct: 350 ----------VNCDKLTT-----------------II-----ESSLNVLEP--------- 368

Query: 380 GDGDNGIDYAVEEFLPKTVYRQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFNKYM 439
                       E+  + ++ +  L +F       PT  +    W     +        +
Sbjct: 369 -----------AEY--RKMFDR--LSVFPPSAH-IPTILLS-LIWFDVIKSDVMVV---V 408

Query: 440 DLIHNESEECHDWLLQTDWSSWALFTIP------------------------KWVKCTCV 475
           + +H  S      L++      +  +IP                           K    
Sbjct: 409 NKLHKYS------LVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 476 TLSITDKLRNYLHQYL-----EMSIASRFVAIAR-------LTAKLFERRRIEVWNW--- 520
              I   L  Y + ++      +    R             L  K+  R     WN    
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGS 519

Query: 521 ----------YREKVT---PTVREVIKDRTIDGQRFVL-VEENGTRLKLTDTTSIIF 563
                     Y+  +    P    ++         F+  +EEN    K TD   I  
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 66/453 (14%), Positives = 131/453 (28%), Gaps = 143/453 (31%)

Query: 241 QFQHRSKWISAIYLHRWK-------LQPNLRTVDIRDEIKATYGFKDEMERINSRNIVLL 293
           + Q++ K I +++   +        +Q   +++  ++EI      KD +     R    L
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-RLFWTL 71

Query: 294 ETKRHEYGEVERFKRMFVCWERTSYAF-----KNQCR-RLLAVDGW--KINNPYNSVMLV 345
            +K+ E   V++F        R +Y F     K + R   +    +  + +  YN   + 
Sbjct: 72  LSKQEE--MVQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 346 AAALDGNNGILPIAFCEVHVEDLDSW-----HGEGLCIMGDGDNG---------IDYAVE 391
           A     N   +           L          + + I G   +G         + Y V+
Sbjct: 127 A---KYN---VSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 392 EFLPKTVY-----RQCCLKIFTEMVKRFPTTPVEHFFWSACRSTSATSFN------KYMD 440
             +   ++          +   EM+++     ++  + S    +S           +   
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 441 LIHNES-EECHDWLLQTD--WSSWAL--FTIPKWVKCTCVTLSITDKLRNYLHQYLEMSI 495
           L+ ++  E C   LL      ++ A   F +      +C  L  T               
Sbjct: 237 LLKSKPYENC---LLVLLNVQNAKAWNAFNL------SCKILLTT--------------- 272

Query: 496 ASRFVAIARLTAKLFERRRIEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGTRLKL 555
             RF  +                    + ++          ++D     L  +    L L
Sbjct: 273 --RFKQVT-------------------DFLSAATT---THISLDHHSMTLTPDEVKSLLL 308

Query: 556 TDTTSIIFDLNMEAQSCNCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSIQNFCSMY 615
                   DL  E  + N         P       + +I    E   D + +  N     
Sbjct: 309 KYLDCRPQDLPREVLTTN---------PRR-----LSII---AESIRDGLATWDN----- 346

Query: 616 TPGMMPFPKKHAWKWGACNKLLPPMIESVNTLS 648
                       WK   C+KL   +  S+N L 
Sbjct: 347 ------------WKHVNCDKLTTIIESSLNVLE 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	704
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	89.47
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	89.02

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=89.47  E-value=0.55  Score=38.04  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             EEEEEeeccCCCceEEEEEEecCceEEEEEeccccccccc
Q 044338          199 VVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR  238 (704)
Q Consensus       199 r~~~~C~~~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~  238 (704)
                      |--++|+..|||++-.+.+..++....++++.++|||+..
T Consensus        35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            5568999999999999988777778889999999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=89.02  E-value=0.6  Score=37.97  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=34.6

Q ss_pred             EEEEEeeccCCCceEEEEEEecCceEEEEEeccccccccc
Q 044338          199 VVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR  238 (704)
Q Consensus       199 r~~~~C~~~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~  238 (704)
                      |--++|+..||+++-.+.+...+....++++.++|||+..
T Consensus        38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            5568999999999999998777777888899999999863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	704
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	92.34

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.34  E-value=0.096  Score=39.87  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=35.1

Q ss_pred             EEEEEeeccCCCceEEEEEEecCceEEEEEeccccccccc
Q 044338          199 VVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR  238 (704)
Q Consensus       199 r~~~~C~~~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~  238 (704)
                      |.-+.|+..+|+++=.+.+..+++...++++.++|||+..
T Consensus        31 RsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          31 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            6668899999999999988877788889999999999763