Citrus Sinensis ID: 044340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSSSSHNLPANSMDHMVDHHHQANIGGSLWSC
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHcccccEcccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkesgrkqgalspcAACKLLRRRCAqdcvfapyfpadepqkfasvHKVFGASNVNKMLQElpehqrsdaVSSMVYEanarvrdpvygCVGAISSLQQQIDSLQAQLALAQAEVVHMRmrqvspssssshnlpansmdhmvdhhhqaniggslwsc
Flexible Loop (DISEMBL)
mkesgrkqgalspCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSSSSHNLPANSMDHMVDHHHQANIGGSLWSC
Low Complexity Region (SEG)
MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGaisslqqqidslqaqlalaqaEVVHMRMRQVspsssssHNLPANSMDHMVDHHHQANIGGSLWSC
Disordered region (IsUnstruct)
************PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNV******************MVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV*****************************************
Disordered Region (DISOPRED)
****************CKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV*************************************LWSC
Disordered Region (DISEMBL)
***********SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMR************NLPANSMDHMVDHHHQANIGGSLWSC
Disordered Region (DISPRO)
***********SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQV**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVSPSSSSSHNLPANSMDHMVDHHHQANIGGSLWSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q9SHE9	172	LOB domain-containing pro	yes	no	0.948	0.854	0.677	1e-54
Q9SA51	165	LOB domain-containing pro	no	no	0.987	0.927	0.574	4e-48
Q8LBW3	193	LOB domain-containing pro	no	no	0.812	0.652	0.692	4e-46
Q9LQR0	190	LOB domain-containing pro	no	no	0.709	0.578	0.681	1e-40
Q9SK08	232	LOB domain-containing pro	no	no	0.722	0.482	0.669	2e-40
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.774	0.645	0.595	9e-39
Q9AT61	268	LOB domain-containing pro	no	no	0.819	0.473	0.551	2e-38
Q8L8Q3	159	LOB domain-containing pro	no	no	0.664	0.647	0.640	2e-36
O64836	311	LOB domain-containing pro	no	no	0.677	0.337	0.628	3e-36
Q8L5T5	224	LOB domain-containing pro	no	no	0.716	0.495	0.657	7e-36

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 133/180 (73%), Gaps = 33/180 (18%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKES RKQGA SPCAACKLLRRRCAQDCVF+PYFPADEPQKFA+VH+VFGASNVNKMLQE
Sbjct: 1   MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQAQLALAQAEVVH+R+RQ
Sbjct: 61  LPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Query: 121 VSPSSSSSHNLPANSM-------------------------DHMVDHHHQANIGGSLWSC 155
                  S N P + +                          HM D   +A++G S+WSC
Sbjct: 121 -------STNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHM-DIVDEASLGESMWSC 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 120/167 (71%), Gaps = 14/167 (8%)

Query: 1   MKESGRKQG-ALSPCAACKLLRRRCAQD-CVFAPYFPADEPQKFASVHKVFGASNVNKML 58
           M++ G + G  +SPCA CKLLRR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 59  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRM 118
           QEL E+ RSDAV SMVYEANAR++DPVYGCVG ISSL +Q+++LQ QLA AQAE++H+R 
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query: 119 -----RQVSPSSSSSHNLPAN-----SMDHMVDHHHQANIGGSLWSC 155
                 +  P ++S+   P+N      +D  V +   A  G  LWSC
Sbjct: 121 LHRIHTKPPPYTASTVTFPSNKDFYSDIDMAVAYTDDA--GDFLWSC 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  183 bits (464), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 105/127 (82%), Gaps = 1/127 (0%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
           SPCA+CKLLRRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQELP HQR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSSSSHNL 131
           S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M Q  P+  S H +
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM-QNEPTLQSHHQV 125

Query: 132 PANSMDH 138
                DH
Sbjct: 126 LELDQDH 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  165 bits (418), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 90/110 (81%)

Query: 11  LSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQAQLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 89/112 (79%)

Query: 11  LSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
           LSPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 53  LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVS 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQAQLA  Q E+V M++++ S
Sbjct: 113 NSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSS 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  159 bits (401), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 92/126 (73%), Gaps = 6/126 (4%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
           SPCAACK LRR+C   C+FAPYFP +EP KFA+VHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSSSSHNL 131
           S+ YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H  +      S+S+   
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGL------STSAAGA 123

Query: 132 PANSMD 137
           P N +D
Sbjct: 124 PGNVVD 129

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 95/127 (74%)

Query: 5   GRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEH 64
           G     ++PCAACKLLRRRCA++C F+PYF   EP KFA+VHKVFGASNV+KML E+ E 
Sbjct: 44  GTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGES 103

Query: 65  QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPS 124
           QR DA +S+VYEAN R+RDP+YGC+GAIS+LQ  I SLQ++L   + E++  + ++ +  
Sbjct: 104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Query: 125 SSSSHNL 131
           +S  +N 
Sbjct: 164 TSLQNNF 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 84/103 (81%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
           SPCAACK LRR+C  DCVFAPYFP +EP KFA+VH++FGASNV+K+L E+  HQR DAV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114
           S+ YEA AR++DPVYGCVGAIS LQ+Q+  LQ +L    A+++
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 80/105 (76%)

Query: 10  ALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDA 69
           A +PCAACKLLRR+C Q+CVFAPYFP   PQKF  VH+VFGASNV K+L +LP  QR D 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 70  VSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114
           V+S+ YEA AR+RDP+YGCVG IS LQQ +  +Q  L  A+ E+V
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELV 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L5T5|LBD15_ARATH LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2

 Score =  149 bits (376), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 94/111 (84%)

Query: 10  ALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDA 69
            ++PCAACKLLRRRCAQ+C F+PYF   EP KFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 70  VSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+ +LQA+L   ++E++  + R+
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
255544668	147	LOB domain-containing protein, putative	0.948	1.0	0.864	3e-69
224083986	146	predicted protein [Populus trichocarpa]	0.941	1.0	0.819	5e-66
224096640	146	predicted protein [Populus trichocarpa]	0.941	1.0	0.825	6e-66
356525770	177	PREDICTED: LOB domain-containing protein	0.974	0.853	0.743	8e-66
359494441	170	PREDICTED: LOB domain-containing protein	0.974	0.888	0.75	2e-64
359807226	178	uncharacterized protein LOC100790989 [Gl	0.974	0.848	0.716	3e-63
225465115	175	PREDICTED: LOB domain-containing protein	0.967	0.857	0.714	1e-61
224053699	170	predicted protein [Populus trichocarpa]	0.961	0.876	0.710	3e-61
351722989	159	uncharacterized protein LOC100306560 [Gl	0.967	0.943	0.753	6e-61
449464650	173	PREDICTED: LOB domain-containing protein	0.967	0.867	0.748	2e-60

>gi|255544668|ref|XP_002513395.1| LOB domain-containing protein, putative [Ricinus communis] gi|223547303|gb|EEF48798.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 139/155 (89%), Gaps = 8/155 (5%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQ QLA+AQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAEVVHMRMRQ 120

Query: 121 VSPSSSSSHNLPANSMDHMVDHHHQANIGGSLWSC 155
              SSS+      ++MD +VD   QAN G SLWSC
Sbjct: 121 FGTSSSNP-----SAMDMVVD---QANAGESLWSC 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083986|ref|XP_002307194.1| predicted protein [Populus trichocarpa] gi|222856643|gb|EEE94190.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 136/155 (87%), Gaps = 9/155 (5%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKESGRK GALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKHGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQI+SLQ QLA+AQAEVVHMRMR+
Sbjct: 61  LPEHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQINSLQTQLAVAQAEVVHMRMRE 120

Query: 121 VSPSSSSSHNLPANSMDHMVDHHHQANIGGSLWSC 155
            + SS++       +MD  V+   Q N+G SLWSC
Sbjct: 121 FTSSSNT------GAMDMAVN---QDNMGESLWSC 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096640|ref|XP_002310683.1| predicted protein [Populus trichocarpa] gi|222853586|gb|EEE91133.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 135/155 (87%), Gaps = 9/155 (5%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKESGRK GALSPCAACKLLRRRCAQDC+FAPYFPADEPQKFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKLGALSPCAACKLLRRRCAQDCMFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQ+QIDSLQ QLA+AQAEVVHMR+RQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQKQIDSLQTQLAIAQAEVVHMRVRQ 120

Query: 121 VSPSSSSSHNLPANSMDHMVDHHHQANIGGSLWSC 155
            + SS+         MD  VD   QA +G SLWSC
Sbjct: 121 FTSSSNP------GVMDMAVD---QATMGESLWSC 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525770|ref|XP_003531496.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 140/179 (78%), Gaps = 28/179 (15%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKESGRKQG +SPCAACKLLRRRC +DCVFAPYFPADEPQKF SVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQ+D LQ QLALAQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQ 120

Query: 121 VSP-------------SSSSSHNLPANS------------MDHMVDHHHQANIGGSLWS 154
            SP             S+SSS NL  +S            MD +VD   QAN+G SLWS
Sbjct: 121 FSPPSEQQQPSVLPEASNSSSENLYHSSRLLSSQTKSLFGMDMVVD---QANMGQSLWS 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494441|ref|XP_002264049.2| PREDICTED: LOB domain-containing protein 4-like [Vitis vinifera] gi|147845397|emb|CAN83356.1| hypothetical protein VITISV_026098 [Vitis vinifera] gi|296082729|emb|CBI21734.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/172 (75%), Positives = 138/172 (80%), Gaps = 21/172 (12%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKESGRKQGA+SPCAACKLLRRRCAQDCVFAPYFPADEP KFASVHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLAL QAEVV MRM Q
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQ 120

Query: 121 VSPSSSS-SHNLPAN-----------------SMDHMVDHHHQANIGGSLWS 154
            + S+S+ + + P N                 SMD +VDH   AN+  SLWS
Sbjct: 121 FTSSTSNQATDSPENASHTSRLAASPQTKSFFSMDMVVDH---ANMVESLWS 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807226|ref|NP_001241363.1| uncharacterized protein LOC100790989 [Glycine max] gi|255645217|gb|ACU23106.1| unknown [Glycine max]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 136/180 (75%), Gaps = 29/180 (16%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKESGRKQG +SPCAACKLLRRRC  DC FAPYFPADEPQKF SVHKVFGASNVNKML+E
Sbjct: 1   MKESGRKQGTMSPCAACKLLRRRCTPDCAFAPYFPADEPQKFDSVHKVFGASNVNKMLKE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQRSDAVSSMVYEA ARVRDPVYGCVGAISSLQQQ+D LQ QLALAQAEVVHMRMRQ
Sbjct: 61  LPEHQRSDAVSSMVYEAKARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQ 120

Query: 121 VSP--------------SSSSSHNL------------PANSMDHMVDHHHQANIGGSLWS 154
            SP              S++SS NL               SMD +VD   QAN+G SLWS
Sbjct: 121 FSPLSDQQQQPSVLPEASNASSENLYHSSRLLSSQTKSLFSMDMVVD---QANMGQSLWS 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465115|ref|XP_002270650.1| PREDICTED: LOB domain-containing protein 4 [Vitis vinifera] gi|302143255|emb|CBI20550.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/175 (71%), Positives = 135/175 (77%), Gaps = 25/175 (14%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKES RKQGA SPCAACKLLRRRCAQDCVFAPYFPADEPQKFA+VHKVFGASNVNKMLQE
Sbjct: 1   MKESSRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVH+R+RQ
Sbjct: 61  LPVEQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLALAQAEVVHLRVRQ 120

Query: 121 ----------VSPSSSS------------SHNLPANSMDHMVDHHHQANIGGSLW 153
                     +SPS+S+            SH  P   MD +VDH    ++G S+W
Sbjct: 121 AASLSTTRHPISPSNSTASPSPSSNFMPPSHTKPFFEMDMVVDHD---SLGESVW 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053699|ref|XP_002297935.1| predicted protein [Populus trichocarpa] gi|222845193|gb|EEE82740.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 136/176 (77%), Gaps = 27/176 (15%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MKE GRKQGA +PCAACKLLRRRCAQDCVFAPYFPADEPQKFA+VHKVFGASNVNKMLQE
Sbjct: 1   MKEGGRKQGAPAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLALAQAEVVH+R+RQ
Sbjct: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQ 120

Query: 121 VSPSSSSSHNL---------------------PANSMDHMVDHHHQANIGGSLWSC 155
              ++ S+H L                     P   MD MVDH    ++G S+WSC
Sbjct: 121 T--ATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMD-MVDH---TSLGESMWSC 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722989|ref|NP_001236751.1| uncharacterized protein LOC100306560 [Glycine max] gi|255628883|gb|ACU14786.1| unknown [Glycine max]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 131/162 (80%), Gaps = 12/162 (7%)

Query: 1   MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
           MK+ GRKQGA SPCAACKLLRRRCAQDCVFAPYFPADEPQKFA+VHKVFGASNVNKMLQ+
Sbjct: 1   MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQD 60

Query: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120
           LPEHQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ QLA+AQAE VH+R+RQ
Sbjct: 61  LPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQ 120

Query: 121 V----SPSS-----SSSHNLPANSMDHMVDHHHQANIGGSLW 153
                SP+S     S S   P   MD +VD   Q   G S+W
Sbjct: 121 AASLYSPTSPTNSGSPSQAKPIFDMDMVVD---QTPYGDSIW 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464650|ref|XP_004150042.1| PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] gi|449502504|ref|XP_004161659.1| PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 137/175 (78%), Gaps = 25/175 (14%)

Query: 1   MKE-SGRKQG-ALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKML 58
           MKE SGRKQG +LSPCAACKLLRRRCAQDCVFAPYFPADEP KFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 59  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRM 118
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ QLA+AQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 119 RQVSPSS--------------SSSHNLPAN-----SMDHMVDHHHQANIGGSLWS 154
           R    SS              SS  N+PA      SMD MVDH    ++G +LWS
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMD-MVDHD---SMGETLWS 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.774	0.697	0.75	7.7e-48
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.987	0.927	0.485	5.1e-35
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.812	0.652	0.566	2.2e-34
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.509	0.252	0.759	2.1e-32
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.780	0.540	0.52	2.6e-31
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.709	0.578	0.563	3.8e-30
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.509	0.424	0.734	7.9e-30
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.709	0.474	0.563	1e-29
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.509	0.496	0.708	1e-29
TAIR|locus:2065769	268	LBD13 "AT2G30340" [Arabidopsis	0.922	0.533	0.434	1.6e-29

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 90/120 (75%), Positives = 95/120 (79%)

Query:     1 MKESGRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQE 60
             MKES RKQGA SPCAACKLLRRRCAQDCVF+PYFPADEPQKFA+VH+VFGASNVNKMLQE
Sbjct:     1 MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE 60

Query:    61 LPEHQRSDAVSSMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMRMRQ 120
             LP HQR DAVSSMVYEANARVRDPVYGCVG                     EVVH+R+RQ
Sbjct:    61 LPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 81/167 (48%), Positives = 100/167 (59%)

Query:     1 MKESGRKQG-ALSPCAACKLLRRRCAQD-CVFAPYFPADEPQKFASVHKVFGASNVNKML 58
             M++ G + G  +SPCA CKLLRR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKML
Sbjct:     1 MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query:    59 QELPEHQRSDAVSSMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMR- 117
             QEL E+ RSDAV SMVYEANAR++DPVYGCVG                     E++H+R 
Sbjct:    61 QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query:   118 MRQVXXX----XXXXHNLPANS-----MDHMVDHHHQANIGGSLWSC 155
             + ++              P+N      +D  V +   A  G  LWSC
Sbjct:   121 LHRIHTKPPPYTASTVTFPSNKDFYSDIDMAVAYTDDA--GDFLWSC 165

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 72/127 (56%), Positives = 86/127 (67%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
             SPCA+CKLLRRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQELP HQR+DAV+
Sbjct:     7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query:    72 SMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMRMRQVXXXXXXXHNL 131
             S+V+EANARVRDPVYGCVG                     E++ ++M Q        H +
Sbjct:    67 SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM-QNEPTLQSHHQV 125

Query:   132 PANSMDH 138
                  DH
Sbjct:   126 LELDQDH 132

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 60/79 (75%), Positives = 68/79 (86%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
             SPCAACK LRR+C Q+CVFAPYFP D+PQKFA VHKVFGASNV K+L EL  +QR DAV+
Sbjct:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query:    72 SMVYEANARVRDPVYGCVG 90
             S+ YEA AR+RDPVYGCVG
Sbjct:    66 SLFYEAEARLRDPVYGCVG 84

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 65/125 (52%), Positives = 82/125 (65%)

Query:    11 LSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
             ++PCAACKLLRRRCAQ+C F+PYF   EP KFASVHKVFGASNV+KML E+PE QR+DA 
Sbjct:    43 ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query:    71 SSMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMRMRQVXXXXXXXHN 130
             +S+VYEAN R+RDPVYGC+G                     E++  + R+          
Sbjct:   103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLI---- 158

Query:   131 LPANS 135
             +P+NS
Sbjct:   159 VPSNS 163

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 62/110 (56%), Positives = 75/110 (68%)

Query:    11 LSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
             LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct:    31 LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query:    71 SSMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMRMRQ 120
             +SMVYEA AR+RDPVYGC G                     E+V+M+ ++
Sbjct:    91 NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 58/79 (73%), Positives = 66/79 (83%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
             SPCAACK LRR+C   C+FAPYFP +EP KFA+VHK+FGASNV K+L EL  HQR DAV+
Sbjct:    10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query:    72 SMVYEANARVRDPVYGCVG 90
             S+ YEA ARVRDPVYGCVG
Sbjct:    70 SLAYEAEARVRDPVYGCVG 88

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 62/110 (56%), Positives = 74/110 (67%)

Query:    11 LSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAV 70
             LSPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct:    53 LSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 112

Query:    71 SSMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMRMRQ 120
             +SMVYEA AR+RDPVYGC G                     E+V M++++
Sbjct:   113 NSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 56/79 (70%), Positives = 68/79 (86%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVS 71
             SPCAACK LRR+C  DCVFAPYFP +EP KFA+VH++FGASNV+K+L E+  HQR DAV+
Sbjct:    38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query:    72 SMVYEANARVRDPVYGCVG 90
             S+ YEA AR++DPVYGCVG
Sbjct:    98 SLAYEAEARLKDPVYGCVG 116

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065769 LBD13 "AT2G30340" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 63/145 (43%), Positives = 85/145 (58%)

Query:     5 GRKQGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEH 64
             G     ++PCAACKLLRRRCA++C F+PYF   EP KFA+VHKVFGASNV+KML E+ E 
Sbjct:    44 GTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGES 103

Query:    65 QRSDAVSSMVYEANARVRDPVYGCVGXXXXXXXXXXXXXXXXXXXXXEVVHMRMRQVXXX 124
             QR DA +S+VYEAN R+RDP+YGC+G                     E++  + ++    
Sbjct:   104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Query:   125 XXXXHNLPANSMDHMV--DHHHQAN 147
                 +N  + +    V  D H  A+
Sbjct:   164 TSLQNNFNSTTTTSSVSCDQHALAS 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHE9	LBD4_ARATH	No assigned EC number	0.6777	0.9483	0.8546	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	5e-58

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  175 bits (446), Expect = 5e-58
 Identities = 67/100 (67%), Positives = 84/100 (84%)

Query: 13  PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSS 72
           PCAACK LRR+C  DCV APYFPA++P +FA+VHK+FGASNV K+L+ LP  QR DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 73  MVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAE 112
           ++YEA+AR RDPVYGCVG I SLQQQ++ LQA+LAL +A+
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQ 100

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	89.81
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	86.2

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=5.4e-52  Score=308.46  Aligned_cols=101  Identities=73%  Similarity=1.246  Sum_probs=99.6

Q ss_pred             CChhhHHhhhCCCCCCccCcCCCCCChhHHHHHHHhhccccHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHH
Q 044340           13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAI   92 (155)
Q Consensus        13 ~CaaCK~lRRrC~~~C~lAPyFP~~~~~~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I   92 (155)
                      +|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 044340           93 SSLQQQIDSLQAQLALAQAEV  113 (155)
Q Consensus        93 ~~Lq~qi~~lq~eLa~~~ael  113 (155)
                      +.|+|||+++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=89.81  E-value=0.37  Score=35.45  Aligned_cols=50  Identities=24%  Similarity=0.364  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCcchhhhcccccc
Q 044340           92 ISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSSSSHNLPANSMDHMVDHHHQA  146 (155)
Q Consensus        92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (155)
                      +-.|+.+.+.+++|.+.+++++.++.++|-.-.+..+.     +.+.|.|+-||.
T Consensus        32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~-----sr~~V~d~L~q~   81 (87)
T PF10883_consen   32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRL-----SRDSVIDQLQQH   81 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-----CHHHHHHHHHHc
Confidence            66788899999999999999999999998775543222     566777765554

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.20  E-value=3.6  Score=35.21  Aligned_cols=64  Identities=14%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             HHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340           56 KMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMR  119 (155)
Q Consensus        56 k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~~~  119 (155)
                      .-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++++++..+..|+.++.-
T Consensus        14 ~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~   77 (233)
T COG3416          14 HRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG   77 (233)
T ss_pred             HHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3455566778999999999999999999999999999999999999999999999888766553

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	83.83

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=83.83  E-value=1.7  Score=25.61  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340           90 GAISSLQQQIDSLQAQLALAQAEVVHM  116 (155)
Q Consensus        90 G~I~~Lq~qi~~lq~eLa~~~ael~~~  116 (155)
                      |.|-.|+++|..|+.|++..+-|++.+
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaal   28 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAAL   28 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00